renamed fda script to server and added script to startup the viewer

ch.psi.fda/src/main/assembly/bin/viewer

@@ -0,0 +1,40 @@
+#!/bin/bash
+
+CURRENTDIR=`pwd`
+
+# Resolve symlinks
+BASEDIR=$0
+while [ -h "$BASEDIR" ]; do
+    ls=`ls -ld "$BASEDIR"`
+    link=`expr "$ls" : '^.*-> \(.*\)$' 2>/dev/null`
+    if expr "$link" : '^/' 2> /dev/null >/dev/null; then
+        BASEDIR="$link"
+    else
+        BASEDIR="`dirname "$BASEDIR"`/$link"
+    fi
+done
+BASEDIR=`dirname "$BASEDIR"`
+
+SCRIPTNAME=`basename ${0}`
+
+APPLICATION_HOME=$BASEDIR/../..
+
+LIB_DIR=`find $BASEDIR/../lib -name "*.jar"`
+LIB_DIR=`echo $LIB_DIR | sed -e 's/ /:/g'`
+
+CLASSPATH=${APPLICATION_HOME}/config/:$LIB_DIR
+
+ARGUMENTS=
+VM_ARGUMENTS=
+for i in $@
+do
+        if [ `expr $i : '-D.*'` != '0' ] ;then
+                # Extract VM options
+                VM_ARGUMENTS="$VM_ARGUMENTS $i"
+        else
+                ARGUMENTS="$ARGUMENTS $i"
+        fi
+done
+
+# Execute java
+java -Xmx1024m -XX:MaxPermSize=128m -cp $CLASSPATH -Dch.psi.fda.home=${APPLICATION_HOME} -Djava.util.logging.config.file=${APPLICATION_HOME}/config/logging.properties $VM_ARGUMENTS ch.psi.fda.ViewerMain $ARGUMENTS

ch.psi.fda/src/main/java/ch/psi/fda/ViewerMain.java

@@ -33,6 +33,12 @@ import javax.swing.JScrollPane;
 import javax.swing.JTabbedPane;
 import javax.swing.ScrollPaneLayout;
 
+import org.apache.commons.cli.CommandLine;
+import org.apache.commons.cli.GnuParser;
+import org.apache.commons.cli.HelpFormatter;
+import org.apache.commons.cli.Options;
+import org.apache.commons.cli.ParseException;
+
 import com.google.common.eventbus.EventBus;
 import com.google.common.eventbus.Subscribe;
 
@@ -137,9 +143,38 @@ public class ViewerMain {
 	 */
 	public static void main(String[] args) {
 		
+		int port = 10000;
+		String hostname = "localhost";
+		Options options = new Options();
+		options.addOption("h", false, "Help");
+		options.addOption("p", true, "Server port (default: "+port+")");
+		options.addOption("s", true, "Server address (default: "+hostname+")");
+
+		GnuParser parser = new GnuParser();
+		
+		try {
+			CommandLine line = parser.parse(options, args);
+			
+			if (line.hasOption("p")) {
+				port = Integer.parseInt(line.getOptionValue("p"));
+			}
+			if (line.hasOption("s")) {
+				hostname = line.getOptionValue("s");
+			}
+			if (line.hasOption("h")) {
+				HelpFormatter f = new HelpFormatter();
+				f.printHelp("viewer", options);
+				return;
+			}
+		} catch (ParseException e1) {
+			System.err.println("Wrong arguments: "+ e1.getMessage());
+			System.exit(-1);
+		}
+
+		
 		
 		try{
-			ViewerMain e = new ViewerMain("tcp://emac:10000");
+			ViewerMain e = new ViewerMain("tcp://"+hostname+":"+port);
 			e.visualize();
 		}
 		catch(Exception ee){

ch.psi.fda/src/main/java/ch/psi/fda/rest/FdaServer.java

@@ -1,7 +1,6 @@
 package ch.psi.fda.rest;
 
 import java.io.IOException;
-import java.net.InetAddress;
 import java.net.URI;
 import java.util.concurrent.CountDownLatch;
 import java.util.logging.Logger;
@@ -30,7 +29,8 @@ public class FdaServer {
 	public static void main(String[] args) throws IOException, ParseException {
 
 		int port = 8080;
-		String hostname = InetAddress.getLocalHost().getHostName();
+//		String hostname = InetAddress.getLocalHost().getHostName();
+		String hostname = "localhost";
 
 		Options options = new Options();
 		options.addOption("h", false, "Help");
@@ -48,7 +48,7 @@ public class FdaServer {
 		}
 		if (line.hasOption("h")) {
 			HelpFormatter f = new HelpFormatter();
-			f.printHelp("broker", options);
+			f.printHelp("fda", options);
 			return;
 		}