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ch.psi.imagej.hdf5/Readme.md
2014-03-06 16:17:38 +01:00

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# Installation
* Download latest HDF5 ImageJ plugin from [here](http://slsyoke4.psi.ch:8081/artifactory/releases/HDF5_Viewer-0.2.0.zip).
Go into the ImageJ installation folder and extract the downloaded zip.
```
cd <IMAGEJ_HOME>
unzip <path of downloaded zip>
```
## Prerequisites
This plugin requires ImageJ to be run with a Java 7 or greater JVM.
# Usage
Mac OS X:
```
java -Djava.library.path=./lib/mac64 -Xmx3048m -jar ImageJ64.app/Contents/Resources/Java/ij.jar
```
Linux:
```
java -Djava.library.path=./lib/linux64 -Xmx3048m -jar ij.jar
```
The `Xmx` setting is quite random it depends on how big hdf5 files you are planning to open.
# Development
To create an all in one zip file for installation in a ImageJ installation use:
`mvn clean compile assembly:assembly`
The zip file contains an all in one jar as well as the required native libraries for Windows, Linux and Mac OS X.
# References
This project started from and is inspired by: ImageJ HDF Plugin of Matthias Schlachter Chair of Pattern Recognition and Image Processing, University of Freiburg, Germany.
https://code.google.com/p/imagej-hdf/