Merge branch 'main-rc' into b3.0.1

.travis.yml

@@ -1,45 +0,0 @@
-sudo: false
-
-language: cpp
-
-matrix:
-  include:
-    - os: linux
-      env: CONDA_PY=3.6
-
-dist: trusty
-
-install:
-  - sudo apt-get update
-  - ldd --version
-  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
-  - bash miniconda.sh -b -p $HOME/miniconda
-  - export PATH="$HOME/miniconda/bin:$PATH"
-  - rm -f miniconda.sh
-  - hash -r
-  - conda config --set always_yes yes --set changeps1 no
-  - conda config --add channels conda-forge
-  - conda config --add channels slsdetectorgroup
-  - conda update conda
-  - conda update --all
-  - conda install conda-build anaconda-client
-
-  # Useful for debugging any issues with conda
-  - conda info -a
-
-
-  # Replace dep1 dep2 ... with your dependencies
-  - conda create -q -n test-environment python=$CONDA_PY
-  - source activate test-environment
-  - conda-build .
-
-script:
- - echo "No test scripts to be run!"
-
-
-deploy:
-  provider: script
-  script: find $HOME/miniconda/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -t $CONDA_TOKEN upload --force {} \;
-  on:
-    branch: developer
-

CMakeLists.txt

@@ -1,5 +1,5 @@
 cmake_minimum_required(VERSION 2.8)
-set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake")
 set (CALIBRATE OFF)
 
 option (USE_HDF5 "HDF5 File format" OFF)
@@ -7,18 +7,13 @@ option (USE_TEXTCLIENT "Text Client" OFF)
 option (USE_RECEIVER "Receiver" OFF)
 option (USE_GUI "GUI" OFF)
 
-
+set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wall -Wno-misleading-indentation")
-if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 6.0)
-	set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wall -std=c++98 -Wno-misleading-indentation")
-else ()
-	set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -std=c++98")
-endif ()
 
 find_package(Qt4)
 find_package(Qwt 6)
 find_package(CBF)
 find_package(Doxygen)
-# find_package(PNG REQUIRED)
+find_package(PNG REQUIRED)
 
 if (USE_HDF5)
 	find_package(HDF5 1.10 COMPONENTS CXX)
@@ -36,10 +31,8 @@ endif (USE_TEXTCLIENT)
 
 if (USE_RECEIVER)
        add_subdirectory(slsReceiverSoftware)
-       add_subdirectory(manual/manual-api)    
 endif (USE_RECEIVER)
                
-               
 if (USE_GUI)   
        if (QT4_FOUND AND QWT_FOUND)
        add_subdirectory(slsDetectorGui)

Makefile

@@ -19,12 +19,11 @@ RECEIVERDIR		=	$(LIBRARYRXRDIR)
 CALWIZDIR		=	$(WD)/calibrationWizards
 MANDIR			=	$(WD)/manual
 CALIBDIR		=	$(WD)/slsDetectorCalibration
-MANAPIDIR		=	$(MANDIR)/manual-api
 
 TABSPACE		:=	"\t"
 
  
-INCLUDES=-I. -I$(LIBRARYDIR)/commonFiles -I$(LIBRARYDIR)/slsDetector -I$(LIBRARYDIR)/usersFunctions -I$(LIBRARYDIR)/multiSlsDetector -I$(LIBRARYDIR)/slsDetectorUtils -I$(LIBRARYDIR)/slsDetectorCommand -I$(LIBRARYDIR)/slsDetectorAnalysis -I$(LIBRARYDIR)/slsReceiverInterface  -I$(LIBRARYRXRDIR)/include -I$(LIBRARYDIR)/threadFiles -I$(LIBRARYDIR)/sharedMemory -I$(ASM)
+INCLUDES=-I. -I$(LIBRARYDIR)/commonFiles -I$(LIBRARYDIR)/slsDetector -I$(LIBRARYDIR)/usersFunctions -I$(LIBRARYDIR)/multiSlsDetector -I$(LIBRARYDIR)/slsDetectorUtils -I$(LIBRARYDIR)/slsDetectorCommand -I$(LIBRARYDIR)/slsDetectorAnalysis -I$(LIBRARYDIR)/slsReceiverInterface  -I$(LIBRARYRXRDIR)/include -I$(LIBRARYDIR)/threadFiles -I$(ASM)
 
 INCLUDESRXR += -I. -I$(LIBRARYRXRDIR)/include -I$(CALIBDIR) -I$(ASM) 
 #LIBFLAGRXR += 
@@ -80,7 +79,6 @@ slsReceiver_static: receiver
 receiver: #libreceiver
 #	cd  $(RECEIVERDIR) && $(MAKE) receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
 	cd  $(RECEIVERDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	cd  $(MANAPIDIR) && $(MAKE) slsMultiReceiver
 	@echo ""
 	@echo "#######################################"
 	@echo "# Back in slsDetectorPackage Makefile #"
@@ -153,7 +151,6 @@ clean:
 	cd $(DOCDIR) && rm -rf * 
 	rm -rf 	slsDetectorPackageDocs;
 	rm -rf $(DETAILDOC)
-	rm -rf $(MANAPIDIR)/slsMultiReceiver
 
 
 #install_lib: 

README.md

@@ -1,13 +1,10 @@
-### Documentation
-Detailed documentation can be found on the [official site.](https://www.psi.ch/detectors/users-support)
-
 ### Binaries
-Documentation to obtain the binaries via the conda package is available for [lib](https://github.com/slsdetectorgroup/sls_detector_lib) and [gui](https://github.com/slsdetectorgroup/sls_detector_gui)
+Documentation to obtain the binaries via the conda package is available [here.](https://github.com/slsdetectorgroup/sls_detector_software)
 
 ### Source code
 One can also obtain the source code from this repository and compile while realizing the setup dependencies as required.
 ```
-git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git
+git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 3.0.1
 
 ```
 #### Setup dependencies 
@@ -19,7 +16,7 @@ Requirements: Qt 4.8 and Qwt 6.0
 ```
 If either of them does not exist, the GUI client will not be built.
 
-* Advanced user Calibration wizards<br>
+* Calibration wizards<br>
 Requirements: ROOT
 ```
     export ROOTSYS=/usr/local/root-5.34
@@ -43,10 +40,6 @@ Usage: [-c] [-b] [-h] [-d HDF5 directory] [-j]<br>
  * -r: Build/Rebuilds only receiver<br>
  * -g: Build/Rebuilds only gui<br>
  * -j: Number of threads to compile through<br>
- * -e: Debug mode
- 
-Basic Option:
-./cmk.sh -b
  
 For only make:
 ./cmk.sh
@@ -87,5 +80,5 @@ After compiling, the libraries and executables will be found at `bin` directory
 ```
     $ ls bin/
     gui_client  libSlsDetector.a  libSlsDetector.so  libSlsReceiver.a  libSlsReceiver.so
-    sls_detector_acquire  sls_detector_get  slsDetectorGui  sls_detector_help  sls_detector_put  slsReceiver slsMultiReceiver
+    sls_detector_acquire  sls_detector_get  slsDetectorGui  sls_detector_help  sls_detector_put  slsReceiver
 ```

RELEASE.txt

@@ -1,508 +1,350 @@
-SLS Detector Package 4.0.0 released on 27.09.2018
+SLS Detector Package 3.0.1 released on 2018-02-12
 =================================================
 
 
 
 INTRODUCTION
 
-	This document describes the differences between 4.0.0 and 3.1.4 releases.
+This document describes the differences between 3.0.0 and 3.0.1 release.
 
-	Download
+The conda package of the binaries can be downloaded from
-	--------
 	
-	The Source Code (Default C++ API):
+	https://github.com/erikfrojdh/sls_detector_software.git
-		 https://github.com/slsdetectorgroup/slsDetectorPackage
-		 
-	The Conda Lib Package:
-		https://github.com/slsdetectorgroup/sls_detector_lib
-		
-	The Conda GUI Package:
-		https://github.com/slsdetectorgroup/sls_detector_gui	
-		
-	The Python Interface (including the package):
-    	https://github.com/slsdetectorgroup/sls_detector
 	
+The conda package of the python API wrap-around to the software package is at 
 	
-	Documentation
+	https://github.com/slsdetectorgroup/sls_detector.git
-	-------------
 	
-	Manual (HTML & PDF):
+Manual (both HTML and pdf versions) are provided in
-		https://www.psi.ch/detectors/documentation
+	
-		slsDetectorPackage/manual/docs/
+	manual/docs/
-		
+
-	Command Line Documentation:
+Documentation from Source Code can be found for the Command Line and C++ API in
+	
+	html:
 		manual/docs/html/slsDetectorClientDocs/index.html
-		manual/docs/pdf/slsDetectorClientDocs.pdf
-		
-	C++ API Documentation:
 		manual/docs/html/slsDetectorUsersDocs/index.html
+	pdf:
+		manual/docs/pdf/slsDetectorClientDocs.pdf
 		manual/docs/pdf/slsDetectorUsersDocs.pdf
 		
-	C++ API Example:
+Documentation to the python API is available at
-		manual/manual-api/mainClient.cpp
+
-		manual/manual-api/mainReceiver.cpp
+	https://slsdetectorgroup.github.io/sls_detector/
-		
-	Python API Documentation:
-		https://slsdetectorgroup.github.io/sls_detector/
-		
-	Further Documentation:
-		https://www.psi.ch/detectors/users-support
 		
+Example including binaries for detector and receiver user classes can be found in 
+
+	manual/manual-api
 	
-	Support
+User documentation can also be accessed directly at this location:
-	-------
 
-	General Software related:
+    https://www.psi.ch/detectors/users-support
-		dhanya.thattil@psi.ch
-		anna.bergamaschi@psi.ch
-		
-	Python related:
-		erik.frojdh@psi.ch
 
+If you have any software related questions or comments, please send them to:
+
+    dhanya.thattil@psi.ch
+    anna.bergamaschi@psi.ch
+    
+If you have any python related questions or comments, please send them to:
+	
+	erik.frojdh@psi.ch
 
 
 CONTENTS
 
-	1.	Firmware Requirements
+- Firmware Requirements
-	2.	Changes in User Interface
+- Changes in User Interface
-	3.	New/Modified Commands
+- New Features
-	4.	Other New Features
+- Resolved Issues
-	5.	Resolved Issues
+- Known Issues
-	6.	Known Issues
-	7.	Next Major Release Plans
 
 
 
-1. Firmware Requirements
+Firmware Requirements
-========================
-
-    	Gotthard
-    	========   
-    	Minimum compatible version  : 11.01.2013
-    	Latest version              : 08.02.2018 (50um and 25um Master)
-                                      09.02.2018 (25 um Slave) 
-    	Eiger
-    	=====  
-    	Minimum compatible version  : 22
-    	Latest version              : 22
-        
-    	Jungfrau
-    	========       
-    	Minimum compatible version  : 15.06.2018
-    	Latest version              : 15.06.2018
-
-    	
-    	Detector Upgrade
-    	================
-    	Gotthard	Cannot be upgraded remotely. Requires programming via USB blaster
-    	Eiger		Can be upgraded remotely via bit files
-    	Jungfrau	Can be upgraded remotely using sls_detector_put programfpga <pof>
-    	
-    	Instructions available at
-    	https://www.psi.ch/detectors/installation-instructions
-    	under Detector Upgrade -> [Detector Type] -> Firmware. 
-    	
-    	 
-	Please refer to the link below for more details on the firmware versions.
-	https://www.psi.ch/detectors/firmware.
-		
-
-
-2. Changes in User Interface
-============================
-	
-	Client
-	------
-	
-	1.	Shared Memory:
-	
-		POSIX shared memory has been implemented and they are typically created in
-		/dev/shm/ folder.
-		
-		A multiSlsDetector object will create a shared memory segment with naming style:
-		slsDetectorPackage_x_[_z]
-		and an slsDetector object will create a shared memory segment with naming style:
-		slsDetectorPackage_x_sls_y[_z]
-		 	
-		where
-		x is the multi detector id
-		y is the sls detector id
-		z is the environment variable SLSDETNAME, if set.
-		They can be deleted directly.
-		
-		Environment variable SLSDETNAME included for user-friendliness
-		of using 2 different detectors from the same client pc. One needn't use
-		different multi detector id if the SLSDETNAME is different for both consoles.
-		
-		Constructor will fail if shared memory size is different (different package
-		releases/detectors). Loading config file cleans shared memory.
-
-
-	2.	Exceptions in constructors:
-	
-		All constructors that have an error throws an exception. For this release,
-		this is caught within the package and interfaced as error codes or messages
-		to the users using command line or API.
-		
-		As a result:
-		- slsDetectorsUsers constructor signature now includes a success flag.
-		- If one uses multiSlsDetector, slsDetector, ZmqSocket classes directly, 
-		  catch exceptions from constructors.
-		- In future releases, the exception will be thrown 
-		  outside the package for the users to handle it.
-		  
-		  
-	3.	API Compatibility:
-	
-		Client now checks API version of Detector Server - Client and Receiver - Client
-		when connecting for the first time to detector server or receiver server
-		and the online flags have not been set in shm. 
-		
-		Upon failure, error messages will ensue and further commands will not 
-		be executed. Detector servers referred to are only for Eiger, Jungfrau and Gotthard.
-		
-		Previously, the detector server would exit on mismatched Firmware-Detector
-		server mismatch. They now wait for client to ask for compatibility check,
-		which is done the first time client connects to the detector and the
-		online flag in shm has not been set.
-		
-		
-	4.	Commands "type", "id" and "replace" are removed.
-		  
-		  
-	Receiver
-	--------
-	
-	1.	Reciever Header Structure in file writing and call back:
-	
-		sls_receiver_header structure added to sls_receiver_defs.h for image headers 
-		in file writing. 
-		
-		#define MAX_NUM_PACKETS	512
-		typedef std::bitset<MAX_NUM_PACKETS> sls_bitset;
-		typedef struct {
-			sls_detector_header detHeader;	/**< is the detector header */
-			sls_bitset packetsMask;			/**< is the packets caught bit mask */
-		} sls_receiver_header;
-		
-		It includes the detector header structure + bitmask of 512 bits, 
-		where each bit represents a packet caught. This is useful in saving time 
-		in writing to file by not padding missing packets and still retaining useful data.
-		
-		The binary and HDF5 writer version number changed from 1.0 to 2.0. 
-		The detector header version remains as 1.0.
-		
-		registerCallBackRawDataReady modified to give this structure pointer,
-		instead of individual structure member pointers.
-		
-		
-	2.	ZmqSocket class:
-	
-		If one uses ZmqSocket.h, then the json header has to be parsed outside 
-		the class to allow the user to remove the restriction in extracting all data
-		from the json header.
-
-
-	3.	Receiver Call back with modified size:
-	
-		registerCallBackRawDataModifyReady call back that is similar to the receiver 
-		registerCallBackRawDataReady has been added to allow the call back to 
-		specify an updated size of image after call back. This is in view to process
-		an image in call back (including extract only a region of the image) and 
-		provide this updated size in callback. This new resized/processed image
-		will be written to file or streamed out via zmq. This is useful in ROI
-		selection in the receiver.
-
-		This also means that the call back is now called before writing to file.
-
-
-
-3. New/Modified Commands 
-========================
-	
-	Client
-	------
-
-	1.	add (modified): 
-		appends detector to end of multi detector list.
-
-	2.	replace: 
-		sets hostname/ip address for a single detector.
-
-	3.	user: 
-		get user details from shared memory.
-
-	4.	checkdetversion: 
-		checks client version compatibility with detector server.
-
-	5.	checkrecversion: 
-		checks client version compatibility with receiver server.
-		
-	
-	Receiver
-	--------
-	
-	1.	rx_zmqip:	
-		sets/gets the zmq (TCP) ip of the receiver from where data is streamed 
-		out from. (Eg. to the gui or intermediate process). By default, it is 
-		the same as the zmqip.
-	
-	2.	zmqip: 
-		sets/gets the zmq (TCP) ip, where client listens to, to reconstuct images. 
-		(Eg. from receiver or intermediate process). By default, it is the same 
-		as rx_zmqip.
-	  		 	
-	3.	rx_jsonaddheader:
-		sets/gets additional json header to be streamed out with the zmq from 
-		receiver. Default is empty. Eg. p rx_jsonaddheader \"what\":\"nothing\"
-		
-	4.	r_discardpolicy:
-		sets/gets the frame discard policy in the receiver. 
-		nodiscard - no discard (default), 
-		discardempty - discard only empty frames, 
-		discardpartial - discard any partial frame(fastest)
-		
-	5.	r_padding:
-		sets/gets the frame padding in the receiver. 
-		0 does not pad partial frames(fastest), 
-		1 (default) pads partial frames.
-		One can look at bitmask in the sls_receiver_header to process the unpadded
-		partial	frames later.
-		
-	6.	activate (modified):
-		Extra option added to pad or unpad images in receivers when deactivated.
-		activate i [padding option], where i is activate/deactivate	and padding 
-		option is "padding" (default) or "nopadding".
-		
-	7.	rx_udpsocksize:
-		sets/gets the UDP socket buffer size. Already attempts to set by default 
-		to 100mb, 2gb for Jungfrau. Does not remember custom values	in client 
-		shared memory, so must be initialized each time after setting receiver 
-		hostname in config file.
-		
-	8.	rx_realudpsocksize:
-		gets the actual UDP socket buffer size. Usually double the set udp socket 
-		buffer size due to kernel bookkeeping.
-	
-	9.	r_framesperfile:
-		sets/gets the frames per file in receiver. 0 means infinite or all frames 
-		in a single file. Default of Eiger changed from 2k to 10k.
-		
-
-	Eiger Specific
-	--------------
-	
-	1.	status trigger:
-		To trigger internally via software, one can use "status trigger".
-		
-	2.	subdeadtime:
-		sets/gets sub frame dead time in s in 32 bit mode. Subperiod is	set in 
-		the detector by subexptime + subdeadtime. This value is	normally a 
-		constant set by an expert catered to individual detector modules in the 
-		config file. Receiver files writes master file metadata subperiod 
-		instead of subdeadtime.
-		
-	3.	gappixels:
-		enables/disables gap pixels in system (detector & receiver). 1 sets, 
-		0 unsets. In Receiver, 4 bit gap pixels mode is not implemented, but is 
-		implemented in client data call back. Gap pixels are at module level 
-		and not at multi module level.
-				
-	4.	measuredperiod:
-		gets the measured frame period (time between last frame and the	previous 
-		one) in s. Makes sense only for acquisitions of more than 1 frame.
-		
-	5.	measuredsubperiod:
-		gets the measured subframe period (time between last subframe and the 
-		previous one) in s in 32 bit mode.
-
-	6.	flags(modified):
-		extra flags "nooverflow" (default) and "overflow" for sub images in	32 
-		bit mode. If set to overflow, it will set MSB of pixel data high if 
-		there was any saturation in any of the sub images 32 bit mode.
-		
-				
-	Jungfrau Specific
-	-----------------
-	
-	1.	storagecells:
-		sets/gets number of additional storage cells per acquisition. For very 
-		advanced users only. Range: 0-15. Default: 0. 
-		The #images = #frames * #cycles * (#storagecells +1).
-		
-	2.	storage_start:
-		sets/gets the storage cell that stores the first acquisition of the	series. 
-		For very advanced users only. Range: 0-15. Default: 15(0xf).  
-
-
-
-4. Other New Features
 =====================
 
+Please refer to the link below for more details on the firmware versions.
+	https://www.psi.ch/detectors/firmware.
+
+	Gotthard
+	========   
+    Minimum compatible version	: old one
+    Latest version				: 08.02.2018 (50um and 25um Master)
+        						  09.02.2018 (25 um Slave) 
+
+   	-Can not be upgraded remotely.
+    
+    
+    Eiger
+	=====  
+    Minimum compatible version	: 16
+    Latest version				: 21
+        
+    -Can be upgraded remotely via bit files.
+    
+        
+    Jungfrau
+    ========       
+    Minimum compatible version	: 13.11.2017
+    Latest version				: 13.11.2017
+
+    -Can be upgraded remotely via sls_detector_put programfpga <pof>.
+	 
+
+
+Changes in User Interface
+========================= 
+	
+	
 	Client
 	------
-	
+	1.	Additional functions added for advanced users in users class:
-	1.	(Jungfrau & Gotthard) Settingsdir and caldir is removed from config file.
+		(setSpeed, setClockDivider, setReadOutFlags, setDac, getADC, 
-		Default dacs are stored in detector server. Hence, these folders
+		setAllTrimbits, startReceiver, stopReceiver,
-		are also removed from slsDetectorPackage/settingsdir. Eiger and Mythen 
+		startAcquisition non blocking, setReceiverSilentMode, setHighVoltage,
-		continue to have them.
+		enableDataStreamingToClient, enableDataStreamingFromReceiver, 
+		setReceiverDataStreamingOutPort, setClientDataStreamingInPort)
+			
+	2.	Zmq set up for client and receiver are separated.
+		zmqport for client and rx_zmqport for receiver. By default, they are the
+		same for the slsDetectorGui to work.
 		
-	2.	Depending on 1d position of detectors and detsizechan in config file,
+	3. 	Users example also works without config file, where detector already
-		row and column (previously xcoord and ycoord) are given to detector 
+		configured in shared memory.
-		servers (Eiger and Jungfrau) to encode into the udp header.
 		
-	3.	(Eiger) Setting threshold energy changes such as CAL dac is irrelevant 
+	4. 	Use "sls_detector_get busy 0" to clear acquiring flag in shared memory
-		when interpolating between two energies and VRS dac is interpolated, not copied.
+		caused due to an earlier interrupted acquisition from Ctrl+C"
 		
-	4.	Users API updated with the following functions:
+	5. 	Set bit, clear bit, read register and write register cannot give -1 for
-		-	setReceiverFramesDiscardPolicy
+		inconsistent values from multiple detectors. One has to check error from 
-		-	setReceiverPartialFramesPadding
+		API or read the values individually.
-		-	setReceiverFramesPerFile
-		-	sendSoftwareTrigger
-		-	setSubFrameExposureDeadTime
-		-	setSubFrameExposureTime
-		-	enableGapPixels
-		-	getMeasuredPeriod
-		-	getMeasuredSubFramePeriod
-		-	setOverflowMode
-		-	setNumberOfStorageCells
-		-	setStoragecellStart
-		-	setThresholdEnergy (overloaded)
-		-	resetFramesCaughtInReceiver
-		-	setReceiverFifoDepth
-		-	setFlowControl10G
-		-	setTenGigabitEthernet
-		-	getNMods
-		-	setReceiverDataStreamingOutIP
-		-	setClientDataStreamingInIP
 		
-	SlsReceiver
+	6. 	multiSlsDetector::char* getSettingsFile() function signature has been 
-	-----------
+		changed to string getSettingsFile().
-	
+
-	1.	slsMultiReceiver executable added that creates multiple receiver child processes.
-		./slsMultiReceiver [start_tcp_port] [num_receivers] [1 for call back, 0 for none]
 		
-	2.	Default row and column (previously xcoord and ycoord) are hardcoded 
+		
-		for missing packets. (Eiger and Jungfrau)
+	Receiver
+	--------
+	7.	Modified the help manaual/main-api/mainReceiver.cpp to make it more
+		robust (handling child process exit) and flexible to determine upon 
+		start up the number of receivers (child processes), the start TCP port 
+		and whether to call back data.
+		
+		detReceiver is now executed with [start tcp port] [number of receivers]
+		[1 for call back, 0 for none] as arguments. 
+		By default, start tcp port is 1954, number of receivers	is 1, and call
+		back is initiated.
+		
+	8.	rx_datastream to enable/disable data streaming in receiver. Using the GUI
+		or registering data call back in client automatically enables zmq in 
+		receiver and client. "externalgui" is removed from the command line. Use
+		this command instead.
+		
+	9.	Rx_tcpport argument to the slsReceiver can be given using -t. 
+		Eg. slsReceiver -t1955
 		
 
+New Features
+============
+
+
+	Package
+	-------
+	1.	In addition to the C++ API, the Python API is also now provided.
+	
+	2. 	CMAKE now with debug flag and rpath, show warnings, compile only certain 
+		components (such as receiver or gui)
+	
+	3. 	One repository for entire package and made available at github.
+	
+	4. 	One can do --version or -v to all the binaries to find out the release
+		version of the particular executable.
+		
+	5. 	All the software version numbers have only date in format YYMMDD.
+	
+	  
+   	Client
+	------
+	6. 	Parallelized more commands to detector. Beneficial for large detectors.
+		(setTimer, setFileIndex, setOnline, setReceiverOnline, getReceiverStatus,
+		resetFramesCaught, setFrameIndex, setFileName, getFramesCaughtByReceiver,
+		setDynamicRange, setRateCorrection)
+		
+		Option to also use "sls_detector_put threaded 0" to improve speed by 
+		eliminating progress display during acquisition. Effective only for 
+		large detectors.
+		
+	
+	Detector Server
+	---------------
+	7.	(Eiger) Virtual class to execute on pc.
+	
+	8. 	One can now read temperatures during acquisition. It goes via the stop
+		server.
+		
+	9.	(Jungfrau) One can start server in "debug" mode and then program the
+		new firmware via software command "sls_detector_put programfpga xx.pof".
+		
+	10.	(Jungfrau) Server can exit on start up if either the firmware or the 
+		server is incompatible with each other.
+	
+	11.	(Jungfrau) One is able to set transmission delay (ms) of image for each
+		individual detector using "txndelay_frame" command. Beneficial for 
+		large detectors.
+		
+	12.	(Jungfrau) One can set a threshold temperature (temp_threshold) and 
+		enable the temperature control feature (temp_control). When the 
+		temperature (temp_fpga) overshoots the threshold temperature, it will
+		set the temperature event (temp_event) and power off the chip. One must
+		then switch off the detector and check cooling. Switching back on starts
+		with defaults.
+		
+	13.	(25um Gotthard) Added start acquisition delay to master module.
+	
+	14. (Gotthard) New constraints include minimum exposure time is 186 ns and
+		minimum period is 1278 ns + current exposure time.
+	
+	
+	Receiver
+	--------
+	14. The detectorip and rx_udpip does not have to be in the same subnet anymore.
+		Add the following commands after rx_hostname in config file to overwrite
+		mac configuration:
+		rx_udpmac [router mac]
+		configuremac 0 
+		
+	15.	Added silent mode to receiver using command r_silent [i] from client. 
+		It might be beneficial for max frame rate applications.
+		
+	16.	Receiver print out can handle black or white backgrounds.
+	
+	17.	zmq package included updated to v4.0.8.
+	
+	18.	Zmq streaming from receiver also sends file index in json header.
+	
+	
 	Gui
 	---
-	
+	18.	If acquisition is done, but "stop dummy packet" to the gui was lost in 
-	1.	(Jungfrau) Gain plot included. Option under 2D options in Plot tab.
+		the network, stop acquisition command will restream it so that the gui
-	
+		doesnt hang forever. This is used only for very fast detectors like 
-	2.	Option to maintain aspect ratio
+		Moench.
-	
-	3.	Start and Stop separated to prevent multiple click syndrome.
-	
-
-	Detector Server
-	---------------
-	
-	1. 	(Jungfrau) To use programfpga command, one must start server with -update
-		mode and then restart server without -update mode.
-	
-	2.	(Jungfrau) ASIC Timer configured at server start up and changed a few
-		startup values for firmware v0.7 such as adc phase, ADC_PORT_INVERT_VAL
-		and ADC offset half speed value.
-		
-	3.	(Jungfrau) Minimum exposure time of 50 us was implemented.
-	
-	4. 	(Eiger and Jungfrau) They can be configured to have x and y coord values
-		of the detector in their udp header.
 
 
 
-
+Resolved Issues
-5. Resolved Issues
-==================
-
-	Client
-	------
-	memory leak for multi threading
-	
-	1.	Compiler flag -std=c++98 enforced. Debug flag removed.
-	
-	2.	If trimen gives different list from different detectors, it returns a -1.
-	
-	3.	Version format for each submodule of the package changed to just date YYMMDD.
-		Users class fixed to give correct version, instead of -1.
-		
-	4.	Getting settings in users class gave -1. Fixed now.
-
-	5.	(Jungfrau) Programming FPGA now creates the rawbin file from pof in tmp
-		rather than source file location (for permission issues).
-		
-	6.	(Gotthard) ROI segmentation fault fixed.
-		
-	Receiver
-	--------
-	
-	1.	Silent feature of receiver fixed.
-	
-	2. 	Socket descriptor misused earlier for success flag, instead exceptions
-		used that are handled inside the package.
-
-	3.	Global optind variable initialized to instantiate multiple receivers 
-		in same process. Also removed static members to enable this feature.
-		
-	4.	Socket buffer size attempts to set for each acquiistion and provide
-		warning if no capabilities. Warnings can be removed using instruction with
-		error provided. Default Jungfrau UDP socket buffer size if 2 GB, default is 
-		100 MB.
-		
-	5.	Refactored code a bit for performance and robustness, blocking push 
-		in buffer between listener and dataprocessor
-
-	
-	Detector Server
-	---------------
-	
-	1.	(Jungfrau) Stop server also mapped during a reset. Reading power status
-		instead of user input register for power.
-	
-	2.	(Eiger) Bug fix for saving trimbits to file (Advanced users).
-	
-	3.	(Gotthard 25um) config.txt is not read again after detector startup,
-		no matter the number of times the detector server is restarted. 
-
-	
-6. Known Issues
 ===============
 
-	Receiver
-	--------
-	
-	1. 	HDF5 compression and filters are not implemented yet.
-	
-	
-	Detector Server
-	---------------
-	
-	1.	(Eiger) Registers mapped differently between firmware v20 and v22.
-		So, please ensure correct on-board server before switching between
-		firmware versions. Else one cannot ping it anymore. Will need to flash firmware
-		again to recover.
-		
-	2.	(Gotthard) To switch back to all ADC from single ADC ROI, one must take
-		even number of images for the receiver to understand complete images.
-		This will be fixed in the next firmware upgrade.
-	
-	
-	
-7. Next Major Release Plans
-===========================
 
 	Client
 	------
+	1. 	gethostbyname used in connecting to sockets was not thread safe for 
+		multiple detectors. Using getaddrinfo for stability in multi threaded
+		environment.
 	
-	1.	Exceptions thrown to the user to be handled.
+	2. 	Updated writing content of config and parameter dump into files.
 	
-	2. 	Compilation using c++11.
+	3. 	More locking to handle main and processing threads using the threadpool.
+		Removing unlock twice, which is undefined behavior.
+			
+
+	Detector Server
+	---------------
+	4. 	(Eiger) The hardware MAC of the detector is used during configuration 
+		and relayed  back to client. Similarly, hardware IP for 1 Gbe data mode.
+		
+	5. 	(Eiger) Status will return error if there was the unlikely trouble 
+		reading status register in the front end board. Earlier, it would only 
+		return idle.
+		
+	6.	(Jungfrau) patch server v3.0.0.6.3
+		Able to set settings, high voltage now correctly reads 0 when 
+		switched off, dacs are properly set.
+			
+	7. 	(Jungfrau) FPGA reset and programming FPGA firmware via software is done
+		properly
+		
+	8. 	(Gotthard) patch server v3.0.0.5.1
+		Able to read temperature properly.
+		
+	9. 	(Gotthard) butst mode if set too fast had unwanted behavior such as 
+		sending same image continuously. Now it is handled to display error
+		and stop acquisition.
+		
+	10.	(Gotthard) completely removed the possibility to set timing modes 
+		other than auto and trigger as they are not implemented anyway. Also
+		signal index 1, 2 and 3 are reserved and hence, cannot be configured for
+		an external trigger.
+		
+	11.	Non Mythen and non Eiger detectors can also now get settings file from 
+		board.
+		
+	12. (Gotthard) Did not get first few images initially after configuring MAC
+		of detector. Fixed.
 	
-	3.	Support of Mythen II restricted to this major and its minor releases.
 	
-	4.	Restructuring and refactoring of client code. 
+	Receiver
+	--------
+	12.	Made it easier to disable the standard receiver and fixing bugs related 
+		to the use of a custom one. 
+		
+	13.	(Jungfrau) HDF5 dimensions (npixelsY) required for mapping fixed.
+	
+	14.	patch2-v3.0.0-slsReceiverSoftware.patch
+		x, y and z coordinates in the call backs and the files are hardcoded 
+		for this release. 
+		
+	15.	Rest implementation (not used by standard receiver) removed.
+
+	
+	Gui
+	---
+	16.	patch1-v3.0.0-slsDetectorGui.patch
+		(Eiger) In expert mode and in advanced tab, when trimbits 
+		loaded are different for every pixel, the gui complains and sets 
+		all trimbits to zero. This has been resolved. Now, the "Set All 
+		Trimbits" field is just set to -1.
+		
+	17.	Fixed segmentation fault of xputsn properly.
+	
+	18.	Upon clicking on "Start", clears acquiring flag in shared memory
+		caused due to an earlier interrupted acquisition from Ctrl+C"
+		
+	19.	Fixed plotting twice caused due to unzooming the first time.
+	
+	20.	Removed option for compression in Gui as it is not available currently.
+	
+	21. Can also show Jungfrau multi detector in x direction in gui.
+	
+	22. Switching tabs sometimes results in delay and gates fields being incorrectly
+		enabled. Fixed.
+
+
+	
+Known Issues
+============
+
+
+	Client
+	------
+	1.	File name prefix can only be done at multi deector level. Changing at 
+		individual detector level will not include scan or position variables.
+
+	
+	Detector Server
+	---------------
+	2.	Standard header fills x-coord in 1D. y-coord and z-coord is not 
+		implemented (3D).
+
+
+	Receiver
+	--------
+	3. 	HDF5 compression and filters are not implemented yet.
+	
+
+	
+
 
 
 

cleansharedmemory.sh

@@ -1 +1 @@
-rm /dev/shm/slsDetectorPackage*;
+for i in seq `ipcs -m | cut -d ' ' -f1`; do ipcrm -M $i; done;

cmk.sh

@@ -6,7 +6,6 @@ COMPILERTHREADS=0
 TEXTCLIENT=0
 RECEIVER=0
 GUI=0
-DEBUG=0
 
 
 CLEAN=0
@@ -25,7 +24,6 @@ Usage: $0 [-c] [-b] [-h] [-d <HDF5 directory>] [-j]
  -r: Build/Rebuilds only receiver
  -g: Build/Rebuilds only gui
  -j: Number of threads to compile through
- -e: Debug mode
  
 For only make:
 ./cmk.sh
@@ -55,7 +53,7 @@ For rebuilding only certain sections
  
  " ; exit 1; }
 
-while getopts ":bchd:j:trge" opt ; do
+while getopts ":bchd:j:trg" opt ; do
 	case $opt in
 	b) 
 		echo "Building of CMake files Required"
@@ -92,11 +90,7 @@ while getopts ":bchd:j:trge" opt ; do
 		echo "Compiling Options: GUI" 
 		GUI=1
 		REBUILD=1
-		;;  
+		;;      
-	e)
-		echo "Compiling Options: Debug" 
-		DEBUG=1
-		;;    
     \?)
      	echo "Invalid option: -$OPTARG" 
 		usage
@@ -151,12 +145,7 @@ else
 	fi
 fi
 
-#Debug
+CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug "
-if [ $DEBUG -eq 1 ]; then
-	CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug "
-	echo "Debug Option enabled"
-fi 
-
 
 #hdf5 rebuild
 if [ $HDF5 -eq 1 ]; then

examples/bchip2modules.config

@@ -1,61 +0,0 @@
-detsizechan 2560 1
-
-hostname bchip074+bchip075+
-
-#replace my_installation_path 
-settingsdir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
-caldir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
-
-0:extsig:0 trigger_in_rising_edge
-0:rx_tcpport 1954
-0:rx_udpport 50001
-0:vhighvoltage 0
-
-1:extsig:0 trigger_in_rising_edge
-1:rx_tcpport 1955
-1:rx_udpport 50002
-#1:detectorip 10.1.1.52
-1:vhighvoltage 0
-
-##############################################################################
-#########
-######### Uncomment this part to use the gotthard25umZmq process
-#########
-##############################################################################
-
-# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
-#0:rx_zmqip my_receiver_hostname 
-#0:rx_zmqport 30003
-# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
-#0:zmqip my_client_hostname 
-#0:zmqport  40003
-
-# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
-#1:rx_zmqip my_receiver_hostname 
-#1:rx_zmqport 30004
-# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
-#1:zmqip  my_client_hostname 
-#1:zmqport  40004
-
-##############################################################################
-#########
-######### until here
-#########
-##############################################################################
-
-
-r_readfreq 1
-rx_datastream 1
-
-#replace my_receiver_hostname with the hostname of 1Gb IP of the machine where the receiver runs
-rx_hostname my_receiver_hostname
-rx_datastream 1
-outdir /tmp/
-angconv none
-threaded 1
-
-settings veryhighgain
-exptime 0.000005
-period 0.0001
-
-vhighvoltage 90

examples/bchip2modules_pc8829.config

@@ -1,61 +0,0 @@
-detsizechan 2560 1
-
-hostname bchip074+bchip075+
-
-#replace my_installation_path 
-settingsdir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
-caldir /my_installation_path/slsDetectorPackage/settingsdir/gotthard
-
-0:extsig:0 trigger_in_rising_edge
-0:rx_tcpport 1954
-0:rx_udpport 50001
-0:vhighvoltage 0
-
-1:extsig:0 trigger_in_rising_edge
-1:rx_tcpport 1955
-1:rx_udpport 50002
-#1:detectorip 10.1.1.52
-1:vhighvoltage 0
-
-##############################################################################
-#########
-######### Uncomment this part to use the gotthard25umZmq process
-#########
-##############################################################################
-
-# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
-#0:rx_zmqip my_receiver_hostname 
-#0:rx_zmqport 30003
-# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
-#0:zmqip my_client_hostname 
-#0:zmqport  40003
-
-# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
-#1:rx_zmqip my_receiver_hostname 
-#1:rx_zmqport 30004
-# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
-#1:zmqip  my_client_hostname 
-#1:zmqport  40004
-
-##############################################################################
-#########
-######### until here
-#########
-##############################################################################
-
-
-r_readfreq 1
-rx_datastream 1
-
-#replace my_receiver_hostname with the hostname of 1Gb IP of the machine where the receiver runs
-rx_hostname my_receiver_hostname
-rx_datastream 1
-outdir /tmp/
-angconv none
-threaded 1
-
-settings veryhighgain
-exptime 0.000005
-period 0.0001
-
-vhighvoltage 90

examples/gotthard.config

@@ -3,8 +3,12 @@ hostname bchip007
 #0:port 1952
 #0:stopport 1953
 #0:rx_tcpport 1956 must also have this in receiver config file
+0:settingsdir /home/l_maliakal_d/mySoft/newMythenSoftware/settingsdir/gotthard
 0:angdir 1.000000
 0:moveflag 0.000000
+0:lock 0
+0:caldir /home/l_maliakal_d/mySoft/newMythenSoftware/settingsdir/gotthard
+0:ffdir /home/l_maliakal_d
 0:extsig:0 off
 #0:detectorip 129.129.202.9
 0:detectormac 00:aa:bb:cc:dd:ee
@@ -16,6 +20,7 @@ hostname bchip007
 master -1
 sync none
 outdir /bigRAID/datadir_gotthard/rec_test_data
+ffdir /home/l_maliakal_d
 headerbefore none
 headerafter none
 headerbeforepar none
@@ -24,4 +29,4 @@ badchannels none
 angconv none
 globaloff 0.000000
 binsize 0.001000
-
+threaded 1

examples/howto_gotthatd_twomodules.txt

@@ -1,14 +0,0 @@
-Turn on the two receivers:
-slsReceiver --rx_tcpport 1954 &
-slsReceiver --rx_tcpport 1955 &
-
-Switch on the photon conversion on the receiver machine (replace my_receiver_hostname):
-gotthard25umZmq my_receiver_hostname 30003 my_receiver_hostname 40003 &
-
-Run the configuration file:
-sls_detector_put config bchip2modules.config 
-
-
-Start your measurements using the command line, the slsDetectorGui or the EPICS driver
-
-

examples/jungfrau.config

@@ -1,15 +1,18 @@
 hostname bchip038+
 
+settingsdir /home/mySoft/slsDetectorsPackage/settingsdir/jungfrau
+caldir /home/mySoft/slsDetectorsPackage/settingsdir/jungfrau
+lock 0
+
 0:rx_udpport 50004
 0:rx_udpip 10.1.1.100
 0:detectorip 10.1.1.10
+
 rx_hostname pcmoench01
 
 powerchip 1
-
+timing auto
-#extsig:0 trigger_in_rising_edge
-#timing trigger
 
 outdir /external_pool/jungfrau_data/softwaretest
-
+threaded 1
 

examples/jungfrau_two.config

@@ -1,6 +1,11 @@
 detsizechan 1024 1024
 hostname bchip048+bchip052+
 
+settingsdir /home/mySoft/slsDetectorsPackage/settingsdir/jungfrau
+caldir /home/mySoft/slsDetectorsPackage/settingsdir/jungfrau
+lock 0
+
+
 0:rx_udpport 50004
 0:rx_udpip 10.1.1.100
 0:rx_udpmac F4:52:14:2F:32:00
@@ -17,9 +22,9 @@ hostname bchip048+bchip052+
 rx_hostname pcmoench01
 
 powerchip 1
-#extsig:0 trigger_in_rising_edge
+extsig:0 trigger_in_rising_edge
-#timing trigger
+timing auto
 
 outdir /external_pool/jungfrau_data/softwaretest
-
+threaded 1
 

examples/moench03_T1_lab.config

@@ -1,489 +0,0 @@
-hostname bchip085+
-
-patword 0000 0000000000000000
-patword 0001 0000000000000000
-patword 0002 0008000900080000
-patword 0003 0008000900080000
-patword 0004 0008000900080000
-patword 0005 0008000900080000
-patword 0006 0008000900080000
-patword 0007 0008000900080000
-patword 0008 0008000900080000
-patword 0009 0008000900080000
-patword 000a 0008000900080000
-patword 000b 0008000900080000
-patword 000c 0008000900080000
-patword 000d 0008000900080000
-patword 000e 0008000900080000
-patword 000f 0008000900080000
-patword 0010 0008000900080000
-patword 0011 0008000900080000
-patword 0012 0008000900080000
-patword 0013 0008000900080000
-patword 0014 0008000900080000
-patword 0015 0008000900080000
-patword 0016 0008400900080020
-patword 0017 0008400900080020
-patword 0018 0008599f0418503a
-patword 0019 0008599f0418503a
-patword 001a 0108599f0418503a
-patword 001b 0108599f0418503a
-patword 001c 0108599f0418503a
-patword 001d 0108599f0418503a
-patword 001e 0108599f0418503a
-patword 001f 0108599f0418503a
-patword 0020 0108599f0418503a
-patword 0021 0108599f0418503a
-patword 0022 0108599f0418503a
-patword 0023 0108599f0418503a
-patword 0024 0108599f0418503a
-patword 0025 0108599f0418503a
-patword 0026 0108599f0418503a
-patword 0027 0108599f0418503a
-patword 0028 0108599f0418503a
-patword 0029 0108599f0418503a
-patword 002a 0108599f0418503a
-patword 002b 0108599f0418503a
-patword 002c 0108599f0418503a
-patword 002d 0108599f0418503a
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-patword 003a 0108599f0418503a
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-patword 003c 0108599f0418503a
-patword 003d 0108599f0418503a
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-patword 003f 0108599f0418503a
-patword 0040 0108599f0418503a
-patword 0041 0108599f0418503a
-patword 0042 0108599f0418503a
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-patword 004c 0108599f0418503a
-patword 004d 0108599f0418503a
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-patword 0050 0108599f0418503a
-patword 0051 0108599f0418503a
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-patword 0053 0108599f0418503a
-patword 0054 0108599f0418503a
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-patword 0058 0108599f0418503a
-patword 0059 0108599f0418503a
-patword 005a 0108599f0418503a
-patword 005b 0108599f0418503a
-patword 005c 0108599f0418503a
-patword 005d 0108599f0418503a
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-patword 0060 0108599f0418503a
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-
-
-####mcp2011
-#0:rx_udpip 10.1.1.102
-#0:detectorip 10.1.1.19
-#0:rx_udpport 32410
-####gui listening to 
-#zmqip 129.129.202.131
-#zmqport 30001
-####data streaming out of
-#rx_zmqip 10.1.2.103
-#rx_zmqport 30003
-#0:rx_hostname mpc2011
-
-####mx-test-1
-0:rx_udpip 10.1.1.100
-0:detectorip 10.1.1.19
-0:rx_udpport 32410
-####gui listening to (on receiver pc)
-zmqip 129.129.202.92
-zmqport 30001
-####data streaming out of
-rx_zmqip 10.1.1.100
-rx_zmqport 30003
-0:rx_hostname pcmoench01
-
-
-
-
-
-
-
-
-
-
-
-#turn on datastream from commandline
-rx_datastream 1
-
-r_readfreq 1
-
-#0:configuremac -1
-rx_datastream 1
-
-r_readfreq 1
-
-
-dac:6 800
-dac:0 1300
-dac:4 1428
-dac:1 1000
-dac:7 900
-dac:3 680
-dac:2 1400
-dac:5 1200
-adcinvert 4a342593
-samples 5000
-adcphase 90
-adcpipeline 15
-adcreg 14 40
-powerchip 1
-vhighvoltage 90
-period 0.005
-
-
-
-
-
-
-frames 100
-period 0.1
-outdir /scratch/
-enablefwrite 0
-

examples/two_gotthard.config

@@ -8,11 +8,13 @@ hostname bchip007+bchip009+
 #0:port 1952
 #0:stopport 1953
 #0:rx_tcpport 1956 
+0:settingsdir /home/l_msdetect/dhanya/slsDetectorsPackage/settingsdir/gotthard
 0:angdir 1.000000
 0:moveflag 0.000000
+0:lock 0
+0:caldir /home/l_msdetect/dhanya/slsDetectorsPackage/settingsdir/gotthard
 0:ffdir /home/l_msdetect
 0:extsig:0 off
-
 0:detectorip 10.1.1.2
 #0:detectormac 00:aa:bb:cc:dd:ee
 #0:rx_udpport 50001
@@ -26,11 +28,13 @@ hostname bchip007+bchip009+
 #1:port 1952
 #1:stopport 1953
 1:rx_tcpport 1957
+1:settingsdir /home/l_msdetect/dhanya/slsDetectorsPackage/settingsdir/gotthard
 1:angdir 1.000000
 1:moveflag 0.000000
+1:lock 0
+1:caldir /home/l_msdetect/dhanya/slsDetectorsPackage/settingsdir/gotthard
 1:ffdir /home/l_msdetect
 1:extsig:0 off
-
 1:detectorip 10.1.2.2
 #1:detectormac 00:aa:bb:cc:dd:ee
 1:rx_udpport 50004
@@ -52,4 +56,4 @@ badchannels none
 angconv none
 globaloff 0.000000
 binsize 0.001000
-
+threaded 1

manual/docs/html/slsDetectors-FAQ/WARNINGS

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+No implementation found for style `calc'
+No implementation found for style `framed'
+
+? brace missing for \
+
+Substitution of arg to newlabelxx delayed.
+
+? brace missing for \textit

manual/docs/html/slsDetectors-FAQ/footnode.html

@@ -0,0 +1,101 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
+
+<!--Converted with LaTeX2HTML 2008 (1.71)
+original version by:  Nikos Drakos, CBLU, University of Leeds
+* revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
+* with significant contributions from:
+  Jens Lippmann, Marek Rouchal, Martin Wilck and others -->
+<HTML>
+<HEAD>
+<TITLE>Footnotes</TITLE>
+<META NAME="description" CONTENT="Footnotes">
+<META NAME="keywords" CONTENT="slsDetectors-FAQ">
+<META NAME="resource-type" CONTENT="document">
+<META NAME="distribution" CONTENT="global">
+
+<META NAME="Generator" CONTENT="LaTeX2HTML v2008">
+<META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
+
+<LINK REL="STYLESHEET" HREF="slsDetectors-FAQ.css">
+
+</HEAD>
+
+<BODY >
+
+<DL>
+<DT><A NAME="foot1316">... tab&nbsp;</A><A
+ HREF="MYTHEN.html#tex2html20"><SUP>3.1</SUP></A></DT>
+<DD>The default name of the calibrated trimfiles is <I>trimbits/beamline/</I><I>settings</I><I>/noise.snxxx</I> where  <I>settings</I> is the chosen settings. You  can change it in <I>src/qDetector.h</I> and then recompile the acquisition program as described in&nbsp;<A HREF="#sec:installation"><IMG  ALIGN="BOTTOM" BORDER="1" ALT="[*]"
+ SRC="file:/usr/share/latex2html/icons/crossref.png"></A>.
+
+<PRE>.
+.
+.
+.
+.
+.
+.
+.
+.
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+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+</PRE>
+</DD>
+<DT><A NAME="foot1317">....snxxx&nbsp;</A><A
+ HREF="MYTHEN.html#tex2html21"><SUP>3.2</SUP></A></DT>
+<DD>The default name of the calibration file <I>calibration/</I><I>settings</I><I>.snxxx</I> where  <I>settings</I> is the chosen settings. You  can change it in <I>src/qDetector.h</I> and then recompile the acquisition program.
+
+<PRE>.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
+.
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+.
+.
+</PRE>
+</DD>
+</DL>
+</BODY>
+</HTML>

manual/docs/html/slsDetectors-FAQ/index.html

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+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
+
+<!--Converted with LaTeX2HTML 2008 (1.71)
+original version by:  Nikos Drakos, CBLU, University of Leeds
+* revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
+* with significant contributions from:
+  Jens Lippmann, Marek Rouchal, Martin Wilck and others -->
+<HTML>
+<HEAD>
+<TITLE>SLS Detectors
+Frequently Asked Questions</TITLE>
+<META NAME="description" CONTENT="SLS Detectors
+Frequently Asked Questions">
+<META NAME="keywords" CONTENT="slsDetectors-FAQ">
+<META NAME="resource-type" CONTENT="document">
+<META NAME="distribution" CONTENT="global">
+
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+
+<LINK REL="STYLESHEET" HREF="slsDetectors-FAQ.css">
+
+</HEAD>
+
+<BODY >
+
+<P>
+
+<H1 ALIGN=CENTER>SLS Detectors
+<BR>
+Frequently Asked Questions</H1>
+<P ALIGN=CENTER><STRONG>Anna Bergamaschi</STRONG>
+</P>
+<BR><P ALIGN=CENTER><B>Date:</B> February 27, 2018</P>
+
+<HR>
+
+<BR><HR>
+
+</BODY>
+</HTML>

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manual/docs/html/slsDetectors-FAQ/labels.pl

@@ -0,0 +1,269 @@
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+1;
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+
+# LaTeX2HTML 2008 (1.71)
+# labels from external_latex_labels array.
+
+
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manual/docs/html/slsDetectors-FAQ/slsDetectors-FAQ.css

@@ -0,0 +1,30 @@
+/* Century Schoolbook font is very similar to Computer Modern Math: cmmi */
+.MATH    { font-family: "Century Schoolbook", serif; }
+.MATH I  { font-family: "Century Schoolbook", serif; font-style: italic }
+.BOLDMATH { font-family: "Century Schoolbook", serif; font-weight: bold }
+
+/* implement both fixed-size and relative sizes */
+SMALL.XTINY		{ font-size : xx-small }
+SMALL.TINY		{ font-size : x-small  }
+SMALL.SCRIPTSIZE	{ font-size : smaller  }
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+BIG.HUGE		{ font-size : larger   }
+BIG.XHUGE		{ font-size : xx-large }
+
+/* heading styles */
+H1		{  }
+H2		{  }
+H3		{  }
+H4		{  }
+H5		{  }
+
+/* mathematics styles */
+DIV.displaymath		{ }	/* math displays */
+TD.eqno			{ }	/* equation-number cells */
+
+
+/* document-specific styles come next */

manual/docs/html/slsDetectors-FAQ/slsDetectors-FAQ.html

@@ -0,0 +1,41 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
+
+<!--Converted with LaTeX2HTML 2008 (1.71)
+original version by:  Nikos Drakos, CBLU, University of Leeds
+* revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
+* with significant contributions from:
+  Jens Lippmann, Marek Rouchal, Martin Wilck and others -->
+<HTML>
+<HEAD>
+<TITLE>SLS Detectors
+Frequently Asked Questions</TITLE>
+<META NAME="description" CONTENT="SLS Detectors
+Frequently Asked Questions">
+<META NAME="keywords" CONTENT="slsDetectors-FAQ">
+<META NAME="resource-type" CONTENT="document">
+<META NAME="distribution" CONTENT="global">
+
+<META NAME="Generator" CONTENT="LaTeX2HTML v2008">
+<META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
+
+<LINK REL="STYLESHEET" HREF="slsDetectors-FAQ.css">
+
+</HEAD>
+
+<BODY >
+
+<P>
+
+<H1 ALIGN=CENTER>SLS Detectors
+<BR>
+Frequently Asked Questions</H1>
+<P ALIGN=CENTER><STRONG>Anna Bergamaschi</STRONG>
+</P>
+<BR><P ALIGN=CENTER><B>Date:</B> February 27, 2018</P>
+
+<HR>
+
+<BR><HR>
+
+</BODY>
+</HTML>

manual/manual-api/CMakeLists.txt

@@ -1,35 +0,0 @@
-set(SOURCES
-    mainReceiver.cpp
-)
-
-include_directories(
-    ../../slsReceiverSoftware/include
-    ../../slsDetectorSoftware/slsDetectorAnalysis 
-    ../../build/bin 
-    ../../slsdetectorSoftware/slsDetector 
-)
-
-add_executable(slsMultiReceiver
-    ${SOURCES}
-)
-
-target_link_libraries(slsMultiReceiver
-    slsReceiverShared
-    pthread
-    zmq
-    rt
-    ${HDF5_LIBRARIES}
-)
-
-if (HDF5_FOUND)
-    target_link_libraries(slsMultiReceiver 
-    ${HDF5_LIBRARIES}
-    )
-endif ()
-
-
-set_target_properties(slsMultiReceiver PROPERTIES
-    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-)
-
-install(TARGETS slsMultiReceiver DESTINATION bin)

manual/manual-api/Makefile

@@ -1,26 +1,18 @@
-PKGDIR		=	../..
+INCLUDES	=   -I . 
-LIBDIR		=   $(PKGDIR)/build/bin
-INCLUDES	=   -I . -I$(PKGDIR)/slsReceiverSoftware/include -I$(PKGDIR)/slsDetectorSoftware/slsDetectorAnalysis -I$(LIBDIR) -I$(PKGDIR)/slsDetectorSoftware/slsDetector 
 SRC_DET		= 	mainClient.cpp 	
 SRC_REC		=   mainReceiver.cpp
-ZMQLIBDIR	= 	$(PKGDIR)/slsReceiverSoftware/include
+LIBDIR		=   .
-LDFLAG_DET 	=	-I. -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread -lrt -L$(ZMQLIBDIR) -Wl,-rpath=$(ZMQLIBDIR) -lzmq
+LDFLAG_DET 	=	-I. -L$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread -lrt -L. -lzmq
-LDFLAG_REC 	=	-I. -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread -lrt -L$(ZMQLIBDIR) -Wl,-rpath=$(ZMQLIBDIR) -lzmq
+LDFLAG_REC 	=	-I. -L$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread -lrt -L. -lzmq
 DESTDIR		?=	../docs
 
-HDF5 		?=	no
-HDF5_DIR 	?=	/opt/hdf5v1.10.0
 
-ifeq ($(HDF5),yes)
+all: docs detUser detReceiver 
-	LDFLAG_REC += -L$(HDF5_DIR)/lib  -Wl,-rpath=$(HDF5_DIR)/lib -lhdf5 -lhdf5_cpp -lsz -lz -DHDF5C 
-endif
-
-all: docs detUser slsMultiReceiver 
 #all: docs
 
 docs: createdocs docspdf docshtml removedocs
 
-createdocs: slsDetectorUsers.doxy mainClient.cpp mainReceiver.cpp
+createdocs: slsDetectorUsers.doxy slsDetectorUsers.h detectorData.h slsReceiverUsers.h mainClient.cpp mainReceiver.cpp
 	doxygen slsDetectorUsers.doxy	
 
 docspdf: 
@@ -43,20 +35,18 @@ detUser:$(SRC_DET)
 	mkdir -p bin
 	g++ -o bin/detUser $(SRC_DET) $(INCLUDES) $(LDFLAG_DET) -lm -lstdc++
 
-slsMultiReceiver:$(SRC_REC)
+detReceiver:$(SRC_REC)
 	echo "creating receiver"
-	echo $LDFLAG_REC
 	mkdir -p bin
-	g++ -o bin/slsMultiReceiver $(SRC_REC) $(INCLUDES) $(LDFLAG_REC) -lm -lstdc++
+	g++ -o bin/detReceiver $(SRC_REC) $(INCLUDES) $(LDFLAG_REC) -lm -lstdc++
-	cp bin/slsMultiReceiver $(LIBDIR)
+	
 	
 clean:
 	echo "cleaning for manual-api"
-	rm -rf bin/detUser bin/slsMultiReceiver bin/detReceiver slsDetectorUsersDocs
+	rm -rf bin/detUser bin/detReceiver slsDetectorUsersDocs
 	rm -rf slsDetectorUsersDocs
 	rm -rf $(DESTDIR)/html/slsDetectorUsersDocs
 	rm -rf $(DESTDIR)/pdf/slsDetectorUsersDocs.pdf
-	rm -rf $(LIBDIR)/slsMultiReceiver
 	
 
 

manual/manual-api/detectorData.h

@@ -0,0 +1 @@
+../../slsDetectorSoftware/slsDetectorAnalysis/detectorData.h

manual/manual-api/libSlsDetector.so

@@ -0,0 +1 @@
+../../build/bin/libSlsDetector.so

manual/manual-api/libSlsReceiver.so

@@ -0,0 +1 @@
+../../build/bin/libSlsReceiver.so

manual/manual-api/libzmq.a

@@ -0,0 +1 @@
+../../slsReceiverSoftware/include/libzmq.a

manual/manual-api/mainClient.cpp

@@ -54,12 +54,7 @@ int main(int argc,  char **argv) {
 
 
 	/** - slsDetectorUsers Object is instantiated with appropriate ID */
-	int ret = 1;
+	slsDetectorUsers *pDetector = new  slsDetectorUsers (id);
-	slsDetectorUsers *pDetector = new slsDetectorUsers (ret, id);
-	if (ret == 1) {
-		std::cout << "Error: Could not instantiate slsDetectorUsers" << std::endl;
-		return EXIT_FAILURE;
-	}
 
 
 	/** - if specified, load configuration file (necessary at least the first time it is called to properly configure advanced settings in the shared memory) */
@@ -76,6 +71,11 @@ int main(int argc,  char **argv) {
 
 	/** - registering data callback */
 	pDetector->registerDataCallback(&dataCallback, NULL);
+	/** - if receiver exists, enable data streaming from receiver to get the data */
+	pDetector->enableDataStreamingFromReceiver(1);
+	/** - create zmq sockets in client to enable data streaming in of data from receiver/different process */
+	pDetector->enableDataStreamingToClient(1);
+
 
 
 	/** - ensuring detector status is idle before starting acquisition. exiting if not idle */

manual/manual-api/mainReceiver.cpp

@@ -54,7 +54,7 @@ void sigInterruptHandler(int p){
  */
 void printHelp() {
 	cprintf(RESET, "Usage:\n"
-			"./slsMultiReceiver(detReceiver) [start_tcp_port] [num_receivers] [1 for call back, 0 for none]\n\n");
+			"./detReceiver [start_tcp_port] [num_receivers] [1 for call back, 0 for none]\n\n");
 	exit(EXIT_FAILURE);
 }
 
@@ -71,7 +71,7 @@ void printHelp() {
  */
 int StartAcq(char* filepath, char* filename, uint64_t fileindex, uint32_t datasize, void*p){
 	cprintf(BLUE, "#### StartAcq:  filepath:%s  filename:%s fileindex:%llu  datasize:%u ####\n",
-			filepath, filename, (long long unsigned int)fileindex, datasize);
+			filepath, filename, fileindex, datasize);
 
 	cprintf(BLUE, "--StartAcq: returning 0\n");
 	return 0;
@@ -83,80 +83,45 @@ int StartAcq(char* filepath, char* filename, uint64_t fileindex, uint32_t datasi
  * @param p pointer to object
  */
 void AcquisitionFinished(uint64_t frames, void*p){
-	cprintf(BLUE, "#### AcquisitionFinished: frames:%llu ####\n",(long long unsigned int)frames);
+	cprintf(BLUE, "#### AcquisitionFinished: frames:%llu ####\n",frames);
 }
 
-
 /**
  * Get Receiver Data Call back
  * Prints in different colors(for each receiver process) the different headers for each image call back.
- * @param metadata sls_receiver_header metadata
+ * @param frameNumber frame number
+ * @param expLength real time exposure length (in 100ns) or sub frame number (Eiger 32 bit mode only)
+ * @param packetNumber number of packets caught for this frame
+ * @param bunchId bunch id from beamline
+ * @param timestamp time stamp  in 10MHz clock (not implemented for most)
+ * @param modId module id	(not implemented for most)
+ * @param xCoord x coordinates (detector id in 1D)
+ * @param yCoord y coordinates (not implemented)
+ * @param zCoord z coordinates (not implemented)
+ * @param debug debug values if any
+ * @param roundRNumber (not implemented)
+ * @param detType detector type see :: detectorType
+ * @param version version of standard header (structure format)
  * @param datapointer pointer to data
- * @param datasize data size in bytes.
+ * @param datasize data size in bytes
  * @param p pointer to object
  */
-void GetData(char* metadata, char* datapointer, uint32_t datasize, void* p){
+void GetData(uint64_t frameNumber, uint32_t expLength, uint32_t packetNumber, uint64_t bunchId, uint64_t timestamp,
-	slsReceiverDefs::sls_receiver_header* header = (slsReceiverDefs::sls_receiver_header*)metadata;
+		uint16_t modId, uint16_t xCoord, uint16_t yCoord, uint16_t zCoord, uint32_t debug, uint16_t roundRNumber, uint8_t detType, uint8_t version,
-	slsReceiverDefs::sls_detector_header detectorHeader = header->detHeader;
+		char* datapointer, uint32_t datasize, void* p){
 
-	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.row,
+	PRINT_IN_COLOR (modId?modId:xCoord,
 			"#### %d GetData: ####\n"
-			"frameNumber: %llu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %llu"
+			"frameNumber: %llu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %llu\t\ttimestamp: %llu\t\tmodId: %u\t\t"
-			"\t\ttimestamp: %llu\t\tmodId: %u\t\t"
+			"xCoord: %u\t\tyCoord: %u\t\tzCoord: %u\t\tdebug: %u\t\troundRNumber: %u\t\tdetType: %u\t\t"
-			"row: %u\t\tcolumn: %u\t\treserved: %u\t\tdebug: %u"
+			"version: %u\t\tfirstbytedata: 0x%x\t\tdatsize: %u\n\n",
-			"\t\troundRNumber: %u\t\tdetType: %u\t\tversion: %u"
+			xCoord, frameNumber, expLength, packetNumber, bunchId, timestamp, modId,
-			//"\t\tpacketsMask:%s"
+			xCoord, yCoord, zCoord, debug, roundRNumber, detType, version,
-			"\t\tfirstbytedata: 0x%x\t\tdatsize: %u\n\n",
+			((uint8_t)(*((uint8_t*)(datapointer)))), datasize);
-			detectorHeader.row, (long long unsigned int)detectorHeader.frameNumber,
-			detectorHeader.expLength, detectorHeader.packetNumber, (long long unsigned int)detectorHeader.bunchId,
-			(long long unsigned int)detectorHeader.timestamp, detectorHeader.modId,
-			detectorHeader.row, detectorHeader.column, detectorHeader.reserved,
-			detectorHeader.debug, detectorHeader.roundRNumber,
-			detectorHeader.detType, detectorHeader.version,
-			//header->packetsMask.to_string().c_str(),
-            ((uint8_t)(*((uint8_t*)(datapointer)))), datasize);
 }
 
 
 
-/**
- * Get Receiver Data Call back (modified)
- * Prints in different colors(for each receiver process) the different headers for each image call back.
- * @param metadata sls_receiver_header metadata
- * @param datapointer pointer to data
- * @param datasize data size in bytes.
- * @param revDatasize new data size in bytes after the callback.
- * This will be the size written/streamed. (only smaller value is allowed).
- * @param p pointer to object
- */
-void GetData(char* metadata, char* datapointer, uint32_t &revDatasize, void* p){
-	slsReceiverDefs::sls_receiver_header* header = (slsReceiverDefs::sls_receiver_header*)metadata;
-	slsReceiverDefs::sls_detector_header detectorHeader = header->detHeader;
-
-	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.row,
-			"#### %d GetData: ####\n"
-			"frameNumber: %llu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %llu"
-			"\t\ttimestamp: %llu\t\tmodId: %u\t\t"
-			"row: %u\t\tcolumn: %u\t\treserved: %u\t\tdebug: %u"
-			"\t\troundRNumber: %u\t\tdetType: %u\t\tversion: %u"
-			//"\t\tpacketsMask:%s"
-			"\t\tfirstbytedata: 0x%x\t\tdatsize: %u\n\n",
-			detectorHeader.row, (long long unsigned int)detectorHeader.frameNumber,
-			detectorHeader.expLength, detectorHeader.packetNumber, (long long unsigned int)detectorHeader.bunchId,
-			(long long unsigned int)detectorHeader.timestamp, detectorHeader.modId,
-			detectorHeader.row, detectorHeader.column, detectorHeader.reserved,
-			detectorHeader.debug, detectorHeader.roundRNumber,
-			detectorHeader.detType, detectorHeader.version,
-			//header->packetsMask.to_string().c_str(),
-			((uint8_t)(*((uint8_t*)(datapointer)))), revDatasize);
-
-	// if data is modified, eg ROI and size is reduced
-	revDatasize = 26000;
-}
-
-
-
-
 /**
  * Example of main program using the slsReceiverUsers class
  *
@@ -244,8 +209,7 @@ int main(int argc, char *argv[]) {
 
 				/* 	- Call back for raw data */
 				cprintf(BLUE, "Registering     GetData() \n");
-				if (withCallback == 1) receiver->registerCallBackRawDataReady(GetData,NULL);
+				receiver->registerCallBackRawDataReady(GetData,NULL);
-				else if (withCallback == 2) receiver->registerCallBackRawDataModifyReady(GetData,NULL);
 			}
 
 

manual/manual-api/slsDetectorUsers.doxy

@@ -81,11 +81,7 @@ LATEX_HIDE_INDICES = YES
 SOURCE_BROWSER	= YES
 
 PREDEFINED           = __cplusplus
- 
+
-INPUT            = 		../../slsDetectorSoftware/slsDetector/slsDetectorUsers.h		\
+INPUT            = slsDetectorUsers.h detectorData.h slsReceiverUsers.h mainClient.cpp mainReceiver.cpp
-					 	../../slDetectorSoftware/slsDetectorAnalysis/detectorData.h 	\
-					 	../../slsReceiverSoftware/include/slsReceiverUsers.h 			\
-					 	mainClient.cpp 													\
-					 	mainReceiver.cpp
 
 OUTPUT_DIRECTORY = slsDetectorUsersDocs

manual/manual-api/slsDetectorUsers.h

@@ -0,0 +1 @@
+../../slsDetectorSoftware/slsDetector/slsDetectorUsers.h

manual/manual-api/slsReceiverUsers.h

@@ -0,0 +1 @@
+../../slsReceiverSoftware/include/slsReceiverUsers.h

manual/manual-api/zmq.h

@@ -0,0 +1 @@
+../../slsReceiverSoftware/include/zmq.h

manual/manual-main/Makefile

@@ -4,46 +4,31 @@ DESTDIR=../docs
 TEX=latex
 
 
-MAINTEXS2= slsDetectorInstall.tex 
+MAINTEXS= slsDetectorInstall.tex slsDetectors-FAQ.tex 
-MAINTEXS=slsDetectors-FAQ.tex 
 
 TEXS=slsDetector-softFAQ.tex singlePhotonCounting-FAQ.tex angConv-FAQ.tex generalDet-FAQ.tex 
 
 DVIS = $(MAINTEXS:.tex=.dvi)
 PSS = $(MAINTEXS:.tex=.ps)
 PDFS = $(MAINTEXS:.tex=.pdf)
-PDFS2 = $(MAINTEXS2:.tex=.pdf)
 HTMLS = $(MAINTEXS:%.tex=%)
-HTMLS2 = $(MAINTEXS2:%.tex=%)
 
 
 
 all: pdf html
 	echo $(PWD)
 	echo $(PDFS)
-	echo $(PDFS2)
 	echo $(HTMLS)
-	echo $(HTMLS2)
 
-pdf: $(PDFS) $(PDFS2)
+pdf: $(PDFS)
 	$(shell test -d $(DESTDIR) || mkdir -p $(DESTDIR))
 	$(shell test -d $(DESTDIR)/pdf || mkdir -p $(DESTDIR)/pdf)
-	mv $(PDFS) $(DESTDIR)/pdf
+	mv $(PDFS) $(DESTDIR)/pdf	
-	mv $(PDFS2) $(DESTDIR)/pdf	
 
-html: $(HTMLS) $(HTMLS2)
+html: $(HTMLS)
 
 
 $(HTMLS): $(TEXS) $(MAINTEXS)
-	$(shell test -d $(DESTDIR) || mkdir -p $(DESTDIR))
-	$(shell test -d $(DESTDIR)/html || mkdir -p $(DESTDIR)/html)
-	$(shell test -d $(DESTDIR)/html/$@ && rm -fr $(DESTDIR)/html/$@)
-	echo "*****************************  $@"
-	latex $@.tex
-	latex2html $@.tex
-	mv $@ $(DESTDIR)/html
-	
-$(HTMLS2): $(MAINTEXS2)
 	$(shell test -d $(DESTDIR) || mkdir -p $(DESTDIR))
 	$(shell test -d $(DESTDIR)/html || mkdir -p $(DESTDIR)/html)
 	$(shell test -d $(DESTDIR)/html/$@ && rm -fr $(DESTDIR)/html/$@)
@@ -68,7 +53,7 @@ $(HTMLS2): $(MAINTEXS2)
 
 
 clean:
-	rm -rf *.aux *.log *.toc *.out $(DVIS) $(PSS) $(PDFS) $(PDFS2) $(HTMLS) $(HTMLS2)
+	rm -rf *.aux *.log *.toc *.out $(DVIS) $(PSS) $(PDFS) $(HTMLS)
 	rm -rf $(DESTDIR)/html/slsDetectors-FAQ
 	rm -rf $(DESTDIR)/html/slsDetectorInstall
 	rm -rf $(DESTDIR)/pdf/slsDetectors-FAQ.pdf

manual/manual-main/slsDetectorInstall.tex

@@ -28,10 +28,9 @@
 The SLS detectors software is intended to control the detectors developed by
 the SLS Detectors group. The detectors currently supported are:
 
-\indent MYTHEN, GOTTHARD, EIGER and JUNGFRAU.
+MYTHEN, GOTTHARD, EIGER and JUNGFRAU.\bigskip
 
-
+\noindent The package provides software for the distributed system that comprises of
-The package provides software for the distributed system that comprises of
 detectors, data receivers (to process detector data), and the client (to control
 or monitor the system). The client and data receivers can be embedded in
 the user's acquisitions system. Furthermore, the package also provides some
@@ -61,11 +60,6 @@ The \textit{data receiver}, which can be run on a different machine than the
 client, receives the data from the detector and processes it. The receiver can
 be configured, controlled and monitored by the client.
 
-\item \textcolor{blue}{slsMultiReceiver}: \\
-It is the same as the \textit{slsReceiver}, but that it is a single process 
-for many multiple slsReceiver child processes. One can configure the start TCP port,
-number of slsReceiver processes and if call back should be enabled or not.
-
 \item \textcolor{blue}{slsDetectorGUI}: \\
 The \textit{graphical user interface}, which provides a user friendly way
 of operating the detectors and data receivers with online data preview.
@@ -84,28 +78,18 @@ However, only control commands work, not the data acquisition itself.
 \section{Install Binaries via Conda}
 This section is useful only if one wants to download only the binaries for
 specific distribution and use the package via command line. Please refer later
-sections to download source code and compile them.
+sections to download source code and compile them.\bigskip
 
+\noindent One can download and install Miniconda via 
 
-One can download and install Miniconda via 
+\url{https://conda.io/miniconda.html} \bigskip
 
-\url{https://conda.io/miniconda.html}
+\noindent The conda package uses Travis CI for continuous integration with
-
-
-The conda package uses Travis CI for continuous integration with
 automatic deployment to Anaconda Cloud. One can download only the package or the
-package including the python interface.
+package including the python interface. \bigskip
 
+\noindent After the installation, the binaries will be available in your path.
 
-After the installation, the binaries will be available in your path.
-
-Please remember to clear shared memory after installation.
-\begin{verbatim}
-#displays list of shared memeory segments 
-ipcs -m
-#remove segments that have nattach equal to zero. They key is the first column
-ipcrm -M [key]
-\end{verbatim}
 
 \begin{itemize}
  \item Only the package
@@ -115,13 +99,13 @@ conda config --add channels conda-forge
 conda config --add channels slsdetectorgroup
 
 #Install latest version
-conda install sls_detector_lib
+conda install sls_detector_software
-conda install sls_detector_gui
 
-#Install specific release
+#Install specific release (GLIBC2.14)
-conda install sls_detector_lib=4.0.0
+conda install sls_detector_software=3.0.1
-conda install sls_detector_gui=4.0.0
 
+#Scientific Linux 6 version (GLIBC2.12)
+conda install sls_detector_software=SL6_3.0.1
 \end{verbatim}
  \item The package including Python interface
 \begin{verbatim}
@@ -132,9 +116,11 @@ conda config --add channels sls_detector
 #Install latest version
 conda install sls_detector
 
-#Install specific release 
+#Install specific release (GLIBC2.14)
-conda install sls_detector=4.0.0
+conda install sls_detector=3.0.1
 
+#Scientific Linux 6 version (GLIBC2.12)
+conda install sls_detector=SL6_3.0.1
 \end{verbatim}
 \end{itemize}
 
@@ -151,13 +137,13 @@ acquisition system, or if one wants to download the source code and compile.
 \begin{verbatim}
 #Clone source code with specific release
 git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch
-4.0.0
+3.0.1
 \end{verbatim}
  \item The package including Python interface
 \begin{verbatim}
 #Clone source code with specific release
 git clone https://github.com/slsdetectorgroup/sls_detector.git --branch
-4.0.0
+3.0.1
 \end{verbatim}
 \end{itemize}
 
@@ -208,10 +194,9 @@ required. One can install it:
  \item via download from:\\
 \url{
 https://download.qt.io/archive/qt/4.8/4.8.2/qt-everywhere-opensource-src-4.8.2.t
-ar.gz} 
+ar.gz} \bigskip
 
-
+\noindent To install:
-To install:
 \begin{verbatim}
 > gunzip qt-everywhere-opensource-src-4.8.2.tar.gz
 > tar xvf qt-everywhere-opensource-src-4.8.2.tar
@@ -222,17 +207,14 @@ To install:
 By default Qt4 will be installed in /usr/local/Trolltech/Qt-4.8.2/. 
 \end{itemize}
 
+\noindent \textbf{Setup Environment} 
 
-\textbf{Setup Environment} 
+\noindent One has to ensure that \verb=PATH= and \verb=LD_LIBRARY_PATH= have
-
-
-One has to ensure that \verb=PATH= and \verb=LD_LIBRARY_PATH= have
 been updated to include Qt4 install path, binaries and libraries.
 Confirm by executing \verb=qmake -v= and ensuring the result points to Qt4 (not
-Qt3 or Qt5). 
+Qt3 or Qt5). \bigskip
 
-
+\noindent If the environment is not set up, one can add the libraries and
-If the environment is not set up, one can add the libraries and
 executables to the .bashrc by adding
 \verb=LD_LIBRARY_PATH= and \verb=PATH=:
 \begin{verbatim}
@@ -246,10 +228,9 @@ export LD_LIBRARY_PATH=$QTDIR/lib:$LD_LIBRARY_PATH
 Before installing Qwt, one must install Qt
 and ensure that \verb=QTDIR=, \verb=LD_LIBRARY_PATH= and \verb=PATH= point to
 the correct Qt4
-version.
+version. \bigskip
 
-
+\noindent A Qwt version equal or higher than 6 is required. One can
-A Qwt version equal or higher than 6 is required. One can
 install it:
 \begin{itemize}
  \item via YUM:
@@ -259,9 +240,9 @@ install it:
  \item via download from:\\
 \url{
 https://sourceforge.net/projects/qwt/files/qwt/6.0.0/qwt-6.0.0.zip/download}
+\bigskip
 
-
+\noindent To install:
-To install:
 \begin{verbatim}
 > cd qwt-6.0.0
 > qmake
@@ -271,14 +252,12 @@ To install:
 By default Qwt will be installed int /usr/local/qwt-6.0.0 
 \end{itemize}
 
-\textbf{Setup Environment} 
+\noindent \textbf{Setup Environment} 
 
+\noindent One has to ensure that \verb=QWTDIR= and \verb=LD_LIBRARY_PATH= have
+been updated to include Qwt install path and libraries. \bigskip
 
-One has to ensure that \verb=QWTDIR= and \verb=LD_LIBRARY_PATH= have
+\noindent If the environment is not set up, one can add the libraries to the
-been updated to include Qwt install path and libraries.
-
-
-If the environment is not set up, one can add the libraries to the
 .bashrc by adding \verb=LD_LIBRARY_PATH=:
 \begin{verbatim}
 export QWTDIR=/usr/local/qwt-6.0.0/
@@ -345,8 +324,6 @@ Usage: [-c] [-b] [-h] [-d HDF5 directory] [-j]
 
 Some example options for compilation:
 
-Most basic option: \verb=./cmk.sh -b=
-
 For only make: \verb=./cmk.sh=
 
 For make clean;make: \verb=./cmk.sh -c=
@@ -390,66 +367,10 @@ sls_detector_help sls_detector_put  slsReceiver
 
 
 
-
-\subsection{Setting environment variables}
-One can set up the environment variables in the following ways.
-
-\subsubsection{Using .bashrc file}
-\begin{enumerate}
- \item \verb=emacs ~/.bashrc=
- \item Add the following function \verb=setup_slsdet= and replace \verb=path=
-with absolute path of installed directory
-\begin{verbatim}
-function setup_slsdet
-{ 
-export PKGPATH=[path]
-export LD_LIBRARY_PATH=$PKGPATH/slsDetectorPackage/build/bin:$LD_LIBRARY_PATH
-export PATH=$PKGPATH/slsDetectorPackage/build/bin:$PATH
-cd $PKGPATH/slsDetectorPackage/build/bin
-} 
-\end{verbatim}
-  \item \verb=source ~/.bashrc=
-  \item Next time, just run \verb=setup_slsdet= to load the environment
-variables.
-\end{enumerate}
-
-
-One can also add the GUI environment variables if installed locally by adding
-the following in the function \verb=setup_sldet= \\
-\begin{verbatim}
-export QTDIR=/path-where-it-is/Qt-4.8.2
-export QWTDIR=/path-where-it-is/qwt-6.0.1
-export QWT3D=/path-where-it-is/qwtplot3d
-export QMAKESPEC=$QTDIR/mkspecs/linux-g++
-export LD_LIBRARY_PATH=$QTDIR/lib:$QWTDIR/lib:$QWT3D/lib:$LD_LIBRARY _PATH
-export PATH=$QTDIR/bin:$PATH
-\end{verbatim}
-
-\subsubsection{Without .bashrc file}
-Go to binaries folder slsDetectorPackage/build/bin and execute the following:
-\begin{verbatim}
-export LD_LIBRARY_PATH=$PWD:$LD_LIBRARY_PATH
-export PATH=$PWD:$PATH
-\end{verbatim}
-
-
-\subsection{Clean Shared Memory}
-It is very crucial to clean the shared memory, before using a new version of
-the SLS Detector Package or a different detector type.
-
-One can use the \verb=cleansharedmemory.sh= script available under the
-slsDetector Package.
-
-One can also just delete the files that are typically located under /dev/shm/ folder
-and starts with slsDetectorPackage.
-
-One no longer has to delete segments using ipcs.
-
-
 \section{Software Upgrade}
 
 The upgrade of the package could require an upgrade of the on-board detector
-server and/or firmware running on the detector as well.
+server and/or firmware running on the detector as well. 
 
 
 \subsection{MYTHEN}
@@ -458,7 +379,7 @@ themselves (which would require dedicated softwares) but only to download on the
 detector board the programming files and/or software package provided by
 the SLS Detectors group.
 
-\subsubsection{MYTHEN Firmware}
+\subsubsection{Firmware}
 
 To upgrade the firmware you need either a working version of the Altera
 Quartus software or of the Quartus programmer, which can easily be downloaded
@@ -468,10 +389,9 @@ from: \\
 
 \noindent Normally, installation of the software and of the driver for the
 USB-Blaster (provided together with the MYTHEN detector) are simpler under
-Windows. 
+Windows. \bigskip
 
-
+\noindent Under Windows, the first time that you connect the USB-Blaster to one
-Under Windows, the first time that you connect the USB-Blaster to one
 of your USB ports, you will be asked to install new hardware. Set the path to
 search for the driver to:
 \verb=C:\altera\80sp1\qprogrammer\drivers\usb-blasterp= (where 
@@ -494,7 +414,7 @@ your cable (pin1 corresponds) and that you have selected the correct programming
 connector.
 \end{enumerate}
 
-\subsubsection{MYTHEN On-board Software}
+\subsubsection{On-board Software}
 \begin{enumerate}
  \item Connect to the board using telnet:
 \begin{verbatim}
@@ -534,311 +454,6 @@ acqusition program correctly start.
 \end{enumerate}
 
 
-
-
-\subsection{GOTTHARD}
-
-In such cases, the users are not expected to compile the software
-themselves (which would require dedicated softwares) but only to download on the
-detector board the programming files and/or software package provided by
-the SLS Detectors group.
-
-\subsubsection{GOTTHARD Firmware}
-\textit{For SLS Detector Package v4.0.0} \\
-\indent Minimum compatible version: \\
-\indent \indent 11.01.2013 \\
-\indent Latest version:	\\
-\indent \indent 08.02.2018 (50um) \\
-\indent \indent 08.02.2018 (25 um Master) \\
-\indent \indent 09.02.2018 (25 um Slave) \\
-
-Normally, the firmware will be upgraded by us as it requires programming the
-FPGA via the USB-Blaster.
-
-
-To upgrade the firmware you need either a working version of the Altera
-Quartus software or of the Quartus programmer, which can easily be downloaded
-from: \\
-\url{https://www.altera.com/download/programming/quartus2/pq2-index.jsp}
-
-
-Normally, installation of the software and of the driver for the
-USB-Blaster (provided together with the MYTHEN detector) are simpler under
-Windows.
-
-
-Under Windows, the first time that you connect the USB-Blaster to one
-of your USB ports, you will be asked to install new hardware. Set the path to
-search for the driver to:
-\verb=C:\altera\80sp1\qprogrammer\drivers\usb-blasterp= (where 
-\verb=C:\altera\80sp1\qprogrammer\= is assumed to be ther path where your
-Quartus version is installed).
-\begin{enumerate}
-\item After starting the Quartus programmer, click on Hardware Setup and in the
-"Currently selected hardware" window select USB-Blaster.
-\item In the Mode combo box select "Active Serial Programming".
-\item Plug the end of your USB-Blaster WITH THE ADAPTER PROVIDED in the
-connector ASMI on the MCS board taking care that pin1 corresponds to the one
-indexed and with the rectangualr pad.
-\item Click on add file and from select the programming file provided when
-the upgrade has been reccomended.
-\item Check "Program/Configure" and "Verify".
-\item Push the start button and wait until the programming process is
-finished (progress bar top left).
-\item In case the programmer gives you error messages, check the polarity of
-your cable (pin1 corresponds) and that you have selected the correct programming
-connector.
-\end{enumerate}
-
-\subsubsection{GOTTHARD On-board Software}
-Every SLS Detector package release will have its coresponding matching on-board
-server under \textbf{slsDetectorPackage/serverBin}.
-
-\begin{enumerate}
-  \item Install tftp if the pc does not have it.
-  \item Copy the server from serverBin folder to /tftpboot (or equivalent tftp
-folder) of the pc
-  \item Copy the server to the detector by:
-  \begin{enumerate}
-    \item Connect to the blackfin on the detector\\ 
-\verb=telnet bchipxxx=
-    \item Prevent existing on-board server from respawning by:
-    \begin{enumerate}
-      \item Edit \verb=/etc/inittab= 
-      \item Comment out the line
-\verb=#ttyS0::respawn:/gotthardDetectorServervxxx= 
-      \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure no gotthardDetectorServers are running
-    \end{enumerate}
-    \item Copy new on-board server from pc to the blackfin using: \\
-\verb=tftp pcxxx -r gotthardDetectorServerxxx -g= 
-    \item Respawn the new server (server starts at detector statup): 
-    \begin{enumerate}
-      \item Edit \verb=/etc/inittab= 
-      \item Uncomment out the line
-\verb=ttyS0::respawn:/gotthardDetectorServervxxx= 
-      \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure that both the gotthardDetectorServers are
-running.\\
-\verb=gotthardDetectorServerxxx= \\
-\verb=gotthardDetectorServerxxx 1953=
-    \end{enumerate}
-  \end{enumerate}
-\end{enumerate}
-
-
-
-\subsection{EIGER}
-
-In such cases, the users are not expected to compile the software
-themselves (which would require dedicated softwares) but only to download on the
-detector board the programming files and/or software package provided by
-the SLS Detectors group.
-
-\subsubsection{EIGER Firmware}
-\textit{For SLS Detector Package v4.0.0} \\
-\indent Minimum compatible version:  22 \\
-\indent Latest version:	22  \\
-
-
-\begin{enumerate}
-  \item One must get the latest package's corresponding bit files from the SLS
-Detector Group.
-  \item If one does not have the bcp script, that should also be obtained from
-the SLS Detector Group. It is required to program the bit files and requires
-that tftp be installed on the pc.
-  \item Bring the detector into programmable mode by either of the following ways.
-Both ways end up in just the central LED blinking.
-  \begin{enumerate}
-    \item hard reset on the back panel boards resulting in blinking LEDS 
-    \item by having the following program running in the background. 
-    \begin{verbatim}
-    boot_recovery
-    \end{verbatim}
-\end{enumerate}
-  \item Start a terminal for each half module and run the following to see 
-progress.
-\begin{verbatim}
-	nc -p 3000 -u bebxxx 3000 
-\end{verbatim}
-  \item Run the following to update firmware
-\begin{verbatim}
- #update back end fpga
-bcp download.bit bebxxx:/fw0
-
- #update front left fpga
-bcp download.bit bebxxx:/febl
-
- #update front right fpga
-bcp download.bit bebxxx:/febr
-
- #update kernel
-bcp download.bit bebxxx:/kernel
-\end{verbatim}
-Please update bit files with great caution as it could make your board
-inaccessible, if done incorrectly.
-\end{enumerate}
-
-
-
-\subsubsection{EIGER On-board Software}
-Every SLS Detector package release will have its coresponding matching on-board
-server under \textbf{slsDetectorPackage/serverBin}.
-
-
-Update the on-board software without connecting to the detector
-\begin{verbatim}
-#password for the boards: root
-
-#Kill existing servers that are running on the detector
-ssh root@beb031 killall eigerDetectorServer;
-
-#Copy on-board server to detector inside executables folder
-scp ~/path-where-it-is/eigerDetectorServerxxx root@bebxxx:~/executables;
-
-#Overwrite the actual eigerDetectorServer on board
-scp ~/path-where-it-is/eigerDetectorServerxxx
-root@bebxxx:~/executables/eigerDetectorServer;
-
-#sync
-ssh root@bebxxx sync; 
-
-#reboot the eiger board
-\end{verbatim}
-
-
-\bigskip One can connect to the detector by:
-\begin{verbatim}
-ssh root@bebxxx
-password: root
-\end{verbatim}
-
-
-The on-board server is in ~/executables folder and respawned at startup in \\
-\verb=/etc/rc5.d/S50board_com.sh= 
-
-
-
-
-
-\subsection{JUNGFRAU}
-
-In such cases, the users are not expected to compile the software
-themselves (which would require dedicated softwares) but only to download on the
-detector board the programming files and/or software package provided by
-the SLS Detectors group.
-
-\subsubsection{JUNGFRAU Firmware}
-\textit{For SLS Detector Package v4.0.0} \\
-\indent Minimum compatible version: 15.06.2018 \\
-\indent Latest version: 15.06.2018 \\
-
-
-At times, one has to update the firmware, which then also requires updating the
-on-board software. 
-
-
-\textbf{\textit{Jungfrau firmware can be upgraded via the SLS Detector Package
-binaries from the command line.}}
-
-\begin{enumerate}
-  \item One must get the latest package's corresponding POF file from the SLS
-Detector Group.
-  \item Update the latest SLS Detector package installed.
-  \item Update the on-board software as per the instructions in the next
-section.
-  \item Start the on-board server in update mode:
-  \begin{enumerate}
-    \item Connect to the blackfin on the detector\\ 
-\verb=telnet bchipxxx=
-    \item Prevent existing on-board server from respawning by:
-    \begin{enumerate}
-      \item Edit \verb=/etc/inittab= 
-      \item Comment out the line
-\verb=#ttyS0::respawn:/jungfrauDetectorServervxxx= 
-      \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure no jungfrauDetectorServers are running
-    \end{enumerate}
-    \item Start the server in update mode using: \\
-\verb=./jungfrauDetectorServerxxx -update= \\
-    Leave this console on to come back to it later.
-  \end{enumerate}
-  \item From the command line of the pc, clear shared memory \\
-\verb=./sls_detector_get free= \\
-  If one gets shmget error, please clean the shared memory properly using the
-script in \verb=slsDetectorPackage/cleansharedmemory.sh=
-  \item Add the detector to shared memory using \\
-\verb=./sls_detector_put hostname bchipxxx=
-  \item Program the FPGA using \\
-\verb=./sls_detector_put programfpga xxx.pof= 
-  \item Once the programming is done:
-  \begin{enumerate}
-    \item Switch to the console that has the update server running and kill it
-using Ctrl+C and ensure no jungfrauDetectorServers are
-running
-    \item Restart the new server to see if it runs with the new firmware \\
-\verb=./jungfrauDetectorServerxxx= \\
-If the server didn't start properly, please contact us with the error message
-shown when starting the server up, else continue with the following steps.
-    \item Respawn the new server (server starts at detector statup): 
-    \begin{enumerate}
-      \item Edit \verb=/etc/inittab= 
-      \item Uncomment out the line
-\verb=ttyS0::respawn:/jungfrauDetectorServervxxx= 
-      \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure that both the gotthardDetectorServers are
-running.\\
-\verb=jungfrauDetectorServervxxx= \\
-\verb=jungfrauDetectorServervxxx 1953=
-    \end{enumerate}
-  \end{enumerate}
-
-\end{enumerate}
-
-
-
-\subsubsection{JUNGFRAU On-board Software}
-Every SLS Detector package release will have its coresponding matching on-board
-server under \textbf{slsDetectorPackage/serverBin}.
-
-
-\begin{enumerate}
-  \item Install tftp if the pc does not have it.
-  \item Copy the server from serverBin folder to /tftpboot (or equivalent tftp
-folder) of the pc
-  \item Copy the server to the detector by:
-  \begin{enumerate}
-    \item Connect to the blackfin on the detector\\ 
-\verb=telnet bchipxxx=
-    \item Prevent existing on-board server from respawning by:
-    \begin{enumerate}
-      \item Edit \verb=/etc/inittab= 
-      \item Comment out the line
-\verb=#ttyS0::respawn:/jungfrauDetectorServervxxx= 
-      \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure no gotthardDetectorServers are running
-    \end{enumerate}
-    \item Copy new on-board server from pc to the blackfin using: \\
-\verb=tftp pcxxx -r jungfrauDetectorServervxxx -g= 
-    \item Respawn the new server (server starts at detector statup): 
-    \begin{enumerate}
-      \item Edit \verb=/etc/inittab= 
-      \item Uncomment out the line
-\verb=ttyS0::respawn:/jungfrauDetectorServervxxx= 
-      \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure that both the gotthardDetectorServers are
-running.\\
-\verb=jungfrauDetectorServervxxx= \\
-\verb=jungfrauDetectorServervxxx 1953=
-    \end{enumerate}
-  \end{enumerate}
-\end{enumerate}
-
-
-
-
-
-
 \begin{comment}
 \section{Detector system architecture}
 

recipe/build.sh

@@ -1,15 +0,0 @@
-mkdir build
-mkdir install
-cd build
-cmake .. \
-      -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \
-      -DCMAKE_INSTALL_PREFIX=install \
-      -DUSE_TEXTCLIENT=ON \
-      -DUSE_RECEIVER=ON \
-      -DUSE_GUI=ON \
-      -DCMAKE_BUILD_TYPE=Release \
-      -DUSE_HDF5=OFF\
-     
-
-cmake --build . -- -j10
-cmake --build . --target install

recipe/copy_gui.sh

@@ -1,15 +0,0 @@
-
-mkdir $PREFIX/lib
-mkdir $PREFIX/bin
-mkdir $PREFIX/include
-
-#No libs for gui?
-
-#Binaries
-cp build/bin/gui_client $PREFIX/bin/.
-cp build/bin/slsDetectorGui $PREFIX/bin/.
-
-
-#Which headers do we need for development??
-
-# cp include/some_lib.h $PREFIX/include/.

recipe/copy_lib.sh

@@ -1,23 +0,0 @@
-
-mkdir $PREFIX/lib
-mkdir $PREFIX/bin
-mkdir $PREFIX/include
-mkdir $PREFIX/include/slsDetectorPackage
-
-#Shared and static libraries
-cp build/bin/libSlsDetector.so $PREFIX/lib/.
-cp build/bin/libSlsDetector.a $PREFIX/lib/.
-cp build/bin/libSlsReceiver.so $PREFIX/lib/.
-cp build/bin/libSlsReceiver.a $PREFIX/lib/.
-
-#Binaries
-cp build/bin/sls_detector_acquire $PREFIX/bin/.
-cp build/bin/sls_detector_get $PREFIX/bin/.
-cp build/bin/sls_detector_put $PREFIX/bin/.
-cp build/bin/sls_detector_help $PREFIX/bin/.
-cp build/bin/slsReceiver $PREFIX/bin/.
-cp build/bin/slsMultiReceiver $PREFIX/bin/.
-
-#Which headers do we need for development??
-cp build/install/include/* $PREFIX/include/slsDetectorPackage/
-# cp include/some_lib.h $PREFIX/include/.

recipe/meta.yaml

@@ -1,89 +0,0 @@
-
-package:
-  name: sls_detector_software
-  version: "developer"
-
-source:
-  - path: ..
-
-build:
-  number: 0
-  rpaths:
-    - lib/
-
-requirements:
-  build:
-    - {{ compiler('c') }}
-    - {{compiler('cxx')}}
-    - cmake
-    - qwt 6.*
-    - qt=4.8.7=7
-    - zeromq=4.2.5=hfc679d8_5
-    - pyzmq
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - {{ cdt('mesa-libgl-devel') }}      # [linux]
-    - {{ cdt('mesa-libegl-devel') }}     # [linux]
-    - {{ cdt('mesa-dri-drivers') }}      # [linux]
-    - {{ cdt('libselinux') }}      # [linux]
-    - {{ cdt('libxdamage') }}            # [linux]
-    - {{ cdt('libxxf86vm') }}            # [linux]
-
-  host:
-    - libstdcxx-ng
-    - libgcc-ng
-    - libpng >=1.6.32,<1.6.35
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-
-  run:
-    - libstdcxx-ng
-    - libgcc-ng 
-
-outputs:
-  - name: sls_detector_lib
-    version: "developer"
-    script: copy_lib.sh
-    requirements:
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-  - name: sls_detector_gui
-    version: "developer"
-    script: copy_gui.sh
-    requirements:
-      build:
-      - {{ compiler('c') }}
-      - {{compiler('cxx')}}
-      - cmake
-      - qwt 6.*
-      - qt=4.8.7=7
-      - zeromq=4.2.5=hfc679d8_5
-      - pyzmq
-      - xorg-libx11
-      - xorg-libice
-      - xorg-libxext
-      - xorg-libsm
-      - xorg-libxau
-      - xorg-libxrender
-      - xorg-libxfixes
-      - {{ cdt('mesa-libgl-devel') }}      # [linux]
-      - {{ cdt('mesa-libegl-devel') }}     # [linux]
-      - {{ cdt('mesa-dri-drivers') }}      # [linux]
-      - {{ cdt('libselinux') }}      # [linux]
-      - {{ cdt('libxdamage') }}            # [linux]
-      - {{ cdt('libxxf86vm') }}            # [linux]
-      run:
-        - sls_detector_lib=developer
-        - qwt 6.*
-        - qt=4.8.7=7

serverBin/eigerDetectorServerv3.0.0.16.10

@@ -0,0 +1 @@
+../slsDetectorSoftware/eigerDetectorServer/bin/eigerDetectorServerv3.0.0.16.10

serverBin/eigerDetectorServerv4.0.0.22.0

@@ -1 +0,0 @@
-../slsDetectorSoftware/eigerDetectorServer/bin/eigerDetectorServerv4.0.0.22.0

serverBin/gotthardDetectorServerv3.0.0.6

@@ -0,0 +1 @@
+../slsDetectorSoftware/gotthardDetectorServer/gotthardDetectorServerv3.0.0.6

serverBin/gotthardDetectorServerv4.0.0.3

@@ -1 +0,0 @@
-../slsDetectorSoftware/gotthardDetectorServer/gotthardDetectorServerv4.0.0.3

serverBin/jungfrauDetectorServerv3.0.0.6.3

@@ -0,0 +1 @@
+../slsDetectorSoftware/jungfrauDetectorServer/bin/jungfrauDetectorServerv3.0.0.6.3

serverBin/jungfrauDetectorServerv4.0.0.0

@@ -1 +0,0 @@
-../slsDetectorSoftware/jungfrauDetectorServer/bin/jungfrauDetectorServerv4.0.0.0

serverBin/moenchDetectorServerv2.0.3

@@ -0,0 +1 @@
+../slsDetectorSoftware/moenchDetectorServer/moenchDetectorServerv2.0.3

settingsdir/gotthard/dynamicgain/calibration.sn

@@ -0,0 +1 @@
+227 5.6

settingsdir/gotthard/dynamicgain/settings.sn

@@ -0,0 +1,8 @@
+Vref 660
+VcascN 650
+VcascP 1480
+Vout 1520
+Vcasc 1320
+Vin 1350
+Vref_comp 350
+Vib_test 2001

settingsdir/gotthard/highgain/calibration.sn

@@ -0,0 +1 @@
+227 5.6