mirror of
https://github.com/paulscherrerinstitute/ch.psi.imagej.hdf5.git
synced 2025-04-19 20:50:02 +02:00
Re-Arranged lots of stuff
This commit is contained in:
parent
0882f5a255
commit
343084b312
32
.classpath
Normal file
32
.classpath
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@ -0,0 +1,32 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<classpath>
|
||||
<classpathentry kind="src" output="target/classes" path="src/main/java">
|
||||
<attributes>
|
||||
<attribute name="optional" value="true"/>
|
||||
<attribute name="maven.pomderived" value="true"/>
|
||||
</attributes>
|
||||
</classpathentry>
|
||||
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
|
||||
<attributes>
|
||||
<attribute name="optional" value="true"/>
|
||||
<attribute name="maven.pomderived" value="true"/>
|
||||
</attributes>
|
||||
</classpathentry>
|
||||
<classpathentry kind="src" path="src/main/resources"/>
|
||||
<classpathentry kind="src" path="src/test/resources"/>
|
||||
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/J2SE-1.5">
|
||||
<attributes>
|
||||
<attribute name="maven.pomderived" value="true"/>
|
||||
</attributes>
|
||||
</classpathentry>
|
||||
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
|
||||
<attributes>
|
||||
<attribute name="maven.pomderived" value="true"/>
|
||||
</attributes>
|
||||
</classpathentry>
|
||||
<classpathentry kind="lib" path="hdf-java/jhdf.jar"/>
|
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<classpathentry kind="lib" path="hdf-java/jhdf5.jar"/>
|
||||
<classpathentry kind="lib" path="hdf-java/jhdf5obj.jar"/>
|
||||
<classpathentry kind="lib" path="hdf-java/jhdfobj.jar"/>
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||||
<classpathentry kind="output" path="target/classes"/>
|
||||
</classpath>
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||||
1
.gitignore
vendored
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1
.gitignore
vendored
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@ -0,0 +1 @@
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/target
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23
.project
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23
.project
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@ -0,0 +1,23 @@
|
||||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<projectDescription>
|
||||
<name>ImageJHDF5</name>
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<comment></comment>
|
||||
<projects>
|
||||
</projects>
|
||||
<buildSpec>
|
||||
<buildCommand>
|
||||
<name>org.eclipse.jdt.core.javabuilder</name>
|
||||
<arguments>
|
||||
</arguments>
|
||||
</buildCommand>
|
||||
<buildCommand>
|
||||
<name>org.eclipse.m2e.core.maven2Builder</name>
|
||||
<arguments>
|
||||
</arguments>
|
||||
</buildCommand>
|
||||
</buildSpec>
|
||||
<natures>
|
||||
<nature>org.eclipse.jdt.core.javanature</nature>
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||||
<nature>org.eclipse.m2e.core.maven2Nature</nature>
|
||||
</natures>
|
||||
</projectDescription>
|
||||
5
.settings/org.eclipse.jdt.core.prefs
Normal file
5
.settings/org.eclipse.jdt.core.prefs
Normal file
@ -0,0 +1,5 @@
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||||
eclipse.preferences.version=1
|
||||
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.5
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org.eclipse.jdt.core.compiler.compliance=1.5
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||||
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
|
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org.eclipse.jdt.core.compiler.source=1.5
|
||||
4
.settings/org.eclipse.m2e.core.prefs
Normal file
4
.settings/org.eclipse.m2e.core.prefs
Normal file
@ -0,0 +1,4 @@
|
||||
activeProfiles=
|
||||
eclipse.preferences.version=1
|
||||
resolveWorkspaceProjects=true
|
||||
version=1
|
||||
202
LICENSE
202
LICENSE
@ -1,202 +0,0 @@
|
||||
|
||||
Apache License
|
||||
Version 2.0, January 2004
|
||||
http://www.apache.org/licenses/
|
||||
|
||||
TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
|
||||
|
||||
1. Definitions.
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||||
"License" shall mean the terms and conditions for use, reproduction,
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14
NOTICE
14
NOTICE
@ -1,14 +0,0 @@
|
||||
=========================================================================
|
||||
== NOTICE file corresponding to the section 4 d of ==
|
||||
== the Apache License, Version 2.0, ==
|
||||
== in this case for the ImageJ HDF Plugin distribution. ==
|
||||
=========================================================================
|
||||
|
||||
ImageJ HDF Plugin
|
||||
Copyright 2011 Matthias Schlachter
|
||||
|
||||
This product includes software developed by Matthias Schlachter.
|
||||
|
||||
The initial release of this software was developed by Matthias Schlachter
|
||||
at the Chair of Pattern Recognition and Image Processing, University of
|
||||
Freiburg, Germany.
|
||||
33
README
33
README
@ -1,33 +0,0 @@
|
||||
####################################################################
|
||||
# INSTALL NOTES #
|
||||
####################################################################
|
||||
- For linux 32bit:
|
||||
Edit the "run" file in your ImageJ installation directory that it
|
||||
looks like the following
|
||||
./jre/bin/java -Djava.library.path=./lib/linux32
|
||||
-Xmx512m -jar ij.jar
|
||||
|
||||
- For linux 64bit:
|
||||
Edit the "run" file in your ImageJ installation directory that it
|
||||
looks like the following
|
||||
java -Djava.library.path=./lib/linux64
|
||||
-Xmx512m -jar ij.jar
|
||||
|
||||
Note: You must have 64bit JRE installed!
|
||||
|
||||
- For windows 32bit:
|
||||
Edit the "ImageJ.cfg" file in your ImageJ installation directory
|
||||
that it looks like the following
|
||||
C:\Programme\Java\jdk1.5.0_14\bin\javaw.exe
|
||||
-Djava.library.path=lib\win32 -Xmx640m -cp ij.jar ij.ImageJ
|
||||
|
||||
- For Mac 32bit (tested on Snow Leopard):
|
||||
Edit the "run" file in your ImageJ installation directory that it
|
||||
looks like the following
|
||||
java -Djava.library.path=./lib/mac32
|
||||
-Xmx512m -jar ij.jar
|
||||
|
||||
Note: You must have 32bit JRE installed or force the JVM to use a
|
||||
32bit data model (-d32)!
|
||||
|
||||
####################################################################
|
||||
23
Readme.md
Normal file
23
Readme.md
Normal file
@ -0,0 +1,23 @@
|
||||
# Installation
|
||||
|
||||
Drop jar into plugins directory of the ImageJ installation.
|
||||
|
||||
## Linux 32Bit
|
||||
Edit the `run` file of your ImageJ installation
|
||||
`./jre/bin/java -Djava.library.path=./lib/linux32 -Xmx512m -jar ij.jar`
|
||||
|
||||
## Linux 64Bit
|
||||
Edit the `run` file of your ImageJ installation
|
||||
`java -Djava.library.path=./lib/linux64 -Xmx512m -jar ij.jar`
|
||||
|
||||
## Windows 32Bit
|
||||
Edit the "ImageJ.cfg" of your ImageJ installation
|
||||
`C:\Programme\Java\jdk1.5.0_14\bin\javaw.exe -Djava.library.path=lib\win32 -Xmx640m -cp ij.jar ij.ImageJ`
|
||||
|
||||
## Mac 32Bit
|
||||
Edit the `run` file of your ImageJ installation
|
||||
`java -Djava.library.path=./lib/mac32 -Xmx512m -jar ij.jar`
|
||||
|
||||
# References
|
||||
Inspired by: ImageJ HDF Plugin of Matthias Schlachter Chair of Pattern Recognition and Image Processing, University of Freiburg, Germany.
|
||||
https://code.google.com/p/imagej-hdf/
|
||||
16
pom.xml
Normal file
16
pom.xml
Normal file
@ -0,0 +1,16 @@
|
||||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<groupId>ch.psi</groupId>
|
||||
<artifactId>imagej.h5</artifactId>
|
||||
<version>0.0.1</version>
|
||||
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>gov.nih.imagej</groupId>
|
||||
<artifactId>imagej</artifactId>
|
||||
<version>1.46</version>
|
||||
<scope>provided</scope>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
</project>
|
||||
@ -16,29 +16,6 @@
|
||||
*
|
||||
*=========================================================================*/
|
||||
|
||||
|
||||
import ij.*;
|
||||
import ij.io.*;
|
||||
import ij.plugin.*;
|
||||
import ij.plugin.filter.PlugInFilter;
|
||||
import ij.process.*;
|
||||
import ij.gui.*;
|
||||
import java.awt.*;
|
||||
import java.lang.Math;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.File;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
|
||||
import javax.swing.tree.DefaultMutableTreeNode;
|
||||
|
||||
import ncsa.hdf.object.*; // the common object package
|
||||
import ncsa.hdf.object.h5.*; // the HDF5 implementation
|
||||
import ncsa.hdf.hdf5lib.exceptions.HDF5Exception;
|
||||
import ncsa.hdf.hdflib.HDFException;
|
||||
|
||||
public class HDF5_Batch_
|
||||
{
|
||||
public static void run(String arg)
|
||||
@ -17,14 +17,10 @@
|
||||
*=========================================================================*/
|
||||
|
||||
|
||||
import ij.IJ;
|
||||
import ij.Prefs;
|
||||
import ij.gui.GenericDialog;
|
||||
import ij.plugin.PlugIn;
|
||||
import java.util.regex.*;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
import java.lang.String;
|
||||
|
||||
|
||||
@ -16,9 +16,6 @@
|
||||
*
|
||||
*=========================================================================*/
|
||||
|
||||
import ij.IJ;
|
||||
import ij.Prefs;
|
||||
import ij.plugin.PlugIn;
|
||||
import java.util.regex.*;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
@ -32,10 +32,7 @@ import java.io.File;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
// for scrollbar
|
||||
import java.awt.*;
|
||||
import java.awt.image.*;
|
||||
import java.io.*;
|
||||
|
||||
import ncsa.hdf.object.*; // the common object package
|
||||
import ncsa.hdf.object.h5.*; // the HDF5 implementation
|
||||
@ -19,15 +19,9 @@
|
||||
|
||||
import ij.*;
|
||||
import ij.io.*;
|
||||
import ij.plugin.*;
|
||||
import ij.plugin.filter.PlugInFilter;
|
||||
import ij.process.*;
|
||||
import ij.gui.*;
|
||||
import java.awt.*;
|
||||
import java.lang.Math;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.io.File;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Iterator;
|
||||
import java.util.List;
|
||||
@ -37,7 +31,6 @@ import javax.swing.tree.DefaultMutableTreeNode;
|
||||
import ncsa.hdf.object.*; // the common object package
|
||||
import ncsa.hdf.object.h5.*; // the HDF5 implementation
|
||||
import ncsa.hdf.hdf5lib.exceptions.HDF5Exception;
|
||||
import ncsa.hdf.hdflib.HDFException;
|
||||
|
||||
public class HDF5_Writer_ implements PlugInFilter
|
||||
{
|
||||
@ -18,9 +18,6 @@
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
//import java.util.Iterator;
|
||||
//import java.util.List;
|
||||
|
||||
|
||||
public class TimeFrame implements Comparable
|
||||
{
|
||||
Loading…
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Reference in New Issue
Block a user