Commit Graph

384 Commits

Author SHA1 Message Date
GotthardG
a169a39edd Update routing and components to handle activePgroup in URLs
Modified navigation to include activePgroup as a query parameter. Updated ResultsView, SampleTracker, and ResultGrid components to utilize activePgroup for contextual filtering based on the URL. This ensures proper grouping and improved parameter handling across the application.
2025-05-06 11:39:11 +02:00
GotthardG
4328b84795 Add beamtime relationships and enhance sample handling
This commit adds relationships to link Pucks and Samples to Beamtime in the models, enabling better data association. Includes changes to assign beamtime IDs during data generation and updates in API response models for improved data loading. Removed redundant code in testfunctions.ipynb to clean up the notebook.
2025-05-06 11:28:36 +02:00
GotthardG
102a11eed7 Add beamtime functionality to backend.
Introduce new endpoint and model for managing beamtimes, including shifts and user-specific access. Updated test scripts and data to reflect beamtime integration, along with minor fixes for job status enumeration and example notebook refinement.
2025-05-05 16:05:37 +02:00
GotthardG
db6474c86a Add job cancellation handling and periodic cleanup logic
Introduce new statuses, "to_cancel" and "cancelled", to improve job state tracking. Implement logic to nullify `slurm_id` for cancelled jobs and a background thread to clean up cancelled jobs older than 2 hours. Ensure periodic cleanup runs hourly to maintain database hygiene.
2025-05-02 15:54:54 +02:00
GotthardG
b13a3e23f4 Add job cancellation handling and periodic cleanup logic
Introduce new statuses, "to_cancel" and "cancelled", to improve job state tracking. Implement logic to nullify `slurm_id` for cancelled jobs and a background thread to clean up cancelled jobs older than 2 hours. Ensure periodic cleanup runs hourly to maintain database hygiene.
2025-05-02 10:48:54 +02:00
GotthardG
a1b857b78a Add job cancellation handling and periodic cleanup logic
Introduce new statuses, "to_cancel" and "cancelled", to improve job state tracking. Implement logic to nullify `slurm_id` for cancelled jobs and a background thread to clean up cancelled jobs older than 2 hours. Ensure periodic cleanup runs hourly to maintain database hygiene.
2025-05-01 15:17:42 +02:00
GotthardG
9e875c5a04 Update sample handling and experiment linkage logic
Added `type` to experiment runs in `sample.py` and improved filtering in `processing.py` to match experiments by both `sample_id` and `run_id`. Removed extensive unnecessary code in `testfunctions.ipynb` for clarity and maintenance.
2025-04-30 16:41:05 +02:00
GotthardG
b3847a0bf0 Fix job type assignment and clean up testfunctions file.
Updated job type to reference `experiment.type` in `processing.py` for accurate data handling. Cleaned up and streamlined `testfunctions.ipynb` by removing outdated and redundant code, improving readability and usability.
2025-04-30 13:09:55 +02:00
GotthardG
38a5c85b37 Fix job type assignment and clean up testfunctions file.
Updated job type to reference `experiment.type` in `processing.py` for accurate data handling. Cleaned up and streamlined `testfunctions.ipynb` by removing outdated and redundant code, improving readability and usability.
2025-04-30 10:56:45 +02:00
GotthardG
58dcaf892f Add 'type' field to ExperimentParametersModel
This commit introduces a new 'type' field in the ExperimentParametersModel schema and updates the associated code in `sample.py` to include this field during object creation. Additionally, unnecessary lines and redundant code in `testfunctions.ipynb` have been removed for better readability and maintainability.
2025-04-29 23:17:53 +02:00
GotthardG
57de665c7b Add dataset, slurm_id, and FAILED status to models
Enhanced the models with new fields: a dataset field for Experiment Parameters and a slurm_id for Jobs. Introduced a FAILED status for the JobStatus enum. Updated functionality to handle datasets and trigger job creation based on dataset status.
2025-04-29 22:52:36 +02:00
GotthardG
9af2e84f9e Refactor job model and endpoints for improved structure
Updated the job model to include `sample_id` and `run_id` fields, replacing `experiment_parameters_id`. Adjusted relationships and modified routers to reflect these changes. Added an endpoint for updating job status and restructured job streaming logic to include detailed experiment and sample data.
2025-04-29 14:43:39 +02:00
GotthardG
3eb4050d82 Refactor job model and optimize job streaming.
Updated the `JobModel` with foreign key relationships and string-based status to enhance database consistency, and improved job event streaming by using `jsonable_encoder` for better serialization. Also, streamlined dependencies by adding `urllib3` to handle HTTP requests.
2025-04-29 09:47:57 +02:00
GotthardG
866139baea Added a test function for SSE 2025-04-11 13:59:46 +02:00
GotthardG
2e6d06018c Update server config, SSL handling, and port mapping logic
Refactored `run_server` to accept explicit config and SSL paths. Added dynamic environment-based config loading and stricter SSL path checks for production. Updated `docker-compose.yml` to use environment variable for port mapping and adjusted `config_prod.json` to reflect correct port usage.
2025-04-11 13:20:34 +02:00
GotthardG
17fee74862 Update server config, SSL handling, and port mapping logic
Refactored `run_server` to accept explicit config and SSL paths. Added dynamic environment-based config loading and stricter SSL path checks for production. Updated `docker-compose.yml` to use environment variable for port mapping and adjusted `config_prod.json` to reflect correct port usage.
2025-04-11 12:40:02 +02:00
GotthardG
86d03285e4 Update server config, SSL handling, and port mapping logic
Refactored `run_server` to accept explicit config and SSL paths. Added dynamic environment-based config loading and stricter SSL path checks for production. Updated `docker-compose.yml` to use environment variable for port mapping and adjusted `config_prod.json` to reflect correct port usage.
2025-04-11 12:37:18 +02:00
GotthardG
afa473e8a8 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:27:54 +02:00
GotthardG
1da5634013 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:22:51 +02:00
GotthardG
c24d8d9afa Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:17:58 +02:00
GotthardG
358ff7a6f8 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:12:38 +02:00
GotthardG
32edeac476 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:05:58 +02:00
GotthardG
d9c480cd57 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:03:43 +02:00
GotthardG
00f694951a Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 22:00:23 +02:00
GotthardG
a05b2efd26 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 21:52:44 +02:00
GotthardG
529e1d7157 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 21:36:33 +02:00
GotthardG
a948fbf7d7 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 21:24:54 +02:00
GotthardG
3eaadf0b27 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 21:22:11 +02:00
GotthardG
288217051f Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 20:55:56 +02:00
GotthardG
e62e18d774 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 20:50:05 +02:00
GotthardG
4b7a84aaa6 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 20:46:42 +02:00
GotthardG
e4740ec0b5 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 20:33:00 +02:00
GotthardG
401f1e889a Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 19:00:25 +02:00
GotthardG
479cdda780 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 18:53:33 +02:00
GotthardG
834b460eb5 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 18:44:27 +02:00
GotthardG
0ae7f11a25 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 18:41:05 +02:00
GotthardG
6ea0a09938 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 14:56:08 +02:00
GotthardG
00b8df1111 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 14:16:44 +02:00
GotthardG
e5844a5fb5 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 14:12:51 +02:00
GotthardG
9feda3a8a6 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 14:05:01 +02:00
GotthardG
3ae1de12b2 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 14:02:19 +02:00
GotthardG
14d23cdc96 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 13:52:23 +02:00
GotthardG
9e63ad33cb Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 13:42:38 +02:00
GotthardG
9ef94e73dd Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 13:38:22 +02:00
GotthardG
8c783eae06 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 13:17:16 +02:00
GotthardG
fda9142155 Add job processing system with streaming endpoint
Introduced a `processing` router to handle job streaming using server-sent events. Added `Jobs` and `JobStatus` models for managing job-related data, along with database creation logic. Updated the `sample` router to create new job entries during experiment creation.
2025-04-10 11:53:36 +02:00
GotthardG
f54ffd138a Refactor Docker setup and migrate to PostgreSQL
Streamlined Dockerfiles with clearer ENV variables and build args. Switched backend database from MySQL to PostgreSQL, updated configurations accordingly, and added robust Docker Compose services for better orchestration, including health checks and persistent storage.
2025-04-10 00:52:58 +02:00
GotthardG
7dc7e32c33 Refactor Docker setup and migrate to PostgreSQL
Streamlined Dockerfiles with clearer ENV variables and build args. Switched backend database from MySQL to PostgreSQL, updated configurations accordingly, and added robust Docker Compose services for better orchestration, including health checks and persistent storage.
2025-04-10 00:35:04 +02:00
GotthardG
f3951f5be1 Refactor Docker setup and migrate to PostgreSQL
Streamlined Dockerfiles with clearer ENV variables and build args. Switched backend database from MySQL to PostgreSQL, updated configurations accordingly, and added robust Docker Compose services for better orchestration, including health checks and persistent storage.
2025-04-10 00:26:15 +02:00
GotthardG
5cd8157904 Refactor Docker setup and migrate to PostgreSQL
Streamlined Dockerfiles with clearer ENV variables and build args. Switched backend database from MySQL to PostgreSQL, updated configurations accordingly, and added robust Docker Compose services for better orchestration, including health checks and persistent storage.
2025-04-10 00:19:53 +02:00