Moench working version

.clang-format

@@ -1,6 +0,0 @@
-BasedOnStyle: LLVM
-IndentWidth: 4
-
-UseTab: Never
-ColumnLimit: 100
-AlignConsecutiveAssignments: false 

.clang-tidy

@@ -1,7 +0,0 @@
----
-Checks:          '*, -google-runtime-references, -hicpp-no-array-decay, -cppcoreguidelines-pro-bounds-array-to-pointer-decay, -cppcoreguidelines-pro-bounds-pointer-arithmetic, -fuchsia*,-readability-else-after-return,-readability-avoid-const-params-in-decls,-hicpp-signed-bitwise,-cppcoreguidelines-pro-bounds-constant-array-index,-llvm-header-guard,-readability-static-accessed-through-instance,-google-readability-todo'
-WarningsAsErrors: '*'
-HeaderFilterRegex: '.*'
-AnalyzeTemporaryDtors: false
-FormatStyle:     none
-...

.gitignore

@@ -6,12 +6,6 @@ bin/
 *.log
 *.out
 *.toc
-*.o
 build
 docs/
 RELEASE.txt
-
-
-*.pyc
-*/__pycache__/*
-

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "python/pybind11"]
-	path = python/pybind11
-	url = https://github.com/pybind/pybind11.git

.travis.yml

@@ -2,13 +2,10 @@ sudo: false
 
 language: cpp
 
-os: linux
-
-env: 
-  matrix: 
-     - CONDA_PY=3.6
-     - CONDA_PY=3.7
-
+matrix:
+  include:
+    - os: linux
+      env: CONDA_PY=3.6
 
 dist: trusty
 
@@ -44,5 +41,5 @@ deploy:
   provider: script
   script: find $HOME/miniconda/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -t $CONDA_TOKEN upload --force {} \;
   on:
-    all_branches: true
+    branch: developer
 

CMakeLists.txt

@@ -1,134 +1,57 @@
 cmake_minimum_required(VERSION 2.8)
-# cmake_minimum_required(VERSION 3.5)
-project(slsDetectorPackage)
-include(cmake/project_version.cmake)
-
-# Include additional modules that are used unconditionally
-include(GNUInstallDirs)
-
-# If conda build, always set lib dir to 'lib'
-if($ENV{CONDA_BUILD})
-  set(CMAKE_INSTALL_LIBDIR "lib")
-endif()
-
-# Set lower / upper case project names
-string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UPPER)
-string(TOLOWER "${PROJECT_NAME}" PROJECT_NAME_LOWER)
-
-# Set targets export name (used by slsDetectorPackage and dependencies)
-set(TARGETS_EXPORT_NAME "${PROJECT_NAME_LOWER}-targets")
-#set(namespace "${PROJECT_NAME}::")
-
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+set (CALIBRATE OFF)
+
+option (USE_HDF5 "HDF5 File format" OFF)
+option (USE_TEXTCLIENT "Text Client" OFF)
+option (USE_RECEIVER "Receiver" OFF)
+option (USE_GUI "GUI" OFF)
 
 
-# Check if project is being used directly or via add_subdirectory
-set(SLS_MASTER_PROJECT OFF)
-if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
-    set(SLS_MASTER_PROJECT ON)
-endif()
+if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 6.0)
+	set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wall -std=c++98 -Wno-misleading-indentation")
+else ()
+	set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -std=c++98")
+endif ()
 
+find_package(Qt4)
+find_package(Qwt 6)
+find_package(CBF)
+find_package(Doxygen)
+# find_package(PNG REQUIRED)
 
-
-option (SLS_USE_HDF5 "HDF5 File format" OFF)
-option (SLS_USE_TEXTCLIENT "Text Client" OFF)
-option (SLS_USE_RECEIVER "Receiver High Level API" OFF)
-option (SLS_USE_LISTENER "Receiver Low Level API" OFF)
-option (SLS_USE_GUI "GUI" OFF)
-option (SLS_USE_TESTS "TESTS" ON)
-option (SLS_USE_INTEGRATION_TESTS "Integration Tests" ON)
-option(SLS_USE_SANITIZER "Sanitizers for debugging" OFF)
-option(SLS_USE_PYTHON "Python bindings" OFF)
-
-set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
-
-#Testing for minimum version for compilers
-if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
-    # clang does not support -Wno-misleading-indentation 
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.2)
-        message(FATAL_ERROR "Clang version must be at least 3.2!")
-    endif()
-elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
-            message(FATAL_ERROR "GCC version must be at least 4.8!")
-    endif()
-    set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wno-misleading-indentation -Wno-stringop-truncation -Wno-class-memaccess")
-endif()
-
-# Suppressed warnings in GCC
-# -Wno-stringop-truncation happens when we do sls::strcpy_safe truncates string instead of overwrite buffer
-# -Wno-class-memaccess - on memcpy in rapidjson should be investigated upgrade implementation?
-# -Wno-misleading-indentation - until clang format
-
-#set (CMAKE_CXX_STANDARD 11)
-#set (CMAKE_CXX_STANDARD_REQUIRED ON)
-set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -std=c++11 ")
-
-if(SLS_USE_SANITIZER)
-    set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS_DEBUG} -fno-omit-frame-pointer -fsanitize=address,undefined")
-    set (CMAKE_LINKER_FLAGS "${CMAKE_LINKER_FLAGS_DEBUG} -fno-omit-frame-pointer -fsanitize=address,undefiend")
-endif()
-
+if (USE_HDF5)
+	find_package(HDF5 1.10 COMPONENTS CXX)
+endif (USE_HDF5)
 
 set(CMAKE_POSITION_INDEPENDENT_CODE ON)
+
 set(CMAKE_INSTALL_RPATH "$ORIGIN")
 set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 
 
+if (USE_TEXTCLIENT)
+       add_subdirectory(slsDetectorSoftware)
+endif (USE_TEXTCLIENT)
 
-find_package(Doxygen)
-find_package(ZeroMQ 4 REQUIRED)
+if (USE_RECEIVER)
+       add_subdirectory(slsReceiverSoftware)
+       add_subdirectory(manual/manual-api)    
+endif (USE_RECEIVER)
+               
+               
+if (USE_GUI)   
+       if (QT4_FOUND AND QWT_FOUND)
+       add_subdirectory(slsDetectorGui)
+       endif()
+endif (USE_GUI)
 
 
-# Support library containing functionallity common to 
-# detector and receiver
-add_subdirectory(slsSupportLib)
-
-if (SLS_USE_TEXTCLIENT)
-    add_subdirectory(slsDetectorSoftware)
-endif (SLS_USE_TEXTCLIENT)
-
-# This logic could be moved in slsReceiverSoftware/CMakeLists.txt
-if (SLS_USE_RECEIVER)
-    set(SLS_USE_LISTENER ON)
-    if (SLS_USE_HDF5)
-        find_package(HDF5 1.10 COMPONENTS CXX REQUIRED)
-    endif (SLS_USE_HDF5)
-    add_subdirectory(slsReceiverSoftware/slsReceiver)
-    add_subdirectory(manual/manual-api)    
-endif (SLS_USE_RECEIVER)
-
-if (SLS_USE_LISTENER)
-    add_subdirectory(slsReceiverSoftware/slsListener)
-endif (SLS_USE_LISTENER)
-
-if (SLS_USE_GUI)   
-    find_package(Qt4 REQUIRED)
-    find_package(Qwt 6 REQUIRED)
-    if (QT4_FOUND AND QWT_FOUND)
-        add_subdirectory(slsDetectorGui)
+if (CALIBRATE)
+    if (DEFINED ENV{ROOTSYS})
+        find_package(ROOT)
+        if (ROOT_FOUND)
+            add_subdirectory(calibrationWizards)
+        endif()
     endif()
-endif (SLS_USE_GUI)
-
-if (SLS_USE_TESTS)
-    enable_testing()
-endif(SLS_USE_TESTS)
-
-if (SLS_USE_INTEGRATION_TESTS)
-    add_subdirectory(integrationTests)
-endif (SLS_USE_INTEGRATION_TESTS)
-
-if (SLS_USE_PYTHON)
-    add_subdirectory(python)
-endif(SLS_USE_PYTHON)
-
-
-if(SLS_MASTER_PROJECT)
-    # Set install dir CMake packages
-    set(CMAKE_INSTALL_DIR ${CMAKE_INSTALL_DATADIR}/cmake/sls)
-    # Set the list of exported targets
-    set(PROJECT_LIBRARIES slsSupportLib slsDetectorShared slsReceiverShared)
-    # Generate and install package config file and version
-    include(cmake/package_config.cmake)
-endif()
-
+endif(CALIBRATE)

Makefile

@@ -0,0 +1,235 @@
+# do not change below this line#
+
+# Include common definitions
+include Makefile.include
+
+INSTALLROOT	?=	$(PWD)
+BINDIR	?=	$(INSTALLROOT)/bin
+DOCDIR	?=	$(INSTALLROOT)/manual/docs
+LIBDIR	?=	$(INSTALLROOT)/bin
+INCDIR	?=	$(INSTALLROOT)/include
+DETAILDOC	?=	$(INSTALLROOT)/docs
+ 
+WD				=	$(shell pwd)
+LIBRARYDIR		=	$(WD)/slsDetectorSoftware
+LIBRARYRXRDIR 		= 	$(WD)/slsReceiverSoftware
+CLIENTDIR		=	$(LIBRARYDIR)/slsDetectorClient
+GUIDIR			=	$(WD)/slsDetectorGui
+RECEIVERDIR		=	$(LIBRARYRXRDIR)
+CALWIZDIR		=	$(WD)/calibrationWizards
+MANDIR			=	$(WD)/manual
+CALIBDIR		=	$(WD)/slsDetectorCalibration
+MANAPIDIR		=	$(MANDIR)/manual-api
+
+TABSPACE		:=	"\t"
+
+ 
+INCLUDES=-I. -I$(LIBRARYDIR)/commonFiles -I$(LIBRARYDIR)/slsDetector -I$(LIBRARYDIR)/usersFunctions -I$(LIBRARYDIR)/multiSlsDetector -I$(LIBRARYDIR)/slsDetectorUtils -I$(LIBRARYDIR)/slsDetectorCommand -I$(LIBRARYDIR)/slsDetectorAnalysis -I$(LIBRARYDIR)/slsReceiverInterface  -I$(LIBRARYRXRDIR)/include -I$(LIBRARYDIR)/threadFiles -I$(LIBRARYDIR)/sharedMemory -I$(ASM)
+
+INCLUDESRXR += -I. -I$(LIBRARYRXRDIR)/include -I$(CALIBDIR) -I$(ASM) 
+#LIBFLAGRXR += 
+
+$(info )
+$(info #######################################)
+$(info #   In slsDetectorsPackage Makefile   #)
+$(info #######################################)
+$(info )
+
+
+.PHONY: all nonstatic static lib libreceiver textclient receiver gui stextclient sreceiver
+
+#all: lib textclient  receiver gui 
+all: textclient  receiver gui 
+
+nonstatic: lib libreceiver textclient receiver  gui 
+
+static: lib  libreceiver stextclient sreceiver gui 
+
+
+lib:
+	cd $(LIBRARYDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
+
+libreceiver:
+	cd $(LIBRARYRXRDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+
+
+stextclient: slsDetectorClient_static
+
+slsDetectorClient: textclient
+
+slsDetectorClient_static: #lib
+	cd  $(CLIENTDIR) && $(MAKE) static_clients FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+		
+textclient: #lib
+	cd  $(CLIENTDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+	
+slsReceiver: receiver
+
+slsReceiver_static: receiver
+
+receiver: #libreceiver
+#	cd  $(RECEIVERDIR) && $(MAKE) receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+	cd  $(RECEIVERDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+	cd  $(MANAPIDIR) && $(MAKE) slsMultiReceiver
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+		
+sreceiver: #libreceiver
+	cd  $(RECEIVERDIR) && $(MAKE)  static_receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+
+slsDetectorGUI: #lib
+	cd  $(GUIDIR) && $(MAKE) DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' INCLUDES='$(INCLUDES)' LDFLAGDET='$(LDFLAGDETONLY)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+	
+calWiz: 
+	cd  $(CALWIZDIR) && $(MAKE)  DESTDIR=$(BINDIR) #FLAGS=$(FLAGS)  LDFLAGDET=$(LDFLAGDET) INCLUDES=$(INCLUDES)
+
+
+
+gui: slsDetectorGUI
+
+
+doc:
+	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
+	cd manual && make all DESTDIR=$(DOCDIR)
+
+htmldoc:
+	make doc
+	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
+	cd manual && make html DESTDIR=$(DOCDIR)
+	
+detaildoc: createdocs docspdf docshtml removedocs
+
+createdocs: $(LIBRARYDIR)/doxy.config
+	doxygen $(LIBRARYDIR)/doxy.config	
+
+docspdf: 
+	cd slsDetectorPackageDocs/latex && make 
+	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
+	$(shell test -d $(DETAILDOC)/pdf || mkdir -p $(DETAILDOC)/pdf)
+	mv slsDetectorPackageDocs/latex/refman.pdf $(DETAILDOC)/pdf/slsDetectorPackageDocs.pdf
+
+docshtml: 
+	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
+	$(shell test -d $(DETAILDOC)/html || mkdir -p $(DETAILDOC)/html)
+	$(shell test -d $(DETAILDOC)/html/slsDetectorPackageDocs && rm -r $(DETAILDOC)/html/slsDetectorPackageDocs)
+	mv slsDetectorPackageDocs/html $(DETAILDOC)/html/slsDetectorPackageDocs
+	
+removedocs:
+	rm -rf 	slsDetectorPackageDocs;
+
+
+clean:
+	cd $(BINDIR) && rm -rf sls_detector_* slsDetectorGui slsReceiver angularCalibrationWizard energyCalibrationWizard 
+	cd $(LIBDIR) && rm -rf libSlsDetector.so libSlsDetector.a libSlsReceiver.so libSlsReceiver.a 
+	cd $(LIBRARYDIR) && $(MAKE) clean 
+	cd $(LIBRARYRXRDIR) && $(MAKE) clean 
+	cd $(CLIENTDIR) && $(MAKE) clean
+	cd $(GUIDIR) && $(MAKE) clean
+	cd $(CALWIZDIR) && $(MAKE) clean
+	cd manual && $(MAKE) clean
+	cd $(DOCDIR) && rm -rf * 
+	rm -rf 	slsDetectorPackageDocs;
+	rm -rf $(DETAILDOC)
+	rm -rf $(MANAPIDIR)/slsMultiReceiver
+
+
+#install_lib: 
+#	cd $(LIBRARYDIR) && $(MAKE) install DESTDIR=$(LIBDIR) INCLUDES=$(INCLUDES)
+#	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR)
+
+mythen_virtual:
+	cd $(LIBRARYDIR) && $(MAKE) mythenVirtualServer DESTDIR=$(BINDIR)
+
+
+gotthard_virtual:
+	cd $(LIBRARYDIR) && $(MAKE) gotthardVirtualServer DESTDIR=$(BINDIR)
+
+
+install_client: textclient slsReceiver
+
+install_gui: gui
+
+confinstall:
+	make conf;\
+	make install
+
+install_lib: 
+	make lib;\
+	make libreceiver; \
+	make textclient; \
+	make slsReceiver; \
+	make doc; \
+	make htmldoc; \
+	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR); \
+	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
+
+install: 
+	make install_lib; \
+	make gui; \
+	make calWiz; \
+	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);\
+	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
+
+conf:
+	set -e; \
+	. ./configure; \
+	@echo "INSTALLROOT is $(INSTALLROOT)"
+	@echo "BINDIR is $(BINDIR)"
+	@echo "LIBDIR is $(LIBDIR)"
+	@echo "INCDIR is $(INCDIR)"
+	@echo "DOCDIR is $(DOCDIR)"
+
+
+help:
+	@echo "Targets:"
+	@echo "make all 		compile library,  text clients, data reciever"
+	@echo "make lib 		compile library"
+	@echo "make libreceiver 		compile receiver library"
+	@echo "make textclient		compile the slsDetectorClient dynamically linking the libraries"
+	@echo "make stextclient 		compile slsDetectorClient statically linking the libraries"
+	@echo "make receiver		compile the slsReciever dynamically linking the libraries"
+	@echo "make sreceiver		compile the slsReciever statically linking the libraries"
+	@echo "make gui			compile slsDetectorGUI - requires a working Qt4 and Qwt installation"
+	@echo "make calWiz 		compile the calibration wizards - requires a working Root installation"
+	@echo "make doc			compile pdf documentation"
+	@echo "make htmldoc		compile html (and pdf) documentation"
+	@echo "make install_lib         installs the libraries, the text clients, the documentation and the includes for the API"
+	@echo "make install             installs all software, including the gui, the cal wizards and the includes for the API"
+	@echo "make confinstall         installs all software, including the gui, the cal wizards and the includes for the API, prompting for the install paths"
+	@echo "make clean              	remove object files and executables"
+	@echo "make help               	lists possible targets"
+	@echo ""
+	@echo ""
+	@echo "Makefile variables"
+	@echo "DEBUG=1,2		 set debug level to 1 (VERBOSE) or 2 (VERYVERBOSE)"
+	@echo ""
+	@echo ""
+	@echo "Variables -  to change them run <source configure> :"
+	@echo "INSTALLROOT=<yourdir>:    installation root di	r, default $PWD"
+	@echo "BINDIR=<yourbin>:         binary installation dir below INSTALLROOT, default bin"
+	@echo "LIBDIR=<yourlib>:         library installation dir below INSTALLROOT, default lib"
+	@echo "INCDIR=<yourincludes>:    header installation dir below INSTALLROOT, default include"
+	@echo "DOCDIR=<yourdoc>:         documentation installation dir below INSTALLROOT, default doc"

Makefile.include

@@ -0,0 +1,58 @@
+##############################################################
+# Generic 
+##############################################################
+
+CC = g++
+CXX = $(CC)
+ASM=$(shell echo "/lib/modules/`uname -r`/build/include")
+LDFLAGDETONLY = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector 
+LDFLAGDET = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread
+LDFLAGRXR = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread
+FLAGS= -Wall  -pthread  #-DEIGER_DEBUG2
+# -DVERBOSE 
+
+# Setting up the verbose flags
+ifeq ($(DEBUG),1)
+     FLAGS = -Wall -DVERBOSE
+endif
+ifeq ($(DEBUG),2)
+     FLAGS = -Wall -DVERYVERBOSE
+endif
+
+##############################################################
+# HDF5 specific. Set this to yes, if you want to compile
+# HDF5 code: in this case, you need HDF5 libraries
+##############################################################   
+
+HDF5 = no
+HDF5_DIR = /opt/hdf5v1.10.0
+
+ifeq ($(HDF5),yes)
+	LDFLAGRXR = -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L$(HDF5_DIR)/lib  -Wl,-rpath=$(HDF5_DIR)/lib -lhdf5 -lhdf5_cpp -lsz -lz -DHDF5C -L/usr/lib64/ -pthread
+	INCLUDESRXR = -I$(HDF5_DIR)/include
+endif	
+
+
+##############################################################
+# ROOTSLS specific. Set this to yes, if you want to compile
+# ROOTSLS code: in this case, you need also root libraries
+##############################################################   
+
+ROOTSLS = no
+
+ROOTFLAGS = $(shell root-config --cflags --glibs) -DMYROOT1   #-DALLFILE_DEBUG #-DMYROOT1 
+
+ifeq ($(ROOTSLS),yes)
+     LDFLAGRXR = -L$(LIBDIR) -lSlsReceiver $(ROOTFLAGS) -DROOTSLS
+endif
+
+
+define colorecho
+      @tput setaf 6
+      @echo $1
+      @tput sgr0
+endef
+
+
+
+

README.md

@@ -75,13 +75,13 @@ Use cmake to create out-of-source builds, by creating a build folder parallel to
     $ cd ..
     $ mkdir slsDetectorPackage-build
     $ cd slsDetectorPackage-build
-    $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=OFF 
+    $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=OFF 
     $ make
 ```
 
 Use the following as an example to compile statically and using specific hdf5 folder
 ```
-    $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=ON
+    $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=ON
  ```  
 After compiling, the libraries and executables will be found at `bin` directory
 ```

RELEASE.txt

@@ -0,0 +1,508 @@
+SLS Detector Package 4.0.0 released on 27.09.2018
+=================================================
+
+
+
+INTRODUCTION
+
+	This document describes the differences between 4.0.0 and 3.1.4 releases.
+
+	Download
+	--------
+	
+	The Source Code (Default C++ API):
+		 https://github.com/slsdetectorgroup/slsDetectorPackage
+		 
+	The Conda Lib Package:
+		https://github.com/slsdetectorgroup/sls_detector_lib
+		
+	The Conda GUI Package:
+		https://github.com/slsdetectorgroup/sls_detector_gui	
+		
+	The Python Interface (including the package):
+    	https://github.com/slsdetectorgroup/sls_detector
+	
+	
+	Documentation
+	-------------
+	
+	Manual (HTML & PDF):
+		https://www.psi.ch/detectors/documentation
+		slsDetectorPackage/manual/docs/
+		
+	Command Line Documentation:
+		manual/docs/html/slsDetectorClientDocs/index.html
+		manual/docs/pdf/slsDetectorClientDocs.pdf
+		
+	C++ API Documentation:
+		manual/docs/html/slsDetectorUsersDocs/index.html
+		manual/docs/pdf/slsDetectorUsersDocs.pdf
+		
+	C++ API Example:
+		manual/manual-api/mainClient.cpp
+		manual/manual-api/mainReceiver.cpp
+		
+	Python API Documentation:
+		https://slsdetectorgroup.github.io/sls_detector/
+		
+	Further Documentation:
+		https://www.psi.ch/detectors/users-support
+		
+	
+	Support
+	-------
+
+	General Software related:
+		dhanya.thattil@psi.ch
+		anna.bergamaschi@psi.ch
+		
+	Python related:
+		erik.frojdh@psi.ch
+
+
+
+CONTENTS
+
+	1.	Firmware Requirements
+	2.	Changes in User Interface
+	3.	New/Modified Commands
+	4.	Other New Features
+	5.	Resolved Issues
+	6.	Known Issues
+	7.	Next Major Release Plans
+
+
+
+1. Firmware Requirements
+========================
+
+    	Gotthard
+    	========   
+    	Minimum compatible version  : 11.01.2013
+    	Latest version              : 08.02.2018 (50um and 25um Master)
+                                      09.02.2018 (25 um Slave) 
+    	Eiger
+    	=====  
+    	Minimum compatible version  : 22
+    	Latest version              : 22
+        
+    	Jungfrau
+    	========       
+    	Minimum compatible version  : 15.06.2018
+    	Latest version              : 15.06.2018
+
+    	
+    	Detector Upgrade
+    	================
+    	Gotthard	Cannot be upgraded remotely. Requires programming via USB blaster
+    	Eiger		Can be upgraded remotely via bit files
+    	Jungfrau	Can be upgraded remotely using sls_detector_put programfpga <pof>
+    	
+    	Instructions available at
+    	https://www.psi.ch/detectors/installation-instructions
+    	under Detector Upgrade -> [Detector Type] -> Firmware. 
+    	
+    	 
+	Please refer to the link below for more details on the firmware versions.
+	https://www.psi.ch/detectors/firmware.
+		
+
+
+2. Changes in User Interface
+============================
+	
+	Client
+	------
+	
+	1.	Shared Memory:
+	
+		POSIX shared memory has been implemented and they are typically created in
+		/dev/shm/ folder.
+		
+		A multiSlsDetector object will create a shared memory segment with naming style:
+		slsDetectorPackage_x_[_z]
+		and an slsDetector object will create a shared memory segment with naming style:
+		slsDetectorPackage_x_sls_y[_z]
+		 	
+		where
+		x is the multi detector id
+		y is the sls detector id
+		z is the environment variable SLSDETNAME, if set.
+		They can be deleted directly.
+		
+		Environment variable SLSDETNAME included for user-friendliness
+		of using 2 different detectors from the same client pc. One needn't use
+		different multi detector id if the SLSDETNAME is different for both consoles.
+		
+		Constructor will fail if shared memory size is different (different package
+		releases/detectors). Loading config file cleans shared memory.
+
+
+	2.	Exceptions in constructors:
+	
+		All constructors that have an error throws an exception. For this release,
+		this is caught within the package and interfaced as error codes or messages
+		to the users using command line or API.
+		
+		As a result:
+		- slsDetectorsUsers constructor signature now includes a success flag.
+		- If one uses multiSlsDetector, slsDetector, ZmqSocket classes directly, 
+		  catch exceptions from constructors.
+		- In future releases, the exception will be thrown 
+		  outside the package for the users to handle it.
+		  
+		  
+	3.	API Compatibility:
+	
+		Client now checks API version of Detector Server - Client and Receiver - Client
+		when connecting for the first time to detector server or receiver server
+		and the online flags have not been set in shm. 
+		
+		Upon failure, error messages will ensue and further commands will not 
+		be executed. Detector servers referred to are only for Eiger, Jungfrau and Gotthard.
+		
+		Previously, the detector server would exit on mismatched Firmware-Detector
+		server mismatch. They now wait for client to ask for compatibility check,
+		which is done the first time client connects to the detector and the
+		online flag in shm has not been set.
+		
+		
+	4.	Commands "type", "id" and "replace" are removed.
+		  
+		  
+	Receiver
+	--------
+	
+	1.	Reciever Header Structure in file writing and call back:
+	
+		sls_receiver_header structure added to sls_receiver_defs.h for image headers 
+		in file writing. 
+		
+		#define MAX_NUM_PACKETS	512
+		typedef std::bitset<MAX_NUM_PACKETS> sls_bitset;
+		typedef struct {
+			sls_detector_header detHeader;	/**< is the detector header */
+			sls_bitset packetsMask;			/**< is the packets caught bit mask */
+		} sls_receiver_header;
+		
+		It includes the detector header structure + bitmask of 512 bits, 
+		where each bit represents a packet caught. This is useful in saving time 
+		in writing to file by not padding missing packets and still retaining useful data.
+		
+		The binary and HDF5 writer version number changed from 1.0 to 2.0. 
+		The detector header version remains as 1.0.
+		
+		registerCallBackRawDataReady modified to give this structure pointer,
+		instead of individual structure member pointers.
+		
+		
+	2.	ZmqSocket class:
+	
+		If one uses ZmqSocket.h, then the json header has to be parsed outside 
+		the class to allow the user to remove the restriction in extracting all data
+		from the json header.
+
+
+	3.	Receiver Call back with modified size:
+	
+		registerCallBackRawDataModifyReady call back that is similar to the receiver 
+		registerCallBackRawDataReady has been added to allow the call back to 
+		specify an updated size of image after call back. This is in view to process
+		an image in call back (including extract only a region of the image) and 
+		provide this updated size in callback. This new resized/processed image
+		will be written to file or streamed out via zmq. This is useful in ROI
+		selection in the receiver.
+
+		This also means that the call back is now called before writing to file.
+
+
+
+3. New/Modified Commands 
+========================
+	
+	Client
+	------
+
+	1.	add (modified): 
+		appends detector to end of multi detector list.
+
+	2.	replace: 
+		sets hostname/ip address for a single detector.
+
+	3.	user: 
+		get user details from shared memory.
+
+	4.	checkdetversion: 
+		checks client version compatibility with detector server.
+
+	5.	checkrecversion: 
+		checks client version compatibility with receiver server.
+		
+	
+	Receiver
+	--------
+	
+	1.	rx_zmqip:	
+		sets/gets the zmq (TCP) ip of the receiver from where data is streamed 
+		out from. (Eg. to the gui or intermediate process). By default, it is 
+		the same as the zmqip.
+	
+	2.	zmqip: 
+		sets/gets the zmq (TCP) ip, where client listens to, to reconstuct images. 
+		(Eg. from receiver or intermediate process). By default, it is the same 
+		as rx_zmqip.
+	  		 	
+	3.	rx_jsonaddheader:
+		sets/gets additional json header to be streamed out with the zmq from 
+		receiver. Default is empty. Eg. p rx_jsonaddheader \"what\":\"nothing\"
+		
+	4.	r_discardpolicy:
+		sets/gets the frame discard policy in the receiver. 
+		nodiscard - no discard (default), 
+		discardempty - discard only empty frames, 
+		discardpartial - discard any partial frame(fastest)
+		
+	5.	r_padding:
+		sets/gets the frame padding in the receiver. 
+		0 does not pad partial frames(fastest), 
+		1 (default) pads partial frames.
+		One can look at bitmask in the sls_receiver_header to process the unpadded
+		partial	frames later.
+		
+	6.	activate (modified):
+		Extra option added to pad or unpad images in receivers when deactivated.
+		activate i [padding option], where i is activate/deactivate	and padding 
+		option is "padding" (default) or "nopadding".
+		
+	7.	rx_udpsocksize:
+		sets/gets the UDP socket buffer size. Already attempts to set by default 
+		to 100mb, 2gb for Jungfrau. Does not remember custom values	in client 
+		shared memory, so must be initialized each time after setting receiver 
+		hostname in config file.
+		
+	8.	rx_realudpsocksize:
+		gets the actual UDP socket buffer size. Usually double the set udp socket 
+		buffer size due to kernel bookkeeping.
+	
+	9.	r_framesperfile:
+		sets/gets the frames per file in receiver. 0 means infinite or all frames 
+		in a single file. Default of Eiger changed from 2k to 10k.
+		
+
+	Eiger Specific
+	--------------
+	
+	1.	status trigger:
+		To trigger internally via software, one can use "status trigger".
+		
+	2.	subdeadtime:
+		sets/gets sub frame dead time in s in 32 bit mode. Subperiod is	set in 
+		the detector by subexptime + subdeadtime. This value is	normally a 
+		constant set by an expert catered to individual detector modules in the 
+		config file. Receiver files writes master file metadata subperiod 
+		instead of subdeadtime.
+		
+	3.	gappixels:
+		enables/disables gap pixels in system (detector & receiver). 1 sets, 
+		0 unsets. In Receiver, 4 bit gap pixels mode is not implemented, but is 
+		implemented in client data call back. Gap pixels are at module level 
+		and not at multi module level.
+				
+	4.	measuredperiod:
+		gets the measured frame period (time between last frame and the	previous 
+		one) in s. Makes sense only for acquisitions of more than 1 frame.
+		
+	5.	measuredsubperiod:
+		gets the measured subframe period (time between last subframe and the 
+		previous one) in s in 32 bit mode.
+
+	6.	flags(modified):
+		extra flags "nooverflow" (default) and "overflow" for sub images in	32 
+		bit mode. If set to overflow, it will set MSB of pixel data high if 
+		there was any saturation in any of the sub images 32 bit mode.
+		
+				
+	Jungfrau Specific
+	-----------------
+	
+	1.	storagecells:
+		sets/gets number of additional storage cells per acquisition. For very 
+		advanced users only. Range: 0-15. Default: 0. 
+		The #images = #frames * #cycles * (#storagecells +1).
+		
+	2.	storage_start:
+		sets/gets the storage cell that stores the first acquisition of the	series. 
+		For very advanced users only. Range: 0-15. Default: 15(0xf).  
+
+
+
+4. Other New Features
+=====================
+
+	Client
+	------
+	
+	1.	(Jungfrau & Gotthard) Settingsdir and caldir is removed from config file.
+		Default dacs are stored in detector server. Hence, these folders
+		are also removed from slsDetectorPackage/settingsdir. Eiger and Mythen 
+		continue to have them.
+		
+	2.	Depending on 1d position of detectors and detsizechan in config file,
+		row and column (previously xcoord and ycoord) are given to detector 
+		servers (Eiger and Jungfrau) to encode into the udp header.
+		
+	3.	(Eiger) Setting threshold energy changes such as CAL dac is irrelevant 
+		when interpolating between two energies and VRS dac is interpolated, not copied.
+		
+	4.	Users API updated with the following functions:
+		-	setReceiverFramesDiscardPolicy
+		-	setReceiverPartialFramesPadding
+		-	setReceiverFramesPerFile
+		-	sendSoftwareTrigger
+		-	setSubFrameExposureDeadTime
+		-	setSubFrameExposureTime
+		-	enableGapPixels
+		-	getMeasuredPeriod
+		-	getMeasuredSubFramePeriod
+		-	setOverflowMode
+		-	setNumberOfStorageCells
+		-	setStoragecellStart
+		-	setThresholdEnergy (overloaded)
+		-	resetFramesCaughtInReceiver
+		-	setReceiverFifoDepth
+		-	setFlowControl10G
+		-	setTenGigabitEthernet
+		-	getNMods
+		-	setReceiverDataStreamingOutIP
+		-	setClientDataStreamingInIP
+		
+	SlsReceiver
+	-----------
+	
+	1.	slsMultiReceiver executable added that creates multiple receiver child processes.
+		./slsMultiReceiver [start_tcp_port] [num_receivers] [1 for call back, 0 for none]
+		
+	2.	Default row and column (previously xcoord and ycoord) are hardcoded 
+		for missing packets. (Eiger and Jungfrau)
+		
+
+	Gui
+	---
+	
+	1.	(Jungfrau) Gain plot included. Option under 2D options in Plot tab.
+	
+	2.	Option to maintain aspect ratio
+	
+	3.	Start and Stop separated to prevent multiple click syndrome.
+	
+
+	Detector Server
+	---------------
+	
+	1. 	(Jungfrau) To use programfpga command, one must start server with -update
+		mode and then restart server without -update mode.
+	
+	2.	(Jungfrau) ASIC Timer configured at server start up and changed a few
+		startup values for firmware v0.7 such as adc phase, ADC_PORT_INVERT_VAL
+		and ADC offset half speed value.
+		
+	3.	(Jungfrau) Minimum exposure time of 50 us was implemented.
+	
+	4. 	(Eiger and Jungfrau) They can be configured to have x and y coord values
+		of the detector in their udp header.
+
+
+
+
+5. Resolved Issues
+==================
+
+	Client
+	------
+	memory leak for multi threading
+	
+	1.	Compiler flag -std=c++98 enforced. Debug flag removed.
+	
+	2.	If trimen gives different list from different detectors, it returns a -1.
+	
+	3.	Version format for each submodule of the package changed to just date YYMMDD.
+		Users class fixed to give correct version, instead of -1.
+		
+	4.	Getting settings in users class gave -1. Fixed now.
+
+	5.	(Jungfrau) Programming FPGA now creates the rawbin file from pof in tmp
+		rather than source file location (for permission issues).
+		
+	6.	(Gotthard) ROI segmentation fault fixed.
+		
+	Receiver
+	--------
+	
+	1.	Silent feature of receiver fixed.
+	
+	2. 	Socket descriptor misused earlier for success flag, instead exceptions
+		used that are handled inside the package.
+
+	3.	Global optind variable initialized to instantiate multiple receivers 
+		in same process. Also removed static members to enable this feature.
+		
+	4.	Socket buffer size attempts to set for each acquiistion and provide
+		warning if no capabilities. Warnings can be removed using instruction with
+		error provided. Default Jungfrau UDP socket buffer size if 2 GB, default is 
+		100 MB.
+		
+	5.	Refactored code a bit for performance and robustness, blocking push 
+		in buffer between listener and dataprocessor
+
+	
+	Detector Server
+	---------------
+	
+	1.	(Jungfrau) Stop server also mapped during a reset. Reading power status
+		instead of user input register for power.
+	
+	2.	(Eiger) Bug fix for saving trimbits to file (Advanced users).
+	
+	3.	(Gotthard 25um) config.txt is not read again after detector startup,
+		no matter the number of times the detector server is restarted. 
+
+	
+6. Known Issues
+===============
+
+	Receiver
+	--------
+	
+	1. 	HDF5 compression and filters are not implemented yet.
+	
+	
+	Detector Server
+	---------------
+	
+	1.	(Eiger) Registers mapped differently between firmware v20 and v22.
+		So, please ensure correct on-board server before switching between
+		firmware versions. Else one cannot ping it anymore. Will need to flash firmware
+		again to recover.
+		
+	2.	(Gotthard) To switch back to all ADC from single ADC ROI, one must take
+		even number of images for the receiver to understand complete images.
+		This will be fixed in the next firmware upgrade.
+	
+	
+	
+7. Next Major Release Plans
+===========================
+
+	Client
+	------
+	
+	1.	Exceptions thrown to the user to be handled.
+	
+	2. 	Compilation using c++11.
+	
+	3.	Support of Mythen II restricted to this major and its minor releases.
+	
+	4.	Restructuring and refactoring of client code. 
+
+
+

cleansharedmemory.sh

@@ -0,0 +1 @@
+rm /dev/shm/slsDetectorPackage*;

cmake/FindZeroMQ.cmake

@@ -1,112 +0,0 @@
-
-# This file is originally from https://github.com/zeromq/azmq and distributed 
-# under Boost Software Lincese 1.0
-# Boost Software License - Version 1.0 - August 17th, 2003
-
-# Permission is hereby granted, free of charge, to any person or organization
-# obtaining a copy of the software and accompanying documentation covered by
-# this license (the "Software") to use, reproduce, display, distribute,
-# execute, and transmit the Software, and to prepare derivative works of the
-# Software, and to permit third-parties to whom the Software is furnished to
-# do so, all subject to the following:
-
-# The copyright notices in the Software and this entire statement, including
-# the above license grant, this restriction and the following disclaimer,
-# must be included in all copies of the Software, in whole or in part, and
-# all derivative works of the Software, unless such copies or derivative
-# works are solely in the form of machine-executable object code generated by
-# a source language processor.
-
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
-# SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
-# FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
-# ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
-# DEALINGS IN THE SOFTWARE.
-# --------------------------------------------------------------------------------
-
-# Find ZeroMQ Headers/Libs
-
-# Variables
-# ZMQ_ROOT - set this to a location where ZeroMQ may be found
-#
-# ZeroMQ_FOUND - True of ZeroMQ found
-# ZeroMQ_INCLUDE_DIRS - Location of ZeroMQ includes
-# ZeroMQ_LIBRARIES - ZeroMQ libraries
-
-include(FindPackageHandleStandardArgs)
-
-if (NOT ZMQ_ROOT)
-    set(ZMQ_ROOT "$ENV{ZMQ_ROOT}")
-endif()
-
-if (NOT ZMQ_ROOT)
-    find_path(_ZeroMQ_ROOT NAMES include/zmq.h)
-else()
-    set(_ZeroMQ_ROOT "${ZMQ_ROOT}")
-endif()
-
-find_path(ZeroMQ_INCLUDE_DIRS NAMES zmq.h HINTS ${_ZeroMQ_ROOT}/include)
-
-if (ZeroMQ_INCLUDE_DIRS)
-    set(_ZeroMQ_H ${ZeroMQ_INCLUDE_DIRS}/zmq.h)
-
-    function(_zmqver_EXTRACT _ZeroMQ_VER_COMPONENT _ZeroMQ_VER_OUTPUT)
-        set(CMAKE_MATCH_1 "0")
-        set(_ZeroMQ_expr "^[ \\t]*#define[ \\t]+${_ZeroMQ_VER_COMPONENT}[ \\t]+([0-9]+)$")
-        file(STRINGS "${_ZeroMQ_H}" _ZeroMQ_ver REGEX "${_ZeroMQ_expr}")
-        string(REGEX MATCH "${_ZeroMQ_expr}" ZeroMQ_ver "${_ZeroMQ_ver}")
-        set(${_ZeroMQ_VER_OUTPUT} "${CMAKE_MATCH_1}" PARENT_SCOPE)
-    endfunction()
-
-    _zmqver_EXTRACT("ZMQ_VERSION_MAJOR" ZeroMQ_VERSION_MAJOR)
-    _zmqver_EXTRACT("ZMQ_VERSION_MINOR" ZeroMQ_VERSION_MINOR)
-    _zmqver_EXTRACT("ZMQ_VERSION_PATCH" ZeroMQ_VERSION_PATCH)
-
-    message(STATUS "ZeroMQ version: ${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}.${ZeroMQ_VERSION_PATCH}")
-
-    # We should provide version to find_package_handle_standard_args in the same format as it was requested,
-    # otherwise it can't check whether version matches exactly.
-    if (ZeroMQ_FIND_VERSION_COUNT GREATER 2)
-        set(ZeroMQ_VERSION "${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}.${ZeroMQ_VERSION_PATCH}")
-    else()
-        # User has requested ZeroMQ version without patch part => user is not interested in specific patch =>
-        # any patch should be an exact match.
-        set(ZeroMQ_VERSION "${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}")
-    endif()
-
-    if (NOT ${CMAKE_CXX_PLATFORM_ID} STREQUAL "Windows")
-        find_library(ZeroMQ_LIBRARIES NAMES zmq HINTS ${_ZeroMQ_ROOT}/lib)
-    else()
-        find_library(
-            ZeroMQ_LIBRARY_RELEASE
-            NAMES
-                libzmq
-                "libzmq-${CMAKE_VS_PLATFORM_TOOLSET}-mt-${ZeroMQ_VERSION_MAJOR}_${ZeroMQ_VERSION_MINOR}_${ZeroMQ_VERSION_PATCH}"
-            HINTS
-                ${_ZeroMQ_ROOT}/lib
-            )
-
-        find_library(
-            ZeroMQ_LIBRARY_DEBUG
-            NAMES
-                libzmq_d
-                "libzmq-${CMAKE_VS_PLATFORM_TOOLSET}-mt-gd-${ZeroMQ_VERSION_MAJOR}_${ZeroMQ_VERSION_MINOR}_${ZeroMQ_VERSION_PATCH}"
-            HINTS
-                ${_ZeroMQ_ROOT}/lib)
-
-        # On Windows we have to use corresponding version (i.e. Release or Debug) of ZeroMQ because of `errno` CRT global variable
-        # See more at http://www.drdobbs.com/avoiding-the-visual-c-runtime-library/184416623
-        set(ZeroMQ_LIBRARIES optimized "${ZeroMQ_LIBRARY_RELEASE}" debug "${ZeroMQ_LIBRARY_DEBUG}")
-    endif()
-endif()
-
-find_package_handle_standard_args(ZeroMQ FOUND_VAR ZeroMQ_FOUND
-    REQUIRED_VARS ZeroMQ_INCLUDE_DIRS ZeroMQ_LIBRARIES
-    VERSION_VAR ZeroMQ_VERSION)
-
-if (ZeroMQ_FOUND)
-    mark_as_advanced(ZeroMQ_INCLUDE_DIRS ZeroMQ_LIBRARIES ZeroMQ_VERSION
-        ZeroMQ_VERSION_MAJOR ZeroMQ_VERSION_MINOR ZeroMQ_VERSION_PATCH)
-endif()

cmake/package_config.cmake

@@ -1,31 +0,0 @@
-# This cmake code creates the configuration that is found and used by
-# find_package() of another cmake project
-
-# get lower and upper case project name for the configuration files
-
-# configure and install the configuration files
-include(CMakePackageConfigHelpers)
-
-configure_package_config_file(
-  "${CMAKE_SOURCE_DIR}/cmake/project-config.cmake.in"
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
-  INSTALL_DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER}
-  PATH_VARS CMAKE_INSTALL_DIR)
-
-write_basic_package_version_file(
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
-  VERSION ${PROJECT_VERSION}
-  COMPATIBILITY SameMajorVersion)
-
-install(FILES
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
-  COMPONENT devel
-  DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER})
-
-if (PROJECT_LIBRARIES OR PROJECT_STATIC_LIBRARIES)
-  install(
-    EXPORT "${TARGETS_EXPORT_NAME}"
-    FILE ${PROJECT_NAME_LOWER}-targets.cmake
-    DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER})
-endif ()

cmake/project-config.cmake.in

@@ -1,24 +0,0 @@
-# Config file for @PROJECT_NAME_LOWER@
-#
-# It defines the following variables:
-#
-# @PROJECT_NAME_UPPER@_INCLUDE_DIRS     - include directory
-# @PROJECT_NAME_UPPER@_LIBRARIES        - all dynamic libraries
-# @PROJECT_NAME_UPPER@_STATIC_LIBRARIES - all static libraries
-
-@PACKAGE_INIT@
-
-include(CMakeFindDependencyMacro)
-
-set(SLS_USE_HDF5 "@SLS_USE_HDF5@")
-
-# Add optional dependencies here
-find_dependency(Threads)
-if (SLS_USE_HDF5)
-    find_dependency(HDF5)
-endif ()
-
-set_and_check(@PROJECT_NAME_UPPER@_CMAKE_INCLUDE_DIRS "@PACKAGE_CMAKE_INSTALL_DIR@")
-
-include("${CMAKE_CURRENT_LIST_DIR}/@TARGETS_EXPORT_NAME@.cmake")
-check_required_components("@PROJECT_NAME@")

cmake/project_version.cc.in

@@ -1,14 +0,0 @@
-#include "project_version.h"
-/// project version as major.minor.patch string
-const char* @PROJECT_NAME@_runtime_project_version(){ return "@PROJECT_VERSION@"; }
-/// package version as string, possibly with git commit: v1.2.3+4+g56789abc
-const char* @PROJECT_NAME@_runtime_package_version(){ return "@PACKAGE_VERSION@"; }
-/// project version as integer: major * 10000 + minor * 100 + patch
-int @PROJECT_NAME@_runtime_version_int()  { return @PROJECT_VERSION_INT@; }
-/// project version as integer: major
-int @PROJECT_NAME@_runtime_version_major(){ return @PACKAGE_VERSION_MAJOR@; }
-/// project version as integer: minor
-int @PROJECT_NAME@_runtime_version_minor(){ return @PACKAGE_VERSION_MINOR@; }
-/// project version as integer: patch
-int @PROJECT_NAME@_runtime_version_patch(){ return @PACKAGE_VERSION_PATCH@; }
-

cmake/project_version.cmake

@@ -1,154 +0,0 @@
-#
-# Sets PROJECT_VERSION and PACKAGE_VERSION
-#
-
-# Don't set PROJECT_VERSION to empty string when no VERSION is given to project() command.
-#if(POLICY CMP0048)
-#  cmake_policy(SET CMP0048 OLD)
-#endif()
-
-# Split a version number into separate components
-# version the version number to split
-# major variable name to store the major version in
-# minor variable name to store the minor version in
-# patch variable name to store the patch version in
-# extra variable name to store a version suffix in
-function(version_split version major minor patch extra)
-    string(REGEX MATCH "([0-9]+)\\.([0-9]+)\\.([0-9]+)(.*)?" version_valid ${version})
-    if(version_valid)
-        string(REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)(.*)?" "\\1;\\2;\\3;\\4" VERSION_MATCHES ${version})
-        list(GET VERSION_MATCHES 0 version_major)
-        set(${major} ${version_major} PARENT_SCOPE)
-        list(GET VERSION_MATCHES 1 version_minor)
-        set(${minor} ${version_minor} PARENT_SCOPE)
-        list(GET VERSION_MATCHES 2 version_patch)
-        set(${patch} ${version_patch} PARENT_SCOPE)
-        list(GET VERSION_MATCHES 3 version_extra)
-        set(${extra} ${version_extra} PARENT_SCOPE)
-    else(version_valid)
-        message(AUTHOR_WARNING "Bad version ${version}; falling back to 0 (have you made an initial release?)")
-        set(${major} "0" PARENT_SCOPE)
-        set(${minor} "0" PARENT_SCOPE)
-        set(${patch} "0" PARENT_SCOPE)
-        set(${extra} "" PARENT_SCOPE)
-    endif(version_valid)
-endfunction(version_split)
-
-##############################
-# get PROJECT_VERSION from git
-##############################
-find_program(GIT_CMD git)
-mark_as_advanced(GIT_CMD)
-if (GIT_CMD)
-    execute_process(COMMAND ${GIT_CMD} rev-parse --show-toplevel
-            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
-            OUTPUT_VARIABLE GIT_TOPLEVEL
-            ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
-endif()
-if (GIT_CMD AND NOT "${GIT_TOPLEVEL}" STREQUAL "")
-    execute_process(COMMAND ${GIT_CMD} rev-parse --short HEAD
-            WORKING_DIRECTORY ${GIT_TOPLEVEL}
-            OUTPUT_VARIABLE GIT_SHA1
-            OUTPUT_STRIP_TRAILING_WHITESPACE)
-    #message(STATUS "GIT_SHA1: " ${GIT_SHA1})
-    execute_process(COMMAND ${GIT_CMD} describe --match "*[0-9].[0-9]*" HEAD
-            WORKING_DIRECTORY ${GIT_TOPLEVEL}
-            OUTPUT_VARIABLE GIT_DESCRIBE
-            ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
-    #message(STATUS "GIT_DESCRIBE: " ${GIT_DESCRIBE})
-
-    if (GIT_DESCRIBE)
-        string(REGEX REPLACE "v?([0-9.]+).*" "\\1" GIT_VERSION ${GIT_DESCRIBE})
-        message(STATUS "GIT_VERSION: " ${GIT_VERSION})
-
-        # as package version we use the full version from git describe: 1.7.1+7+ge324c81
-        if (GIT_DESCRIBE MATCHES ".*-g.*")
-            # convert a git describe string to usable debian version, e.g. v1.7.1-7-ge324c81 to 1.7.1+7+ge324c81
-            string(REGEX REPLACE "v?([0-9]*.[0-9.]*).*-([0-9]*)-([a-g0-9]*)" "\\1+\\2+\\3" GIT_FULL_VERSION ${GIT_DESCRIBE})
-        else()
-            # current HEAD is git tag (i.e. releaase), directly use the version
-            set(GIT_FULL_VERSION ${GIT_VERSION})
-        endif()
-    else ()
-        # no (suitable) tag found
-        set(GIT_VERSION "0.0.0")
-        # get number of commits in repo
-        execute_process(COMMAND ${GIT_CMD} rev-list --count HEAD
-                WORKING_DIRECTORY ${GIT_TOPLEVEL}
-                OUTPUT_VARIABLE GIT_COMMIT_COUNT
-                OUTPUT_STRIP_TRAILING_WHITESPACE)
-        set(GIT_FULL_VERSION 0.0.0+${GIT_COMMIT_COUNT}+g${GIT_SHA1})
-    endif ()
-endif ()
-
-# get version from package.xml if it exists
-if (EXISTS "${PROJECT_SOURCE_DIR}/package.xml")
-    file(STRINGS "${PROJECT_SOURCE_DIR}/package.xml" PACKAGE_XML_VERSION_LINE REGEX <version>[0-9.]*</version>)
-    string(REGEX REPLACE .*<version>\([0-9.]*\)</version>.* \\1 PACKAGE_XML_VERSION "${PACKAGE_XML_VERSION_LINE}")
-    MESSAGE(STATUS "PACKAGE_XML_VERSION: " ${PACKAGE_XML_VERSION})
-endif ()
-
-# set version (if not already manually specified)
-# check versions from different sources and set actually used version
-if (NOT PROJECT_VERSION)
-    # set PROJECT_VERSION to MAJOR.MINOR.PATCH
-    # PACKAGE_VERSION can have extra info
-    if (GIT_VERSION)
-        set(PROJECT_VERSION ${GIT_VERSION})
-        set(PACKAGE_VERSION ${GIT_FULL_VERSION})
-    elseif (PACKAGE_XML_VERSION)
-        set(PROJECT_VERSION ${PACKAGE_XML_VERSION})
-        set(PACKAGE_VERSION ${PROJECT_VERSION})
-    else ()
-        message(WARNING "PROJECT_VERSION not set. Defaulting to 0.0.0")
-        set(PROJECT_VERSION "0.0.0")
-    endif ()
-endif ()
-if (NOT PACKAGE_VERSION)
-    message(WARNING "PACKAGE_VERSION not set! Falling back to (${PROJECT_VERSION})")
-    set(PACKAGE_VERSION ${PROJECT_VERSION})
-endif ()
-
-# warn if versions don't match
-if (GIT_VERSION AND NOT GIT_VERSION MATCHES ${PROJECT_VERSION})
-    message(WARNING "Version from git (${GIT_VERSION}) doesn't match PROJECT_VERSION (${PROJECT_VERSION})")
-endif()
-if (PACKAGE_XML_VERSION AND NOT PACKAGE_XML_VERSION MATCHES ${PROJECT_VERSION})
-    message(WARNING "Version from package.xml (${PACKAGE_XML_VERSION}) doesn't match PROJECT_VERSION (${PROJECT_VERSION})")
-endif()
-
-message(STATUS "PROJECT_VERSION: " ${PROJECT_VERSION})
-message(STATUS "PACKAGE_VERSION: " ${PACKAGE_VERSION})
-
-
-version_split(${PROJECT_VERSION} PACKAGE_VERSION_MAJOR PACKAGE_VERSION_MINOR PACKAGE_VERSION_PATCH extra)
-#message(STATUS "PACKAGE_VERSION_MAJOR: " ${PACKAGE_VERSION_MAJOR})
-#message(STATUS "PACKAGE_VERSION_MINOR: " ${PACKAGE_VERSION_MINOR})
-#message(STATUS "PACKAGE_VERSION_PATCH: " ${PACKAGE_VERSION_PATCH})
-
-# generate an integer version number: major * 10000 + minor * 100 + patch
-math(EXPR PROJECT_VERSION_INT "${PACKAGE_VERSION_MAJOR} * 10000 + ${PACKAGE_VERSION_MINOR} * 100 + ${PACKAGE_VERSION_PATCH}")
-
-# make PROJECT_VERSION available as define in the project source
-#add_definitions(-DPROJECT_VERSION="${PROJECT_VERSION}")
-#add_definitions(-DPROJECT_VERSION_INT=${PROJECT_VERSION_INT})
-#add_definitions(-DPACKAGE_VERSION="${PACKAGE_VERSION}")
-#add_definitions(-DPACKAGE_VERSION_MAJOR=${PACKAGE_VERSION_MAJOR})
-#add_definitions(-DPACKAGE_VERSION_MINOR=${PACKAGE_VERSION_MINOR})
-#add_definitions(-DPACKAGE_VERSION_PATCH=${PACKAGE_VERSION_PATCH})
-
-# set ABI version to major.minor, which will be used for the SOVERSION
-set(abiversion "${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}")
-
-# generate a version.h file in the binary output dir, don't forget to install it...
-string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UPPER)
-
-# These files provide compile-time and runtime version information about your project.
-# To offer the version info to the users of your library, you need to
-# adapt the following lines in your respective CMakeLists.txt:
-#   add_library(<yourlibraryname> SHARED <your code files> ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/project_version.cc)
-#   install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/project_version.h COMPONENT dev DESTINATION include/<your-include-dir>)
-# To use it within your library or tests you need to add the include directory:
-# > target_include_directories(yourtarget PUBLIC ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME})
-configure_file(${CMAKE_CURRENT_LIST_DIR}/project_version.h.in  ${PROJECT_NAME}/project_version.h @ONLY)
-configure_file(${CMAKE_CURRENT_LIST_DIR}/project_version.cc.in ${PROJECT_NAME}/project_version.cc @ONLY)

cmake/project_version.h.in

@@ -1,34 +0,0 @@
-#ifndef @PROJECT_NAME_UPPER@_VERSION_H_
-#define @PROJECT_NAME_UPPER@_VERSION_H_
-
-/// project version as major.minor.patch string
-#define @PROJECT_NAME_UPPER@_VERSION "@PROJECT_VERSION@"
-/// project version as integer: major * 10000 + minor * 100 + patch
-#define @PROJECT_NAME_UPPER@_VERSION_INT @PROJECT_VERSION_INT@
-#define @PROJECT_NAME_UPPER@_VERSION_MAJOR @PACKAGE_VERSION_MAJOR@
-#define @PROJECT_NAME_UPPER@_VERSION_MINOR @PACKAGE_VERSION_MINOR@
-#define @PROJECT_NAME_UPPER@_VERSION_PATCH @PACKAGE_VERSION_PATCH@
-/// package version as string, possibly with git commit: v1.2.3+4+g56789abc
-#define @PROJECT_NAME_UPPER@_PACKAGE_VERSION "@PACKAGE_VERSION@"
-
-///runtime versions, where the above values are linked into a lib and therefore reflect the version
-///of the library itself (not the version of the header at compile time of the user code)
-const char* @PROJECT_NAME@_runtime_project_version();
-const char* @PROJECT_NAME@_runtime_package_version();
-int @PROJECT_NAME@_runtime_version_int();
-int @PROJECT_NAME@_runtime_version_major();
-int @PROJECT_NAME@_runtime_version_minor();
-int @PROJECT_NAME@_runtime_version_patch();
-
-///Check consistency of runtime vs compile-time version number. I.e. the header used
-///for compilation was from the same version as the linked library.
-inline bool @PROJECT_NAME@_check_version_consistency(bool major_minor_only)
-{
-  return @PROJECT_NAME@_runtime_version_major() == @PROJECT_NAME_UPPER@_VERSION_MAJOR &&
-         @PROJECT_NAME@_runtime_version_minor() == @PROJECT_NAME_UPPER@_VERSION_MINOR &&
-         (major_minor_only ||
-          @PROJECT_NAME@_runtime_version_patch() == @PROJECT_NAME_UPPER@_VERSION_PATCH);
-}
-
-
-#endif

cmk.sh

@@ -116,21 +116,20 @@ done
 
 
 if [ $TEXTCLIENT -eq 0 ] && [ $RECEIVER -eq 0 ]  && [ $GUI -eq 0 ]; then
-#       CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=ON -DSLS_USE_GUI=ON "
-		CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=ON  "
+       CMAKE_POST+=" -DUSE_TEXTCLIENT=ON -DUSE_RECEIVER=ON -DUSE_GUI=ON "
        echo "Compile Option: TextClient, Receiver and GUI"
 else 
        if [ $TEXTCLIENT -eq 1 ]; then
-              CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON "
+              CMAKE_POST+=" -DUSE_TEXTCLIENT=ON "
                echo "Compile Option: TextClient"
        fi
        if [ $RECEIVER -eq 1 ]; then
-               CMAKE_POST+=" -DSLS_USE_RECEIVER=ON "
+               CMAKE_POST+=" -DUSE_RECEIVER=ON "
                echo "Compile Option: Receiver"
        fi
                                
        if [ $GUI -eq 1 ]; then
-               CMAKE_POST+=" -DSLS_USE_GUI=ON "
+               CMAKE_POST+=" -DUSE_GUI=ON "
                echo "Compile Option: GUI"
        fi
 fi
@@ -162,10 +161,10 @@ fi
 #hdf5 rebuild
 if [ $HDF5 -eq 1 ]; then
 	CMAKE_PRE+="HDF5_ROOT="$HDF5DIR
-	CMAKE_POST+=" -DSLS_USE_HDF5=ON "
+	CMAKE_POST+=" -DUSE_HDF5=ON "
 #normal mode rebuild
 else
-	CMAKE_POST+=" -DSLS_USE_HDF5=OFF "
+	CMAKE_POST+=" -DUSE_HDF5=OFF "
 fi
 
 

commitVersions.sh

@@ -0,0 +1,15 @@
+sh updateSvnVersion.sh
+
+cd slsDetectorGui
+git commit -a -m "updating versions"
+git push origin developer:developer
+
+cd ../slsDetectorSoftware
+git commit -a -m "updating versions"
+git push origin developer:developer
+
+cd ../slsReceiverSoftware
+git commit -a -m "updating versions"
+git push origin developer:developer
+
+cd ..

examples/bchip2modules.config

@@ -2,6 +2,9 @@ detsizechan 2560 1
 
 hostname bchip074+bchip075+
 
+#replace my_installation_path 
+settingsdir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
+caldir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
 
 0:extsig:0 trigger_in_rising_edge
 0:rx_tcpport 1954
@@ -11,6 +14,7 @@ hostname bchip074+bchip075+
 1:extsig:0 trigger_in_rising_edge
 1:rx_tcpport 1955
 1:rx_udpport 50002
+#1:detectorip 10.1.1.52
 1:vhighvoltage 0
 
 ##############################################################################
@@ -47,11 +51,11 @@ rx_datastream 1
 rx_hostname my_receiver_hostname
 rx_datastream 1
 outdir /tmp/
-
+angconv none
+threaded 1
 
 settings veryhighgain
 exptime 0.000005
 period 0.0001
 
-vhighvoltage 90
-
+vhighvoltage 90

examples/bchip2modules_pc8829.config

@@ -0,0 +1,61 @@
+detsizechan 2560 1
+
+hostname bchip074+bchip075+
+
+#replace my_installation_path 
+settingsdir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
+caldir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
+
+0:extsig:0 trigger_in_rising_edge
+0:rx_tcpport 1954
+0:rx_udpport 50001
+0:vhighvoltage 0
+
+1:extsig:0 trigger_in_rising_edge
+1:rx_tcpport 1955
+1:rx_udpport 50002
+#1:detectorip 10.1.1.52
+1:vhighvoltage 0
+
+##############################################################################
+#########
+######### Uncomment this part to use the gotthard25umZmq process
+#########
+##############################################################################
+
+# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
+#0:rx_zmqip my_receiver_hostname 
+#0:rx_zmqport 30003
+# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
+#0:zmqip my_client_hostname 
+#0:zmqport  40003
+
+# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
+#1:rx_zmqip my_receiver_hostname 
+#1:rx_zmqport 30004
+# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
+#1:zmqip  my_client_hostname 
+#1:zmqport  40004
+
+##############################################################################
+#########
+######### until here
+#########
+##############################################################################
+
+
+r_readfreq 1
+rx_datastream 1
+
+#replace my_receiver_hostname with the hostname of 1Gb IP of the machine where the receiver runs
+rx_hostname my_receiver_hostname
+rx_datastream 1
+outdir /tmp/
+angconv none
+threaded 1
+
+settings veryhighgain
+exptime 0.000005
+period 0.0001
+
+vhighvoltage 90

examples/howto_gotthatd_twomodules.txt

@@ -1,6 +1,6 @@
 Turn on the two receivers:
-slsReceiver -t1954 &
-slsReceiver -t1955 &
+slsReceiver --rx_tcpport 1954 &
+slsReceiver --rx_tcpport 1955 &
 
 Switch on the photon conversion on the receiver machine (replace my_receiver_hostname):
 gotthard25umZmq my_receiver_hostname 30003 my_receiver_hostname 40003 &
@@ -11,3 +11,4 @@ sls_detector_put config bchip2modules.config
 
 Start your measurements using the command line, the slsDetectorGui or the EPICS driver
 
+

examples/moench03_T1_lab.config

@@ -1,4 +1,4 @@
-hostname bchip085+
+hostname bchip011+
 
 patword 0000 0000000000000000
 patword 0001 0000000000000000
@@ -416,27 +416,30 @@ patwaittime2 0
 
 
 ####mcp2011
+#0:rx_tcpport 1955
 #0:rx_udpip 10.1.1.102
 #0:detectorip 10.1.1.19
-#0:rx_udpport 32410
+#0:rx_udpport 32411
 ####gui listening to 
-#zmqip 129.129.202.131
-#zmqport 30001
+#zmqip 129.129.202.106
+#zmqport 50001
 ####data streaming out of
 #rx_zmqip 10.1.2.103
-#rx_zmqport 30003
+#rx_zmqport 50003
+
 #0:rx_hostname mpc2011
 
-####mx-test-1
+####pcmoench01
+0:rx_tcpport 1977
 0:rx_udpip 10.1.1.100
 0:detectorip 10.1.1.19
 0:rx_udpport 32410
 ####gui listening to (on receiver pc)
 zmqip 129.129.202.92
-zmqport 30001
+zmqport 50001
 ####data streaming out of
 rx_zmqip 10.1.1.100
-rx_zmqport 30003
+rx_zmqport 50003
 0:rx_hostname pcmoench01
 
 
@@ -487,5 +490,3 @@ period 0.1
 outdir /scratch/
 enablefwrite 0
 
-
-

integrationTests/CMakeLists.txt

@@ -1,39 +0,0 @@
-MESSAGE( STATUS "CMAKE_CURRENT_SOURCE_DIR: " ${CMAKE_CURRENT_SOURCE_DIR} )
-MESSAGE( STATUS "PROJECT_SOURCE_DIR: " ${PROJECT_SOURCE_DIR} )
-
-
-
-include_directories(
-    ${PROJECT_SOURCE_DIR}/catch
-)
-
-if(SLS_USE_TESTS)
-    set(TEST_SOURCES
-        src/test-slsDetector.cpp
-        src/test.cpp
-    )
-    add_executable(detector_test ${TEST_SOURCES})
-    
-    target_link_libraries(detector_test 
-        slsDetectorShared
-        slsSupportLib
-        pthread
-        rt
-    )  
-    set_target_properties(detector_test PROPERTIES
-            RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-    )
-    add_executable(a src/a.cpp)
-
-    target_link_libraries(a 
-        slsDetectorShared
-        slsSupportLib
-        pthread
-        rt
-    )  
-    set_target_properties(a PROPERTIES
-        RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-    )
-
-endif()
-

integrationTests/src/a.cpp

@@ -1,94 +0,0 @@
-
-#include "catch.hpp"
-
-#include "ClientSocket.h"
-#include "Timer.h"
-#include "logger.h"
-#include "slsDetector.h"
-#include "sls_detector_defs.h"
-#include "sls_detector_exceptions.h"
-#include "sls_detector_funcs.h"
-#include <iostream>
-#include <vector>
-
-#define VERBOSE
-
-using sls::RuntimeError;
-using sls::SharedMemoryError;
-using sls::SocketError;
-using sls::DetectorError;
-
-int main() {
-
-
-    const std::string hostname = "beb083";
-    auto type = slsDetector::getTypeFromDetector(hostname);
-    slsDetector d(type);
-    d.setHostname(hostname);
-    d.setOnline(true);
-    std::cout << "hostname: " << d.getHostname() << '\n';
-    d.setThresholdTemperature(50);
-    // try{
-    //     d.setThresholdTemperature(50);
-    // }catch(const DetectorError &e){
-    //     std::cout << "Caught: " << e.what() << '\n';
-    // }
-    // std::cout << "hostname: " << d.getHostname() << '\n';
-    // std::cout << "exptime: " << d.setDAC(-1, slsDetectorDefs::E_Vrf, 0) << '\n';
-
-
-
-
-    // slsDetector d2(type);
-    // std::cout << "Online: " << d2.getOnlineFlag() << '\n';
-    // d2.setHostname("beb55555");
-    // d2.setOnline(true);
-    // std::cout << "Online: " << d2.getOnlineFlag() << '\n';
-    // std::cout << "hostname: " << d2.getHostname() << '\n';
-
-    // std::cout << "port: " << d.getControlPort() << '\n';
-    // d.setOnline(true);
-    // d.setReceiverOnline(true);
-    // std::cout << "reciver version: " << std::hex << d.getReceiverVersion() << '\n';
-    // // std::cout << "version: " << d.getId(slsDetectorDefs::CLIENT_RECEIVER_API_VERSION) << '\n';
-    // d.freeSharedMemory();
-    // //Catch exception
-    // try {
-    //     throw RuntimeError("something went wrong");
-    // } catch (RuntimeError &e) {
-    //     std::cout << "Caught RuntimeError with message : " << e.what() << '\n';
-    // }
-
-    // //Catch base class
-    // try {
-    //     throw SharedMemoryError("Could not create shared memory");
-    // } catch (RuntimeError &e) {
-    //     std::cout << "Caught: " << e.what() << '\n';
-    // }
-
-    // //Catch base class after looking for something else
-    // try {
-    //     throw SharedMemoryError("Could not create shared memory");
-    // } catch (SocketError &e) {
-
-    //     std::cout << "Caught Socket error: " << e.what() << '\n';
-
-    // } catch (RuntimeError &e) {
-    //     std::cout << "Caught base class: " << e.what() << '\n';
-    // }
-
-    // //Catch any after looking for something else
-    // try {
-    //     throw SharedMemoryError("Could not create shared memory");
-    // } catch (SocketError &e) {
-
-    //     std::cout << "Caught Socket error: " << e.what() << '\n';
-
-    // } catch (...) {
-    //     std::cout << "Caught Something else probably should have let me crash\n";
-    // }
-
-
-    // throw RuntimeError("This one we missed");
-    return 0;
-}

integrationTests/src/test-multiDetector.cpp

@@ -1,11 +0,0 @@
-// #include "catch.hpp"
-// #include "multiSlsDetector.h"
-
-// #include <iostream>
-// TEST_CASE("Initialize a detector") {
-// multiSlsDetector det(0, true, true);
-//   std::cout << "Size: " << det.getNumberOfDetectors() << std::endl;
-//   std::cout << "Hostname: " << det.getHostname() << std::endl;
-//   REQUIRE(false);
-  
-// }

integrationTests/src/test-slsDetector.cpp

@@ -1,199 +0,0 @@
-
-#include "catch.hpp"
-
-#include "ClientSocket.h"
-#include "logger.h"
-#include "slsDetector.h"
-#include "sls_detector_defs.h"
-
-#include "Timer.h"
-#include "sls_detector_funcs.h"
-#include <iostream>
-#include <vector>
-#define VERBOSE
-
-auto type_enum = slsDetectorDefs::detectorType::EIGER;
-const std::string hostname = "beb083";
-const std::string type_string = "Eiger";
-const std::string my_ip = "129.129.205.242";
-
-TEST_CASE("single EIGER detector no receiver basic set and get") {
-    //TODO! this test should take command line arguments for config
-
-    //Read type by connecting to the detector
-    auto type = slsDetector::getTypeFromDetector(hostname);
-    CHECK(type == type_enum);
-
-    //Create slsDetector of said type and set hostname and detector online
-    slsDetector d(type);
-    CHECK(d.getDetectorTypeAsEnum() == type);
-    CHECK(d.getDetectorTypeAsString() == type_string);
-
-    d.setHostname(hostname);
-    CHECK(d.getHostname() == hostname);
-
-    d.setOnline(true);
-    CHECK(d.getOnlineFlag() == true);
-
-    CHECK(d.getReceiverOnline() == false);
-    CHECK(d.checkDetectorVersionCompatibility() == slsDetectorDefs::OK);
-
-    //Setting and reading exposure time
-    auto t = 1000000000;
-    d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME, t);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME) == t);
-
-    //size of an eiger half module with and without gap pixels
-    CHECK(d.getTotalNumberOfChannels() == 256 * 256 * 4);
-    CHECK(d.getTotalNumberOfChannels(slsDetectorDefs::dimension::X) == 1024);
-    CHECK(d.getTotalNumberOfChannels(slsDetectorDefs::dimension::Y) == 256);
-    // CHECK(d.getTotalNumberOfChannels(slsDetectorDefs::dimension::Z) == 1);
-    CHECK(d.getTotalNumberOfChannelsInclGapPixels(slsDetectorDefs::dimension::X) == 1024);
-    CHECK(d.getTotalNumberOfChannelsInclGapPixels(slsDetectorDefs::dimension::Y) == 256);
-    // CHECK(d.getTotalNumberOfChannelsInclGapPixels(slsDetectorDefs::dimension::Z) == 1);
-
-    CHECK(d.getNChans() == 256 * 256);
-    CHECK(d.getNChans(slsDetectorDefs::dimension::X) == 256);
-    CHECK(d.getNChans(slsDetectorDefs::dimension::Y) == 256);
-    // CHECK(d.getNChans(slsDetectorDefs::dimension::Z) == 1);
-
-    CHECK(d.getNChips() == 4);
-    CHECK(d.getNChips(slsDetectorDefs::dimension::X) == 4);
-    CHECK(d.getNChips(slsDetectorDefs::dimension::Y) == 1);
-    // CHECK(d.getNChips(slsDetectorDefs::dimension::Z) == 1);
-
-    d.freeSharedMemory();
-}
-
-TEST_CASE("Set control port then create a new object with this control port") {
-    /*
-    TODO!
-    Standard port but should not be hardcoded 
-    Is this the best way to initialize the detectors
-    Using braces to make the object go out of scope
-    */
-    int old_cport = DEFAULT_PORTNO;
-    int old_sport = DEFAULT_PORTNO + 1;
-    int new_cport = 1993;
-    int new_sport = 2000;
-
-    {
-        auto type = slsDetector::getTypeFromDetector(hostname);
-        CHECK(type == type_enum);
-        slsDetector d(type);
-        d.setHostname(hostname);
-        d.setOnline(true);
-        CHECK(d.getControlPort() == old_cport);
-        d.setControlPort(new_cport);
-        CHECK(d.getStopPort() == old_sport);
-        d.setStopPort(new_sport);
-        d.freeSharedMemory();
-    }
-    {
-        auto type = slsDetector::getTypeFromDetector(hostname, new_cport);
-        CHECK(type == type_enum);
-        slsDetector d(type);
-        d.setHostname(hostname);
-        d.setControlPort(new_cport);
-        d.setStopPort(new_sport);
-        CHECK(d.getControlPort() == new_cport);
-        CHECK(d.getStopPort() == new_sport);
-
-        d.setOnline(true);
-
-        //Reset standard ports
-        d.setControlPort(old_cport);
-        d.setStopPort(old_sport);
-        d.freeSharedMemory();
-    }
-
-    auto type = slsDetector::getTypeFromDetector(hostname);
-    CHECK(type == type_enum);
-    slsDetector d(type);
-    d.setHostname(hostname);
-    d.setOnline(true);
-    CHECK(d.getStopPort() == DEFAULT_PORTNO + 1);
-}
-
-TEST_CASE("Locking mechanism and last ip") {
-    auto type = slsDetector::getTypeFromDetector(hostname);
-    slsDetector d(type);
-    d.setHostname(hostname);
-    d.setOnline(true);
-
-    //Check that detector server is unlocked then lock
-    CHECK(d.lockServer() == 0);
-    d.lockServer(1);
-    CHECK(d.lockServer() == 1);
-
-    //Can we do things while it is locked
-    auto t = 1300000000;
-    d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME, t);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME) == t);
-
-    //unlock again
-    d.lockServer(0);
-    CHECK(d.lockServer() == 0);
-
-    CHECK(d.getLastClientIP() == my_ip);
-}
-
-TEST_CASE("Excersise all possible set timer functions") {
-    // FRAME_NUMBER, /**< number of real time frames: total number of acquisitions is number or frames*number of cycles */
-    // ACQUISITION_TIME, /**< exposure time */
-    // FRAME_PERIOD, /**< period between exposures */
-    // DELAY_AFTER_TRIGGER, /**< delay between trigger and start of exposure or readout (in triggered mode) */
-    // GATES_NUMBER, /**< number of gates per frame (in gated mode) */
-    // CYCLES_NUMBER, /**< number of cycles: total number of acquisitions is number or frames*number of cycles */
-    // ACTUAL_TIME, /**< Actual time of the detector's internal timer */
-    // MEASUREMENT_TIME,  /**< Time of the measurement from the detector (fifo) */
-
-    // PROGRESS, /**< fraction of measurement elapsed - only get! */
-    // MEASUREMENTS_NUMBER,
-    // FRAMES_FROM_START,
-    // FRAMES_FROM_START_PG,
-    // SAMPLES,
-    // SUBFRAME_ACQUISITION_TIME, /**< subframe exposure time */
-    // STORAGE_CELL_NUMBER, /**<number of storage cells */
-    // SUBFRAME_DEADTIME, /**< subframe deadtime */
-    // MEASURED_PERIOD,	/**< measured period */
-    // MEASURED_SUBPERIOD,	/**< measured subperiod */
-    // MAX_TIMERS
-
-    auto type = slsDetector::getTypeFromDetector(hostname);
-    slsDetector d(type);
-    d.setHostname(hostname);
-    d.setOnline(true);
-
-    //Number of frames
-    auto frames = 10;
-    d.setTimer(slsDetectorDefs::timerIndex::FRAME_NUMBER, frames);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::FRAME_NUMBER) == frames);
-
-    auto t = 10000000;
-    d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME, t);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME) == t);
-
-    auto period = 1000000000;
-    d.setTimer(slsDetectorDefs::timerIndex::FRAME_PERIOD, period);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::FRAME_PERIOD) == period);
-
-    // not implemented for EIGER
-    // auto delay = 10000;
-    // d.setTimer(slsDetectorDefs::timerIndex::DELAY_AFTER_TRIGGER, delay);
-    // CHECK(d.setTimer(slsDetectorDefs::timerIndex::DELAY_AFTER_TRIGGER) == delay);
-
-    // auto gates = 1;
-    // d.setTimer(slsDetectorDefs::timerIndex::GATES_NUMBER, gates);
-    // CHECK(d.setTimer(slsDetectorDefs::timerIndex::GATES_NUMBER) == gates);
-
-    auto cycles = 2;
-    d.setTimer(slsDetectorDefs::timerIndex::CYCLES_NUMBER, cycles);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::CYCLES_NUMBER) == cycles);
-
-    auto subtime = 200;
-    d.setTimer(slsDetectorDefs::timerIndex::SUBFRAME_ACQUISITION_TIME, subtime);
-    CHECK(d.setTimer(slsDetectorDefs::timerIndex::SUBFRAME_ACQUISITION_TIME) == subtime);
-}
-
-// TEST_CASE()

integrationTests/src/test.cpp

@@ -1,3 +0,0 @@
-// tests-main.cpp
-#define CATCH_CONFIG_MAIN
-#include "catch.hpp"

manual/manual-api/CMakeLists.txt

@@ -3,8 +3,8 @@ set(SOURCES
 )
 
 include_directories(
-    ../../slsSupportLib/include
     ../../slsReceiverSoftware/include
+    ../../slsDetectorSoftware/slsDetectorAnalysis 
     ../../build/bin 
     ../../slsdetectorSoftware/slsDetector 
 )
@@ -16,12 +16,15 @@ add_executable(slsMultiReceiver
 target_link_libraries(slsMultiReceiver
     slsReceiverShared
     pthread
-    ${ZeroMQ_LIBRARIES}
+    zmq
     rt
+    ${HDF5_LIBRARIES}
 )
 
 if (HDF5_FOUND)
-    target_link_libraries(slsMultiReceiver ${HDF5_LIBRARIES})
+    target_link_libraries(slsMultiReceiver 
+    ${HDF5_LIBRARIES}
+    )
 endif ()
 
 

manual/manual-api/Makefile

@@ -1,9 +1,9 @@
 PKGDIR		=	../..
-LIBDIR		=   $(PKGDIR)/bin
-INCLUDES	=   -I . -I$(PKGDIR)/slsSupportLib/include -I$(LIBDIR) -I$(PKGDIR)/slsDetectorSoftware/slsDetector  -I$(PKGDIR)/slsReceiversoftware/include
+LIBDIR		=   $(PKGDIR)/build/bin
+INCLUDES	=   -I . -I$(PKGDIR)/slsReceiverSoftware/include -I$(PKGDIR)/slsDetectorSoftware/slsDetectorAnalysis -I$(LIBDIR) -I$(PKGDIR)/slsDetectorSoftware/slsDetector 
 SRC_DET		= 	mainClient.cpp 	
 SRC_REC		=   mainReceiver.cpp
-ZMQLIBDIR	= 	$(PKGDIR)/slsSupportLib/include
+ZMQLIBDIR	= 	$(PKGDIR)/slsReceiverSoftware/include
 LDFLAG_DET 	=	-I. -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread -lrt -L$(ZMQLIBDIR) -Wl,-rpath=$(ZMQLIBDIR) -lzmq
 LDFLAG_REC 	=	-I. -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread -lrt -L$(ZMQLIBDIR) -Wl,-rpath=$(ZMQLIBDIR) -lzmq
 DESTDIR		?=	../docs

manual/manual-api/mainReceiver.cpp

@@ -16,7 +16,7 @@ It is linked in manual/manual-api from slsReceiverSoftware/include ]
 
  */
 
-#include "sls_detector_defs.h"
+#include "sls_receiver_defs.h"
 #include "slsReceiverUsers.h"
 
 #include <iostream>
@@ -96,20 +96,20 @@ void AcquisitionFinished(uint64_t frames, void*p){
  * @param p pointer to object
  */
 void GetData(char* metadata, char* datapointer, uint32_t datasize, void* p){
-	slsDetectorDefs::sls_receiver_header* header = (slsDetectorDefs::sls_receiver_header*)metadata;
-	slsDetectorDefs::sls_detector_header detectorHeader = header->detHeader;
+	slsReceiverDefs::sls_receiver_header* header = (slsReceiverDefs::sls_receiver_header*)metadata;
+	slsReceiverDefs::sls_detector_header detectorHeader = header->detHeader;
 
 	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.row,
 			"#### %d GetData: ####\n"
-			"frameNumber: %lu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %lu"
-			"\t\ttimestamp: %lu\t\tmodId: %u\t\t"
+			"frameNumber: %llu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %llu"
+			"\t\ttimestamp: %llu\t\tmodId: %u\t\t"
 			"row: %u\t\tcolumn: %u\t\treserved: %u\t\tdebug: %u"
 			"\t\troundRNumber: %u\t\tdetType: %u\t\tversion: %u"
 			//"\t\tpacketsMask:%s"
 			"\t\tfirstbytedata: 0x%x\t\tdatsize: %u\n\n",
-			detectorHeader.row, (long unsigned int)detectorHeader.frameNumber,
-			detectorHeader.expLength, detectorHeader.packetNumber, (long unsigned int)detectorHeader.bunchId,
-			(long unsigned int)detectorHeader.timestamp, detectorHeader.modId,
+			detectorHeader.row, (long long unsigned int)detectorHeader.frameNumber,
+			detectorHeader.expLength, detectorHeader.packetNumber, (long long unsigned int)detectorHeader.bunchId,
+			(long long unsigned int)detectorHeader.timestamp, detectorHeader.modId,
 			detectorHeader.row, detectorHeader.column, detectorHeader.reserved,
 			detectorHeader.debug, detectorHeader.roundRNumber,
 			detectorHeader.detType, detectorHeader.version,
@@ -130,8 +130,8 @@ void GetData(char* metadata, char* datapointer, uint32_t datasize, void* p){
  * @param p pointer to object
  */
 void GetData(char* metadata, char* datapointer, uint32_t &revDatasize, void* p){
-	slsDetectorDefs::sls_receiver_header* header = (slsDetectorDefs::sls_receiver_header*)metadata;
-	slsDetectorDefs::sls_detector_header detectorHeader = header->detHeader;
+	slsReceiverDefs::sls_receiver_header* header = (slsReceiverDefs::sls_receiver_header*)metadata;
+	slsReceiverDefs::sls_detector_header detectorHeader = header->detHeader;
 
 	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.row,
 			"#### %d GetData: ####\n"
@@ -187,7 +187,7 @@ int main(int argc, char *argv[]) {
 	sa.sa_flags=0;							// no flags
 	sa.sa_handler=sigInterruptHandler;		// handler function
 	sigemptyset(&sa.sa_mask);				// dont block additional signals during invocation of handler
-	if (sigaction(SIGINT, &sa, nullptr) == -1) {
+	if (sigaction(SIGINT, &sa, NULL) == -1) {
 		cprintf(RED, "Could not set handler function for SIGINT\n");
 	}
 
@@ -197,7 +197,7 @@ int main(int argc, char *argv[]) {
 	asa.sa_flags=0;							// no flags
 	asa.sa_handler=SIG_IGN;					// handler function
 	sigemptyset(&asa.sa_mask);				// dont block additional signals during invocation of handler
-	if (sigaction(SIGPIPE, &asa, nullptr) == -1) {
+	if (sigaction(SIGPIPE, &asa, NULL) == -1) {
 		cprintf(RED, "Could not set handler function for SIGPIPE\n");
 	}
 
@@ -221,10 +221,10 @@ int main(int argc, char *argv[]) {
 			char temp[10];
 			sprintf(temp,"%d",startTCPPort + i);
 			char* args[] = {(char*)"ignored", (char*)"--rx_tcpport", temp};
-			int ret = slsDetectorDefs::OK;
+			int ret = slsReceiverDefs::OK;
 			/**	-  create slsReceiverUsers object with appropriate arguments */
 			slsReceiverUsers *receiver = new slsReceiverUsers(3, args, ret);
-			if(ret==slsDetectorDefs::FAIL){
+			if(ret==slsReceiverDefs::FAIL){
 				delete receiver;
 				exit(EXIT_FAILURE);
 			}
@@ -236,22 +236,22 @@ int main(int argc, char *argv[]) {
 
 				/** - Call back for start acquisition */
 				cprintf(BLUE, "Registering 	StartAcq()\n");
-				receiver->registerCallBackStartAcquisition(StartAcq, nullptr);
+				receiver->registerCallBackStartAcquisition(StartAcq, NULL);
 
 				/** - Call back for acquisition finished */
 				cprintf(BLUE, "Registering 	AcquisitionFinished()\n");
-				receiver->registerCallBackAcquisitionFinished(AcquisitionFinished, nullptr);
+				receiver->registerCallBackAcquisitionFinished(AcquisitionFinished, NULL);
 
 				/* 	- Call back for raw data */
 				cprintf(BLUE, "Registering     GetData() \n");
-				if (withCallback == 1) receiver->registerCallBackRawDataReady(GetData,nullptr);
-				else if (withCallback == 2) receiver->registerCallBackRawDataModifyReady(GetData,nullptr);
+				if (withCallback == 1) receiver->registerCallBackRawDataReady(GetData,NULL);
+				else if (withCallback == 2) receiver->registerCallBackRawDataModifyReady(GetData,NULL);
 			}
 
 
 
 			/**	- start tcp server thread */
-			if (receiver->start() == slsDetectorDefs::FAIL){
+			if (receiver->start() == slsReceiverDefs::FAIL){
 				delete receiver;
 				cprintf(BLUE,"Exiting Child Process [ Tid: %ld ]\n", (long)syscall(SYS_gettid));
 				exit(EXIT_FAILURE);
@@ -272,7 +272,7 @@ int main(int argc, char *argv[]) {
 	sa.sa_flags=0;							// no flags
 	sa.sa_handler=SIG_IGN;					// handler function
 	sigemptyset(&sa.sa_mask);				// dont block additional signals during invocation of handler
-	if (sigaction(SIGINT, &sa, nullptr) == -1) {
+	if (sigaction(SIGINT, &sa, NULL) == -1) {
 		cprintf(RED, "Could not set handler function for SIGINT\n");
 	}
 
@@ -283,7 +283,7 @@ int main(int argc, char *argv[]) {
 
 	/** - Parent process waits for all child processes to exit */
 	for(;;) {
-		pid_t childPid = waitpid (-1, nullptr, 0);
+		pid_t childPid = waitpid (-1, NULL, 0);
 
 		// no child closed
 		if (childPid == -1) {

manual/manual-client/Eiger_short.tex

@@ -24,7 +24,7 @@ Figure ~\ref{boards} show the readout board basic components on an Eiger half mo
 \begin{center}
 \includegraphics[width=1\textwidth]{Boards}
 \end{center}
-\caption{Picture with most relevant components of the EIGER readout system. The readout system starts with the Front End Boards (FEB) which performs data descrambling (also converts the packets from 12 $\to$ 16 bits) and rate correction. The BackEndBoard (BEB) has 2x2GB DDR2 memories and can perform data buffering (storing images on board) and data summation (16 bit $\to$ 32 bits). The controls to the detector are passed through the 1Gb, while in most installations, the data are sent out through the 10~GB ethernet connection.} 
+\caption{Picture with most relevant components of the EIGER readout system. The readout system starts with the Front End Boards (FEB) which performs data descrambling (also converts the packets from 12 $\to$ 16 bits) and rate correction. The BackEndBoard (BEB) has 2x2GB DDR2 memories and can perform data buffering (storing images on board) and data summation (16 bit $\to$ 32 bits). The controls to the detector are passed through the 1Gb, while in most installations, the data are sent out through the 10GB ethernet connection.} 
 \label{boards}
 \end{figure}
 
@@ -156,14 +156,6 @@ outdir /sls/X12SA/data/x12saop/Data10/Eiger0.5M
 threaded 1
 \end{verbatim}
 
-The geometry on af an EIGER module, showing the quadrants corresponding to the udp ports and the 2 receivers is shown in figure~\ref{fig:eigerports}.
-\begin{figure}[t]
-\begin{center}
-\includegraphics[width=0.9\textwidth]{Eiger-Chips}
-\end{center}
-\caption{Geometry of UDP ports and receivers in a singel module.}
-\label{fig:eigerports}
-\end{figure}
 
 In the case you are developing your own receiver, then you need to remove the 1Gb receiver hostname {\tt{rx\_hostname}} and substitute it with the mac address of the device:
 \begin{verbatim}
@@ -171,6 +163,7 @@ configuremac 0
 rx_udpmac xx:xx:...
 \end{verbatim}
 
+
 One can configure all the detector settings in a parameter file {\tt{setup.det}}, which is loaded by doing:
 \begin{verbatim}
 sls_detector_put 0-parameters setup.det
@@ -226,7 +219,6 @@ We have added a special command, {\tt{thresholdnotb}}, which allows to scan the
 \begin{verbatim}
 sls_detector_put 0-thresholdnotb energy_in_eV
 \end{verbatim}
-See section~\ref{sec:fastthresholdscan}.
 
 \section{Standard acquisition}
 
@@ -584,7 +576,7 @@ sls_detector_put 0-frames x
 sls_detector_put 0-cycles y
 sls_detector_status trigger
 \end{verbatim}
- Note that this functionality is very (!) useful if you need to do something between and acquisition and the next. This can be used to do a fast threshold scan for example. See section~\ref{sec:fastthresholdscan}.
+ Note that this functionality is very (!) useful if you need to do something between and acquisition and the next. This can be used to do a fast threshold scan for example. See section~\ref{Sec:fastthresholdscan}.
 
 
 \section{Autosumming and rate corrections} \label{advanced}
@@ -719,7 +711,7 @@ To activate back a module, do:
 \end{verbatim}
 
 \end{itemize}
-\section{Setting up the PC settings for 10Gb}\label{10g}
+\subsection{Setting up 10Gb correctly: experience so far}\label{10g}
 
 For configuring well the 10Gb card not to loose packets, 
 \begin{itemize}
@@ -741,54 +733,13 @@ Very important is to activate the flow control in 10Gb (in 1Gb it is on by defau
 \begin{verbatim}
 ./sls_detector_put flowcontrol_10g 1
 \end{verbatim}
-You ned to check that flow control is setup on the reeceiving interfaces. Check with:
-\begin{verbatim}
-ethtool -a eth1
-\end{verbatim}
-.RX should be ON. Set the transmission delays as explained in the manual if necessary. These transmission delays should help matching teh writing speed performance of your disk. You can check how fast you are writing using the {\tt{dstat}} command.  
-
-Now setup the computer server propery:
-Check the size of: 
-\begin{verbatim}
-sysctl -a | grep backlog
-sysctl -a | grep rmem
-\end{verbatim}
-Set it correctly with: 
-\begin{verbatim}
-sysctl net.core.netdev_max_backlog=250000
-sysctl net.core.rmem_default=$((100*1024*1024))
-\end{verbatim}
-
-Last, you can disable power saving in teh CPU frequency:
-\begin{verbatim}
-cpupower frequency-info
-cpupower frequency-set -g performance 
-\end{verbatim}
+Set the transmission delays as explained in the manual.
 
 It can help to increase the fifo size of the receiver to {\tt{rx\_fifodepth}} to 1000 images
 \begin{verbatim}
 ./sls_detector_put rx_fifodepth 1000
 \end{verbatim}
-One needs to keep into account that in 16 bit mode for 1 image we expect each slsReceiver  to allocate 0.5MB. So for 1000 images, we expect  500MB memory for each receiver. This can be monitored in Linux with "top" or "free -m". To receive the max number of images possible on the detector, a minimum of 8~GB of memories are required.
-
-Last, it is very important that not too many files are created. There is high possibility to loose packets in the time to close and open files for the writer. IN 3.1.x, the default number of images written per file, in Eiger is 2000. This is defined by the line:
-\begin{verbatim}
-#define EIGER_MAX_FRAMES_PER_FILE	2000
-\end{verbatim}
-in {\tt{slsDetectorsPackage/slsReceiverSoftware/include/sls\_receiver\_defs.h}}. In 4.0.x, this is interactively defined using the command: {\tt{r\_framesperfile}}. By default it is 10000.  
-
-If you do not have a large disk, you can write to memory if your pc is not fast enough:
-\begin{verbatim}
-mount -t tmpfs none /ramdisk_folder
-\end{verbatim}
-or 
-\begin{verbatim}
-mount -t tmpfs none /mnt/ramdisk -o size=10G
-\end{verbatim}
-check how many GB memory you can allocate, to avoid swapping otherwise
-
-
-
+One needs to keep into account that in 16 bit mode for 1 image we expect each slsReceiver  to allocate 0.5MB. So for 1000 images, we expect  500MB memory for each receiver. This can be monitored in Linux with "top" or "free -m".
 
 \section{Offline processing and monitoring}
 
@@ -868,11 +819,6 @@ Checkout the {\tt{developer}} branch if in a 3.1.X release or the {\tt{v4.0.0}}
 
 Three possible conversions are possible: into \textbf{cbf}, \textbf{hdf5} and \textbf{root} format. The detector writes 4 raw files per receiver. An offline image reconstruction executable has been written to collate the possible files together and produce output files. By default an interpolation between the values of the large pixels is performed. Gap pixels between modules are also inserted.
 
-Note that the number of images per file is hardcoded and needs to match whatever you are using in {\tt{slsDetectorsPackage/slsReceiverSoftware/include/sls\_receiver\_defs.h}}:
-\begin{verbatim}
-#define EIGER_MAX_FRAMES_PER_FILE	2000
-\end{verbatim}
-The default is 2000.
 
 \subsubsection{cbf}
 The cbf executable executable uses the CBFlib-0.9.5 library (downloaded from the web as it download some architecture dependent packages at installation).Edit the Makefile to correclty point at it.\\
@@ -886,7 +832,7 @@ eg.
 {\tt{cbfMaker /scratch/run\_63\_d1\_f000000000000\_3.raw}}\\
 
 To use it any geometry:\\
-{\tt{cbfMaker [filename] [outdir, def=same as filename] [pixels x, def=1024] [pixels y, def=512] [singlemodulelongside\_x, def=1] [fillgaps, def=Interpolate Big Pixels] [hdf5datasetname, def="Eiger"] [start det,def=0]}}\\
+{\tt{cbfMaker [filename] [pixels x, def=1024] [pixels y, def=512] [singlemodulelongside\_x, def=1] [fillgaps, def=Interpolate Big Pixels] [hdf5datasetname, def="Eiger"] [start det,def=0]}}\\
 eg.
 {\tt cbfMaker /scratch/run\_63\_d0\_f000000000000\_3.raw  3072 512 1 2 ``Eiger'' 0}.\\
 
@@ -942,7 +888,7 @@ are not commented out. All other options need to be commented out. Copile the co
 make hdf5Maker; make hdf5MakerOMNY;
 \end{verbatim}
 
-If you are at cSAXS. all images collected will be written in a single file. If you are not at CSAXS, most likely you want to have all the images written in a single raw file into an HDF5 file. The multiple HDF5 files are then linked in a master file, with many subdatasets (can be read by albula) or by a virtual file with a single dataset. If you want a master o virtual file, uncomment this option:
+If you are at cSAXS. all images collected will be written in a single file. If you are not at CSAXS, most likely you want to have all the images written in a single raw file into an HDF5 file. The multiple HDF5 files are then linked in a master file, with many subdatasets (can be read by albula) or by a virtual file with a single dataset. If you want a mster o virtual file, uncomment this option:
 \begin{verbatim}
 #define MASTERVIRTUAL
 \end{verbatim}
@@ -964,7 +910,7 @@ The data will be written as TH2D in root format. Edit the {\tt{Makefile}} to poi
 \begin{verbatim}
 make image 
 \end{verbatim}
-There is no program other executable that already keeps into account the geometry for it.
+There is no program other executable that alredy keeps into account the geometry for it.
 To use it any geometry:\\
 {\tt{image [filename] [pixels x, def=1024] [pixels y, def=512] [singlemodulelongside\_x, def=1] [fillgaps, def=Interpolate Big Pixels] [hdf5datasetname, def="Eiger"] [start det,def=0]}}\\
 eg.
@@ -1032,9 +978,9 @@ ssh root@$i sync; done
 
 \section{Loading firmware bitfiles}
 
-\textbf{As a new procedure, the first thing to do is to kill the server on the boards, copy the new one there without starting it.} Note that failure to do this step before may cause the linux on the boards to crash and not being able to ping it (this if the registers between the old and new firmware change).
+\textbf{As a new procedure, the first thing to do is to kill the server on the boards, copy the new one there without starting it.} Note taht failure to do this step before may cause the linux on the baords to crash and not being able to ping it (this if the registers between the old and new firmware change).
 
-This is the procedure from a terminal;
+This is teh procedure from a terminal;
 \begin{verbatim}
 for i in beb111 beb070; 
 do ssh root@$i killall eigerDetectorServer; 
@@ -1112,40 +1058,12 @@ To load the special noise file look at {\tt{settingsdir/eiger/standard/eigernois
 \begin{verbatim}
 sls_detector_put trimbits ../settingsdir/eiger/standard/eigernoise
 \end{verbatim}
-To exit from this pattern noise, just set the threshold to something known. 
+To exit from this pattern noise, just set the theshold to something known. 
 \begin{verbatim}
 \item sls_detector_put threshold 50000 standard
 \end{verbatim}
 where 5000 would be a value in eV and {/tt{standard}} is important in this case.
 
-\section{(Fast) threshold scans during beam operation}\label{sec:fastthresholdscan}
-Occasionally you might need to do threshold scans during your data taking (for example for Laue experiments or to get any spectral information). Setting the threshold in this case would be not optimal as you would change trimbits at every energy and this could give you a ``step'' behaviour. What you could do is to use the 
-\begin{verbatim}
-\item sls_detector_put thresholdnotb 50000 
-\end{verbatim}
- which set the threshold to an energy but does not change trimbits. We suggest that before using this function you load the {\tt{threshold}} at an energy in the middle of your scan range and then change {\tt{thresholdnotb}}.
-We have also been requested if we could speed up the threshold scan. At the moment no specific function has been integrated in firmware, but one could use the software trigger option to perform what you need:
-\begin{verbatim}
-./sls_detector_put exptime 0.01
-./sls_detector_put timing trigger
-./sls_detector_put enablefwrite 0
-./sls_detector_put resetframescaught 0 
-./sls_detector_put index 0
-./sls_detector_put cycles 21
-./sls_detector_put receiver start
-./sls_detector_put status start 
-for i in $(seq 0 20); 
- do
-   #./sls_detector_put thresholdnotb 5000 ##this is still too slow as it loads the module 
- ./sls_detector_put 0:vrf 3199 #need to know the appropriate vrf at every energy 
- ./sls_detector_put 1:vrf 3199 #need to know the appropriate vrf at every energy 
- ./sls_detector_put status trigger
-    #sleep 0.005
-done
-./sls_detector_put  receiver stop
-./sls_detector_put  resetframescaught 0 
-./sls_detector_put  timing auto
-\end{verbatim} 
 
 \section{Troubleshooting}
 \subsection{Cannot successfully finish an acquisition}
@@ -1297,7 +1215,7 @@ Scroll up in the terminal till you find:\\
 *************** MASTER/SLAVE ***************\\
 *************** NORMAL/SPECIAL ***************\\
 
-There is also an easier way, that is that only the master module will return the real value of the HV. If you have more than 1 detector system, then you will have more than 1 physical master, as the HV needs to be applied to all the systems.
+There is also an easier way, that is that only the master module will reaturn the real value of the HV. If you have more than 1 detector system, then you will have more than 1 physical master, as the HV needs to be applied to all the systems.
 
 \begin{verbatim}
 for i in $(seq 0 36); do sls_detector_put $i:vhighvoltage; done
@@ -1321,10 +1239,10 @@ If you see the client returning the following error message:\\
 \end{verbatim}
 
 \subsection{There is noise running the detector in 32-bit}
-If you are running the detector in 32-bit (autosumming), there might be some noise, particularly at lower threshold energies. This is due to the fact that the analog part of the chips require some latency time to settle which is larger than the readout time. It is possible to run the detector only in {\tt{parallel}} or {\tt{nonparallel}} mode, respectively with readout times between frames of 12~$\mu$s and 504~$\mu$s. If you switch {\tt{flags}} to non {\tt{nonparallel}} mode you will give enough time for the signals to settle. From release 4.0.0, there is a configurable delay that can be set through the {\tt{subdeadtime}} variable, such that you can remain with the {\tt{parallel}} flag, but can obtain a configurable dead time between frames. Ask the SLS detector group for an appropriate dead time for your detector, but typically a dead time of 20-50~$\mu$s should be enough. Note that this {\tt{subdeadtime}} need to include the 12~$\mu$s minimum readout time, so it has to be larger than 12~$\mu$s to do anything.  
+If you are running the detector in 32-bit (autosumming), there might be some noise, particularly at lower thereshold energies. This is due to the fact that the analog part of the chips require some latency time to settle which is larger than the readout time. It is possible to run the detector only in {\tt{parallel}} or {\tt{nonparallel}} mode, respectively with readout times between frames of 12~$\mu$s and 504~$\mu$s. If you switch {\tt{flags}} to non {\tt{nonparallel}} mode you will give enough time for the signals to settle. From release 4.0.0, there is a configurable delay that can be set through the {\tt{subdeadtime}} variable, such that you can remain with the {\tt{parallel}} flag, but can obtain a configurable dead time between frames. Ask the SLS detector group for an appropriate dead time for your detector, but typically a dead time of 20-50~$\mu$s should be enough. Note that this {\tt{subdeadtime}} need to include the 12~$\mu$s minimum readout time, so it has to be larger than 12~$\mu$s to do anything.  
  
 \subsection{There is noise running the detector at high frame rate(4,8,16 bit)}
-If are running in {\tt{parallel}} mode, in particular at low threshold energies, you might encounter some noise. The reason is that the analog part of the chips require some latency time to settle which is larger than the readout time. 
+If are running in {\tt{parallel}} mode, in particular at low thereshold energies, you might encounter some noise. The reason is that the analog part of the chips require some latency time to settle which is larger than the readout time. 
 \begin{enumerate}
 \item You can lower the frame rate and relax requirements on period: 
 At low frame rate, you normally leave enough time between the end of the acquisition and the starting of the next, so you should not see this effect. In any case setting a {\tt{period}}={\tt{exptime}}+readout time from Table~\ref{tchipro} +extra 20$\mu$s cures the problem. The 20$\mu$s could also be 10~$\mu$s, they are very hardware dependent.

manual/manual-main/slsDetectorInstall.tex

@@ -369,7 +369,7 @@ source directory.
  $ cd ..
  $ mkdir slsDetectorPackage-build
  $ cd slsDetectorPackage-build
- $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=OFF 
+ $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=OFF 
  $ make
 \end{verbatim}
 
@@ -377,7 +377,7 @@ Use the following as an example to compile statically and using specific hdf5
 folder 
 \begin{verbatim}
  $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage
--DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=ON
+-DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=ON
 \end{verbatim}
 
 After compiling, the libraries and executables will be found at `bin` directory 

python/CMakeLists.txt

@@ -1,39 +0,0 @@
-add_subdirectory(pybind11)
-pybind11_add_module(_sls_detector src/main.cpp)
-
-target_link_libraries(_sls_detector PUBLIC 
-                        slsDetectorShared
-                        slsReceiverShared
-                        slsSupportLib )  
-
-set_target_properties(_sls_detector PROPERTIES
-                        LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-                    )
-
-#Copy Python code 
-set( PYTHON_FILES
-    __init__.py
-    adcs.py
-    dacs.py
-    decorators.py
-    detector_property.py
-    detector.py
-    eiger.py
-    errors.py
-    experimental.py
-    jungfrau_ctb.py
-    jungfrau.py
-    registers.py
-    utils.py
-
-)
-
-foreach(FILE ${PYTHON_FILES})
-    configure_file( sls_detector/${FILE}  
-    ${CMAKE_BINARY_DIR}/bin/sls_detector/${FILE}  )
-
-endforeach(FILE ${PYTHON_FILES})
-
-
-configure_file( scripts/basic.py  
-    ${CMAKE_BINARY_DIR}/basic.py  )

python/LICENSE

@@ -1,674 +0,0 @@
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-<http://www.gnu.org/philosophy/why-not-lgpl.html>.

python/README.md

@@ -1,63 +0,0 @@
-# sls_detector: Python interface to slsDetectorPackage
-Python interface to the Sls Detector Software. 
-
-### Documentation ###
-Sphinx built documentation is available here:
-[https://slsdetectorgroup.github.io/sls_detector/](https://slsdetectorgroup.github.io/sls_detector/)
-
-
-### Install using conda ###
-
-Binaries are available using conda. This installs both the detector software and the Python
-interface.
-
-```bash
-#Add conda channels
-conda config --add channels conda-forge
-conda config --add channels slsdetectorgroup
-
-#Install latest version
-conda install sls_detector
-
-#Install specific version
-conda install sls_detector=3.0.1
-
-#Scientific Linux 6 version (GLIBC2.12)
-conda install sls_detector=SL6_3.0.1
-```
-
-### Building using conda-build ###
-
-Needs [sls_detector_software](https://github.com/slsdetectorgroup/sls_detector_software) installed.
-
-```bash
-#Clone source code
-git clone https://github.com/slsdetectorgroup/sls_detector.git
-
-#Checkout the branch needed
-git checkout 3.0.1
-
-#Build and install the local version
-conda-build sls_detector
-conda install --use-local sls_detector
-
-
-```
-### Developer build ###
-
-IF you if you are developing and are making constant changes to the code it's a bit cumbersome 
-to build with conda and install. Then an easier way is to build the C/C++ parts in the package 
-directory and temporary add this to the path
-
-```bash
-#in path/to/sls_detector  
-python setup.py build_ext --inplace
-```
-Then in your Python script
-```python
-
-import sys
-sys.path.append('/path/to/sls_detector')
-from sls_detector import Detector
-```
-

python/conda-recepie/build.sh

@@ -1,2 +0,0 @@
-#!/usr/bin/env bash
-${PYTHON} setup.py install     # Python command to install the script

python/conda-recepie/meta.yaml

@@ -1,43 +0,0 @@
-package:
-    name: sls_detector
-    version: refactor
-
-build:
-  number: 0
-
-source:
-    path: ..
-
-requirements:
-    build:
-        - {{ compiler('c') }}
-        - {{ compiler('cxx') }}
-        - cmake
-        - python {{ python }}
-        - libpng >=1.6.32,<1.6.35
-        - setuptools
-        - sls_detector_lib refactor
-        - pyzmq
-        - pybind11 2.2
-
-    host:
-        - python
-        - pybind11 2.2 
-
-    run:
-        - python
-        - numpy
-        - sls_detector_lib refactor
-        - pyzmq
-        - libstdcxx-ng
-        - libgcc-ng
-
-
-test:
-      imports:
-        - sls_detector
-
-
-
-about:
-    summary: "Interacting with detectors"

python/scripts/basic.py

@@ -1,5 +0,0 @@
-from sls_detector import Eiger
-from sls_detector import ExperimentalDetector
-
-d = Eiger()
-e = ExperimentalDetector()

python/setup.py

@@ -1,125 +0,0 @@
-"""
-Setup file for sls_detector
-Build upon the pybind11 example found here: https://github.com/pybind/python_example
-"""
-from setuptools import setup, Extension, find_packages
-from setuptools.command.build_ext import build_ext
-import sys
-import setuptools
-import os
-
-__version__ = 'refactor'
-
-
-def get_conda_path():
-    """
-    Keep this a function if we need some fancier logic later
-    """
-    print('Prefix: ', os.environ['CONDA_PREFIX'])
-    return os.environ['CONDA_PREFIX']
-
-
-class get_pybind_include(object):
-    """Helper class to determine the pybind11 include path
-    The purpose of this class is to postpone importing pybind11
-    until it is actually installed, so that the ``get_include()``
-    method can be invoked. """
-
-    def __init__(self, user=False):
-        self.user = user
-
-    def __str__(self):
-        import pybind11
-        return pybind11.get_include(self.user)
-
-
-ext_modules = [
-    Extension(
-        '_sls_detector',
-        ['src/main.cpp'],
-        include_dirs=[
-            # Path to pybind11 headers
-            get_pybind_include(),
-            get_pybind_include(user=True),
-            os.path.join(get_conda_path(), 'include/slsDetectorPackage'),
-
-        ],
-        libraries=['SlsDetector', 'SlsReceiver', 'zmq'],
-        library_dirs=[
-            os.path.join(get_conda_path(), 'lib'),
-            os.path.join(get_conda_path(), 'bin'),
-        ],
-
-        language='c++'
-    ),
-]
-
-
-# As of Python 3.6, CCompiler has a `has_flag` method.
-# cf http://bugs.python.org/issue26689
-def has_flag(compiler, flagname):
-    """Return a boolean indicating whether a flag name is supported on
-    the specified compiler.
-    """
-    import tempfile
-    with tempfile.NamedTemporaryFile('w', suffix='.cpp') as f:
-        f.write('int main (int argc, char **argv) { return 0; }')
-        try:
-            compiler.compile([f.name], extra_postargs=[flagname])
-        except setuptools.distutils.errors.CompileError:
-            return False
-    return True
-
-
-def cpp_flag(compiler):
-    """Return the -std=c++[11/14] compiler flag.
-    The c++14 is prefered over c++11 (when it is available).
-    """
-    if has_flag(compiler, '-std=c++14'):
-        return '-std=c++14'
-    elif has_flag(compiler, '-std=c++11'):
-        return '-std=c++11'
-    else:
-        raise RuntimeError('Unsupported compiler -- at least C++11 support '
-                           'is needed!')
-
-
-class BuildExt(build_ext):
-    """A custom build extension for adding compiler-specific options."""
-    c_opts = {
-        'msvc': ['/EHsc'],
-        'unix': [],
-    }
-
-    if sys.platform == 'darwin':
-        c_opts['unix'] += ['-stdlib=libc++', '-mmacosx-version-min=10.7']
-
-    def build_extensions(self):
-        ct = self.compiler.compiler_type
-        opts = self.c_opts.get(ct, [])
-        if ct == 'unix':
-            opts.append('-DVERSION_INFO="%s"' % self.distribution.get_version())
-            opts.append(cpp_flag(self.compiler))
-            if has_flag(self.compiler, '-fvisibility=hidden'):
-                opts.append('-fvisibility=hidden')
-        elif ct == 'msvc':
-            opts.append('/DVERSION_INFO=\\"%s\\"' % self.distribution.get_version())
-        for ext in self.extensions:
-            ext.extra_compile_args = opts
-        build_ext.build_extensions(self)
-
-
-setup(
-    name='sls_detector',
-    version=__version__,
-    author='Erik Frojdh',
-    author_email='erik.frojdh@psi.ch',
-    url='https://github.com/slsdetectorgroup/sls_detector',
-    description='Detector API for SLS Detector Group detectors',
-    long_description='',
-    packages=find_packages(exclude=['contrib', 'docs', 'tests']),
-    ext_modules=ext_modules,
-    install_requires=['pybind11>=2.2'],
-    cmdclass={'build_ext': BuildExt},
-    zip_safe=False,
-)

python/simple-integration-tests/eiger/config_test.py

@@ -1,17 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Created on Tue Nov 14 16:49:07 2017
-
-@author: l_frojdh
-"""
-
-fw_version = 23
-detector_type = 'Eiger'
-known_hostnames = ['beb083', 'beb098']
-image_size = (512,1024) #rows, cols
-module_geometry = (1,2) #horizontal, vertical
-
-#Remember to change these in the settings file as well!
-settings_path = '/home/l_frojdh/slsDetectorPackage/settingsdir/eiger'
-file_path = '/home/l_frojdh/out'

python/simple-integration-tests/eiger/fixtures.py

@@ -1,27 +0,0 @@
-import pytest
-
-from sls_detector import Detector
-
-@pytest.fixture
-def detector():
-    from sls_detector import Detector
-    return Detector()
-
-@pytest.fixture
-def eiger():
-    from sls_detector import Eiger
-    d = Eiger()
-    d.n_frames = 1
-    d.exposure_time = 1
-    d.file_write = False
-    return d
-
-
-@pytest.fixture
-def jungfrau():
-    from sls_detector import Jungfrau
-    return Jungfrau()
-
-detector_type = Detector().detector_type
-eigertest = pytest.mark.skipif(detector_type != 'Eiger', reason = 'Only valid for Eiger')
-jungfrautest = pytest.mark.skipif(detector_type != 'Jungfrau', reason = 'Only valid for Jungfrau')

python/simple-integration-tests/eiger/test.config

@@ -1,33 +0,0 @@
-detsizechan 1024 512
-
-#hostname for top+bottom+
-hostname beb083+beb098+
-
-#top
-0:rx_tcpport 1954
-0:lock 0
-0:rx_udpport 50010
-0:rx_udpport2 50011
-0:rx_hostname mpc2048
-0:flippeddatax 0
-
-#bottom
-1:rx_tcpport 1955
-1:lock 0
-1:rx_udpport 50004
-1:rx_udpport2 50005
-1:rx_hostname mpc2048
-1:flippeddatax 1
-
-settingsdir /home/l_frojdh/slsDetectorPackage/settingsdir/eiger
-outdir /home/l_frojdh/out
-vthreshold 1500
-vtr 4000
-dr 32
-
-threaded 1
-tengiga 0
-vhighvoltage 150
-iodelay 660
-
-#gappixels 1

python/simple-integration-tests/eiger/test.par

@@ -1,2 +0,0 @@
-vrf 3000
-vthreshold 1800

python/simple-integration-tests/eiger/test_dynamic_range.py

@@ -1,44 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Testing setting dynamic range for Eiger. 
-If the detector is not Eiger the tests are skipped
-"""
-import pytest
-import config_test
-from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
-from sls_detector.errors import DetectorValueError
-
-
-@eigertest
-def test_set_dynamic_range_and_make_acq(eiger):
-    eiger.exposure_time = 0.5
-    eiger.n_frames = 2
-    for dr in [4, 8, 16, 32]:
-        eiger.dynamic_range = dr
-        assert eiger.dynamic_range == dr
-        eiger.acq()
-        assert eiger.frames_caught == 2
-
-
-@eigertest
-def test_set_dynamic_range_raises(eiger):
-    with pytest.raises(DetectorValueError):
-        eiger.dynamic_range = 1
-    with pytest.raises(DetectorValueError):
-        eiger.dynamic_range = 75
-    with pytest.raises(DetectorValueError):
-        eiger.dynamic_range = -3
-    with pytest.raises(DetectorValueError):
-        eiger.dynamic_range = 12
-
-@eigertest
-def test_set_dynamic_range_reduces_speed(eiger):
-    eiger.readout_clock = 'Full Speed'
-    eiger.dynamic_range = 32
-    assert eiger.dynamic_range == 32
-    assert eiger.readout_clock == 'Quarter Speed'
-
-    eiger.dynamic_range = 16
-    assert eiger.dynamic_range == 16
-    assert eiger.readout_clock == 'Half Speed'

python/simple-integration-tests/eiger/test_eiger_specific.py

@@ -1,119 +0,0 @@
-import pytest
-import config_test
-import time
-from sls_detector.errors import DetectorValueError
-
-from fixtures import eiger, eigertest
-
-
-
-
-
-@eigertest
-def test_set_matrix_reset(eiger):
-    eiger.eiger_matrix_reset = False
-    assert eiger.eiger_matrix_reset == False
-    eiger.eiger_matrix_reset = True
-    assert eiger.eiger_matrix_reset == True
-
-@eigertest
-def test_set_tx_delay_left_single(eiger):
-    eiger.tx_delay.left[0] = 130
-    assert eiger.tx_delay.left[0] == 130
-    eiger.tx_delay.left[1] = 150
-    assert eiger.tx_delay.left[1] == 150
-    eiger.tx_delay.left[0] = 0
-    eiger.tx_delay.left[1] = 0
-    assert eiger.tx_delay.left[0] == 0
-    assert eiger.tx_delay.left[1] == 0
-
-@eigertest
-def test_set_tx_delay_right_single(eiger):
-    eiger.tx_delay.right[0] = 130
-    assert eiger.tx_delay.right[0] == 130
-    eiger.tx_delay.right[1] = 150
-    assert eiger.tx_delay.right[1] == 150
-    eiger.tx_delay.right[0] = 0
-    eiger.tx_delay.right[1] = 0
-    assert eiger.tx_delay.right[0] == 0
-    assert eiger.tx_delay.right[1] == 0
-
-@eigertest
-def test_set_tx_delay_frame_single(eiger):
-    eiger.tx_delay.frame[0] = 500
-    eiger.tx_delay.frame[1] = 600
-    assert eiger.tx_delay.frame[0] == 500
-    assert eiger.tx_delay.frame[1] == 600
-
-    eiger.tx_delay.frame[0] = 0
-    eiger.tx_delay.frame[1] = 0
-    assert eiger.tx_delay.frame[0] == 0
-    assert eiger.tx_delay.frame[1] == 0
-
-@eigertest
-def test_tx_delay_from_list(eiger):
-    eiger.tx_delay.left = [123,456]
-    assert eiger.tx_delay.left[:] == [123,456]
-    eiger.tx_delay.right = [789,100]
-    assert eiger.tx_delay.right[:] == [789,100]
-    eiger.tx_delay.frame = [1000,90000]
-    assert eiger.tx_delay.frame[:] == [1000,90000]
-
-    eiger.tx_delay.left = [0, 0]
-    eiger.tx_delay.right = [0, 0]
-    eiger.tx_delay.frame = [0, 0]
-    assert eiger.tx_delay.left[:] == [0, 0]
-    assert eiger.tx_delay.right[:] == [0, 0]
-    assert eiger.tx_delay.frame[:] == [0, 0]
-
-@eigertest
-def test_acitve(eiger):
-    eiger.file_write = False
-    eiger.reset_frames_caught()
-    eiger.active[1] = False
-    eiger.acq()
-    assert eiger._api.getFramesCaughtByReceiver(1) == 0
-    assert eiger._api.getFramesCaughtByReceiver(0) == 1
-    eiger.active = True
-    time.sleep(0.5)
-    eiger.acq()
-    assert eiger.frames_caught == 1
-
-@eigertest
-def test_set_default_settings(eiger):
-    eiger.default_settings()
-    assert eiger.n_frames == 1
-    assert eiger.exposure_time == 1
-    assert eiger.period == 0
-    assert eiger.n_cycles == 1
-    assert eiger.dynamic_range == 16
-
-@eigertest
-def test_flowcontrol10g(eiger):
-    eiger.flowcontrol_10g = True
-    assert eiger.flowcontrol_10g == True
-    eiger.flowcontrol_10g = False
-    assert eiger.flowcontrol_10g == False
-
-@eigertest
-def test_read_vcmp(eiger):
-    eiger.vthreshold = 1500
-    assert eiger.vcmp[:]  == [1500]*4*eiger.n_modules
-
-@eigertest
-def test_set_vcmp(eiger):
-    eiger.vcmp = [1000,1100,1200,1300,1400,1500,1600,1700]
-    assert eiger.vcmp[:] == [1000,1100,1200,1300,1400,1500,1600,1700]
-    eiger.vthreshold = 1500
-
-#Disabled only works with receiver on the same pc
-# @eigertest
-# def test_setup500k():
-#     from sls_detector import Eiger, free_shared_memory
-#     free_shared_memory()
-#     d = Eiger()
-#     d.setup500k(config_test.known_hostnames)
-#     d.acq()
-#     assert d.rx_tcpport == [1954,1955]
-#     assert d.frames_caught == 1
-#     #could assert more setting but if the frame is caught it worked...

python/simple-integration-tests/eiger/test_firmware.py

@@ -1,129 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Tests specific for the firmware.
-
-Check that register values are correct after starting an exposure
-
-0x4 exposure time
-0x5 period
-0x6 sub exposure time
-
-"""
-import pytest
-import config_test
-from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
-from sls_detector.errors import DetectorValueError
-from sls_detector.utils import  eiger_register_to_time
-
-# testdata_exptimes = [0.001, 0.002, 0.0236]
-
-@eigertest
-def test_short_exposure_time(eiger):
-    t = 1.23
-    eiger.exposure_time = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    #Register 0x4 holds exposure time
-    reg = eiger.register[0x4]
-    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
-
-@eigertest
-def test_short_minimal_exposure_time(eiger):
-    t = 1e-8
-    eiger.exposure_time = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    #Register 0x4 holds exposure time
-    reg = eiger.register[0x4]
-    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
-
-
-@eigertest
-def test_long_exposure_time(eiger):
-    t = 623
-    eiger.exposure_time = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    # Register 0x4 holds exposure time
-    reg = eiger.register[0x4]
-    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
-
-
-@eigertest
-def test_short_period(eiger):
-    t = 0.1
-    eiger.exposure_time = 0.001
-    eiger.period = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    # Register 0x5 holds period
-    reg = eiger.register[0x5]
-    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
-
-
-@eigertest
-def test_long_period(eiger):
-    t = 8900
-    eiger.exposure_time = 0.001
-    eiger.period = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    # Register 0x5 holds period
-    reg = eiger.register[0x5]
-    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
-
-@eigertest
-def test_zero_period_with_acq(eiger):
-    t = 0
-    eiger.exposure_time = 0.001
-    eiger.period = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    # Register 0x5 holds period
-    reg = eiger.register[0x5]
-    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
-
-
-testdata_times = [0.001, 0.002, 0.0236]
-@eigertest
-@pytest.mark.parametrize("t", testdata_times)
-def test_subexptime(eiger,t):
-    eiger.sub_exposure_time = t
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    # Register 0x6 holds sub exposure time
-    # time is stored straight as n clocks
-    reg = eiger.register[0x6]
-    assert pytest.approx(t, 1e-9) == reg/100e6
-
-
-@eigertest
-@pytest.mark.parametrize("t", testdata_times)
-def test_subdeadtime(eiger, t):
-    eiger.sub_deadtime = t
-    eiger.sub_exposure_time = 1
-    eiger.sub_exposure_time = 0.001
-    eiger.file_write = False
-    eiger.start_detector()
-    eiger.stop_detector()
-
-    # Register 0x7 holds sub period
-    # time is stored straight as n clocks
-    # exptime+deadtime
-    reg = eiger.register[0x7]
-    assert pytest.approx(t, 1e-7) == (reg/100e6-0.001)

python/simple-integration-tests/eiger/test_general.py

@@ -1,187 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-General tests for the Detector class. Should not depend on the connected detector. Aim is to have tests working
-for both Jungfrau and Eiger.
-
-NOTE! Uses hostnames from config_test
-"""
-
-import pytest
-import config_test
-from fixtures import detector
-from sls_detector.errors import DetectorValueError, DetectorError
-
-
-
-def test_error_handling(detector):
-    with pytest.raises(DetectorError):
-        detector._provoke_error()
-
-def test_not_busy(detector):
-    """Test that the detector is not busy from the start"""
-    assert detector.busy == False
-
-def test_reset_frames_caught(detector):
-    detector.file_write = False
-    detector.acq()
-    assert detector.frames_caught == 1
-    detector.reset_frames_caught()
-    assert detector.frames_caught == 0
-
-def test_set_busy_true_then_false(detector):
-    """Test both cases of assignment"""
-    detector.busy = True
-    assert detector.busy == True
-    detector.busy = False
-    assert detector.busy == False
-
-def test_set_readout_speed(detector):
-    for s in ['Full Speed', 'Half Speed', 'Quarter Speed', 'Super Slow Speed']:
-        detector.readout_clock = s
-        assert detector.readout_clock == s
-
-def test_wrong_speed_raises_error(detector):
-    with pytest.raises(KeyError):
-        detector.readout_clock = 'Something strange'
-
-def test_readout_clock_remains(detector):
-    s = detector.readout_clock
-    try:
-        detector.readout_clock = 'This does not exists'
-    except KeyError:
-        pass
-    assert detector.readout_clock == s
-
-def test_len_method(detector):
-    """to test this we need to know the length, this we get from the configuration of hostnames"""
-    assert len(detector) == len(config_test.known_hostnames)
-
-def test_setting_n_cycles_to_zero_gives_error(detector):
-    with pytest.raises(DetectorValueError):
-        detector.n_cycles = 0
-
-def test_setting_n_cycles_to_negative_gives_error(detector):
-    with pytest.raises(DetectorValueError):
-        detector.n_cycles = -50
-
-def test_set_cycles_frome_one_to_ten(detector):
-    for i in range(1,11):
-        detector.n_cycles = i
-        assert detector.n_cycles == i
-        detector.n_cycles = 1
-        assert detector.n_cycles == 1
-
-def test_get_detector_type(detector):
-    assert detector.detector_type == config_test.detector_type
-
-
-
-def test_set_file_index(detector):
-    detector.file_index = 5
-    assert detector.file_index == 5
-
-def test_negative_file_index_raises(detector):
-    with pytest.raises(ValueError):
-        detector.file_index = -8
-
-def test_setting_file_name(detector):
-    fname = 'hej'
-    detector.file_name = fname
-    assert detector.file_name == fname
-
-def test_set_file_write(detector):
-    detector.file_write = True
-    assert detector.file_write == True
-
-    detector.file_write = False
-    assert detector.file_write == False
-
-
-
-def test_set_high_voltage(detector):
-    detector.high_voltage = 55
-    assert detector.high_voltage == 55
-
-def test_negative_voltage_raises(detector):
-    with pytest.raises(DetectorValueError):
-        detector.high_voltage = -5
-
-def test_high_voltage_raises_on_to_high(detector):
-    with pytest.raises(DetectorValueError):
-        detector.high_voltage = 500
-
-
-
-def test_get_image_size(detector):
-    """Compares with the size in the config file"""
-    assert detector.image_size.rows == config_test.image_size[0]
-    assert detector.image_size.cols == config_test.image_size[1]
-
-def test_get_module_geometry(detector):
-    """Compares with the size in the config file"""
-    assert detector.module_geometry.horizontal == config_test.module_geometry[0]
-    assert detector.module_geometry.vertical == config_test.module_geometry[1]
-
-def test_set_nframes(detector):
-    detector.n_frames = 5
-    assert detector.n_frames == 5
-    detector.n_frames = 1
-    assert detector.n_frames == 1
-
-def test_set_n_measurements(detector):
-    detector.n_measurements = 7
-    assert detector.n_measurements == 7
-    detector.n_measurements = 1
-    assert detector.n_measurements == 1
-
-def test_negative_nframes_raises(detector):
-    with pytest.raises(DetectorValueError):
-        detector.n_frames = -2
-
-def test_nmodules(detector):
-    """Assume that the number of modules should be the same as the number of hostnames"""
-    assert detector.n_modules == len(config_test.known_hostnames)
-
-def test_is_detector_online(detector):
-    assert detector.online == True
-
-def test_set_online(detector):
-    detector.online = False
-    assert detector.online == False
-    detector.online = True
-    assert detector.online == True
-
-
-
-def test_receiver_is_online(detector):
-    assert detector.receiver_online == True
-
-def test_set_receiver_online(detector):
-    detector.receiver_online = False
-    assert detector.receiver_online == False
-    detector.receiver_online = True
-    assert detector.receiver_online == True
-
-def test_set_receiver_online_raises_on_non_bool(detector):
-    with pytest.raises(TypeError):
-        detector.receiver_online = 'probably not this'
-
-
-
-
-def test_set_period(detector):
-    detector.period = 5.123
-    assert detector.period == 5.123
-    detector.period = 0
-    assert detector.period == 0
-
-
-
-def test_set_timing_mode(detector):
-    detector.timing_mode = 'trigger'
-    assert detector.timing_mode == 'trigger'
-    detector.timing_mode = 'auto'
-    assert detector.timing_mode == 'auto'
-
-

python/simple-integration-tests/eiger/test_load_config.py

@@ -1,38 +0,0 @@
-
-import pytest
-import config_test
-import os
-dir_path = os.path.dirname(os.path.realpath(__file__))
-from sls_detector.detector import element_if_equal
-from sls_detector.errors import DetectorValueError
-
-
-from fixtures import eiger, eigertest
-
-
-@eigertest
-def test_load_config_file_eiger(eiger):
-    """Load a settings file and assert all settings"""
-    eiger.load_config(os.path.join(dir_path, 'test.config'))
-
-
-    assert eiger.rx_tcpport == [1954, 1955]
-    assert eiger.lock == False
-    assert eiger.rx_udpport == [50010, 50011, 50004, 50005]
-    assert eiger.rx_hostname == 'mpc2048'
-    assert eiger.flipped_data_x[:] == [False, True]
-    assert eiger.settings_path == config_test.settings_path
-    assert eiger.file_path == config_test.file_path
-    assert eiger.vthreshold == 1500
-    assert element_if_equal(eiger.dacs.vtr[:]) == 4000
-    assert eiger.dynamic_range == 32
-    assert eiger.tengiga == False
-    assert eiger.high_voltage == 150
-    assert element_if_equal(eiger.dacs.iodelay[:]) == 660
-
-@eigertest
-def test_load_parameters_file_eiger(eiger):
-    """Load a parametes file and assert the settings in the file"""
-    eiger.load_parameters(os.path.join(dir_path, 'test.par'))
-    assert element_if_equal(eiger.dacs.vrf[:]) == 3000
-    assert eiger.vthreshold == 1800

python/simple-integration-tests/eiger/test_network.py

@@ -1,81 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Tests for network related functions of the detector
-"""
-import pytest
-import config_test
-from fixtures import eiger, eigertest, detector
-
-
-# def test_last_client(detector):
-#     import socket
-#     # We probably should check for multiple ip's
-#     myip = socket.gethostbyname_ex(socket.gethostname())[-1][0]
-#     assert detector.last_client_ip == myip
-
-def test_get_hostname(detector):
-    for detector_host, config_host in zip(detector.hostname, config_test.known_hostnames):
-        assert detector_host == config_host
-
-def test_hostname_has_same_length_as_n_modules(detector):
-    assert len(detector.hostname) == detector.n_modules
-
-
-# # def test_get_receiver_hostname(detector):
-# #     """Assume that the receiver are on the local computer"""
-# #     import socket
-# #     host = socket.gethostname().split('.')[0]
-# #     assert detector.rx_hostname == host
-
-# def test_set_receiver_hostname(detector):
-#     import socket
-#     host = socket.gethostname().split('.')[0]
-#     phony_host = 'madeup'
-#     detector.rx_hostname = phony_host
-#     assert detector.rx_hostname == phony_host
-#     detector.rx_hostname = host
-#     assert detector.rx_hostname == host
-
-@eigertest
-def test_set_rx_zmqport_single_value(eiger):
-    eiger.rx_zmqport = 35000
-    assert eiger.rx_zmqport == [35000, 35001, 35002, 35003]
-
-@eigertest
-def test_set_rx_zmqport_list(eiger):
-    eiger.rx_zmqport = [37000, 38000]
-    assert eiger.rx_zmqport == [37000, 37001, 38000, 38001]
-
-@eigertest
-def test_set_rx_updport(eiger):
-    ports = [60010,60011,60012,60013]
-    eiger.rx_udpport = ports
-    assert eiger.rx_udpport == ports
-    eiger.acq()
-    assert eiger.frames_caught == 1
-
-@eigertest
-def test_rx_tcpport(eiger):
-    ports = eiger.rx_tcpport
-    eiger.rx_tcpport = [2000,2001]
-    assert eiger.rx_tcpport == [2000,2001]
-    eiger.rx_tcpport = ports
-    assert eiger.rx_tcpport == ports
-    eiger.acq()
-    assert eiger.frames_caught == 1
-
-# @eigertest
-# @pytest.mark.new
-# def test_enable_disable_tengiga(eiger):
-#     """
-#     This test does not check for dat on the 10Gbit link, only the set and get functions
-#     """
-#     eiger.tengiga = True
-#     assert eiger.tengiga == True
-#     eiger.tengiga = False
-#     assert eiger.tengiga == False
-
-
-
-#TODO! Add test for Jungfrau

python/simple-integration-tests/eiger/test_paths_and_files.py

@@ -1,54 +0,0 @@
-import pytest
-import config_test
-from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
-from sls_detector.errors import DetectorValueError
-
-
-
-
-@eigertest
-@pytest.mark.local
-def test_set_path(eiger, tmpdir):
-    import os
-    path = os.path.join(tmpdir.dirname, tmpdir.basename)
-    eiger.file_path = path
-    assert eiger.file_path == path
-
-@eigertest
-@pytest.mark.local
-def test_set_path_and_write_files(eiger, tmpdir):
-    import os
-    prefix = 'testprefix'
-    path = os.path.join(tmpdir.dirname, tmpdir.basename)
-    eiger.file_path = path
-    eiger.file_write = True
-    eiger.exposure_time = 0.1
-    eiger.n_frames = 1
-    eiger.timing_mode = 'auto'
-    eiger.file_name = prefix
-    eiger.file_index = 0
-    eiger.acq()
-
-    files = [f.basename for f in tmpdir.listdir()]
-
-    assert len(files) == 5
-    assert (prefix+'_d0_0.raw' in files) == True
-    assert (prefix+'_d1_0.raw' in files) == True
-    assert (prefix+'_d2_0.raw' in files) == True
-    assert (prefix+'_d3_0.raw' in files) == True
-
-def test_set_discard_policy(detector):
-    detector.frame_discard_policy = 'nodiscard'
-    assert detector.frame_discard_policy == 'nodiscard'
-    detector.frame_discard_policy = 'discardpartial'
-    assert detector.frame_discard_policy == 'discardpartial'
-    detector.frame_discard_policy = 'discardempty'
-    assert detector.frame_discard_policy == 'discardempty'
-
-def test_set_discard_policy_raises(detector):
-    with pytest.raises(ValueError):
-        detector.frame_discard_policy = 'adjfvadksvsj'
-
-def test_set_frames_perfile(detector):
-    detector.frames_per_file = 5000
-    assert detector.frames_per_file == 5000

python/simple-integration-tests/eiger/test_threshold.py

@@ -1,47 +0,0 @@
-import pytest
-import config_test
-import time
-from sls_detector.errors import DetectorValueError
-import os
-from fixtures import eiger, eigertest
-
-
-testdata_th = [0,333,500,1750,2000]
-
-@eigertest
-@pytest.mark.parametrize("th", testdata_th)
-def test_set_vthreshold(eiger, th):
-    eiger.vthreshold = th
-    assert eiger.vthreshold == th
-
-@eigertest
-def test_vthreshold_with_different_vcmp(eiger):
-    #When vcmp is different for the chip vthreshold should return -1
-    eiger.vthreshold = 1500
-    eiger.dacs.vcmp_ll = 1400
-    assert eiger.vthreshold == -1
-
-@eigertest
-def test_set_settingsdir(eiger):
-    path = os.path.dirname( os.path.realpath(__file__) )
-    path = os.path.join(path, 'settingsdir')
-    eiger.settings_path = path
-    assert eiger.settings_path == path
-
-@eigertest
-def test_set_trimmed_energies(eiger):
-    en = [5000,6000,7000]
-    eiger.trimmed_energies = en
-    assert eiger.trimmed_energies == en
-
-
-#TODO! add checks for vcmp as well and improve naming
-#TODO! remove dependency on beb number
-testdata_en = [(5000, 500),(5500,750),(6000,1000),(6200,1100),(7000,1500)]
-@eigertest
-@pytest.mark.parametrize('val', testdata_en)
-def test_set_energy_threshold(eiger, val):
-    eiger.settings = 'standard'
-    eiger.threshold = val[0]
-    assert eiger.threshold == val[0]
-    assert eiger.dacs.vrf[0] == val[1]

python/simple-integration-tests/eiger/test_time.py

@@ -1,136 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Tests regarding exposure time and period of the detector
-Set and get test as well as test for duration and on detector 
-measurement of the time.
-"""
-import pytest
-import config_test
-from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
-from sls_detector.errors import DetectorValueError, DetectorError
-import time
-
-
-testdata_times = [1e-8, 0.001, 0.5, 3.125, 5.0, 600, 784]
-@pytest.mark.parametrize("t", testdata_times)
-def test_set_and_get_exposure_time(eiger, t):
-    """
-    Test that the exposure time we set in the detector
-    is the same as the one read back
-    """
-    eiger.exposure_time = t
-    assert eiger.exposure_time == t
-
-
-def test_negative_exposure_time_raises_error(eiger):
-    with pytest.raises(DetectorValueError):
-        eiger.exposure_time = -15
-
-
-testdata_times = [0.001, 0.0025, 0.005, 5]
-@pytest.mark.parametrize("t", testdata_times)
-def test_set_subexptime(eiger, t):
-    eiger.sub_exposure_time = t
-    assert eiger.sub_exposure_time == t
-
-
-testdata_times = [-5,6,7,50]
-@pytest.mark.parametrize("t", testdata_times)
-def test_set_subextime_too_large_or_neg(eiger, t):
-    with pytest.raises((DetectorError, DetectorValueError)):
-        eiger.sub_exposure_time = t
-
-
-
-testdata_times = [0.2, 0.5, 1, 2, 5, 7]
-@pytest.mark.slow
-@pytest.mark.parametrize("t", testdata_times)
-def test_measure_exposure_time_from_python(eiger, t):
-    """ 
-    The main idea with this test is to make sure the overhead of a
-    single acq is less than tol[s]. This test also catches stupid bugs
-    that would for example not change the exposure time or make acquire 
-    not blocking. 
-    """
-    tol = 0.5
-    eiger.dynamic_range = 16
-    eiger.file_write = False
-    eiger.n_frames = 1
-    eiger.exposure_time = t
-    assert eiger.exposure_time == t
-    t0 = time.time()
-    eiger.acq()
-    duration = time.time()-t0
-    assert duration < (t+tol)
-
-
-testdata_times = [0.5, 1, 3, 5]
-
-
-@pytest.mark.slow
-@pytest.mark.parametrize("t", testdata_times)
-def test_measure_period_from_python_and_detector(eiger, t):
-    tol = 0.5
-    nframes = 5
-    eiger.dynamic_range = 16
-    eiger.file_write = False
-    eiger.n_frames = nframes
-    eiger.exposure_time = 0.001
-    eiger.period = t
-    t0 = time.time()
-    eiger.acq()
-    duration = time.time()-t0
-    assert duration < t*(nframes-1)+tol
-    for mp in eiger.measured_period:
-        assert pytest.approx(mp, 1e-5) == t
-
-
-testdata_times = [0.001, 0.002, 0.003, 0.005, 0.01]
-@pytest.mark.parametrize("t", testdata_times)
-def test_measure_subperiod_nonparallel(eiger, t):
-    readout_time = 500e-6
-    eiger.dynamic_range = 32
-    eiger.file_write = False
-    eiger.flags = 'nonparallel'
-    eiger.n_frames = 1
-    eiger.period = 0
-    eiger.exposure_time = 0.5
-    eiger.sub_exposure_time = t
-    eiger.sub_deadtime = 0
-    eiger.acq()
-    for mp in eiger.measured_subperiod:
-        assert pytest.approx(mp, abs=1e-5) == t+readout_time
-
-
-@pytest.mark.parametrize("t", testdata_times)
-def test_measure_subperiod_parallel(eiger, t):
-    readout_time = 12e-6
-    eiger.dynamic_range = 32
-    eiger.file_write = False
-    eiger.flags = 'parallel'
-    eiger.n_frames = 1
-    eiger.period = 0
-    eiger.exposure_time = 0.5
-    eiger.sub_exposure_time = t
-    eiger.sub_deadtime = 0
-    eiger.acq()
-    for mp in eiger.measured_subperiod:
-        assert pytest.approx(mp, abs=1e-5) == t+readout_time
-
-
-@pytest.mark.parametrize("t", testdata_times)
-def test_measure_subperiod_parallel_when_changing_deadtime(eiger, t):
-    readout_time = 12e-6
-    exposure_time = 0.001
-    eiger.dynamic_range = 32
-    eiger.file_write = False
-    eiger.flags = 'parallel'
-    eiger.n_frames = 1
-    eiger.period = 0
-    eiger.exposure_time = 0.5
-    eiger.sub_exposure_time = exposure_time
-    eiger.sub_deadtime = t
-    eiger.acq()
-    for mp in eiger.measured_subperiod:
-        assert pytest.approx(mp, abs=1e-5) == t+exposure_time

python/simple-integration-tests/eiger/test_trimbits_and_dacs.py

@@ -1,34 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Tests for trimbit and dac related functions
-"""
-import pytest
-import config_test
-from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
-from sls_detector.errors import DetectorValueError
-
-
-@eigertest
-def test_set_trimbits(eiger):
-    """Limited values due to time"""
-    for i in [17, 32, 60]:
-        print(i)
-        eiger.trimbits = i
-        assert eiger.trimbits == i
-
-@eigertest
-def test_set_trimbits_raises_on_too_big(eiger):
-    with pytest.raises(DetectorValueError):
-        eiger.trimbits = 75
-
-@eigertest
-def test_set_trimbits_raises_on_negative(eiger):
-    with pytest.raises(DetectorValueError):
-        eiger.trimbits = -5
-
-
-# @jungfrautest
-# def test_jungfrau(jungfrau):
-#     """Example of a test that is not run with Eiger connected"""
-#     pass

python/simple-integration-tests/eiger/test_version_numbers.py

@@ -1,16 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Tests for hostname related functions of the detector
-"""
-import pytest
-import config_test
-from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
-from sls_detector.errors import DetectorValueError
-
-
-
-def test_firmware_version(detector):
-    assert detector.firmware_version == config_test.fw_version
-
-

python/simple-integration-tests/eiger/write_tb_files.py

@@ -1,42 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Created on Tue May 22 14:13:48 2018
-
-@author: l_frojdh
-"""
-import os
-from sls_detector_tools.io import write_trimbit_file
-from sls_detector_tools import mask
-
-energy = [5000, 6000, 7000]
-vrf =     [500, 1000, 1500]
-
-for i,e in enumerate(energy):
-    dacs = np.array(  [[   0.,    0.],   #vsvp
-                       [4000., 4000.],  #vtr
-                       [vrf[i], vrf[i]],  #vrf
-                       [1400., 1400.],  #vrs
-                       [4000., 4000.],  #vsvn
-                       [2556., 2556.],  #vtgstv
-                       [1400., 1400.],  #vcmp_ll
-                       [1500., 1500.],  #vcmp_lr
-                       [4000., 4000.],  #vcall
-                       [1500., 1500.],  #vcmp_rl
-                       [1100., 1100.],  #rxb_rb
-                       [1100., 1100.],  #rxb_lb
-                       [1500., 1500.],  #vcmp_rr
-                       [1500., 1500.],  #vcp
-                       [2000., 2000.],  #vcn
-                       [1550., 1550.],  #vis
-                       [ 660.,  660.],  #iodelay
-                       [   0.,    0.],  #tau
-                       ]) 
-    
-    tb = np.zeros((256,1024))
-    
-    for beb in [83,98]:
-        write_trimbit_file(f'settingsdir/standard/{e}eV/noise.sn{beb:03d}', tb, dacs[:,0])
-#print(os.getcwd())
-    
-#print( os.path.realpath(__file__))

python/simple-integration-tests/jungfrau_0_6/config_test.py

@@ -1,17 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Created on Tue Nov 14 16:49:07 2017
-
-@author: l_frojdh
-"""
-
-fw_version = 0x180220
-detector_type = 'Jungfrau'
-known_hostnames = ['bchip038']
-image_size = (512,1024) #rows, cols
-module_geometry = (1,1) #horizontal, vertical
-
-#Remember to change these in the settings file as well!
-settings_path = '/home/l_lopez/projects/slsDetectorPackage/settingsdir/jungfrau'
-file_path = '/home/l_lopez/out'

python/simple-integration-tests/jungfrau_0_6/fixtures.py

@@ -1,23 +0,0 @@
-import pytest
-
-from sls_detector import Detector
-
-@pytest.fixture
-def detector():
-    from sls_detector import Detector
-    return Detector()
-
-@pytest.fixture
-def eiger():
-    from sls_detector import Eiger
-    return Eiger()
-
-
-@pytest.fixture
-def jungfrau():
-    from sls_detector import Jungfrau
-    return Jungfrau()
-
-detector_type = Detector().detector_type
-eigertest = pytest.mark.skipif(detector_type != 'Eiger', reason = 'Only valid for Eiger')
-jungfrautest = pytest.mark.skipif(detector_type != 'Jungfrau', reason = 'Only valid for Jungfrau')

python/simple-integration-tests/jungfrau_0_6/test_main.py

@@ -1,17 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-General tests for the Jungfrau detector.
-
-NOTE! Uses hostnames from config_test
-"""
-
-import pytest
-import config_test
-import tests
-
-import os
-dir_path = os.path.dirname(os.path.realpath(__file__))
-
-pytest.main(['-x', '-s', os.path.join(dir_path, 'tests/test_load_config.py')])            #Test 1
-pytest.main(['-x', '-s', os.path.join(dir_path, 'tests/test_overtemperature.py')])        #Test 2

python/simple-integration-tests/jungfrau_0_6/tests/test.config

@@ -1,21 +0,0 @@
-detsizechan 1024 512
-
-settingsdir /home/l_lopez/projects/slsDetectorPackage/settingsdir/jungfrau
-caldir /home/l_lopez/projects/slsDetectorPackage/settingsdir/jungfrau
-lock 0
-
-hostname bchip094+
-
-rx_udpport 1754
-rx_udpip 10.1.1.107
-rx_udpmac 90:E2:BA:9A:4F:D4
-detectorip 10.1.1.9
-detectormac 00:aa:bb:cc:dd:ee
-configuremac 0
-
-powerchip 1
-timing auto
-
-outdir /home/l_lopez/out
-threaded 1
-high

python/simple-integration-tests/jungfrau_0_6/tests/test.par

@@ -1 +0,0 @@
-vhighvoltage 200

python/simple-integration-tests/jungfrau_0_6/tests/test_load_config.py

@@ -1,43 +0,0 @@
-
-import pytest
-import config_test
-import os
-dir_path = os.path.dirname(os.path.realpath(__file__))
-
-from fixtures import jungfrau, jungfrautest
-
-
-def load_config_file_jungfrau_test(jungfrau):
-    """Load a settings file and assert all settings"""
-
-    print('\tStarting load_config_file_jungfrau_test test case')
-
-    jungfrau.free_shared_memory
-    jungfrau.load_config(os.path.join(dir_path, 'test.config'))
-
-    assert jungfrau.lock == False
-    assert jungfrau.rx_udpport == ['1754']
-    assert jungfrau.hostname == ['bchip094']
-    assert jungfrau.firmware_version == config_test.fw_version
-
-    print('\tFinished load_config_file_jungfrau_test test case')
-
-def load_parameters_file_jungfrau_test(jungfrau):
-    """Load a parametes file and assert the settings in the file"""
-
-    print('\tStarting load_parameters_file_jungfrau_test test case')
-
-    jungfrau.load_parameters(os.path.join(dir_path, 'test.par'))
-    assert jungfrau.high_voltage == 200
-
-    print('\tFinished load_parameters_file_jungfrau_test test case')
-
-@jungfrautest
-def test_main(jungfrau):
-    print('\nTesting configuration file loading')
-
-    load_config_file_jungfrau_test(jungfrau)
-    load_parameters_file_jungfrau_test(jungfrau)
-
-    print('Tested configuration file loading')
-

python/simple-integration-tests/jungfrau_0_6/tests/test_overtemperature.py

@@ -1,68 +0,0 @@
-
-import pytest
-import config_test
-import time
-from fixtures import jungfrau, jungfrautest
-
-def powerchip_test(jungfrau, control):
-    """
-
-    Test the main overtemperature protection control
-
-    """
-    #Set test initial conditions
-    print('\tStarting powerchip_test test case')
-
-    jungfrau.power_chip = False
-    jungfrau.temperature_control = control
-    assert jungfrau.power_chip == False
-    jungfrau.temperature_threshold = 35
-    jungfrau.power_chip = True
-
-
-    if jungfrau.temperature_control is True:
-        if jungfrau.temperature_event is True:
-            assert jungfrau.power_chip == False
-            jungfrau.power_chip = True
-            assert jungfrau.power_chip == False
-            jungfrau.temperature_control = False
-            assert jungfrau.power_chip == True
-            jungfrau.temperature_control = True
-            jungfrau.temperature_threshold = 50
-            assert jungfrau.power_chip == False
-
-            print('\t\tWaiting to cool down the board. This may take a while...')
-            while jungfrau.temperature_threshold < jungfrau.temp.fpga[0]:
-                time.sleep(5)
-                print('\t\tJungfrau MCB temperature: {0:.2f} °C'.format(jungfrau.temp.fpga[0]))
-
-            #Leave enough time to let the board cool down a bit more
-            time.sleep(30)
-            jungfrau.reset_temperature_event()
-
-            assert jungfrau.temperature_event == False
-            assert jungfrau.power_chip == True
-
-        else:
-            assert jungfrau.power_chip == True
-    else:
-        print('\t\tWaiting to warm up the board. This may take a while...')
-        while jungfrau.temperature_threshold > jungfrau.temp.fpga[0]:
-            time.sleep(5)
-            print('\t\tJungfrau MCB temperature: {0:.2f} °C'.format(jungfrau.temp.fpga[0]))
-
-        assert jungfrau.temperature_event == False
-        assert jungfrau.power_chip == True
-
-    print('\tFinished powerchip_test test case')
-
-
-#@jungfrautest
-def test_main(jungfrau):
-
-    print('\nTesting overtemperature protection control')
-
-    powerchip_test(jungfrau, False)
-    powerchip_test(jungfrau, True)
-
-    print('Tested overtemperature protection control')

python/sls_detector/__init__.py

@@ -1,6 +0,0 @@
-from .detector import Detector, DetectorError, free_shared_memory
-from .eiger import Eiger
-from .experimental import ExperimentalDetector
-from .jungfrau import Jungfrau
-from .jungfrau_ctb import JungfrauCTB
-from _sls_detector import DetectorApi

python/sls_detector/adcs.py

@@ -1,40 +0,0 @@
-from functools import partial
-class Adc:
-    def __init__(self, name, detector):
-        self.name = name
-        self._detector = detector
-        self.get_nmod = self._detector._api.getNumberOfDetectors
-        # Bind functions to get and set the dac
-        self.get = partial(self._detector._api.getAdc, self.name)
-
-
-    def __getitem__(self, key):
-        """
-        Get dacs either by slice, key or list
-        """
-        if key == slice(None, None, None):
-            return [self.get(i) / 1000 for i in range(self.get_nmod())]
-        elif isinstance(key, Iterable):
-            return [self.get(k) / 1000 for k in key]
-        else:
-            return self.get(key) / 1000
-
-    def __repr__(self):
-        """String representation for a single adc in all modules"""
-        degree_sign = u'\N{DEGREE SIGN}'
-        r_str = ['{:14s}: '.format(self.name)]
-        r_str += ['{:6.2f}{:s}C, '.format(self.get(i)/1000, degree_sign) for i in range(self.get_nmod())]
-        return ''.join(r_str).strip(', ')
-
-
-
-class DetectorAdcs:
-    """
-    Interface to the ADCs on the readout board
-    """
-    def __iter__(self):
-        for attr, value in self.__dict__.items():
-            yield value
-
-    def __repr__(self):
-        return '\n'.join([str(t) for t in self])

python/sls_detector/dacs.py

@@ -1,125 +0,0 @@
-from .detector_property import DetectorProperty
-from functools import partial
-import numpy as np
-
-class Dac(DetectorProperty):
-    """
-    This class represents a dac on the detector. One instance handles all
-    dacs with the same name for a multi detector instance.
-
-    .. note ::
-
-        This class is used to build up DetectorDacs and is in general
-        not directly accessed to the user.
-
-
-    """
-    def __init__(self, name, low, high, default, detector):
-
-        super().__init__(partial(detector._api.getDac, name),
-                         partial(detector._api.setDac, name),
-                         detector._api.getNumberOfDetectors,
-                         name)
-
-        self.min_value = low
-        self.max_value = high
-        self.default = default
-
-
-
-    def __repr__(self):
-        """String representation for a single dac in all modules"""
-        r_str = ['{:10s}: '.format(self.__name__)]
-        r_str += ['{:5d}, '.format(self.get(i)) for i in range(self.get_nmod())]
-        return ''.join(r_str).strip(', ')
-
-
-class DetectorDacs:
-    _dacs = [('vsvp',    0, 4000,    0),
-             ('vtr',     0, 4000, 2500),
-             ('vrf',     0, 4000, 3300),
-             ('vrs',     0, 4000, 1400),
-             ('vsvn',    0, 4000, 4000),
-             ('vtgstv',  0, 4000, 2556),
-             ('vcmp_ll', 0, 4000, 1500),
-             ('vcmp_lr', 0, 4000, 1500),
-             ('vcall',   0, 4000, 4000),
-             ('vcmp_rl', 0, 4000, 1500),
-             ('rxb_rb',  0, 4000, 1100),
-             ('rxb_lb',  0, 4000, 1100),
-             ('vcmp_rr', 0, 4000, 1500),
-             ('vcp',     0, 4000,  200),
-             ('vcn',     0, 4000, 2000),
-             ('vis',     0, 4000, 1550),
-             ('iodelay', 0, 4000,  660)]
-    _dacnames = [_d[0] for _d in _dacs]
-
-    def __init__(self, detector):
-        # We need to at least initially know which detector we are connected to
-        self._detector = detector
-
-        # Index to support iteration
-        self._current = 0
-
-        # Populate the dacs
-        for _d in self._dacs:
-            setattr(self, '_'+_d[0], Dac(*_d, detector))
-
-    def __getattr__(self, name):
-        return self.__getattribute__('_' + name)
-
-
-    def __setattr__(self, name, value):
-        if name in self._dacnames:
-            return self.__getattribute__('_' + name).__setitem__(slice(None, None, None), value)
-        else:
-            super().__setattr__(name, value)
-
-    def __next__(self):
-        if self._current >= len(self._dacs):
-            self._current = 0
-            raise StopIteration
-        else:
-            self._current += 1
-            return self.__getattr__(self._dacnames[self._current-1])
-
-    def __iter__(self):
-        return self
-
-    def __repr__(self):
-        r_str = ['========== DACS =========']
-        r_str += [repr(dac) for dac in self]
-        return '\n'.join(r_str)
-
-    def get_asarray(self):
-        """
-        Read the dacs into a numpy array with dimensions [ndacs, nmodules]
-        """
-        dac_array = np.zeros((len(self._dacs), self._detector.n_modules))
-        for i, _d in enumerate(self):
-            dac_array[i,:] = _d[:]
-        return dac_array
-
-    def set_from_array(self, dac_array):
-        """
-        Set the dacs from an numpy array with dac values. [ndacs, nmodules]
-        """
-        dac_array = dac_array.astype(np.int)
-        for i, _d in enumerate(self):
-            _d[:] = dac_array[i]
-
-    def set_default(self):
-        """
-        Set all dacs to their default values
-        """
-        for _d in self:
-            _d[:] = _d.default
-
-    def update_nmod(self):
-        """
-        Update the cached value of nmod, needs to be run after adding or
-        removing detectors
-        """
-        for _d in self:
-            _d._n_modules = self._detector.n_modules
-

python/sls_detector/decorators.py

@@ -1,55 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Function decorators for the sls_detector.
-"""
-from .errors import DetectorError
-import functools
-
-
-def error_handling(func):
-    """
-    Check for errors registered by the slsDetectorSoftware
-    """
-    @functools.wraps(func)
-    def wrapper(self, *args, **kwargs):
-        
-        # remove any previous errors
-        self._api.clearErrorMask()
-        
-        # call function
-        result = func(self, *args, **kwargs)
-        
-        # check for new errors
-        m = self.error_mask
-        if m != 0:
-            msg = self.error_message
-            self._api.clearErrorMask()
-            raise DetectorError(msg)
-        return result
-
-    return wrapper
-
-
-def property_error_handling(func):
-    """
-    Check for errors registered by the slsDetectorSoftware
-    """
-
-    @functools.wraps(func)
-    def wrapper(self, *args, **kwargs):
-        # remove any previous errors
-        self._detector._api.clearErrorMask()
-
-        # call function
-        result = func(self, *args, **kwargs)
-
-        # check for new errors
-        m = self._detector.error_mask
-        if m != 0:
-            msg = self._detector.error_message
-            self._detector._api.clearErrorMask()
-            raise DetectorError(msg)
-        return result
-
-    return wrapper

python/sls_detector/detector_property.py

@@ -1,51 +0,0 @@
-from collections.abc import Iterable
-import numpy as np
-
-class DetectorProperty:
-    """
-    Base class for a detector property that should be accessed by name and index
-    TODO! Calls are not in parallel and exposes object that can be passes around
-    """
-    def __init__(self, get_func, set_func, nmod_func, name):
-        self.get = get_func
-        self.set = set_func
-        self.get_nmod = nmod_func
-        self.__name__ = name
-
-    def __getitem__(self, key):
-        if key == slice(None, None, None):
-            return [self.get(i) for i in range(self.get_nmod())]
-        elif isinstance(key, Iterable):
-            return [self.get(k) for k in key]
-        else:
-            return self.get(key)
-
-    def __setitem__(self, key, value):
-        #operate on all values
-        if key == slice(None, None, None):
-            if isinstance(value, (np.integer, int)):
-                for i in range(self.get_nmod()):
-                    self.set(i, value)
-            elif isinstance(value, Iterable):
-                for i in range(self.get_nmod()):
-                    self.set(i, value[i])
-            else:
-                raise ValueError('Value should be int or np.integer not', type(value))
-        
-        #Iterate over some
-        elif isinstance(key, Iterable):
-            if isinstance(value, Iterable):
-                for k,v in zip(key, value):
-                    self.set(k,v)
-
-            elif isinstance(value, int):
-                for k in key:
-                    self.set(k, value)
-
-        #Set single value
-        elif isinstance(key, int):
-            self.set(key, value)
-
-    def __repr__(self):
-        s = ', '.join(str(v) for v in self[:])
-        return '{}: [{}]'.format(self.__name__, s)

python/sls_detector/eiger.py

@@ -1,618 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Created on Wed Dec  6 11:51:18 2017
-
-@author: l_frojdh
-"""
-
-import socket
-from collections.abc import Iterable
-from collections import namedtuple
-from functools import partial
-
-from .adcs import Adc, DetectorAdcs
-from .dacs import DetectorDacs
-from .decorators import error_handling
-from .detector import Detector
-from .detector_property import DetectorProperty
-from .utils import element_if_equal
-from sls_detector.errors import DetectorValueError, DetectorError
-
-class EigerVcmp:
-    """
-    Convenience class to be able to loop over vcmp for Eiger
-    
-    
-    .. todo::
-        
-        Support single assignment and perhaps unify with Dac class
-    
-    """
-    
-    def __init__(self, detector):
-        _names = ['vcmp_ll',
-                  'vcmp_lr',
-                  'vcmp_rl',
-                  'vcmp_rr']
-        self.set = []
-        self.get = []
-        for i in range(detector.n_modules):
-            if i % 2 == 0:
-                name = _names
-            else:
-                name = _names[::-1]
-            for n in name:
-                self.set.append(partial(detector._api.setDac, n, i))
-                self.get.append(partial(detector._api.getDac, n, i))
-    
-    def __getitem__(self, key):
-        if key == slice(None, None, None):
-            return [_d() for _d in self.get]
-        return self.get[key]()
-    
-    def __setitem__(self, i, value):
-        self.set[i](value)
-
-    def __repr__(self):
-        return 'vcmp: '+ str(self[:])
-
-
-class EigerDacs(DetectorDacs):
-    _dacs = [('vsvp',    0, 4000,    0),
-             ('vtr',     0, 4000, 2500),
-             ('vrf',     0, 4000, 3300),
-             ('vrs',     0, 4000, 1400),
-             ('vsvn',    0, 4000, 4000),
-             ('vtgstv',  0, 4000, 2556),
-             ('vcmp_ll', 0, 4000, 1500),
-             ('vcmp_lr', 0, 4000, 1500),
-             ('vcall',   0, 4000, 4000),
-             ('vcmp_rl', 0, 4000, 1500),
-             ('rxb_rb',  0, 4000, 1100),
-             ('rxb_lb',  0, 4000, 1100),
-             ('vcmp_rr', 0, 4000, 1500),
-             ('vcp',     0, 4000,  200),
-             ('vcn',     0, 4000, 2000),
-             ('vis',     0, 4000, 1550),
-             ('iodelay', 0, 4000,  660)]
-    _dacnames = [_d[0] for _d in _dacs]
-
-
-# noinspection PyProtectedMember
-class DetectorDelays:
-    _delaynames = ['frame', 'left', 'right']
-
-    def __init__(self, detector):
-        # We need to at least initially know which detector we are connected to
-        self._detector = detector
-        
-        setattr(self, '_frame', DetectorProperty(detector._api.getDelayFrame,
-                                                 detector._api.setDelayFrame,
-                                                 detector._api.getNumberOfDetectors,
-                                                 'frame'))
-
-        setattr(self, '_left', DetectorProperty(detector._api.getDelayLeft,
-                                                detector._api.setDelayLeft,
-                                                detector._api.getNumberOfDetectors,
-                                                'left'))
-
-        setattr(self, '_right', DetectorProperty(detector._api.getDelayRight,
-                                                 detector._api.setDelayRight,
-                                                 detector._api.getNumberOfDetectors,
-                                                 'right'))
-        # Index to support iteration
-        self._current = 0
-
-    def __getattr__(self, name):
-        return self.__getattribute__('_' + name)
-
-    def __setattr__(self, name, value):
-        if name in self._delaynames:
-            return self.__getattribute__('_' + name).__setitem__(slice(None, None, None), value)
-        else:
-            super().__setattr__(name, value)
-
-    def __next__(self):
-        if self._current >= len(self._delaynames):
-            self._current = 0
-            raise StopIteration
-        else:
-            self._current += 1
-            return self.__getattr__(self._delaynames[self._current-1])
-
-    def __iter__(self):
-        return self
-
-    def __repr__(self):
-        hn = self._detector.hostname
-        r_str = ['Transmission delay [ns]\n'
-                 '{:11s}{:>8s}{:>8s}{:>8s}'.format('', 'left', 'right', 'frame')]
-        for i in range(self._detector.n_modules):
-            r_str.append('{:2d}:{:8s}{:>8d}{:>8d}{:>8d}'.format(i, hn[i], self.left[i], self.right[i], self.frame[i]))
-        return '\n'.join(r_str)
-
-
-class Eiger(Detector):
-    """
-    Subclassing Detector to set up correct dacs and detector specific 
-    functions. 
-    """
-    _detector_dynamic_range = [4, 8, 16, 32]
-
-
-    _settings = ['standard', 'highgain', 'lowgain', 'veryhighgain', 'verylowgain']
-    """available settings for Eiger, note almost always standard"""
-
-    def __init__(self, id=0):
-        super().__init__(id)
-
-        self._active = DetectorProperty(self._api.getActive,
-                                        self._api.setActive,
-                                        self._api.getNumberOfDetectors,
-                                        'active')
-
-        self._vcmp = EigerVcmp(self)
-        self._dacs = EigerDacs(self)
-        self._trimbit_limits = namedtuple('trimbit_limits', ['min', 'max'])(0, 63)
-        self._delay = DetectorDelays(self)
-        
-        # Eiger specific adcs
-        self._temp = DetectorAdcs()
-        self._temp.fpga = Adc('temp_fpga', self)
-        self._temp.fpgaext = Adc('temp_fpgaext', self)
-        self._temp.t10ge = Adc('temp_10ge', self)
-        self._temp.dcdc = Adc('temp_dcdc', self)
-        self._temp.sodl = Adc('temp_sodl', self)
-        self._temp.sodr = Adc('temp_sodr', self)
-        self._temp.fpgafl = Adc('temp_fpgafl', self)
-        self._temp.fpgafr = Adc('temp_fpgafr', self)
-
-    @property
-    @error_handling
-    def active(self):
-        """
-        Is the detector active? Can be used to enable or disable a detector
-        module
-        
-        Examples
-        ----------
-        
-        ::
-            
-            d.active
-            >> active: [True, True]
-            
-            d.active[1] = False
-            >> active: [True, False]
-        """
-        return self._active
-    
-    @active.setter
-    @error_handling
-    def active(self, value):
-        self._active[:] = value
-    
-    @property
-    def measured_period(self):
-        return self._api.getMeasuredPeriod()
-
-    @property
-    def measured_subperiod(self):
-        return self._api.getMeasuredSubPeriod()
-
-    @property
-    @error_handling
-    def add_gappixels(self):
-       """Enable or disable the (virual) pixels between ASICs
-
-       Examples
-       ----------
-
-       ::
-
-           d.add_gappixels = True
-
-           d.add_gappixels
-           >> True
-
-       """
-       return self._api.getGapPixels()
-
-    @add_gappixels.setter
-    @error_handling
-    def add_gappixels(self, value):
-       self._api.setGapPixels(value)
-
-    @property
-    def dacs(self):
-        """
-
-        An instance of DetectorDacs used for accessing the dacs of a single
-        or multi detector.
-
-        Examples
-        ---------
-
-        ::
-
-            d = Eiger()
-
-            #Set all vrf to 1500
-            d.dacs.vrf = 1500
-
-            #Check vrf
-            d.dacs.vrf
-            >> vrf       :  1500,  1500
-
-            #Set a single vtr
-            d.dacs.vtr[0] = 1800
-
-            #Set vrf with multiple values
-            d.dacs.vrf = [3500,3700]
-            d.dacs.vrf
-            >> vrf       :  3500,  3700
-
-            #read into a variable
-            var = d.dacs.vrf[:]
-
-            #set multiple with multiple values, mostly used for large systems
-            d.dacs.vcall[0,1] = [3500,3600]
-            d.dacs.vcall
-            >> vcall     :  3500,  3600
-
-            d.dacs
-            >>
-            ========== DACS =========
-            vsvp      :     0,     0
-            vtr       :  4000,  4000
-            vrf       :  1900,  1900
-            vrs       :  1400,  1400
-            vsvn      :  4000,  4000
-            vtgstv    :  2556,  2556
-            vcmp_ll   :  1500,  1500
-            vcmp_lr   :  1500,  1500
-            vcall     :  4000,  4000
-            vcmp_rl   :  1500,  1500
-            rxb_rb    :  1100,  1100
-            rxb_lb    :  1100,  1100
-            vcmp_rr   :  1500,  1500
-            vcp       :  1500,  1500
-            vcn       :  2000,  2000
-            vis       :  1550,  1550
-            iodelay   :   660,   660
-
-        """
-        return self._dacs
-
-    @property
-    @error_handling
-    def tx_delay(self):
-        """
-        Transmission delay of the modules to allow running the detector
-        in a network not supporting the full speed of the detector.
-
-
-        ::
-            
-            d.tx_delay
-            >>
-            Transmission delay [ns]
-                           left   right   frame
-             0:beb048         0   15000       0
-             1:beb049       100  190000     100
-             
-             d.tx_delay.left = [2000,5000]
-        """
-        return self._delay
-
-    def default_settings(self):
-        """
-        reset the detector to some type of standard settings
-        mostly used when testing
-        """
-        self.n_frames = 1
-        self.exposure_time = 1
-        self.period = 0
-        self.n_cycles = 1
-        self.n_measurements = 1
-        self.dynamic_range = 16
-
-    @property
-    @error_handling
-    def eiger_matrix_reset(self):
-        """
-        Matrix reset bit for Eiger.
-
-        :py:obj:`True` : Normal operation, the matrix is reset before each acq.
-        :py:obj:`False` : Matrix reset disabled. Used to not reset before
-        reading out analog test pulses.
-        """
-        return self._api.getCounterBit()
-
-    @eiger_matrix_reset.setter
-    @error_handling
-    def eiger_matrix_reset(self, value):
-        self._api.setCounterBit(value)
-
-    @property
-    @error_handling
-    def flowcontrol_10g(self):
-        """
-        :py:obj:`True` - Flow control enabled :py:obj:`False` flow control disabled.
-        Sets for all moduels, if for some reason access to a single module is needed
-        this can be done trough the C++ API.
-
-        """
-        fc = self._api.getNetworkParameter('flow_control_10g')
-        return element_if_equal([bool(int(e)) for e in fc])
-
-    @flowcontrol_10g.setter
-    @error_handling
-    def flowcontrol_10g(self, value):
-        if value is True:
-            v = '1'
-        else:
-            v = '0'
-        self._api.setNetworkParameter('flow_control_10g', v, -1)
-
-    @error_handling
-    def pulse_all_pixels(self, n):
-        """
-        Pulse each pixel of the chip **n** times using the analog test pulses.
-        The pulse height is set using d.dacs.vcall with 4000 being 0 and 0 being
-        the highest pulse.
-        
-        ::
-            
-            #Pulse all pixels ten times
-            d.pulse_all_pixels(10)
-            
-            #Avoid resetting before acq
-            d.eiger_matrix_reset = False
-            
-            d.acq() #take frame
-            
-            #Restore normal behaviour
-            d.eiger_matrix_reset = True
-        
-        
-        """
-        self._api.pulseAllPixels(n)
-        
-    @error_handling
-    def pulse_diagonal(self, n):
-        """
-        Pulse pixels in super colums in a diagonal fashion. Used for calibration
-        of vcall. Saves time compared to pulsing all pixels.
-        """
-        self._api.pulseDiagonal(n)
-
-    @error_handling
-    def pulse_chip(self, n):
-        """
-        Advance the counter by toggling enable. Gives 2*n+2 int the counter
-        
-        """
-        n = int(n)
-        if n >= -1:
-            self._api.pulseChip(n)
-        else:
-            raise ValueError('n must be equal or larger than -1')
-
-    @property
-    def vcmp(self):
-        """
-        Convenience function to get and set the individual vcmp of chips
-        Used mainly in the calibration code.
-
-        Examples
-        ---------
-
-        ::
-
-            #Reading
-            d.vcmp[:]
-            >> [500, 500, 500, 500, 500, 500, 500, 500]
-
-            #Setting
-            d.vcmp = [500, 500, 500, 500, 500, 500, 500, 500]
-
-
-        """
-
-        return self._vcmp
-    
-    @vcmp.setter
-    @error_handling
-    def vcmp(self, values):
-        if len(values) == len(self._vcmp.set):
-            for i, v in enumerate(values):
-                self._vcmp.set[i](v)
-        else:
-            raise ValueError('vcmp only compatible with setting all')
-
-    @property
-    @error_handling
-    def rx_udpport(self):
-        """
-        UDP port for the receiver. Each module has two ports referred to
-        as rx_udpport and rx_udpport2 in the command line interface
-        here they are grouped for each detector
-        
-        ::
-            
-            [0:rx_udpport, 0:rx_udpport2, 1:rx_udpport ...]
-        
-        Examples
-        -----------
-        
-        ::
-        
-            d.rx_udpport
-            >> [50010, 50011, 50004, 50005]
-            
-            d.rx_udpport = [50010, 50011, 50012, 50013]
-        
-        """
-        p0 = self._api.getReceiverUDPPort()
-        p1 = self._api.getReceiverUDPPort2()
-        return [int(val) for pair in zip(p0, p1) for val in pair]
-    
-    @rx_udpport.setter
-    @error_handling
-    def rx_udpport(self, ports):
-        """Requires iterating over elements two and two for setting ports"""
-        a = iter(ports)
-        for i, p in enumerate(zip(a, a)):
-            self._api.setReceiverUDPPort(p[0], i)
-            self._api.setReceiverUDPPort2(p[1], i)
-
-    @property
-    @error_handling
-    def rx_zmqport(self):
-        """
-        Return the receiver zmq ports. Note that Eiger has two ports per receiver!
-
-        ::
-
-            detector.rx_zmqport
-            >> [30001, 30002, 30003, 30004]
-
-
-        """
-        _s = self._api.getReceiverStreamingPort()
-        if _s == '':
-            return []
-        else:
-            return [int(_p) + i for _p in _s for i in range(2)]
-
-    @rx_zmqport.setter
-    @error_handling
-    def rx_zmqport(self, port):
-        if isinstance(port, Iterable):
-            for i, p in enumerate(port):
-                self._api.setReceiverStreamingPort(p, i)
-        else:
-            self._api.setReceiverStreamingPort(port, -1)
-
-
-    @property
-    @error_handling
-    def sub_exposure_time(self):
-        """
-        Sub frame exposure time in *seconds* for Eiger in 32bit autosumming mode
-
-        ::
-
-            d.sub_exposure_time
-            >> 0.0023
-
-            d.sub_exposure_time = 0.002
-
-        """
-        return self._api.getSubExposureTime() / 1e9
-
-    
-    @sub_exposure_time.setter
-    @error_handling
-    def sub_exposure_time(self, t):
-        #TODO! checking here or in the detector?
-        ns_time = int(t * 1e9)
-        if ns_time > 0:
-            self._api.setSubExposureTime(ns_time)
-        else:
-            raise DetectorValueError('Sub exposure time must be larger than 0')
-
-    @property
-    @error_handling
-    def sub_deadtime(self):
-        """
-        Deadtime between subexposures. Used to mimize noise by delaying the start of the next
-        subexposure.
-        """
-        return self._api.getSubExposureDeadTime() / 1e9
-
-    
-    @sub_deadtime.setter
-    @error_handling
-    def sub_deadtime(self, t):
-        ns_time = int(t * 1e9)
-        if ns_time >= 0:
-            self._api.setSubExposureDeadTime(ns_time)
-        else:
-            raise ValueError('Sub deadtime time must be larger or equal to 0')
-
-    @property
-    def temp(self):
-        """
-        An instance of DetectorAdcs used to read the temperature
-        of different components
-
-        Examples
-        -----------
-
-        ::
-
-            detector.temp
-            >>
-            temp_fpga     :  36.90°C,  45.60°C
-            temp_fpgaext  :  31.50°C,  32.50°C
-            temp_10ge     :   0.00°C,   0.00°C
-            temp_dcdc     :  36.00°C,  36.00°C
-            temp_sodl     :  33.00°C,  34.50°C
-            temp_sodr     :  33.50°C,  34.00°C
-            temp_fpgafl   :  33.81°C,  30.93°C
-            temp_fpgafr   :  27.88°C,  29.15°C
-
-            a = detector.temp.fpga[:]
-            a
-            >> [36.568, 45.542]
-
-
-        """
-        return self._temp
-
-    @property
-    @error_handling
-    def tengiga(self):
-        """Enable 10Gbit/s data output
-        
-        Examples
-        ----------
-        
-        ::
-            
-            d.tengiga
-            >> False
-            
-            d.tengiga = True
-            
-        """
-        return self._api.getTenGigabitEthernet()
-    
-    @tengiga.setter
-    @error_handling
-    def tengiga(self, value):
-        self._api.setTenGigabitEthernet(value)
-
-    def set_delays(self, delta):
-        self.tx_delay.left = [delta*(i*2) for i in range(self.n_modules)]
-        self.tx_delay.right = [delta*(i*2+1) for i in range(self.n_modules)]
-
-
-    def setup500k(self, hostnames):
-        """
-        Setup the Eiger detector to run on the local machine
-        """
-        
-        self.hostname = hostnames
-        self.file_write = False
-        self.image_size = (512, 1024)
-        self.rx_tcpport = [1954, 1955]
-        self.rx_udpport = [50010, 50011, 50004, 50005]
-        self.rx_hostname = socket.gethostname().split('.')[0]
-        self.rx_datastream = False
-        self.file_write = False
-        self.online = True
-        self.receiver_online = True

python/sls_detector/errors.py

@@ -1,25 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Created on Thu Dec 14 17:13:55 2017
-
-@author: l_frojdh
-"""
-
-
-class DetectorError(Exception):
-    """
-    This error should be used when something fails
-    on the detector side
-    """
-    pass
-
-
-class DetectorSettingDoesNotExist(Exception):
-    """This error should be used when the setting does not exist"""
-    pass
-
-
-class DetectorValueError(Exception):
-    """This error should be used when the set value is outside the allowed range"""
-    pass

python/sls_detector/experimental.py

@@ -1,16 +0,0 @@
-
-from _sls_detector import multiDetectorApi
-
-class ExperimentalDetector(multiDetectorApi):
-    def __init__(self):
-        super().__init__(0)
-
-
-    @property
-    def rx_udpip(self):
-        return self._getReceiverUDPIP(-1)
-
-    @rx_udpip.setter
-    def rx_udpip(self, ip):
-        self._setReceiverUDPIP(ip, -1)
-    

python/sls_detector/jungfrau.py

@@ -1,275 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-"""
-Jungfrau detector class and support functions.
-Inherits from Detector.
-"""
-from .adcs import Adc, DetectorAdcs
-from .decorators import error_handling
-from .detector import Detector
-from .dacs import DetectorDacs
-from .utils import element_if_equal
-
-
-class JungfrauDacs(DetectorDacs):
-    _dacs = [('vb_comp',    0, 4000,    1220),
-             ('vdd_prot',   0, 4000,    3000),
-             ('vin_com',    0, 4000,    1053),
-             ('vref_prech', 0, 4000,    1450),
-             ('vb_pixbuff', 0, 4000,     750),
-             ('vb_ds',      0, 4000,    1000),
-             ('vref_ds',    0, 4000,     480),
-             ('vref_comp',  0, 4000,     420),
-            ]
-    _dacnames = [_d[0] for _d in _dacs]
-
-class Jungfrau(Detector):
-    """
-    Class used to control a Jungfrau detector. Inherits from the Detector class but a specialized
-    class is needed to provide the correct dacs and unique functions.
-
-    """
-    _detector_dynamic_range = [4, 8, 16, 32]
-
-    _settings = ['dynamichg0',
-                 'dynamicgain',
-                 'fixgain1',
-                 'fixgain2',
-                 'forceswitchg1',
-                 'forceswitchg2']
-    """Available settings for Jungfrau"""
-
-    def __init__(self, multi_id=0):
-        #Init on base calss
-        super().__init__(multi_id)
-        self._dacs = JungfrauDacs(self)
-
-        #Jungfrau specific temps, this can be reduced to a single value?
-        self._temp = DetectorAdcs()
-        self._temp.fpga = Adc('temp_fpga', self)
-        # self._register = Register(self)
-
-
-    @property
-    def dacs(self):
-        """
-
-        An instance of DetectorDacs used for accessing the dacs of a single
-        or multi detector.
-
-        Examples
-        ---------
-
-        ::
-
-            #Jungfrau
-
-
-        """
-        return self._dacs
-
-    @property
-    @error_handling
-    def power_chip(self):
-        """Power on or off the ASICs, True for on False for off"""
-        return self._api.isChipPowered()
-
-    @power_chip.setter
-    @error_handling
-    def power_chip(self, value):
-        self._api.powerChip(value)
-
-    @property
-    @error_handling
-    def delay(self):
-        """Delay after trigger [s]"""
-        return self._api.getDelay()/1e9
-
-    @delay.setter
-    @error_handling
-    def delay(self, t):
-        ns_time = int(t * 1e9)
-        self._api.setDelay(ns_time)
-
-    @property
-    @error_handling
-    def n_gates(self):
-        return self._api.getNumberOfGates()
-
-    @n_gates.setter
-    @error_handling
-    def n_gates(self, n):
-        self._api.setNumberOfGates(n)
-
-    @property
-    @error_handling
-    def n_probes(self):
-        return self._api.getNumberOfProbes()
-
-    @n_probes.setter
-    @error_handling
-    def n_probes(self, n):
-        self._api.setNumberOfProbes(n)
-
-    @property
-    @error_handling
-    def storagecell_start(self):
-        """
-        First storage cell
-        """
-        return self._api.getStoragecellStart()
-
-    @storagecell_start.setter
-    @error_handling
-    def storagecell_start(self, value):
-        self._api.setStoragecellStart(value)
-
-
-    @property
-    @error_handling
-    def n_storagecells(self):
-        """
-        number of storage cells used for the measurements
-        """
-        return self._api.getNumberOfStorageCells()
-
-    @n_storagecells.setter
-    @error_handling
-    def n_storagecells(self, value):
-        self._api.setNumberOfStorageCells(value)
-
-    @property
-    def temp(self):
-        """
-        An instance of DetectorAdcs used to read the temperature
-        of different components
-
-        Examples
-        -----------
-
-        ::
-
-            detector.temp
-            >>
-            temp_fpga     :  36.90°C,  45.60°C
-
-            a = detector.temp.fpga[:]
-            a
-            >> [36.568, 45.542]
-
-
-        """
-        return self._temp
-
-    @property
-    def temperature_threshold(self):
-        """Threshold for switching of chips"""
-        return self._api.getThresholdTemperature()
-
-    @temperature_threshold.setter
-    def temperature_threshold(self, t):
-        self._api.setThresholdTemperature(t)
-
-    @property
-    def temperature_control(self):
-        """
-        Monitor the temperature of the detector and switch off chips if temperature_threshold is
-        crossed
-
-
-        Examples
-        ---------
-
-        ::
-
-            #activate
-            detector.temperature_control = True
-
-            #deactivate
-            detector.temperature_control = False
-
-
-        """
-        return self._api.getTemperatureControl()
-
-    @temperature_control.setter
-    def temperature_control(self, v):
-        self._api.setTemperatureControl(v)
-
-    @property
-    def temperature_event(self):
-        """Have the temperature threshold been crossed?
-
-        Returns
-        ---------
-
-            :py:obj:`True` if the threshold have been crossed and temperature_control is active
-            otherwise :py:obj:`False`
-
-        """
-        return self._api.getTemperatureEvent()
-
-    def reset_temperature_event(self):
-        """Reset the temperature_event. After reset temperature_event is False"""
-        self._api.resetTemperatureEvent()
-
-    @property
-    @error_handling
-    def rx_udpport(self):
-        """
-        UDP port for the receiver. Each module have one port.
-        Note! Eiger has two ports
-
-        ::
-
-            [0:rx_udpport]
-
-        Examples
-        -----------
-
-        ::
-
-            d.rx_udpport
-            >> [50010]
-
-            d.rx_udpport = [50010]
-
-        """
-        return self._api.getNetworkParameter('rx_udpport')
-
-
-    @rx_udpport.setter
-    @error_handling
-    def rx_udpport(self, ports):
-        """Requires iterating over elements two and two for setting ports"""
-        for i, p in enumerate(ports):
-            self._api.setNetworkParameter('rx_udpport', str(p), i)
-
-    @property
-    def detector_mac(self):
-        s = self._api.getNetworkParameter('detectormac')
-        return element_if_equal(s)
-
-
-    @detector_mac.setter
-    def detector_mac(self, mac):
-        if isinstance(mac, list):
-            for i, m in enumerate(mac):
-                self._api.setNetworkParameter('detectormac', m, i)
-        else:
-            self._api.setNetworkParameter('detectormac', mac, -1)
-
-
-    @property
-    @error_handling
-    def detector_ip(self):
-        s = self._api.getNetworkParameter('detectorip')
-        return element_if_equal(s)
-
-    @detector_ip.setter
-    def detector_ip(self, ip):
-        if isinstance(ip, list):
-            for i, addr in enumerate(ip):
-                self._api.setNetworkParameter('detectorip', addr, i)
-        else:
-            self._api.setNetworkParameter('detectorip', ip, -1)

python/sls_detector/jungfrau_ctb.py

@@ -1,181 +0,0 @@
-from functools import partial
-from collections.abc import Iterable
-from collections import namedtuple
-import socket
-
-from .detector import Detector
-from .utils import element_if_equal
-from .adcs import DetectorAdcs, Adc
-from .dacs import DetectorDacs
-from .detector_property import DetectorProperty
-from .decorators import error_handling
-from .registers import Register, Adc_register
-
-class JungfrauCTBDacs(DetectorDacs):
-    _dacs = [('dac0',  0, 4000,    1400),
-             ('dac1',  0, 4000,    1200),
-             ('dac2',  0, 4000,    900),
-             ('dac3',  0, 4000,    1050),
-             ('dac4',  0, 4000,     1400),
-             ('dac5',  0, 4000,    655),
-             ('dac6',  0, 4000,    2000),
-             ('dac7',  0, 4000,     1400),
-             ('dac8',  0, 4000,    850),
-             ('dac9',  0, 4000,    2000),
-             ('dac10', 0, 4000,    2294),
-             ('dac11', 0, 4000,    983),
-             ('dac12', 0, 4000,    1475),
-             ('dac13', 0, 4000,    1200),
-             ('dac14', 0, 4000,    1600),
-             ('dac15', 0, 4000,    1455),
-             ('dac16', 0, 4000,       0),
-             ('dac17', 0, 4000,    1000),
-            ]
-    _dacnames = [_d[0] for _d in _dacs]
-
-
-
-class JungfrauCTB(Detector):
-    def __init__(self, id = 0):
-        super().__init__(id)
-        self._dacs = JungfrauCTBDacs(self)
-        self._register = Register(self)
-        self._adc_register = Adc_register(self)
-
-    @property
-    def v_a(self):
-        return self._api.getDac_mV('v_a', -1)
-
-    @v_a.setter
-    def v_a(self, value):
-        self._api.setDac_mV('v_a', -1, value)
-
-    @property
-    def v_b(self):
-        return self._api.getDac_mV('v_b', -1)
-
-    @v_b.setter
-    def v_b(self, value):
-        self._api.setDac_mV('v_b', -1, value)
-
-
-    @property
-    def v_c(self):
-        return self._api.getDac_mV('v_c', -1)
-
-    @v_c.setter
-    def v_c(self, value):
-        self._api.setDac_mV('v_c', -1, value)
-
-    @property
-    def v_d(self):
-        return self._api.getDac_mV('v_d', -1)
-
-    @v_d.setter
-    def v_d(self, value):
-        self._api.setDac_mV('v_d', -1, value)
-        
-    @property
-    def v_io(self):
-        return self._api.getDac_mV('v_io', -1)
-
-    @v_io.setter
-    def v_io(self, value):
-        self._api.setDac_mV('v_io', -1, value)        
-
-    @property
-    def v_limit(self):
-        return self._api.getDac_mV('v_limit', -1)
-
-    @v_limit.setter
-    def v_limit(self, value):
-        self._api.setDac_mV('v_limit', -1, value)
-        
-    @property
-    def adc_register(self):
-        return self._adc_register
-
-    # @property
-    # def register(self):
-    #     return self._register
-
-    def adcOFF(self):
-        """Switch off the ADC"""
-        self.adc_register[0x8] = 1
-
-
-
-    @property
-    def dacs(self):
-        """
-
-        An instance of DetectorDacs used for accessing the dacs of a single
-        or multi detector.
-
-        Examples
-        ---------
-
-        ::
-
-            #JungfrauCTB
-
-
-        """
-        return self._dacs
-
-    @property
-    def dbitpipeline(self):
-        return self._api.getDbitPipeline()
-
-    @dbitpipeline.setter
-    def dbitpipeline(self, value):
-        self._api.setDbitPipeline(value)
-
-
-    @property
-    def dbitphase(self):
-        return self._api.getDbitPhase()
-
-    @dbitphase.setter
-    def dbitphase(self, value):
-        self._api.setDbitPhase(value)
-
-    @property
-    def dbitclock(self):
-        return self._api.getDbitClock()
-
-    @dbitclock.setter
-    def dbitclock(self, value):
-        self._api.setDbitClock(value)
-
-    @property
-    def samples(self):
-        return self._api.getJCTBSamples()
-
-    @samples.setter
-    def samples(self, value):
-        self._api.setJCTBSamples(value)
-
-    @property
-    @error_handling
-    def readout_clock(self):
-        """
-        Speed of the readout clock relative to the full speed
-
-
-        Examples
-        ---------
-
-        ::
-
-
-
-
-        """
-        return  self._api.getReadoutClockSpeed()
-
-
-    @readout_clock.setter
-    @error_handling
-    def readout_clock(self, value):
-        self._api.setReadoutClockSpeed(value)

python/sls_detector/registers.py

@@ -1,18 +0,0 @@
-from .decorators import error_handling, property_error_handling
-class Register:
-    def __init__(self, detector):
-        self._detector = detector
-
-    @property_error_handling
-    def __getitem__(self, key):
-        return self._detector._api.readRegister(key)
-
-    def __setitem__(self, key, value):
-        self._detector._api.writeRegister(key, value)
-
-class Adc_register:
-    def __init__(self, detector):
-        self._detector = detector
-
-    def __setitem__(self, key, value):
-        self._detector._api.writeAdcRegister(key, value)

python/sls_detector/utils.py

@@ -1,32 +0,0 @@
-"""
-Utility functions that are useful for testing and troubleshooting
-but not directly used in controlling the detector
-"""
-
-
-def all_equal(mylist):
-    """If all elements are equal return true otherwise false"""
-    return all(x == mylist[0] for x in mylist)
-
-
-def element_if_equal(mylist):
-    """If all elements are equal return only one element"""
-    if all_equal(mylist):
-        if len(mylist) == 0:
-            return None
-        else:
-            return mylist[0]
-    else:
-        return mylist
-
-
-def eiger_register_to_time(register):
-    """
-    Decode register value and return time in s. Values are stored in
-    a 32bit register with bits 2->0 containing the exponent and bits
-    31->3 containing the significand (int value)
-
-    """
-    clocks = register >> 3
-    exponent = register & 0b111
-    return clocks*10**exponent / 100e6

python/sphinx/Makefile

@@ -1,20 +0,0 @@
-# Minimal makefile for Sphinx documentation
-#
-
-# You can set these variables from the command line.
-SPHINXOPTS    =
-SPHINXBUILD   = python -msphinx
-SPHINXPROJ    = sls_detector_tools
-SOURCEDIR     = .
-BUILDDIR      = _build
-
-# Put it first so that "make" without argument is like "make help".
-help:
-	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
-
-.PHONY: help Makefile
-
-# Catch-all target: route all unknown targets to Sphinx using the new
-# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
-%: Makefile
-	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

python/sphinx/code_quality.rst

@@ -1,134 +0,0 @@
-Code quality
-=============================
-
-For usability and reliability of the software the code needs to be high quality. For this
-project it means meeting the four criteria described below. Any addition should pass all of 
-them. 
-
-
---------------------------------
-Look, read and feel like Python
---------------------------------
-
-When using classes and functions from the 
-package it should feel like you are using Python tools and be forces
-to write C++ style code with Python syntax.
-
-::
-	
-    with xray_box.shutter_open():
-        for th in threshold:
-            d.vthreshold = th
-            d.acq()
-
-should be preferred over
-
-::
-
-    N = len(threshold)
-    xray_box.open_shutter()
-    for i in range(N):
-        d.dacs.set_dac('vthreshold', threshold[i])
-        d.acq()
-    xray_box.close_shutter()
-    
-even if the difference might seem small.
-
---------------------
-Have documentation
---------------------
-
-Classes and functions should be documented with doc-strings
-in the source code. Preferably with examples. The syntax to be used
-is numpy-sphinx.
-
-::
-
-    def function(arg):
-        """
-        This is a function that does something
-        
-        Parameters
-        ----------
-        arg: int
-            An argument
-            
-        Returns
-        --------
-        value: double
-            Returns a value
-            
-        """
-        return np.sin(arg+np.pi)
-
----------------------------------
-Pass static analysis with pylint
----------------------------------
-
-Yes, anything less than 9/10 just means that you are lazy. If 
-there is a good reason why to diverge, then we can always 
-add an exception.
-
-Currently the following additions are made:
-
- * good-names: x, y, ax, im etc. 
- * function arguments 10
- * Whitelist: numpy, _sls
-
-
-
------------------------
-Tested code
------------------------
-
-Last but not least... *actually last just because of the long list included.*
-All code that goes in should have adequate tests. If a new function does not
-have a minimum of one test it does not get added.
- 
-**Unit-tests with pytest and mocker**
-
-::
-
-    ----------- coverage: platform linux, python 3.6.4-final-0 -----------
-    Name                         Stmts   Miss  Cover
-    ------------------------------------------------
-    sls_detector/__init__.py         4      0   100%
-    sls_detector/decorators.py      14      3    79%
-    sls_detector/detector.py       461    115    75%
-    sls_detector/eiger.py          150     64    57%
-    sls_detector/errors.py           7      0   100%
-    sls_detector/jungfrau.py        59     26    56%
-    ------------------------------------------------
-    TOTAL                          695    208    70%
-
-
-    ========= 78 passed in 0.60 seconds =========
-
-
-    
-**Simple integration tests**
-
-These tests require a detector connected. Performs simple tasks like setting 
-exposure time and reading back to double check the value
-
-::
-
-    ----------- coverage: platform linux, python 3.6.4-final-0 -----------
-    Name                         Stmts   Miss  Cover
-    ------------------------------------------------
-    sls_detector/__init__.py         4      0   100%
-    sls_detector/decorators.py      14      0   100%
-    sls_detector/detector.py       461    103    78%
-    sls_detector/eiger.py          150     20    87%
-    sls_detector/errors.py           7      0   100%
-    sls_detector/jungfrau.py        59     26    56%
-    ------------------------------------------------
-    TOTAL                          695    149    79%
-
-
-    ========= 67 passed, 1 skipped in 16.66 seconds =========
-
-**Complex integration test**
-
-Typical measurements. Might require X-rays. Tests are usually evaluated from 
-plots

python/sphinx/command_line.rst

@@ -1,370 +0,0 @@
-Command line to Python
-=========================
-
-If you are already familiar with the command line interface to the
-slsDetectorSoftware here is a quick reference translating to Python commands
-
-
- .. note ::
-
-     Commands labeled Mythen only  or Gotthard only are currently not implemented in the
-     Python class. If you need this functionallity please contact the SLS Detector Group
-
-.. py:currentmodule:: sls_detector
-
-.. |ro| replace:: *(read only)*
-.. |free| replace:: :py:func:`Detector.free_shared_memory`
-.. |sub| replace:: :py:attr:`Detector.sub_exposure_time`
-.. |mg| replace:: Mythen and Gotthard only
-.. |g| replace:: Gotthard only
-.. |m| replace:: Mythen only
-.. |msp| replace:: :py:attr:`Detector.measured_subperiod`
-.. |new_chiptest| replace:: New chip test board only
-.. |chiptest| replace:: Chip test board only
-.. |dr| replace::  :py:attr:`Detector.dynamic_range`
-.. |j| replace:: Jungfrau only
-.. |te| replace:: :py:attr:`Detector.trimmed_energies`
-.. |temp_fpgaext| replace:: :py:attr:`Detector.temp`.fpgaext
-.. |epa| replace:: :py:func:`Eiger.pulse_all_pixels`
-.. |rfc| replace:: :py:func:`Detector.reset_frames_caught`
-.. |rfi| replace:: :py:attr:`Detector.receiver_frame_index`
-.. |ron| replace:: :py:attr:`Detector.receiver_online`
-.. |flipy| replace:: :py:attr:`Detector.flipped_data_y`
-.. |flipx| replace:: :py:attr:`Detector.flipped_data_x`
-.. |adcr| replace:: :py:func:`DetectorApi.writeAdcRegister`
-.. |sb| replace:: :py:func:`DetectorApi.setBitInRegister`
-.. |cb| replace:: :py:func:`DetectorApi.clearBitInRegister`
-.. |tempth| replace:: :py:attr:`Jungfrau.temperature_threshold`
-.. |tempev| replace:: :py:attr:`Jungfrau.temperature_event`
-.. |tempco| replace:: :py:attr:`Jungfrau.temperature_control`
-.. |depr| replace:: *Deprecated/Internal*
-.. |nimp| replace:: *Not implemented*
-.. |rudp| replace:: :py:attr:`Detector.rx_realudpsocksize`
-.. |lci| replace:: :py:attr:`Detector.last_client_ip`
-.. |rlci| replace:: :py:attr:`Detector.receiver_last_client_ip`
-.. |fdp| replace:: :py:attr:`Detector.frame_discard_policy`
-.. |apic| replace:: :py:attr:`Detector.api_compatibility`
-
-
-------------------------
-Commands
-------------------------
-
-===================== ===================================== ================== =========
-Command               Python                                Implementation     Tests
-===================== ===================================== ================== =========
-sls_detector_acquire  :py:func:`Detector.acq`                OK                 OK
-test                  |depr|                                 \-                 \-
-help                  help(Detector.acq)                     \-                 \-
-exitserver            |depr|                                 \-                 \-
-exitreceiver          |depr|                                 \-                 \-
-flippeddatay          |flipy|                                OK                 \-
-digitest              |depr|                                 \-                 \-
-bustest               |depr|                                 \-                 \-
-digibittest           Which detector?                        \-                 \-
-reg                   :py:attr:`Detector.register`           OK                 \-
-adcreg                |adcr|                                 OK                 \-
-setbit                |sb|                                   OK                 \-
-clearbit              |cb|                                   OK                 \-
-getbit                |nimp|                                 \-                 \-
-r_compression         Not implemented in receiver            \-                 \-
-acquire               :py:func:`Detector.acq`                OK                 \-
-busy                  :py:attr:`Detector.busy`               OK                 Partial
-status                :py:attr:`Detector.status`             OK |ro|            \-
-status start          :py:func:`Detector.start_detector`     OK                 \-
-status stop           :py:func:`Detector.stop_detector`      OK                 \-
-data                  |depr|                                 \-                 \-
-frame                 |depr|                                 \-                 \-
-readctr               |g|                                    \-                 \-
-resetctr              |g|                                    \-                 \-
-resmat                :py:attr:`Eiger.eiger_matrix_reset`    OK                 OK
-free                  |free|                                 OK                 \-
-hostname              :py:attr:`Detector.hostname`           OK                 OK
-add                   |nimp|                                 \-                 \-
-replace               |nimp|                                 \-                 \-
-user                  |nimp|                                 \-                 \-
-master                |nimp|                                 \-                 \-
-sync                  Which detector?                        \-                 \-
-online                :py:attr:`Detector.online`             OK                 \-
-checkonline           |nimp|                                 \-                 \-
-activate              :py:attr:`Eiger.active`                \-                 \-
-nmod                  :py:attr:`Detector.n_modules`          OK                 \-
-maxmod                |depr|                                 \-                 \-
-dr                    |dr|                                   OK                 OK
-roi                   |g|                                    \-                 \-
-detsizechan           :py:attr:`Detector.image_size`         OK                 \-
-roimask               |nimp|                                 \-                 \-
-flippeddatax          |flipx|                                OK                 \-
-tengiga               :py:attr:`Eiger.tengiga`               OK                 \-
-gappixels             :py:attr:`Eiger.add_gappixels`         OK                 \-
-flags                 :py:attr:`Detector.flags`              OK                 \-
-extsig                |mg|                                   \-                 \-
-programfpga           |j|                                    \-                 \-
-resetfpga             |j|                                    \-                 \-
-powerchip             :py:attr:`Jungfrau.powerchip`          \-                 \-
-led                   |nimp|                                 \-                 \-
-auto_comp_disable     |j|                                    \-                 \-
-pulse                 Used in |epa|                          OK                 \-
-pulsenmove            Used in |epa|                          OK                 \- 
-pulsechip             :py:func:`Eiger.pulse_chip`            OK                 \-
-checkdetversion       |apic|                                 \-                 \-
-checkrecversion       |apic|                                 \-                 \-
-moduleversion         |m|                                    \-                 \-
-detectornumber        :py:attr:`Detector.detector_number`    OK                 \-
-modulenumber          |m|                                    \-                 \-
-detectorversion       :py:attr:`Detector.firmware_version`   OK                 OK
-softwareversion       :py:attr:`Detector.server_version`     \-                 \-
-thisversion           :py:attr:`Detector.client_version`     Reads date         \-
-receiverversion       :py:attr:`Detector.receiver_version`   Reads date         \-
-timing                :py:attr:`Detector.timing_mode`        OK                 \-
-exptime               :py:attr:`Detector.exposure_time`      OK                 OK
-subexptime            |sub|                                  OK                 OK
-period                :py:attr:`Detector.period`             OK                 OK
-subdeadtime           :py:attr:`Eiger.sub_deadtime`          OK                 OK
-delay                 :py:attr:`Jungfrau.delay`              OK                 \-
-gates                 :py:attr:`Jungfrau.n_gates`            OK                 \-
-frames                :py:attr:`Detector.n_frames`           OK                 OK
-cycles                :py:attr:`Detector.n_cycles`           OK                 \-
-probes                :py:attr:`Jungfrau.n_probes`           OK                 \-
-measurements          :py:attr:`Detector.n_measurements`     OK                 \-
-samples               Chip test board only (new?)            \-                 \-
-storagecells          :py:attr:`Jungfrau.n_storagecells`     OK                 \-
-storagecell_start     :py:attr:`Jungfrau.storagecell_start`  OK                 \-
-exptimel              |mg|                                   \-                 \-
-periodl               |mg|                                   \-                 \-
-delayl                |mg|                                   \-                 \-
-gatesl                |mg|                                   \-                 \-
-framesl               |mg|                                   \-                 \-
-cyclesl               |mg|                                   \-                 \-
-probesl               |mg|                                   \-                 \-
-now                   |nimp|                                 \-                 \-
-timestamp             |m|                                    \-                 \-
-nframes               |nimp|                                 \-                 \-
-measuredperiod        :py:attr:`Detector.measured_period`    OK                 \-
-measuredsubperiod     |msp|                                  \-                 \-
-clkdivider            :py:attr:`Detector.readout_clock`      OK                 OK
-setlength             |m|                                    \-                 \-
-waitstates            |m|                                    \-                 \-
-totdivider            |m|                                    \-                 \-
-totdutycycle          |m|                                    \-                 \-
-phasestep             |g|                                    \-                 \-
-oversampling          |new_chiptest|                         \-                 \-
-adcclk                |new_chiptest|                         \-                 \-
-adcphase              |new_chiptest|                         \-                 \-
-adcpipeline           |new_chiptest|                         \-                 \-
-dbitclk               |new_chiptest|                         \-                 \-
-dbitphase             |new_chiptest|                         \-                 \-
-dbitpipeline          |new_chiptest|                         \-                 \-
-config                :py:func:`Detector.load_config`        OK                 \-
-rx_printconfig        |nimp|                                 \-                 \-
-parameters            :py:func:`Detector.load_parameters`    OK                 \-
-setup                 |nimp|                                 \-                 \-
-flatfield             |nimp|                                 \-                 \-
-ffdir                 |nimp|                                 \-                 \-
-ratecorr              :py:attr:`Detector.rate_correction`    OK                 \-
-badchannels           |nimp|                                 \-                 \-
-angconv               |m|                                    \-                 \-
-globaloff             |nimp|                                 \-                 \-
-fineoff               |nimp|                                 \-                 \-
-binsize               |nimp|                                 \-                 \-
-angdir                |nimp|                                 \-                 \-
-moveflag              |nimp|                                 \-                 \-
-samplex               |nimp|                                 \-                 \-
-sampley               |nimp|                                 \-                 \-
-threaded              :py:attr:`Detector.threaded`           OK                 \-
-darkimage             |nimp|                                 \-                 \-
-gainimage             |nimp|                                 \-                 \-
-settingsdir           :py:attr:`Detector.settings_path`      OK                 \-
-trimdir               |nimp|                                 \-                 \-
-caldir                |nimp|                                 \-                 \-
-trimen                :py:attr:`Detector.trimmed_energies`   OK                 \-
-settings              :py:attr:`Detector.settings`           OK                 \-
-threshold             :py:attr:`Detector.threshold`          OK                 \-
-thresholdnotb         |nimp|                                 \-                 \-
-trimbits              :py:func:`Detector.load_trimbits`      OK                 \-
-trim                  |nimp|                                 \-                 \-
-trimval               :py:attr:`Detector.trimbits`           OK                 OK
-pedestal              |nimp|                                 \-                 \-
-vthreshold            :py:attr:`Detector.vthreshold`         OK                 \-
-vcalibration          |nimp|                                 \-                 \-
-vtrimbit              |nimp|                                 \-                 \-
-vpreamp               |nimp|                                 \-                 \-
-vshaper1              |nimp|                                 \-                 \-
-vshaper2              |nimp|                                 \-                 \-
-vhighvoltage          :py:attr:`Detector.high_voltage`       OK                 \-
-vapower               |nimp|                                 \-                 \-
-vddpower              |nimp|                                 \-                 \-
-vshpower              |nimp|                                 \-                 \-
-viopower              |nimp|                                 \-                 \-
-vref_ds               :py:attr:`Jungfrau.dacs.vref_ds`       OK                 \-
-vcascn_pb             |nimp|                                 \-                 \-
-vcascp_pb             |nimp|                                 \-                 \-
-vout_cm               |nimp|                                 \-                 \-
-vcasc_out             |nimp|                                 \-                 \-
-vin_cm                |nimp|                                 \-                 \-
-vref_comp             |nimp|                                 \-                 \-
-ib_test_c             |nimp|                                 \-                 \-
-dac0                  |nimp|                                 \-                 \-
-dac1                  |nimp|                                 \-                 \-
-dac2                  |nimp|                                 \-                 \-
-dac3                  |nimp|                                 \-                 \-
-dac4                  |nimp|                                 \-                 \-
-dac5                  |nimp|                                 \-                 \-
-dac6                  |nimp|                                 \-                 \-
-dac7                  |nimp|                                 \-                 \-
-vsvp                  :py:attr:`Eiger.dacs.vsvp`             OK                 \-
-vsvn                  :py:attr:`Eiger.dacs.vsvn`             OK                 \- 
-vtr                   :py:attr:`Eiger.dacs.vtr`              OK                 \-
-vrf                   :py:attr:`Eiger.dacs.vrf`              OK                 \-
-vrs                   :py:attr:`Eiger.dacs.vrs`              OK                 \-
-vtgstv                :py:attr:`Eiger.dacs.vtgstv`           OK                 \-
-vcmp_ll               :py:attr:`Eiger.dacs.vcmp_ll`          OK                 \-
-vcmp_ll               :py:attr:`Eiger.dacs.vcmp_ll`          OK                 \-
-vcall                 :py:attr:`Eiger.dacs.vcall`            OK                 \-
-vcmp_rl               :py:attr:`Eiger.dacs.vcmp_rl`          OK                 \-
-vcmp_rr               :py:attr:`Eiger.dacs.vcmp_rr`          OK                 \-
-rxb_rb                :py:attr:`Eiger.dacs.rxb_rb`           OK                 \-
-rxb_lb                :py:attr:`Eiger.dacs.rxb_lb`           OK                 \-
-vcp                   :py:attr:`Eiger.dacs.vcp`              OK                 \-
-vcn                   :py:attr:`Eiger.dacs.vcn`              OK                 \-
-vis                   :py:attr:`Eiger.dacs.vis`              OK                 \-
-iodelay               :py:attr:`Eiger.dacs.iodelay`          OK                 \-
-dac                   |nimp|                                 \-                 \-
-adcvpp                |nimp|                                 \-                 \-
-v_a                   |nimp|                                 \-                 \-
-v_b                   |nimp|                                 \-                 \- 
-v_c                   |nimp|                                 \-                 \-  
-v_d                   |nimp|                                 \-                 \- 
-v_io                  |nimp|                                 \-                 \- 
-v_chip                |nimp|                                 \-                 \- 
-v_limit               |nimp|                                 \-                 \- 
-vIpre                 |nimp|                                 \-                 \- 
-VcdSh                 |nimp|                                 \-                 \- 
-Vth1                  |nimp|                                 \-                 \- 
-Vth2                  |nimp|                                 \-                 \- 
-Vth3                  |nimp|                                 \-                 \- 
-VPL                   |nimp|                                 \-                 \- 
-Vtrim                 |nimp|                                 \-                 \- 
-vIbias                |nimp|                                 \-                 \- 
-vIinSh                |nimp|                                 \-                 \- 
-cas                   |nimp|                                 \-                 \- 
-casSh                 |nimp|                                 \-                 \- 
-vIbiasSh              |nimp|                                 \-                 \- 
-vIcin                 |nimp|                                 \-                 \- 
-vIpreOut              |nimp|                                 \-                 \- 
-temp_adc              |nimp|                                 \-                 \- 
-temp_fpga             :py:attr:`Detector.temp`.fpga          OK                 \- 
-temp_fpgaext          |temp_fpgaext|                         OK                 \- 
-temp_10ge             :py:attr:`Detector.temp`.t10ge         OK                 \- 
-temp_dcdc             :py:attr:`Detector.temp`.dcdc          OK                 \- 
-temp_sodl             :py:attr:`Detector.temp`.sodl          OK                 \- 
-temp_sodr             :py:attr:`Detector.temp`.sodr          OK                 \- 
-adc                   |nimp|                                 \-                 \- 
-temp_fpgafl           :py:attr:`Detector.temp`.fpgafl        OK                 \- 
-temp_fpgafr           :py:attr:`Detector.temp`.fpgafr        OK                 \- 
-i_a                   |nimp|                                 \-                 \-        
-i_b                   |nimp|                                 \-                 \-        
-i_c                   |nimp|                                 \-                 \-        
-i_d                   |nimp|                                 \-                 \-        
-i_io                  |nimp|                                 \-                 \-        
-vm_a                  |nimp|                                 \-                 \-        
-vm_b                  |nimp|                                 \-                 \-        
-vm_c                  |nimp|                                 \-                 \-        
-vm_d                  |nimp|                                 \-                 \-        
-vm_io                 |nimp|                                 \-                 \-        
-temp_threshold        |tempth|                               \-                 \-                        
-temp_control          |tempco|                               \-                 \-  
-temp_event            |tempev|                               \-                 \-  
-outdir                :py:attr:`Detector.file_path`          OK                 OK
-fname                 :py:attr:`Detector.file_name`          OK                 OK
-index                 :py:attr:`Detector.file_index`         OK                 OK
-enablefwrite          :py:attr:`Detector.file_write`         OK                 OK
-overwrite             :py:attr:`Detector.file_overwrite`     OK                 \-
-currentfname          |nimp|                                 \-                 \-      
-fileformat            :py:attr:`Detector.file_format`        OK                 \-
-positions             |depr|                                 \-                 \-
-startscript           |depr|                                 \-                 \-
-startscriptpar        |depr|                                 \-                 \-
-stopscript            |depr|                                 \-                 \-
-stopscriptpar         |depr|                                 \-                 \-
-scriptbefore          |depr|                                 \-                 \-
-scriptbeforepar       |depr|                                 \-                 \-
-scriptafter           |depr|                                 \-                 \-
-scriptafterpar        |depr|                                 \-                 \-
-headerafter           |depr|                                 \-                 \-
-headerbefore          |depr|                                 \-                 \-
-headerbeforepar       |depr|                                 \-                 \-
-headerafterpar        |depr|                                 \-                 \-
-encallog              |depr|                                 \-                 \-
-angcallog             |depr|                                 \-                 \-
-scan0script           |depr|                                 \-                 \-
-scan0par              |depr|                                 \-                 \-
-scan0prec             |depr|                                 \-                 \-
-scan0steps            |depr|                                 \-                 \-
-scan0range            |depr|                                 \-                 \-
-scan1script           |depr|                                 \-                 \-
-scan1par              |depr|                                 \-                 \-
-scan1prec             |depr|                                 \-                 \-
-scan1steps            |depr|                                 \-                 \-
-scan1range            |depr|                                 \-                 \-
-rx_hostname           :py:attr:`Detector.rx_hostname`        OK                 \-
-rx_udpip              :py:attr:`Detector.rx_udpip`           OK                 \-
-rx_udpmac             :py:attr:`Detector.rx_udpmac`          OK                 \-
-rx_udpport            :py:attr:`Detector.rx_udpport`         OK                 \-
-rx_udpport2           :py:attr:`Detector.rx_udpport`         OK                 \-
-rx_udpsocksize        :py:attr:`Detector.rx_udpsocksize`     OK                 \-
-rx_realudpsocksize    |rudp|                                 OK
-detectormac           :py:attr:`Detector.detector_mac`       OK                 \-
-detectorip            :py:attr:`Detector.detector_ip`        OK                 \-
-txndelay_left         :py:attr:`Eiger.delay`.left            OK                 \-
-txndelay_right        :py:attr:`Eiger.delay`.right           OK                 \-
-txndelay_frame        :py:attr:`Eiger.delay`.frame           OK                 \-
-flowcontrol_10g       :py:attr:`Eiger.flowcontrol_10g`       OK                 \-
-zmqport               :py:attr:`Detector.client_zmqport`     Read               \- 
-rx_zmqport            :py:attr:`Detector.rx_zmqport`         Read               \-
-rx_datastream         :py:attr:`Detector.rx_datastream`      OK                 \-
-zmqip                 :py:attr:`Detector.client_zmqip`       OK                 \- 
-rx_zmqip              :py:attr:`Detector.rx_zmqip`           Read               \-
-rx_jsonaddheader      :py:attr:`Detector.rx_jsonaddheader`   OK                 \- 
-configuremac          :py:attr:`Detector.config_network`     OK                 \-
-rx_tcpport            :py:attr:`Detector.rx_tcpport`    
-port                  |nimp|                                 \-                 \- 
-stopport              |nimp|                                 \-                 \- 
-lock                  :py:attr:`Detector.lock`               OK                 \-
-lastclient            :py:attr:`Detector.last_client_ip`     OK                 \-
-receiver start        :py:func:`Detector.start_receiver`     OK                 \-   
-receiver stop         :py:func:`Detector.stop_receiver`      \-                 \-  
-r_online              |ron|                                  OK                 \-
-r_checkonline         |nimp|                                 \-                 \-   
-framescaught          :py:attr:`Detector.frames_caught`      OK                 \-
-resetframescaught     |rfc|                                  OK                 \-
-frameindex            |rfi|                                  OK                 \-
-r_lock                :py:attr:`Detector.lock_receiver`      OK                 \-
-r_lastclient          |rlci|                                 OK                 \-
-r_readfreq            |nimp|                                 \-                 \- 
-rx_fifodepth          :py:attr:`Detector.rx_fifodepth`       OK                 \-
-r_silent              |nimp|                                 \-                 \- 
-r_framesperfile       :py:attr:`Detector.n_frames_per_file`  OK                 \-
-r_discardpolicy       |fdp|                                  OK                 \-
-r_padding             :py:attr:`Detector.file_padding`       OK                 \-
-adcinvert             |chiptest|                             \-                 \-
-adcdisable            |chiptest|                             \-                 \-
-pattern               |chiptest|                             \-                 \-
-patword               |chiptest|                             \-                 \-
-patioctrl             |chiptest|                             \-                 \-
-patclkctrl            |chiptest|                             \-                 \-
-patlimits             |chiptest|                             \-                 \-
-patloop0              |chiptest|                             \-                 \-
-patnloop0             |chiptest|                             \-                 \-
-patwait0              |chiptest|                             \-                 \-
-patwaittime0          |chiptest|                             \-                 \-
-patloop1              |chiptest|                             \-                 \-
-patnloop1             |chiptest|                             \-                 \-
-patwait1              |chiptest|                             \-                 \-
-patwaittime1          |chiptest|                             \-                 \-
-patloop2              |chiptest|                             \-                 \-
-patnloop2             |chiptest|                             \-                 \-
-patwait2              |chiptest|                             \-                 \-
-patwaittime2          |chiptest|                             \-                 \-
-dut_clk               |chiptest|                             \-                 \-
-===================== ===================================== ================== =========   

python/sphinx/conf.py

@@ -1,178 +0,0 @@
-#!/usr/bin/env python3
-# -*- coding: utf-8 -*-
-#
-# sls_detector_tools documentation build configuration file, created by
-# sphinx-quickstart on Wed Nov  1 10:17:29 2017.
-#
-# This file is execfile()d with the current directory set to its
-# containing dir.
-#
-# Note that not all possible configuration values are present in this
-# autogenerated file.
-#
-# All configuration values have a default; values that are commented out
-# serve to show the default.
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-import os
-import sys
-sys.path.insert(0, os.path.abspath('..'))
-
-
-# -- General configuration ------------------------------------------------
-
-# If your documentation needs a minimal Sphinx version, state it here.
-#
-# needs_sphinx = '1.0'
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = ['sphinx.ext.autodoc',
-              'sphinx.ext.doctest',
-              'sphinx.ext.coverage',
-              'sphinx.ext.mathjax',
-              'sphinx.ext.viewcode',
-              'sphinx.ext.napoleon',
-              'sphinx.ext.todo',
-              'sphinx.ext.autosummary']
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# The suffix(es) of source filenames.
-# You can specify multiple suffix as a list of string:
-#
-# source_suffix = ['.rst', '.md']
-source_suffix = '.rst'
-
-# The master toctree document.
-master_doc = 'index'
-
-# General information about the project.
-project = 'sls_detector'
-copyright = '2019, Sls Detector Group'
-author = 'Erik Frojdh'
-
-# The version info for the project you're documenting, acts as replacement for
-# |version| and |release|, also used in various other places throughout the
-# built documents.
-#
-# The short X.Y version.
-version = '4.0.1'
-# The full version, including alpha/beta/rc tags.
-release = '4.0.1'
-
-# The language for content autogenerated by Sphinx. Refer to documentation
-# for a list of supported languages.
-#
-# This is also used if you do content translation via gettext catalogs.
-# Usually you set "language" from the command line for these cases.
-language = None
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This patterns also effect to html_static_path and html_extra_path
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
-
-# The name of the Pygments (syntax highlighting) style to use.
-pygments_style = 'sphinx'
-
-# If true, `todo` and `todoList` produce output, else they produce nothing.
-todo_include_todos = True
-
-
-# -- Options for HTML output ----------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-html_theme = "sphinx_rtd_theme"
-
-# Theme options are theme-specific and customize the look and feel of a theme
-# further.  For a list of options available for each theme, see the
-# documentation.
-#
-# html_theme_options = {}
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['_static']
-
-# Custom sidebar templates, must be a dictionary that maps document names
-# to template names.
-#
-# This is required for the alabaster theme
-# refs: http://alabaster.readthedocs.io/en/latest/installation.html#sidebars
-html_sidebars = {
-    '**': [
-        'about.html',
-        'navigation.html',
-        'relations.html',  # needs 'show_related': True theme option to display
-        'searchbox.html',
-        'donate.html',
-    ]
-}
-
-
-# -- Options for HTMLHelp output ------------------------------------------
-
-# Output file base name for HTML help builder.
-htmlhelp_basename = 'sls_detector_doc'
-napoleon_use_ivar = True
-
-# -- Options for LaTeX output ---------------------------------------------
-
-latex_elements = {
-    # The paper size ('letterpaper' or 'a4paper').
-    #
-    # 'papersize': 'letterpaper',
-
-    # The font size ('10pt', '11pt' or '12pt').
-    #
-    # 'pointsize': '10pt',
-
-    # Additional stuff for the LaTeX preamble.
-    #
-    # 'preamble': '',
-
-    # Latex figure (float) alignment
-    #
-    # 'figure_align': 'htbp',
-}
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title,
-#  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (master_doc, 'sls_detector.tex', 'sls_detector Documentation',
-     'Erik Frojdh', 'manual'),
-]
-
-
-# -- Options for manual page output ---------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [
-    (master_doc, 'sls_detector_tools', 'sls_detector_tools Documentation',
-     [author], 1)
-]
-
-
-# -- Options for Texinfo output -------------------------------------------
-
-# Grouping the document tree into Texinfo files. List of tuples
-# (source start file, target name, title, author,
-#  dir menu entry, description, category)
-texinfo_documents = [
-    (master_doc, 'py_sls', 'py_sls Documentation',
-     author, 'py_sls', 'One line description of project.',
-     'Miscellaneous'),
-]
-
-

python/sphinx/cpp_api.rst

@@ -1,12 +0,0 @@
-C++ API
-=====================================================
-
-
-.. py:currentmodule:: _sls_detector
-
-.. autoclass:: DetectorApi
-    :members:  
-    :undoc-members:
-
-
-

python/sphinx/error-handling.rst

@@ -1,67 +0,0 @@
-Error handling
-=========================
-
-
-Check input in Python
-----------------------
-
-As far as possible we try to check the input on the Python side
-before calling the slsDeteectorsSoftware. Errors should not pass
-silently but raise an exception
-
-::
-
-    #Trimbit range for Eiger is 0-63
-    detector.trimbits = 98
-    (...)
-    ValueError: Trimbit setting 98 is  outside of range:0-63
-    
-Errors in slsDetectorsSoftware
--------------------------------
-
-The slsDetectorsSoftware uses a mask to record errors from the different
-detectors. If an error is found we raise a RuntimeError at the end of the 
-call using the error message from slsDetectorsSoftware
-
-.. todo ::
-
-    Implement this for all functions
-
-::
-
-    detector.settings = 'bananas'
-    (...)
-    RuntimeError: Detector 0:
-    Could not set settings.
-    Detector 1:
-    Could not set settings.
-    Detector 2:
-    Could not set settings.
-    
-    
-Using decorators
--------------------
-
-Using decorators we can reset the error mask before the command and then 
-check it after the command
-
-.. code-block:: python
-
-    #add decorator to check the error mask
-    @error_handling
-    def some_function():
-        a = 1+1
-        return a
-
-Communication with the detector is usually the biggest overhead so 
-this does not impact performance. 
-
-::
-
-    %timeit d.exposure_time
-    >> 1.52 ms ± 5.42 µs per loop (mean ± std. dev. of 7 runs, 1000 loops each)
-
-    %timeit d.decorated_exposure_time
-    >> 1.53 ms ± 3.18 µs per loop (mean ± std. dev. of 7 runs, 1000 loops each)
-
-

python/sphinx/examples.rst

@@ -1,143 +0,0 @@
-Examples
-================
-
-Some short hints on how to use the detector
-
-------------------------
-Simple threshold scan
-------------------------
-
-Assuming you have set up your detector with exposure time, period, enabled
-file writing etc.
-
-.. code-block:: python
- 
-    from sls_detector import Eiger
-
-    d = Eiger()
-    threshold = range(0, 2000, 200)
-    for th in threshold:
-        d.vthreshold = th
-        d.acq()
-    
-
-If we want to control the shutter of for example, the big X-ray box we can add
-this line in our code. It then opens the shutter just before the measurement
-and closes is afterwards.
-    
-::
-
-    with xrf_shutter_open(box, 'Fe'):
-        for th in threshold:
-            d.vthreshold = th
-            d.acq()
-        
-        
------------------------
-Reading temperatures
------------------------       
-
-::
-
-    d.temp
-    >>
-    temp_fpga     :  43.19°C,  51.83°C
-    temp_fpgaext  :  38.50°C,  38.50°C
-    temp_10ge     :  39.50°C,  39.50°C
-    temp_dcdc     :  42.50°C,  42.50°C
-    temp_sodl     :  39.50°C,  40.50°C
-    temp_sodr     :  39.50°C,  40.50°C
-    temp_fpgafl   :  40.87°C,  37.61°C
-    temp_fpgafr   :  34.51°C,  35.63°C
-    
-    d.temp.fpga
-    >> temp_fpga     :  40.84°C,  39.31°C
-    
-    t = d.temp.fpga[0]
-    t
-    >> 40.551
-    
-    t = d.temp.fpga[:]
-    t
-    >> [40.566, 39.128]
-
-
------------------------
-Non blocking acquire
------------------------
-
-There are mainly two ways to achieve a non blocking acquire when calling from the Python API. One is to manually start
-the detector and the second one is to launch the normal acquire from a different process. Depending on your measurement
-it might also be better to run the other task in a seperate process and use acq in the main thread.
-But lets start looking at the at the manual way:
-
-::
-
-    import time
-    from sls_detector import Eiger
-    d = Eiger()
-
-    n = 10
-    t = 1
-
-    d.exposure_time = t
-    d.n_frames = n
-    d.reset_frames_caught()
-
-    #Start the measurement
-    t0 = time.time()
-    d.start_receiver()
-    d.start_detector()
-
-    #Wait for the detector to be ready or do other important stuff
-    time.sleep(t*n)
-
-    #check if the detector is ready otherwise wait a bit longer
-    while d.status != 'idle':
-        time.sleep(0.1)
-
-    #Stop the receiver after we got the frames
-    #Detector is already idle so we don't need to stop it
-    d.stop_receiver()
-
-    lost = d.frames_caught - n
-    print(f'{n} frames of {t}s took {time.time()-t0:{.3}}s with {lost} frames lost ')
-
-    #Reset to not interfere with a potential next measurement
-    d.reset_frames_caught()
-
-Instead launching d.acq() from a different process is a bit easier since the control of receiver and detector
-is handled in the acq call. However, you need to join the process used otherwise a lot of zombie processes would
-hang around until the main process exits.
-
-::
-
-    import time
-    from multiprocessing import Process
-    from sls_detector import Eiger
-
-    def acquire():
-        """
-        Create a new Eiger object that still referes to the same actual detector
-        and same shared memory. Then launch acq.
-        """
-        detector = Eiger()
-        detector.acq()
-
-    #This is the detector we use throughout the session
-    d = Eiger()
-
-    #Process to run acquire
-    p = Process(target=acquire)
-
-    #Start the thread and short sleep to allow the acq to start
-    p.start()
-    time.sleep(0.01)
-
-    #Do some other work
-    while d.busy is True:
-        print(d.busy)
-        time.sleep(0.1)
-
-    #Join the process
-    p.join()

python/sphinx/getting_started.rst

@@ -1,122 +0,0 @@
-Getting started
-================
-
-
-------------------------
-Setting up the detector
-------------------------
-        
-All configuration of the detector can either be done from the Python
-API (including loading config file) or externally. The detector setup is
-discovered from the shared memory when launching a new script. Because the
-detector usually should remain online longer than a specific script it is
-recommended to run the receivers seperate.
-        
----------------------------------
-Setting and getting attributes
----------------------------------        
-
-Most of the detector and software setting are implemented as attributes
-in the Detector class. When something is assigned it is also set 
-in the detector and when the attribute is called using dot notation it
-it looked up from the detector.
-
-::
-
-    #Currently Eiger and Jungfrau but Detector should work for all
-    from sls_detector import Eiger()
-    d = Eiger()
-    
-    d.file_write = True
-    d.vthreshold = 1500
-    
-    d.frame_index
-    >> 12
-    
-    d.file_name
-    >> 'run'
-    
----------------------------------
-Working with DACs
----------------------------------  
-
-The following examples assumes an Eiger500k detector. But the same syntax
-works for other detector sizes and models.
-
-::
-
-    d.dacs
-    >>
-    ========== DACS =========
-    vsvp      :     0,     0
-    vtr       :  4000,  4000
-    vrf       :  2000,  2300
-    vrs       :  1400,  1400
-    vsvn      :  4000,  4000
-    vtgstv    :  2556,  2556
-    vcmp_ll   :  1500,  1500
-    vcmp_lr   :  1500,  1500
-    vcall     :  3500,  3600
-    vcmp_rl   :  1500,  1500
-    rxb_rb    :  1100,  1100
-    rxb_lb    :  1100,  1100
-    vcmp_rr   :  1500,  1500
-    vcp       :  1500,  1500
-    vcn       :  2000,  2000
-    vis       :  1550,  1550
-    iodelay   :   660,   660
-    
-    #Read dac values to a variable
-    vrf = d.dacs.vrf[:]
-    
-    #Set a dac in a module
-    d.dacs.vrf[0] = 1500
-    d.dacs.vrf[0]
-    >> 1500
-    
-    #Set vrf to the same value in all moduels
-    d.dacs.vrf = 1500
-    
-    #Set a dac using an iterable
-    d.dacs.vrf = [1500, 1600]
-    d.dacs.vrf
-    >> vrf       :  1500,  1600
-    
-    #Set dacs iterating on index and values
-    d.dacs.vrf[0,1] = 1300,1400
-
-
----------------------------------
-Operating multiple detectors
----------------------------------
-
-Operating multiple detectors is supported by assigning an id when creating the object. If no id is
-set it defaults to 0.
-
-::
-
-    d0 = Eiger() #id is now 0
-    d1 = Jungfrau(1)
-
-    #Or explicitly
-    d1 = Jungfrau(id = 0)
-
-The detectors now operate independently of each other but can be synchronized using a hardware trigger.
-
-::
-
-    from sls_detector import Eiger
-
-    d0 = Eiger(0)
-    d1 = Eiger(1)
-
-    d0.load_config('/some/path/T45.config')
-    d1.load_config('/some/path/T62.config')
-
-    d0.n_frames = 1
-    d0.exposure_time = 1
-    d0.timing_mode = 'trigger'
-
-    d1.n_frames = 5
-    d1.exposure_time = 0.2
-    d1.timing_mode = 'trigger'

python/sphinx/index.rst

@@ -1,30 +0,0 @@
-sls_detector - Python interface for the slsDetectorsPackage
-==============================================================
-
-sls_detector provide Python bindings to the slsDetectorsPackage using mainly the 
-multiSlsDetector API. This module contains two parts, a compiled C module to
-expose the API and a Python class to offer a more Pythonic interface.
-
-
-.. toctree::
-   :maxdepth: 3
-   :caption: Contents:
-
-   installation
-   getting_started
-   code_quality
-   command_line
-   examples
-   error-handling
-   
-   sls_detector
-   cpp_api
-
-
-
-Indices and tables
-==================
-
-* :ref:`genindex`
-* :ref:`modindex`
-* :ref:`search`