Interpolation has problems. To be checked

.clang-format

@@ -1,7 +0,0 @@
-BasedOnStyle: LLVM
-IndentWidth: 4
-
-UseTab: Never
-ColumnLimit: 80
-AlignConsecutiveAssignments: false 
-AlignConsecutiveMacros: true

.clang-tidy

@@ -1,42 +0,0 @@
----
-Checks:          '*, 
-                    -altera-*,
-                    -android-cloexec-fopen,
-                    -cppcoreguidelines-pro-bounds-array-to-pointer-decay, 
-                    -cppcoreguidelines-pro-bounds-pointer-arithmetic, 
-                    -fuchsia*,
-                    -readability-else-after-return,
-                    -readability-avoid-const-params-in-decls,
-                    -readability-identifier-length,
-                    -cppcoreguidelines-pro-bounds-constant-array-index,
-                    -cppcoreguidelines-pro-type-reinterpret-cast,
-                    -llvm-header-guard,
-                    -modernize-use-nodiscard,
-                    -misc-non-private-member-variables-in-classes,
-                    -readability-static-accessed-through-instance,
-                    -readability-braces-around-statements,
-                    -readability-isolate-declaration,
-                    -readability-implicit-bool-conversion,
-                    -readability-identifier-length,
-                    -readability-identifier-naming,
-                    -hicpp-signed-bitwise,
-                    -hicpp-no-array-decay, 
-                    -hicpp-braces-around-statements,
-                    -google-runtime-references, 
-                    -google-readability-todo, 
-                    -google-readability-braces-around-statements,
-                    -modernize-use-trailing-return-type,
-                    -llvmlibc-*'
-
-HeaderFilterRegex: \.h
-AnalyzeTemporaryDtors: false
-FormatStyle:     none
-CheckOptions:
-  - { key: readability-identifier-naming.NamespaceCase,       value: lower_case }
- # - { key: readability-identifier-naming.FunctionCase,        value: lower_case }
-  - { key: readability-identifier-naming.ClassCase,           value: CamelCase  }
- # - { key: readability-identifier-naming.MethodCase,          value: CamelCase  }
- # - { key: readability-identifier-naming.StructCase,          value: CamelCase  }
- # - { key: readability-identifier-naming.VariableCase,        value: lower_case }
-  - { key: readability-identifier-naming.GlobalConstantCase,  value: UPPER_CASE }
-...

.gitea/workflows/rh8-native.yml

@@ -1,29 +0,0 @@
-name: Build on RHEL8
-
-on:
-  push:
-  workflow_dispatch:
-
-permissions:
-  contents: read
-
-jobs:
-  build:
-    runs-on: "ubuntu-latest"
-    container:
-      image: gitea.psi.ch/detectors/rhel8-detectors-dev
-    steps:
-      - name: Clone repository
-        run: |
-          echo Cloning ${{ github.ref_name }}
-          git clone https://${{secrets.GITHUB_TOKEN}}@gitea.psi.ch/${{ github.repository }}.git --branch=${{ github.ref_name }} .
-
-      - name: Build library 
-        run: |
-            mkdir build && cd build
-            cmake .. -DSLS_USE_PYTHON=ON -DSLS_USE_TESTS=ON -DSLS_USE_SIMULATOR=ON
-            make -j 2 
-
-      - name: C++ unit tests
-        working-directory: ${{gitea.workspace}}/build
-        run: ctest -j1  --rerun-failed --output-on-failure

.gitea/workflows/rh9-native.yml

@@ -1,27 +0,0 @@
-name: Build on RHEL9
-
-on:
-  push:
-  workflow_dispatch:
-
-permissions:
-  contents: read
-
-jobs:
-  build:
-    runs-on: "ubuntu-latest"
-    container:
-      image: gitea.psi.ch/detectors/rhel9-detectors-dev
-    steps:
-      - uses: actions/checkout@v4
-
-
-      - name: Build library 
-        run: |
-            mkdir build && cd build
-            cmake .. -DSLS_USE_PYTHON=ON -DSLS_USE_TESTS=ON  -DSLS_USE_SIMULATOR=ON
-            make -j 2 
-
-      - name: C++ unit tests
-        working-directory: ${{gitea.workspace}}/build
-        run: ctest -j1  --rerun-failed --output-on-failure

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,42 +0,0 @@
----
-name: Bug Report
-about: Create a report to help us improve 
-title: New Bug Report
-labels: action - Bug, priority - Unclassified, status - Pending
-template: bug_report.md
----
-<!-- Preview changes before submitting -->
-<!-- Please fill out everything with an *, as this report will be discarded otherwise -->
-<!-- This is a comment, the syntax is a bit different from c++ or bash -->
-
-##### *Distribution: 
-<!-- RHEL7, RHEL6, Fedora, etc -->
-
-
-##### *Detector type: 
-<!-- If applicable, Eiger, Jungfrau, Mythen3, Gotthard2, Gotthard, Moench, ChipTestBoard -->
-
-##### *Software Package Version: 
-<!-- developer, 4.2.0, 4.1.1, etc -->
-
-##### Priority:
-<!-- Super Low, Low, Medium, High, Super High -->
-
-##### *Describe the bug
-<!--  A clear and concise description of what the bug is -->
-
-##### Expected behavior
-<!--  A clear and concise description of what you expected to happen. -->
-
-##### To Reproduce
-<!--  Steps to reproduce the behavior: -->
-<!--  1. Go to '...' -->
-<!--  2. Click on '....' -->
-<!--  3. Scroll down to '....' -->
-<!--  4. See error -->
-
-##### Screenshots
-<!--  If applicable, add screenshots to help explain your problem. -->
-
-##### Additional context
-<!--  Add any other context about the problem here. -->

.github/ISSUE_TEMPLATE/change_request.md

@@ -1,28 +0,0 @@
----
-name: Change Request
-about: Suggest a change to an existing feature
-title: New Change Request
-labels: action - Change, priority - Unclassified, status - Pending
-template: change_request.md
----
-<!-- Preview changes before submitting -->
-<!-- Please fill out everything with an *, as this report will be discarded otherwise -->
-<!-- This is a comment, the syntax is a bit different from c++ or bash -->
-
-##### *Detector type: 
-<!-- If applicable, Eiger, Jungfrau, Mythen3, Gotthard2, Gotthard, Moench, ChipTestBoard -->
-
-##### *Software Package Version: 
-<!-- developer, 4.2.0, 4.1.1, etc -->
-
-##### Priority:
-<!-- Super Low, Low, Medium, High, Super High -->
-
-##### *State the change request:
-<!--  A clear and concise description of what the change is to an existing feature -->
-
-##### Is your change request related to a problem. Please describe:
-<!-- A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] -->
-
-##### Additional context:
-<!--  Add any other context about the feature here -->

.github/ISSUE_TEMPLATE/config.yml

@@ -1 +0,0 @@
-blank_issues_enabled: false

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,34 +0,0 @@
----
-name: Feature Request
-about: Suggest a feature, documentation or submit a question
-title: New Feature Request
-labels: action - Enhancement, priority - Unclassified, status - Pending
-template: feature_request.md
----
-<!-- Preview changes before submitting -->
-<!-- Please fill out everything with an *, as this report will be discarded otherwise -->
-<!-- This is a comment, the syntax is a bit different from c++ or bash -->
-
-##### *Detector type: 
-<!-- If applicable, Eiger, Jungfrau, Mythen3, Gotthard2, Gotthard, Moench, ChipTestBoard -->
-
-##### *Software Package Version: 
-<!-- developer, 4.2.0, 4.1.1, etc -->
-
-##### Priority:
-<!-- Super Low, Low, Medium, High, Super High -->
-
-##### *State the feature:
-<!--  A clear and concise description of what the feature is -->
-
-##### Is your feature request related to a problem. Please describe:
-<!-- A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] -->
-
-##### Describe the solution you'd like:
-<!-- A clear and concise description of what you want to happen -->
-
-##### Describe alternatives you've considered:
-<!-- A clear and concise description of any alternative solutions or features you've considered -->
-
-##### Additional context:
-<!--  Add any other context about the feature here -->

.github/workflows/build_wheel.yml

@@ -1,64 +0,0 @@
-name: Build wheel
-
-on:
-    workflow_dispatch:
-    pull_request:
-    push:
-      branches:
-        - main
-    release:
-      types:
-        - published
-  
-
-jobs:
-  build_wheels:
-    name: Build wheels on ${{ matrix.os }}
-    runs-on: ${{ matrix.os }}
-    strategy:
-      matrix:
-        os: [ubuntu-latest,]
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Build wheels
-        run: pipx run cibuildwheel==2.23.0
-
-      - uses: actions/upload-artifact@v4
-        with:
-          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
-          path: ./wheelhouse/*.whl
-    
-  build_sdist:
-    name: Build source distribution
-    runs-on: ubuntu-latest
-    steps:
-    - uses: actions/checkout@v4
-
-    - name: Build sdist
-      run: pipx run build --sdist
-
-    - uses: actions/upload-artifact@v4
-      with:
-        name: cibw-sdist
-        path: dist/*.tar.gz
-
-  upload_pypi:
-    needs: [build_wheels, build_sdist]
-    runs-on: ubuntu-latest
-    environment: pypi
-    permissions:
-        id-token: write
-    if: github.event_name == 'release' && github.event.action == 'published'
-    # or, alternatively, upload to PyPI on every tag starting with 'v' (remove on: release above to use this)
-    # if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
-    steps:
-        - uses: actions/download-artifact@v4
-          with:
-            # unpacks all CIBW artifacts into dist/
-            pattern: cibw-*
-            path: dist
-            merge-multiple: true
-
-        - uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/cmake.yaml

@@ -1,47 +0,0 @@
-name: Native CMake Build
-
-on: [push, pull_request]
-
-env:
-  # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.)
-  BUILD_TYPE: Debug
-
-jobs:
-  build:
-    # The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac.
-    # You can convert this to a matrix build if you need cross-platform coverage.
-    # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix
-    runs-on: ubuntu-latest
-    name: Configure and build using cmake
-    steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
-        with:
-          python-version: 3.12
-          cache: 'pip'
-      - run: pip install pytest numpy
-
-      - uses: awalsh128/cache-apt-pkgs-action@latest
-        with:
-          packages: libhdf5-dev qtbase5-dev qt5-qmake libqt5svg5-dev libpng-dev libtiff-dev
-          version: 1.0
-
-      - name: Configure CMake
-        # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make.
-        # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type
-        run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DSLS_USE_TESTS=ON -DSLS_USE_HDF5=ON -DSLS_USE_GUI=ON -DSLS_USE_MOENCH=ON -DSLS_USE_PYTHON=ON
-
-      - name: Build
-        # Build your program with the given configuration
-        run: cmake --build ${{github.workspace}}/build -j4 --config ${{env.BUILD_TYPE}}
-
-      - name: C++ unit tests
-        working-directory: ${{github.workspace}}/build
-        run: ctest -C ${{env.BUILD_TYPE}} -j1 --rerun-failed --output-on-failure
-
-      - name: Python unit tests
-        working-directory: ${{github.workspace}}/build/bin
-        run: |
-          python -m pytest ${{github.workspace}}/python/tests
-
-

.github/workflows/conda_deploy_library.yaml

@@ -1,47 +0,0 @@
-name: Build and deploy slsdetlib
-
-on:
-  release:
-      types:
-        - published
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        platform: [ubuntu-latest, ] # macos-12, windows-2019]
-        python-version: ["3.12",]
-
-    runs-on: ${{ matrix.platform }}
-
-    # The setup-miniconda action needs this to activate miniconda
-    defaults:
-      run:
-        shell: "bash -l {0}"
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Get conda
-        uses: conda-incubator/setup-miniconda@v3.0.4
-        with:
-          python-version: ${{ matrix.python-version }}
-          channels: conda-forge
-
-      - name: Prepare
-        run: conda install conda-build conda-verify pytest anaconda-client
-
-      - name: Enable upload
-        run: conda config --set anaconda_upload yes
-
-      - name: Build
-        env:
-            CONDA_TOKEN: ${{ secrets.CONDA_TOKEN }}
-        run: conda build conda-recipes/main-library --user slsdetectorgroup --token ${CONDA_TOKEN} --output-folder build_output
-
-      - name: Upload all Conda to github as artifacts
-        uses: actions/upload-artifact@v4
-        with:
-          name: conda-packages
-          path: build_output/**  # Uploads all packages

.github/workflows/conda_deploy_slsdet.yaml

@@ -1,47 +0,0 @@
-name: deploy slsdet
-
-on:
-  release:
-      types:
-        - published
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        platform: [ubuntu-latest, ] # macos-12, windows-2019]
-        python-version: ["3.12",]
-
-    runs-on: ${{ matrix.platform }}
-
-    # The setup-miniconda action needs this to activate miniconda
-    defaults:
-      run:
-        shell: "bash -l {0}"
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Get conda
-        uses: conda-incubator/setup-miniconda@v3.0.4
-        with:
-          python-version: ${{ matrix.python-version }}
-          channels: conda-forge
-
-      - name: Prepare
-        run: conda install conda-build conda-verify pytest anaconda-client
-
-      - name: Enable upload
-        run: conda config --set anaconda_upload yes
-
-      - name: Build
-        env:
-            CONDA_TOKEN: ${{ secrets.CONDA_TOKEN }}
-        run: conda build conda-recipes/python-client --user slsdetectorgroup --token ${CONDA_TOKEN} --output-folder build_output
-
-      - name: Upload all Conda packages
-        uses: actions/upload-artifact@v4
-        with:
-          name: conda-packages
-          path: build_output/**  # Uploads all packages

.github/workflows/conda_library.yaml

@@ -1,42 +0,0 @@
-name: Build slsdetlib
-
-on: [pull_request]
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        platform: [ubuntu-latest, ] # macos-12, windows-2019]
-        python-version: ["3.12",]
-
-    runs-on: ${{ matrix.platform }}
-
-    # The setup-miniconda action needs this to activate miniconda
-    defaults:
-      run:
-        shell: "bash -l {0}"
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Get conda
-        uses: conda-incubator/setup-miniconda@v3.0.4
-        with:
-          python-version: ${{ matrix.python-version }}
-          channels: conda-forge
-
-      - name: Prepare
-        run: conda install conda-build conda-verify pytest anaconda-client
-
-      - name: Disable upload
-        run: conda config --set anaconda_upload no
-
-      - name: Build
-        run: conda build conda-recipes/main-library --output-folder build_output
-
-      - name: Upload all Conda packages
-        uses: actions/upload-artifact@v4
-        with:
-          name: conda-packages
-          path: build_output/**  # Uploads all packages

.github/workflows/conda_python.yaml

@@ -1,42 +0,0 @@
-name: slsdet
-
-on: [pull_request]
-
-jobs:
-  build:
-    strategy:
-      fail-fast: false
-      matrix:
-        platform: [ubuntu-latest, ] # macos-12, windows-2019]
-        python-version: ["3.12",]
-
-    runs-on: ${{ matrix.platform }}
-
-    # The setup-miniconda action needs this to activate miniconda
-    defaults:
-      run:
-        shell: "bash -l {0}"
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - name: Get conda
-        uses: conda-incubator/setup-miniconda@v3.0.4
-        with:
-          python-version: ${{ matrix.python-version }}
-          channels: conda-forge
-
-      - name: Prepare
-        run: conda install conda-build conda-verify pytest anaconda-client
-
-      - name: Disable upload
-        run: conda config --set anaconda_upload no
-
-      - name: Build
-        run: conda build conda-recipes/python-client --output-folder build_output 
-
-      - name: Upload all Conda packages
-        uses: actions/upload-artifact@v4
-        with:
-          name: conda-packages
-          path: build_output/**  # Uploads all packages

.gitignore

@@ -6,18 +6,6 @@ bin/
 *.log
 *.out
 *.toc
-*.o
-*.so
-.*
-build/
+build
+docs/
 RELEASE.txt
-Testing/
-
-ctbDict.cpp
-ctbDict.h
-
-
-
-*.pyc
-*/__pycache__/*
-

.travis.yml

@@ -2,37 +2,44 @@ sudo: false
 
 language: cpp
 
-os: linux
+matrix:
+  include:
+    - os: linux
+      env: CONDA_PY=3.6
 
-dist: bionic
+dist: trusty
 
 install:
   - sudo apt-get update
   - ldd --version
   - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
   - bash miniconda.sh -b -p $HOME/miniconda
-  - source "$HOME/miniconda/etc/profile.d/conda.sh"
+  - export PATH="$HOME/miniconda/bin:$PATH"
   - rm -f miniconda.sh
   - hash -r
   - conda config --set always_yes yes --set changeps1 no
   - conda config --add channels conda-forge
   - conda config --add channels slsdetectorgroup
-  - conda update -q conda
-  - conda info -a
+  - conda update conda
+  - conda update --all
+  - conda install conda-build anaconda-client
 
   # Useful for debugging any issues with conda
-  - conda create -q -n testenv conda-build anaconda-client conda-verify
-  - conda activate testenv
+  - conda info -a
+
+
+  # Replace dep1 dep2 ... with your dependencies
+  - conda create -q -n test-environment python=$CONDA_PY
+  - source activate test-environment
   - conda-build .
 
 script:
- - CTEST_OUTPUT_ON_FAILURE=1 ctest -j 2
+ - echo "No test scripts to be run!"
 
 
 deploy:
   provider: script
-  script: find $HOME/miniconda/envs/testenv/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -v --show-traceback -t $CONDA_TOKEN upload --force {} \;
+  script: find $HOME/miniconda/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -t $CONDA_TOKEN upload --force {} \;
   on:
     branch: developer
-    tags: true
 

CMakeLists.txt

@@ -1,466 +1,57 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-cmake_minimum_required(VERSION 3.15)
-project(slsDetectorPackage)
-
-# Read VERSION file into project version
-set(VERSION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/VERSION")
-file(READ "${VERSION_FILE}" VERSION_CONTENT)
-string(STRIP "${VERSION_CONTENT}" PROJECT_VERSION_STRING)
-set(PROJECT_VERSION ${PROJECT_VERSION_STRING})
-
-# Pass it to the compiler
-add_compile_definitions(SLS_DET_VERSION="${PROJECT_VERSION}")
-
-set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
-
-cmake_policy(SET CMP0074 NEW)
-
-if (${CMAKE_VERSION} VERSION_GREATER "3.24")
-    cmake_policy(SET CMP0135 NEW) #Fetch content download timestamp
-endif()
-include(cmake/project_version.cmake)
-include(cmake/SlsAddFlag.cmake)
-include(cmake/helpers.cmake)
-
-
-find_package(Threads REQUIRED)
-
-# POSIX threads are required for the moment but we use CMake to find them
-# Once migrated to std::thread this can be removed
-if(NOT CMAKE_USE_PTHREADS_INIT)
-    message(FATAL_ERROR "A POSIX threads (pthread) implementation is required, but was not found.")
-endif()
-
-
-option(SLS_USE_SYSTEM_ZMQ "Use system installed libzmq" OFF)
-
-# Using FetchContent to get libzmq
-include(FetchContent)
-option(SLS_FETCH_ZMQ_FROM_GITHUB "Fetch zmq from github" OFF)
-option(SLS_FETCH_PYBIND11_FROM_GITHUB "Fetch pybind11 from github" OFF)
-
-
-
-# Allow FetchContent_Populate to be called with a single argument
-# otherwise deprecated warning is issued
-# Note: From cmake 3.28 we can pass EXCLUDE_FROM_ALL to FetchContent_Declare
-# and avoid direct use of Populate
-if (${CMAKE_VERSION} VERSION_GREATER_EQUAL "3.30")
-    cmake_policy(SET CMP0169 OLD) 
-endif()
-
-# Patch libzmq to set minimum cmake version to 3.15 to avoid warnings
-# with newer cmake versions
-# Patch is applied in the FetchContent_Declare
-set(SLS_LIBZMQ_VERSION "4.3.4")
-
-find_program(PATCH_EXECUTABLE patch)
-if(NOT PATCH_EXECUTABLE)
-    message(FATAL_ERROR "The 'patch' tool is required for patching lib zeromq. Please install it.")
-endif()
-
-if(SLS_USE_SYSTEM_ZMQ)
-    # find_package(ZeroMQ REQUIRED)
-    # 1) Try a CMake package config if available (vcpkg, Homebrew, source builds)
-    #    Many installs export either ZeroMQ::libzmq or libzmq.
-    find_package(ZeroMQ QUIET CONFIG)
-
-    set(ZEROMQ_TARGET "")
-
-    if (TARGET ZeroMQ::libzmq)
-        set(ZEROMQ_TARGET ZeroMQ::libzmq)
-        message(STATUS "Found target: ${ZEROMQ_TARGET} version: ${ZeroMQ_VERSION}")
-    elseif (TARGET libzmq)
-        set(ZEROMQ_TARGET libzmq)
-        message(STATUS "Found target: ${ZEROMQ_TARGET} version: ${ZeroMQ_VERSION}")
-    elseif (TARGET ZeroMQ::ZeroMQ) # rare older naming
-        set(ZEROMQ_TARGET ZeroMQ::ZeroMQ)
-        message(STATUS "Found target: ${ZEROMQ_TARGET} version: ${ZeroMQ_VERSION}")
-    endif()
-
-    # 2) Fallback: use pkg-config hints + manual find_* to create an imported target
-    if (NOT ZEROMQ_TARGET)
-        find_package(PkgConfig QUIET)
-        if (PkgConfig_FOUND)
-            pkg_check_modules(PC_ZeroMQ QUIET libzmq)
-        endif()
-
-        find_path(ZEROMQ_INCLUDE_DIR
-            NAMES zmq.h
-            HINTS ${PC_ZeroMQ_INCLUDE_DIRS}
-        )
-
-        find_library(ZEROMQ_LIBRARY
-            NAMES zmq libzmq
-            HINTS ${PC_ZeroMQ_LIBRARY_DIRS}
-        )
-
-        if (ZEROMQ_INCLUDE_DIR AND ZEROMQ_LIBRARY)
-            add_library(libzmq UNKNOWN IMPORTED)
-            set_target_properties(libzmq PROPERTIES
-            IMPORTED_LOCATION "${ZEROMQ_LIBRARY}"
-            INTERFACE_INCLUDE_DIRECTORIES "${ZEROMQ_INCLUDE_DIR}"
-            )
-            set(ZEROMQ_TARGET libzmq)
-        endif()
-        message(STATUS "ZeroMQ version (pkg-config): ${PC_ZeroMQ_VERSION}")
-        
-    endif()
-
-    # 3) Error out if still not found, with a helpful message
-    if (NOT ZEROMQ_TARGET)
-        message(FATAL_ERROR "ZeroMQ (libzmq) not found. Please install ZeroMQ development files.")
-    endif()
-
-# Use it
-# target_link_libraries(your_target PRIVATE ${ZEROMQ_TARGET})
-
-    message(STATUS "Using system installed libzmq: ${ZeroMQ_LIBRARIES}")
-    message(STATUS "ZeroMQ target: ${ZEROMQ_TARGET}")
-    message(STATUS "ZeroMQ include dirs: ${ZeroMQ_INCLUDE_DIRS}")
-else()
-    if(SLS_FETCH_ZMQ_FROM_GITHUB)
-        # Opt in to pull down a zmq version from github instead of
-        # using the bundled version
-        FetchContent_Declare(
-            libzmq
-            GIT_REPOSITORY https://github.com/zeromq/libzmq.git
-            GIT_TAG        v${SLS_LIBZMQ_VERSION}
-            PATCH_COMMAND ${CMAKE_COMMAND} -E chdir <SOURCE_DIR> patch -p1 < ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq_cmake_version.patch
-            UPDATE_DISCONNECTED 1
-        )
-    else()
-        # Standard behaviour use libzmq included in this repo (libs/libzmq)
-        FetchContent_Declare(
-            libzmq
-            URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq-${SLS_LIBZMQ_VERSION}.tar.gz
-            URL_HASH MD5=cc20b769ac10afa352e5ed2769bb23b3
-            PATCH_COMMAND ${CMAKE_COMMAND} -E chdir <SOURCE_DIR> patch -p1 < ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq_cmake_version.patch
-            UPDATE_DISCONNECTED 1
-        )
-    endif()
-
-
-    # Disable unwanted options from libzmq
-    set(BUILD_TESTS OFF CACHE BOOL "Switch off libzmq test build")
-    set(BUILD_SHARED OFF CACHE BOOL "Switch off libzmq shared libs")
-    set(WITH_PERF_TOOL OFF CACHE BOOL "")
-    set(ENABLE_CPACK OFF CACHE BOOL "")
-    set(ENABLE_CLANG OFF CACHE BOOL "")
-    set(ENABLE_CURVE OFF CACHE BOOL "")
-    set(ENABLE_DRAFTS OFF CACHE BOOL "")
-    set(ENABLE_PRECOMPILED OFF CACHE BOOL "")
-    set(WITH_DOC OFF CACHE BOOL "")
-    set(WITH_DOCS OFF CACHE BOOL "")
-
-
-    # Using GetProperties and Populate to be able to exclude zmq
-    # from install (not possible with FetchContent_MakeAvailable(libzmq))
-    FetchContent_GetProperties(libzmq)
-    if(NOT libzmq_POPULATED)
-    FetchContent_Populate(libzmq)
-    add_subdirectory(${libzmq_SOURCE_DIR} ${libzmq_BINARY_DIR} EXCLUDE_FROM_ALL)
-    endif()
-
-endif()
-
-include(GNUInstallDirs)
-
-# If conda build, always set lib dir to 'lib'
-if($ENV{CONDA_BUILD})
-  set(CMAKE_INSTALL_LIBDIR "lib")
-endif()
-
-# Set lower / upper case project names
-string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UPPER)
-string(TOLOWER "${PROJECT_NAME}" PROJECT_NAME_LOWER)
-
-# Set targets export name (used by slsDetectorPackage and dependencies)
-set(TARGETS_EXPORT_NAME "${PROJECT_NAME_LOWER}-targets")
-set(namespace "sls::")
-
+cmake_minimum_required(VERSION 2.8)
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
+set (CALIBRATE OFF)
+
+option (USE_HDF5 "HDF5 File format" OFF)
+option (USE_TEXTCLIENT "Text Client" OFF)
+option (USE_RECEIVER "Receiver" OFF)
+option (USE_GUI "GUI" OFF)
 
 
-# Check if project is being used directly or via add_subdirectory
-set(SLS_MASTER_PROJECT OFF)
-if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
-    set(SLS_MASTER_PROJECT ON)
-endif()
-
-
-
-option(SLS_USE_HDF5 "HDF5 File format" OFF)
-option(SLS_BUILD_SHARED_LIBRARIES "Build shared libaries" OFF)
-option(SLS_USE_TEXTCLIENT "Text Client" ON)
-option(SLS_USE_DETECTOR "Detector libs" ON)
-option(SLS_USE_RECEIVER "Receiver" ON)
-option(SLS_USE_RECEIVER_BINARIES "Receiver binaries" ON)
-option(SLS_USE_GUI "GUI" OFF)
-option(SLS_USE_SIMULATOR "Simulator" OFF)
-option(SLS_USE_TESTS "TESTS" OFF)
-option(SLS_USE_INTEGRATION_TESTS "Integration Tests" OFF)
-option(SLS_USE_SANITIZER "Sanitizers for debugging" OFF)
-option(SLS_USE_PYTHON "Python bindings" OFF)
-option(SLS_INSTALL_PYTHONEXT "Install the python extension in the install tree under CMAKE_INSTALL_PREFIX/python/" OFF)
-option(SLS_USE_CTBGUI "ctb GUI" OFF)
-option(SLS_BUILD_DOCS "docs" OFF)
-option(SLS_BUILD_EXAMPLES "examples" OFF)
-option(SLS_TUNE_LOCAL "tune to local machine" OFF)
-option(SLS_DEVEL_HEADERS "install headers for devel" OFF)
-option(SLS_USE_MOENCH "compile zmq and post processing for Moench" OFF)
-option(SLS_USE_JUNGFRAU "compile post processing for Jungfrau" OFF)
-
-#Convenience option to switch off defaults when building Moench binaries only
-option(SLS_BUILD_ONLY_MOENCH "compile only Moench" OFF)
-if(SLS_BUILD_ONLY_MOENCH)
-    message(STATUS "Build MOENCH binaries only!")
-    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
-    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
-    set(SLS_USE_DETECTOR OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
-    set(SLS_USE_RECEIVER OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
-    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
-    set(SLS_USE_MOENCH ON CACHE BOOL "Enable" FORCE)
-endif()
-
-#Convenience option to switch off defaults when building Jungfrau binaries only
-option(SLS_BUILD_ONLY_JUNGFRAU "compile only Jungfrau" OFF)
-if(SLS_BUILD_ONLY_JUNGFRAU)
-    message(STATUS "Build JUNGFRAU binaries only!")
-    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Disabled for JUNGFRAU_ONLY" FORCE)
-    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Disabled for JUNGFRAU_ONLY" FORCE)
-    set(SLS_USE_DETECTOR OFF CACHE BOOL "Disabled for JUNGFRAU_ONLY" FORCE)
-    set(SLS_USE_RECEIVER OFF CACHE BOOL "Disabled for JUNGFRAU_ONLY" FORCE)
-    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Disabled for JUNGFRAU_ONLY" FORCE)
-    set(SLS_USE_JUNGFRAU ON CACHE BOOL "Enable" FORCE)
-endif()
-
-
-option(SLS_EXT_BUILD "external build of part of the project" OFF)
-if(SLS_EXT_BUILD)
-    message(STATUS "External build using already installed libraries")
-    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_DETECTOR OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_RECEIVER OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Should already exist" FORCE)
-    set(SLS_MASTER_PROJECT OFF CACHE BOOL "No master proj in case of extbuild" FORCE) 
-endif()
-
-#Maybe have an option guarding this?
-set(SLS_INTERNAL_RAPIDJSON_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson)
-
-set(SLS_INTERNAL_QWT_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/qwt-6.1.5)
-
-set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
-                                    "libs/" 
-                                    "slsDetectorCalibration/" 
-                                    "manual/"
-                                    "python/"
-                                    "sample/"
-                                    ${CMAKE_BINARY_DIR})
-find_package(ClangFormat)
-
-set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
-
-default_build_type("Release")
-set_std_fs_lib()
-message(STATUS "Extra linking to fs lib:${STD_FS_LIB}")
-
-#Enable LTO if available
-include(CheckIPOSupported)
-check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
-if((CMAKE_BUILD_TYPE STREQUAL "Release") AND SLS_LTO_AVAILABLE)
-    message(STATUS "Building with link time optimization")
-else()
-    message(STATUS "Building without link time optimization")
-endif()
-
-
-if(SLS_EXT_BUILD)
-    # Find ourself in case of external build
-    find_package(slsDetectorPackage ${PROJECT_VERSION} REQUIRED)
-endif()
-
-
-
-# slsProjectOptions and slsProjectWarnings are used
-# to control options for the libraries
-if(NOT TARGET slsProjectOptions)
-    add_library(slsProjectOptions INTERFACE)
-   target_compile_features(slsProjectOptions INTERFACE cxx_std_17)
-endif()
-
-if (NOT TARGET slsProjectWarnings)
-    add_library(slsProjectWarnings INTERFACE)
-    target_compile_options(slsProjectWarnings INTERFACE 
-        -Wall
-        -Wextra
-        -Wno-unused-parameter
-        # -Wold-style-cast
-        -Wnon-virtual-dtor
-        -Woverloaded-virtual
-        -Wdouble-promotion
-        -Wformat=2
-        -Wredundant-decls
-        # -Wconversion
-        -Wvla
-        -Wdouble-promotion
-        -Werror=return-type
-    )
-    # Add or disable warnings depending on if the compiler supports them 
-    # The function checks internally and sets HAS_warning-name
-    sls_enable_cxx_warning("-Wnull-dereference")
-    sls_enable_cxx_warning("-Wduplicated-cond")
-    sls_disable_cxx_warning("-Wclass-memaccess")
-
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5 AND "${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
-            target_compile_options(slsProjectWarnings INTERFACE 
-                                                -Wno-missing-field-initializers)
-    endif()
-
-
-endif()
-
-
-if (NOT TARGET slsProjectCSettings)
-    #Settings for C code
-    add_library(slsProjectCSettings INTERFACE)
-    target_compile_options(slsProjectCSettings INTERFACE 
-                                                -std=gnu99 #fixed
-                                                -Wall
-                                                -Wextra
-                                                -Wno-unused-parameter
-                                                -Wdouble-promotion
-                                                -Wformat=2
-                                                -Wredundant-decls
-                                                -Wdouble-promotion
-                                                -Werror=return-type
-                                                -Wno-format-overflow 
-                                                -Wno-format-truncation
-                                    )
-    sls_disable_c_warning("-Wstringop-truncation")
-    target_link_libraries(slsProjectCSettings INTERFACE
-        Threads::Threads
-    )
-endif()
-
-
-if(SLS_USE_SANITIZER)
-    target_compile_options(slsProjectOptions INTERFACE -fsanitize=address,undefined -fno-omit-frame-pointer)
-    target_link_libraries(slsProjectOptions INTERFACE -fsanitize=address,undefined)
-    #target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread -fno-omit-frame-pointer)
-    #target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
-endif()
-
-
-if(SLS_TUNE_LOCAL)
-    target_compile_options(slsProjectOptions INTERFACE -mtune=native -march=native)
-endif()
-
-
-if(SLS_MASTER_PROJECT)
-install(TARGETS slsProjectOptions slsProjectWarnings 
-    EXPORT "${TARGETS_EXPORT_NAME}"
-    LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
-    ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
-    PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
-)
-endif()
-
-set(CMAKE_POSITION_INDEPENDENT_CODE ON)
-set(CMAKE_INSTALL_RPATH $ORIGIN)
-set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
-
-if (SLS_USE_TESTS)
-    enable_testing()
-    add_subdirectory(tests)
-endif(SLS_USE_TESTS)
-
-
-if(NOT SLS_EXT_BUILD)
-    add_subdirectory(slsSupportLib)
-endif()
-
-if (SLS_USE_DETECTOR OR SLS_USE_TEXTCLIENT)
-    add_subdirectory(slsDetectorSoftware)
+if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 6.0)
+	set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wall -std=c++98 -Wno-misleading-indentation")
+else ()
+	set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -std=c++98")
 endif ()
 
-if (SLS_USE_RECEIVER)
-    add_subdirectory(slsReceiverSoftware) 
-endif (SLS_USE_RECEIVER)
+find_package(Qt4)
+find_package(Qwt 6)
+find_package(CBF)
+find_package(Doxygen)
+# find_package(PNG REQUIRED)
 
-if (SLS_USE_GUI)   
-    add_subdirectory(libs/qwt)  
-    add_subdirectory(slsDetectorGui)
-endif (SLS_USE_GUI)
+if (USE_HDF5)
+	find_package(HDF5 1.10 COMPONENTS CXX)
+endif (USE_HDF5)
 
-if (SLS_USE_SIMULATOR)
-    add_subdirectory(slsDetectorServers)
-endif (SLS_USE_SIMULATOR)
+set(CMAKE_POSITION_INDEPENDENT_CODE ON)
 
-if (SLS_USE_INTEGRATION_TESTS)
-    add_subdirectory(integrationTests)
-endif (SLS_USE_INTEGRATION_TESTS)
+set(CMAKE_INSTALL_RPATH "$ORIGIN")
+set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 
-if (SLS_USE_PYTHON)
-    find_package (Python 3.8 COMPONENTS Interpreter Development.Module REQUIRED)
-    set(PYBIND11_FINDPYTHON ON) # Needed for RH8
-    if(SLS_FETCH_PYBIND11_FROM_GITHUB)
-        FetchContent_Declare(
-            pybind11
-            GIT_REPOSITORY https://github.com/pybind/pybind11
-            GIT_TAG        v2.13.6
-        )
 
-    else()
-    # https://github.com/pybind/pybind11/releases
-        FetchContent_Declare(
-            pybind11
-            URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/pybind11/v2.13.6.tar.gz
-            URL_HASH MD5=a04dead9c83edae6d84e2e343da7feeb
-        )
+if (USE_TEXTCLIENT)
+       add_subdirectory(slsDetectorSoftware)
+endif (USE_TEXTCLIENT)
+
+if (USE_RECEIVER)
+       add_subdirectory(slsReceiverSoftware)
+       add_subdirectory(manual/manual-api)    
+endif (USE_RECEIVER)
+               
+               
+if (USE_GUI)   
+       if (QT4_FOUND AND QWT_FOUND)
+       add_subdirectory(slsDetectorGui)
+       endif()
+endif (USE_GUI)
+
+
+if (CALIBRATE)
+    if (DEFINED ENV{ROOTSYS})
+        find_package(ROOT)
+        if (ROOT_FOUND)
+            add_subdirectory(calibrationWizards)
+        endif()
     endif()
-    FetchContent_MakeAvailable(pybind11)
-
-    add_subdirectory(python)
-endif(SLS_USE_PYTHON)
-
-if (SLS_USE_CTBGUI)
-    add_subdirectory(pyctbgui)
-endif(SLS_USE_CTBGUI)
-
-# Workaround for file note being copied to build directory
-# when issuing a python -m build
-# TODO! Proper fix
-if(EXISTS ".clang-tidy")
-    configure_file(.clang-tidy  
-        ${CMAKE_BINARY_DIR}/.clang-tidy  
-    )
-endif()
-
-
-if (SLS_BUILD_EXAMPLES)
-    add_subdirectory(sample)
-endif(SLS_BUILD_EXAMPLES)
-
-if(SLS_BUILD_DOCS)
-    add_subdirectory(docs)
-endif(SLS_BUILD_DOCS)
-
-if(SLS_USE_MOENCH)
-    add_subdirectory(slsDetectorCalibration/tiffio)
-    add_subdirectory(slsDetectorCalibration/moenchExecutables)
-endif(SLS_USE_MOENCH)
-
-if(SLS_USE_JUNGFRAU)
-    add_subdirectory(slsDetectorCalibration/tiffio)
-    add_subdirectory(slsDetectorCalibration/jungfrauExecutables)
-endif(SLS_USE_JUNGFRAU)
-
-if(SLS_MASTER_PROJECT)
-    set(CMAKE_INSTALL_DIR "share/cmake/${PROJECT_NAME}")
-    set(PROJECT_LIBRARIES slsSupportShared slsDetectorShared slsReceiverShared)
-    include(cmake/package_config.cmake)
-endif()
+endif(CALIBRATE)

COPYING

@@ -1,17 +0,0 @@
-The SLS Detector Package is provided under:
-
-	SPDX-License-Identifier: LGPL-3.0-or-later
-
-Being under the terms of the GNU Lesser General Public License version 3 or later, 
-according with:
-
-	LICENSES/LGPL-3.0
-
-Source code under the Apache 2.0 License have the SPDX Identifier and are 
-according with:
-
-	LICENSES/ThirdParty/Apache-2.0
-
-All contributions to the SLS Detector Package are subject to this COPYING file.
-
-

LICENSES/GPL-3.0

@@ -1,688 +0,0 @@
-Valid-License-Identifier: GPL-3.0
-Valid-License-Identifier: GPL-3.0+
-SPDX-URL: https://spdx.org/licenses/GPL-3.0-or-later.html
-Usage-Guide:
-  To use this license in source code, put one of the following SPDX
-  tag/value pairs into a comment according to the placement
-  guidelines in the licensing rules documentation.
-  For 'GNU Library General Public License (LGPL) version 3.0 only' use:
-    SPDX-License-Identifier: GPL-3.0
-  For 'GNU Library General Public License (LGPL) version 3.0 or any later
-  version' use:
-    SPDX-License-Identifier: GPL-3.0-or-later
-License-Text:
-
-                    GNU GENERAL PUBLIC LICENSE
-                       Version 3, 29 June 2007
-
- Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
- Everyone is permitted to copy and distribute verbatim copies
- of this license document, but changing it is not allowed.
-
-                            Preamble
-
-  The GNU General Public License is a free, copyleft license for
-software and other kinds of works.
-
-  The licenses for most software and other practical works are designed
-to take away your freedom to share and change the works.  By contrast,
-the GNU General Public License is intended to guarantee your freedom to
-share and change all versions of a program--to make sure it remains free
-software for all its users.  We, the Free Software Foundation, use the
-GNU General Public License for most of our software; it applies also to
-any other work released this way by its authors.  You can apply it to
-your programs, too.
-
-  When we speak of free software, we are referring to freedom, not
-price.  Our General Public Licenses are designed to make sure that you
-have the freedom to distribute copies of free software (and charge for
-them if you wish), that you receive source code or can get it if you
-want it, that you can change the software or use pieces of it in new
-free programs, and that you know you can do these things.
-
-  To protect your rights, we need to prevent others from denying you
-these rights or asking you to surrender the rights.  Therefore, you have
-certain responsibilities if you distribute copies of the software, or if
-you modify it: responsibilities to respect the freedom of others.
-
-  For example, if you distribute copies of such a program, whether
-gratis or for a fee, you must pass on to the recipients the same
-freedoms that you received.  You must make sure that they, too, receive
-or can get the source code.  And you must show them these terms so they
-know their rights.
-
-  Developers that use the GNU GPL protect your rights with two steps:
-(1) assert copyright on the software, and (2) offer you this License
-giving you legal permission to copy, distribute and/or modify it.
-
-  For the developers' and authors' protection, the GPL clearly explains
-that there is no warranty for this free software.  For both users' and
-authors' sake, the GPL requires that modified versions be marked as
-changed, so that their problems will not be attributed erroneously to
-authors of previous versions.
-
-  Some devices are designed to deny users access to install or run
-modified versions of the software inside them, although the manufacturer
-can do so.  This is fundamentally incompatible with the aim of
-protecting users' freedom to change the software.  The systematic
-pattern of such abuse occurs in the area of products for individuals to
-use, which is precisely where it is most unacceptable.  Therefore, we
-have designed this version of the GPL to prohibit the practice for those
-products.  If such problems arise substantially in other domains, we
-stand ready to extend this provision to those domains in future versions
-of the GPL, as needed to protect the freedom of users.
-
-  Finally, every program is threatened constantly by software patents.
-States should not allow patents to restrict development and use of
-software on general-purpose computers, but in those that do, we wish to
-avoid the special danger that patents applied to a free program could
-make it effectively proprietary.  To prevent this, the GPL assures that
-patents cannot be used to render the program non-free.
-
-  The precise terms and conditions for copying, distribution and
-modification follow.
-
-                       TERMS AND CONDITIONS
-
-  0. Definitions.
-
-  "This License" refers to version 3 of the GNU General Public License.
-
-  "Copyright" also means copyright-like laws that apply to other kinds of
-works, such as semiconductor masks.
-
-  "The Program" refers to any copyrightable work licensed under this
-License.  Each licensee is addressed as "you".  "Licensees" and
-"recipients" may be individuals or organizations.
-
-  To "modify" a work means to copy from or adapt all or part of the work
-in a fashion requiring copyright permission, other than the making of an
-exact copy.  The resulting work is called a "modified version" of the
-earlier work or a work "based on" the earlier work.
-
-  A "covered work" means either the unmodified Program or a work based
-on the Program.
-
-  To "propagate" a work means to do anything with it that, without
-permission, would make you directly or secondarily liable for
-infringement under applicable copyright law, except executing it on a
-computer or modifying a private copy.  Propagation includes copying,
-distribution (with or without modification), making available to the
-public, and in some countries other activities as well.
-
-  To "convey" a work means any kind of propagation that enables other
-parties to make or receive copies.  Mere interaction with a user through
-a computer network, with no transfer of a copy, is not conveying.
-
-  An interactive user interface displays "Appropriate Legal Notices"
-to the extent that it includes a convenient and prominently visible
-feature that (1) displays an appropriate copyright notice, and (2)
-tells the user that there is no warranty for the work (except to the
-extent that warranties are provided), that licensees may convey the
-work under this License, and how to view a copy of this License.  If
-the interface presents a list of user commands or options, such as a
-menu, a prominent item in the list meets this criterion.
-
-  1. Source Code.
-
-  The "source code" for a work means the preferred form of the work
-for making modifications to it.  "Object code" means any non-source
-form of a work.
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-standard defined by a recognized standards body, or, in the case of
-interfaces specified for a particular programming language, one that
-is widely used among developers working in that language.
-
-  The "System Libraries" of an executable work include anything, other
-than the work as a whole, that (a) is included in the normal form of
-packaging a Major Component, but which is not part of that Major
-Component, and (b) serves only to enable use of the work with that
-Major Component, or to implement a Standard Interface for which an
-implementation is available to the public in source code form.  A
-"Major Component", in this context, means a major essential component
-(kernel, window system, and so on) of the specific operating system
-(if any) on which the executable work runs, or a compiler used to
-produce the work, or an object code interpreter used to run it.
-
-  The "Corresponding Source" for a work in object code form means all
-the source code needed to generate, install, and (for an executable
-work) run the object code and to modify the work, including scripts to
-control those activities.  However, it does not include the work's
-System Libraries, or general-purpose tools or generally available free
-programs which are used unmodified in performing those activities but
-which are not part of the work.  For example, Corresponding Source
-includes interface definition files associated with source files for
-the work, and the source code for shared libraries and dynamically
-linked subprograms that the work is specifically designed to require,
-such as by intimate data communication or control flow between those
-subprograms and other parts of the work.
-
-  The Corresponding Source need not include anything that users
-can regenerate automatically from other parts of the Corresponding
-Source.
-
-  The Corresponding Source for a work in source code form is that
-same work.
-
-  2. Basic Permissions.
-
-  All rights granted under this License are granted for the term of
-copyright on the Program, and are irrevocable provided the stated
-conditions are met.  This License explicitly affirms your unlimited
-permission to run the unmodified Program.  The output from running a
-covered work is covered by this License only if the output, given its
-content, constitutes a covered work.  This License acknowledges your
-rights of fair use or other equivalent, as provided by copyright law.
-
-  You may make, run and propagate covered works that you do not
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LICENSES/LGPL-3.0

@@ -1,179 +0,0 @@
-Valid-License-Identifier: LGPL-3.0
-Valid-License-Identifier: LGPL-3.0+
-SPDX-URL: https://spdx.org/licenses/LGPL-3.0-or-later.html
-Usage-Guide:
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-  For 'GNU Library General Public License (LGPL) version 3.0 only' use:
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-  For 'GNU Library General Public License (LGPL) version 3.0 or any later
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-    SPDX-License-Identifier: LGPL-3.0-or-later
-License-Text:
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-                   GNU LESSER GENERAL PUBLIC LICENSE
-                       Version 3, 29 June 2007
-
- Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
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@@ -1,210 +0,0 @@
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Makefile

@@ -0,0 +1,235 @@
+# do not change below this line#
+
+# Include common definitions
+include Makefile.include
+
+INSTALLROOT	?=	$(PWD)
+BINDIR	?=	$(INSTALLROOT)/bin
+DOCDIR	?=	$(INSTALLROOT)/manual/docs
+LIBDIR	?=	$(INSTALLROOT)/bin
+INCDIR	?=	$(INSTALLROOT)/include
+DETAILDOC	?=	$(INSTALLROOT)/docs
+ 
+WD				=	$(shell pwd)
+LIBRARYDIR		=	$(WD)/slsDetectorSoftware
+LIBRARYRXRDIR 		= 	$(WD)/slsReceiverSoftware
+CLIENTDIR		=	$(LIBRARYDIR)/slsDetectorClient
+GUIDIR			=	$(WD)/slsDetectorGui
+RECEIVERDIR		=	$(LIBRARYRXRDIR)
+CALWIZDIR		=	$(WD)/calibrationWizards
+MANDIR			=	$(WD)/manual
+CALIBDIR		=	$(WD)/slsDetectorCalibration
+MANAPIDIR		=	$(MANDIR)/manual-api
+
+TABSPACE		:=	"\t"
+
+ 
+INCLUDES=-I. -I$(LIBRARYDIR)/commonFiles -I$(LIBRARYDIR)/slsDetector -I$(LIBRARYDIR)/usersFunctions -I$(LIBRARYDIR)/multiSlsDetector -I$(LIBRARYDIR)/slsDetectorUtils -I$(LIBRARYDIR)/slsDetectorCommand -I$(LIBRARYDIR)/slsDetectorAnalysis -I$(LIBRARYDIR)/slsReceiverInterface  -I$(LIBRARYRXRDIR)/include -I$(LIBRARYDIR)/threadFiles -I$(LIBRARYDIR)/sharedMemory -I$(ASM)
+
+INCLUDESRXR += -I. -I$(LIBRARYRXRDIR)/include -I$(CALIBDIR) -I$(ASM) 
+#LIBFLAGRXR += 
+
+$(info )
+$(info #######################################)
+$(info #   In slsDetectorsPackage Makefile   #)
+$(info #######################################)
+$(info )
+
+
+.PHONY: all nonstatic static lib libreceiver textclient receiver gui stextclient sreceiver
+
+#all: lib textclient  receiver gui 
+all: textclient  receiver gui 
+
+nonstatic: lib libreceiver textclient receiver  gui 
+
+static: lib  libreceiver stextclient sreceiver gui 
+
+
+lib:
+	cd $(LIBRARYDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
+
+libreceiver:
+	cd $(LIBRARYRXRDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+
+
+stextclient: slsDetectorClient_static
+
+slsDetectorClient: textclient
+
+slsDetectorClient_static: #lib
+	cd  $(CLIENTDIR) && $(MAKE) static_clients FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+		
+textclient: #lib
+	cd  $(CLIENTDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+	
+slsReceiver: receiver
+
+slsReceiver_static: receiver
+
+receiver: #libreceiver
+#	cd  $(RECEIVERDIR) && $(MAKE) receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+	cd  $(RECEIVERDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+	cd  $(MANAPIDIR) && $(MAKE) slsMultiReceiver
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+		
+sreceiver: #libreceiver
+	cd  $(RECEIVERDIR) && $(MAKE)  static_receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+
+slsDetectorGUI: #lib
+	cd  $(GUIDIR) && $(MAKE) DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' INCLUDES='$(INCLUDES)' LDFLAGDET='$(LDFLAGDETONLY)' LIBDIR='$(LIBDIR)'
+	@echo ""
+	@echo "#######################################"
+	@echo "# Back in slsDetectorPackage Makefile #"
+	@echo "#######################################"
+	@echo ""
+	
+calWiz: 
+	cd  $(CALWIZDIR) && $(MAKE)  DESTDIR=$(BINDIR) #FLAGS=$(FLAGS)  LDFLAGDET=$(LDFLAGDET) INCLUDES=$(INCLUDES)
+
+
+
+gui: slsDetectorGUI
+
+
+doc:
+	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
+	cd manual && make all DESTDIR=$(DOCDIR)
+
+htmldoc:
+	make doc
+	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
+	cd manual && make html DESTDIR=$(DOCDIR)
+	
+detaildoc: createdocs docspdf docshtml removedocs
+
+createdocs: $(LIBRARYDIR)/doxy.config
+	doxygen $(LIBRARYDIR)/doxy.config	
+
+docspdf: 
+	cd slsDetectorPackageDocs/latex && make 
+	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
+	$(shell test -d $(DETAILDOC)/pdf || mkdir -p $(DETAILDOC)/pdf)
+	mv slsDetectorPackageDocs/latex/refman.pdf $(DETAILDOC)/pdf/slsDetectorPackageDocs.pdf
+
+docshtml: 
+	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
+	$(shell test -d $(DETAILDOC)/html || mkdir -p $(DETAILDOC)/html)
+	$(shell test -d $(DETAILDOC)/html/slsDetectorPackageDocs && rm -r $(DETAILDOC)/html/slsDetectorPackageDocs)
+	mv slsDetectorPackageDocs/html $(DETAILDOC)/html/slsDetectorPackageDocs
+	
+removedocs:
+	rm -rf 	slsDetectorPackageDocs;
+
+
+clean:
+	cd $(BINDIR) && rm -rf sls_detector_* slsDetectorGui slsReceiver angularCalibrationWizard energyCalibrationWizard 
+	cd $(LIBDIR) && rm -rf libSlsDetector.so libSlsDetector.a libSlsReceiver.so libSlsReceiver.a 
+	cd $(LIBRARYDIR) && $(MAKE) clean 
+	cd $(LIBRARYRXRDIR) && $(MAKE) clean 
+	cd $(CLIENTDIR) && $(MAKE) clean
+	cd $(GUIDIR) && $(MAKE) clean
+	cd $(CALWIZDIR) && $(MAKE) clean
+	cd manual && $(MAKE) clean
+	cd $(DOCDIR) && rm -rf * 
+	rm -rf 	slsDetectorPackageDocs;
+	rm -rf $(DETAILDOC)
+	rm -rf $(MANAPIDIR)/slsMultiReceiver
+
+
+#install_lib: 
+#	cd $(LIBRARYDIR) && $(MAKE) install DESTDIR=$(LIBDIR) INCLUDES=$(INCLUDES)
+#	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR)
+
+mythen_virtual:
+	cd $(LIBRARYDIR) && $(MAKE) mythenVirtualServer DESTDIR=$(BINDIR)
+
+
+gotthard_virtual:
+	cd $(LIBRARYDIR) && $(MAKE) gotthardVirtualServer DESTDIR=$(BINDIR)
+
+
+install_client: textclient slsReceiver
+
+install_gui: gui
+
+confinstall:
+	make conf;\
+	make install
+
+install_lib: 
+	make lib;\
+	make libreceiver; \
+	make textclient; \
+	make slsReceiver; \
+	make doc; \
+	make htmldoc; \
+	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR); \
+	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
+
+install: 
+	make install_lib; \
+	make gui; \
+	make calWiz; \
+	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);\
+	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
+
+conf:
+	set -e; \
+	. ./configure; \
+	@echo "INSTALLROOT is $(INSTALLROOT)"
+	@echo "BINDIR is $(BINDIR)"
+	@echo "LIBDIR is $(LIBDIR)"
+	@echo "INCDIR is $(INCDIR)"
+	@echo "DOCDIR is $(DOCDIR)"
+
+
+help:
+	@echo "Targets:"
+	@echo "make all 		compile library,  text clients, data reciever"
+	@echo "make lib 		compile library"
+	@echo "make libreceiver 		compile receiver library"
+	@echo "make textclient		compile the slsDetectorClient dynamically linking the libraries"
+	@echo "make stextclient 		compile slsDetectorClient statically linking the libraries"
+	@echo "make receiver		compile the slsReciever dynamically linking the libraries"
+	@echo "make sreceiver		compile the slsReciever statically linking the libraries"
+	@echo "make gui			compile slsDetectorGUI - requires a working Qt4 and Qwt installation"
+	@echo "make calWiz 		compile the calibration wizards - requires a working Root installation"
+	@echo "make doc			compile pdf documentation"
+	@echo "make htmldoc		compile html (and pdf) documentation"
+	@echo "make install_lib         installs the libraries, the text clients, the documentation and the includes for the API"
+	@echo "make install             installs all software, including the gui, the cal wizards and the includes for the API"
+	@echo "make confinstall         installs all software, including the gui, the cal wizards and the includes for the API, prompting for the install paths"
+	@echo "make clean              	remove object files and executables"
+	@echo "make help               	lists possible targets"
+	@echo ""
+	@echo ""
+	@echo "Makefile variables"
+	@echo "DEBUG=1,2		 set debug level to 1 (VERBOSE) or 2 (VERYVERBOSE)"
+	@echo ""
+	@echo ""
+	@echo "Variables -  to change them run <source configure> :"
+	@echo "INSTALLROOT=<yourdir>:    installation root di	r, default $PWD"
+	@echo "BINDIR=<yourbin>:         binary installation dir below INSTALLROOT, default bin"
+	@echo "LIBDIR=<yourlib>:         library installation dir below INSTALLROOT, default lib"
+	@echo "INCDIR=<yourincludes>:    header installation dir below INSTALLROOT, default include"
+	@echo "DOCDIR=<yourdoc>:         documentation installation dir below INSTALLROOT, default doc"

Makefile.include

@@ -0,0 +1,58 @@
+##############################################################
+# Generic 
+##############################################################
+
+CC = g++
+CXX = $(CC)
+ASM=$(shell echo "/lib/modules/`uname -r`/build/include")
+LDFLAGDETONLY = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector 
+LDFLAGDET = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread
+LDFLAGRXR = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread
+FLAGS= -Wall  -pthread  #-DEIGER_DEBUG2
+# -DVERBOSE 
+
+# Setting up the verbose flags
+ifeq ($(DEBUG),1)
+     FLAGS = -Wall -DVERBOSE
+endif
+ifeq ($(DEBUG),2)
+     FLAGS = -Wall -DVERYVERBOSE
+endif
+
+##############################################################
+# HDF5 specific. Set this to yes, if you want to compile
+# HDF5 code: in this case, you need HDF5 libraries
+##############################################################   
+
+HDF5 = no
+HDF5_DIR = /opt/hdf5v1.10.0
+
+ifeq ($(HDF5),yes)
+	LDFLAGRXR = -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L$(HDF5_DIR)/lib  -Wl,-rpath=$(HDF5_DIR)/lib -lhdf5 -lhdf5_cpp -lsz -lz -DHDF5C -L/usr/lib64/ -pthread
+	INCLUDESRXR = -I$(HDF5_DIR)/include
+endif	
+
+
+##############################################################
+# ROOTSLS specific. Set this to yes, if you want to compile
+# ROOTSLS code: in this case, you need also root libraries
+##############################################################   
+
+ROOTSLS = no
+
+ROOTFLAGS = $(shell root-config --cflags --glibs) -DMYROOT1   #-DALLFILE_DEBUG #-DMYROOT1 
+
+ifeq ($(ROOTSLS),yes)
+     LDFLAGRXR = -L$(LIBDIR) -lSlsReceiver $(ROOTFLAGS) -DROOTSLS
+endif
+
+
+define colorecho
+      @tput setaf 6
+      @echo $1
+      @tput sgr0
+endef
+
+
+
+

README.md

@@ -1,307 +1,91 @@
-## Dependencies
-Before building from source make sure that you have the [dependencies](https://slsdetectorgroup.github.io/devdoc/dependencies.html) installed. If installing using conda, conda will manage the dependencies. Avoid also installing dependency packages with pip. 
+### Documentation
+Detailed documentation can be found on the [official site.](https://www.psi.ch/detectors/users-support)
 
-## Documentaion
-Detailed documentation including installation can be found in the [software wiki](https://slsdetectorgroup.github.io/devdoc/index.html).
+### Binaries
+Documentation to obtain the binaries via the conda package is available for [lib](https://github.com/slsdetectorgroup/sls_detector_lib) and [gui](https://github.com/slsdetectorgroup/sls_detector_gui)
 
-List of releases can be found on the [official site](https://www.psi.ch/en/lxn/software-releases).
-
-Firmware compatiblity can be found in [firmware page](https://github.com/slsdetectorgroup/slsDetectorFirmware)
-
-## Installation
-
-The slsDetectorPackage provides core detector software implemented in C++, along with Python bindings packaged as the slsdet Python extension module. Choose the option that best fits your environment and use case.
-
-1. **Install pre-built binaries using conda (Recommended)**: Install pre-built binaries for the C++ client, receiver, GUI and the Python API (`slsdet`), simplifying setup across platforms.
-
-2. **Pip**: Install only the Python extension module, either by downloading the pre-built library from PyPI or by building the extension locally from source. Available only from v9.2.0 onwards.
-
-3. **Build from source**: Compile the entire package yourself, including both the C++ core and the Python bindings, for maximum control and customization. However, make sure that you have the dependencies installed. If installing using conda, conda will manage the dependencies. Avoid installing packages with pip and conda simultaneously.
-
-### 1. Install pre-built binaries using conda (Recommended)
-Conda is not only useful to manage python environments but can also
-be used as a user space package manager. Dates in the tag (for eg. 2020.07.23.dev0) 
-are from the developer branch. Please use released tags for stability.
-
-We have three different packages available:
-* **slsdetlib** Shared libraries and command line utilities 
-* **slsdetgui** GUI
-* **slsdet** Python bindings
-* **moenchzmq** Moench
+### Source code
+One can also obtain the source code from this repository and compile while realizing the setup dependencies as required.
+```
+git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git
 
 ```
-#Add channels for dependencies and our library
-conda config --add channels conda-forge
-conda config --add channels slsdetectorgroup
-conda config --set channel_priority strict
+#### Setup dependencies 
+* Gui Client <br>
+Requirements: Qt 4.8 and Qwt 6.0
+```
+    export QTDIR=/usr/local/Trolltech/
+    export QWTDIR=/usr/local/qwt-6.0.1/
+```
+If either of them does not exist, the GUI client will not be built.
 
-#create and activate an environment with our library
-#replace 6.1.1 with the required tag
-conda create -n myenv slsdetlib=6.1.1
-conda activate myenv
-
-#ready to use
-sls_detector_get exptime
-etc ...
+* Advanced user Calibration wizards<br>
+Requirements: ROOT
+```
+    export ROOTSYS=/usr/local/root-5.34
 ```
 
-```
-# List available versions
-# lib and binaries
-conda search slsdetlib
-# python
-conda search slsdet
-# gui
-conda search slsdetgui
-# moench
-conda search moenchzmq
-```
+#### Compilation 
 
-## 2. Pip
-The Python extension module `slsdet` can be installed using pip. This is available from v9.2.0 onwards.
+Compiling can be done in two ways.
 
-```
-#Install the Python extension module from PyPI
-pip install slsdet
+**1. Compile using script cmk.sh**<br>
 
-# or install the python extension locally from source
-git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 9.2.0
-cd slsDetectorPackage
-pip install .
-```
+After compiling, the libraries and executables will be found in `slsDetectorPackage/build/bin` directory<br>
 
-## 3. Build from source
-
-### 3.1. Download Source Code from github
-```
-git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 7.0.0
-```
-
-> **Note:** For v6.x.x of slsDetectorPackage and older, refer [pybind11 notes on cloning](#Pybind-and-Zeromq).
-
-
-### 3.2. Build from source
-
-One can either build using cmake or use the in-built cmk.sh script.
-
-### 3.2.1. Build using CMake
-
-```
-# outside slsDetecorPackage folder
-mkdir build && cd build
-
-# configure & generate Makefiles using cmake
-# by listing all your options (alternately use ccmake described below)
-# cmake3 for some systems
-cmake ../slsDetectorPackage -DCMAKE_INSTALL_PREFIX=/your/install/path
-
-# compiled to the build/bin directory
-make -j12 #or whatever number of cores you are using to build
-
-# install headers and libs in /your/install/path directory
-make install
-```
-
-Instead of the cmake command, one can use ccmake to get a list of options to configure and generate Makefiles at ease.
-
-
-```
-# ccmake3 for some systems
-ccmake ..
+Usage: [-c] [-b] [-h] [-d HDF5 directory] [-j]<br>
+ * -[no option]: only make<br>
+ * -c: Clean<br>
+ * -b: Builds/Rebuilds CMake files normal mode<br>
+ * -h: Builds/Rebuilds Cmake files with HDF5 package<br>
+ * -d: HDF5 Custom Directory<br>
+ * -t: Build/Rebuilds only text client<br>
+ * -r: Build/Rebuilds only receiver<br>
+ * -g: Build/Rebuilds only gui<br>
+ * -j: Number of threads to compile through<br>
+ * -e: Debug mode
  
-# choose the options
-# first press [c] - configure (unil you see [g])
-# then press [g] - generate
+Basic Option:
+./cmk.sh -b
+ 
+For only make:
+./cmk.sh
+
+For make clean;make:
+./cmk.sh -c
+
+For using hdf5 without custom dir /blabla:
+./cmk.sh -h -d /blabla
+
+For rebuilding cmake without hdf5 
+./cmk.sh -b
+
+For using multiple cores to compile faster:
+./cmk.sh -j9<br>
+
+
+For rebuilding only certain sections<br>
+./cmk.sh -tg #only text client and gui<br>
+./cmk.sh -r #only receiver<br>
+
+
+**2. Compile without script**<br>
+Use cmake to create out-of-source builds, by creating a build folder parallel to source directory.
+```
+    $ cd ..
+    $ mkdir slsDetectorPackage-build
+    $ cd slsDetectorPackage-build
+    $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=OFF 
+    $ make
 ```
 
-|Example cmake options|Comment|
-|---|---|
-| -DSLS_USE_PYTHON=ON            | Python                                 |   
-| -DPython_FIND_VIRTUALENV=ONLY  | Python from only the conda env         | 
-| -DSLS_USE_GUI=ON               | GUI                                    |
-| -DSLS_USE_HDF5=ON              | HDF5                                   |
-| -DSLS_USE_SIMULATOR=ON         | Simulator                              |
-
-> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for cmake option to hint library location](#Pybind-and-Zeromq).
-
-### 3.2.2. Build using in-built cmk.sh script
-
+Use the following as an example to compile statically and using specific hdf5 folder
 ```
-The binaries are generated in slsDetectorPackage/build/bin directory.
-
-Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i]
-[-j <Number of threads>] [-k <CMake command>] [-l <Install directory>]
-[-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]
--[no option]: only make
--b: Builds/Rebuilds CMake files normal mode
--c: Clean
--d: HDF5 Custom Directory
--e: Debug mode
--g: Build/Rebuilds gui
--h: Builds/Rebuilds Cmake files with HDF5 package
--i: Builds tests
--j: Number of threads to compile through
--k: CMake command
--l: Install directory
--m: Manuals
--n: Manuals without compiling doxygen (only rst)
--p: Builds/Rebuilds Python API
--r: Build/Rebuilds only receiver
--s: Simulator
--t: Build/Rebuilds only text client
--u: Chip Test Gui
--z: Moench zmq processor
-
-
-# display all options
-./cmk.sh -?
-
-# new build and compile in parallel (recommended basic option):
-./cmk.sh -cbj5
-
-# new build, python and compile in parallel:
-./cmk.sh -cbpj5
-
-#For rebuilding only certain sections
-./cmk.sh -tg #only text client and gui
-./cmk.sh -r #only receiver
+    $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=ON
+ ```  
+After compiling, the libraries and executables will be found at `bin` directory
 ```
-
-> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for cmk script option to hint library location](#Pybind-and-Zeromq).
-
-### 3.3. Build on old distributions using conda
-
-If your linux distribution doesn't come with a C++17 compiler (gcc>8) then 
-it's possible to install a newer gcc using conda and build the slsDetectorPackage
-using this compiler
-
+    $ ls bin/
+    gui_client  libSlsDetector.a  libSlsDetector.so  libSlsReceiver.a  libSlsReceiver.so
+    sls_detector_acquire  sls_detector_get  slsDetectorGui  sls_detector_help  sls_detector_put  slsReceiver slsMultiReceiver
 ```
-#Create an environment with the dependencies
-conda create -n myenv gxx_linux-64 cmake zmq
-conda activate myenv
-
-# outside slsDetecorPackage folder
-mkdir build && cd build
-cmake ../slsDetectorPackage -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
-make -j12
-```
-
-> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for dependencies for conda](#Pybind-and-Zeromq).
-
-
-### 3.4. Build slsDetectorGui (Qt5)
-
-1. Using pre-built binary on conda
-```
-conda create -n myenv slsdetgui=7.0.0
-conda activate myenv
-```
-
-2. Using system installation on RHEL7
-```
-yum install qt5-qtbase-devel.x86_64
-yum install qt5-qtsvg-devel.x86_64 
-```
-
-3. Using system installation on RHEL8
-```
-yum install qt5-qtbase-devel.x86_64
-yum install qt5-qtsvg-devel.x86_64 
-yum install expat-devel.x86_64
-```
-
-4. Using conda
-```
-#Add channels for dependencies and our library
-conda config --add channels conda-forge
-conda config --add channels slsdetectorgroup
-conda config --set channel_priority strict
-
-# create environment to compile
-# on rhel7
-conda create -n slsgui zeromq gxx_linux-64 gxx_linux-64 mesa-libgl-devel-cos6-x86_64 qt
-# on fedora or newer systems
-conda create -n slsgui zeromq qt
-
-# when using conda compilers, would also need libgl, but no need for it on fedora unless maybe using it with ROOT
-
-# activate environment
-conda activate slsgui
-
-# compile with cmake outside slsDetecorPackage folder
-mkdir build && cd build
-cmake ../slsDetectorPackage -DSLS_USE_GUI=ON
-make -j12
-
-# or compile with cmk.sh
-cd slsDetectorPackage
-./cmk.sh -cbgj9
-```
-
-> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for dependencies for conda](#Pybind-and-Zeromq).
-
-### 3.5. Build documentation from package
-The documentation for the slsDetectorPackage is build using a combination 
-of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
-is to use conda 
-
-```
-conda create -n myenv python=3.12 sphinx sphinx_rtd_theme breathe doxygen numpy
-```
-
-```
-# using cmake or ccmake to enable DSLS_BUILD_DOCS
-# outside slsDetecorPackage folder
-mkdir build && cd build
-cmake ../slsDetectorPackage -DSLS_BUILD_DOCS=ON
-
-make docs # generate API docs and build Sphinx RST
-make rst # rst only, saves time in case the API did not change
-```
-
-
-
-## 4. Pybind and Zeromq
-
-### Pybind11 for Python
-**v8.0.0+**:
-pybind11 is built
-* by default from tar file in repo (libs/pybind/v2.1x.0.tar.gz)
-* or use advanced option SLS_FETCH_PYBIND11_FROM_GITHUB [link].
-   * v9.0.0+: pybind11 (v2.13.6)
-   * v8.x.x : pybind11 (v2.11.0)
-
-**v7.x.x**:
-pybind11 packaged into ‘libs/pybind’. No longer a submodule. No need for “recursive” or “submodule update”.
-
-**Older versions**:
-pybind11 is a submodule. Must be cloned using “recursive” and updated when switching between versions using the following commands.
-
-```
-# Note: Only for v6.x.x versions and older
-
-# clone using recursive to get pybind11 submodule
-git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
-
-# update submodule when switching between releases
-cd slsDetectorPackage
-git submodule update --init
-```
-
-### Zeromq
-**v8.0.0+**:
-zeromq (v4.3.4) is built
-* by default from tar file in repo (libs/libzmq/libzmq-4.3.4.tar.gz)
-* or use advanced option SLS_FETCH_ZMQ_FROM_GITHUB [link].
-
-**v7.x.x and older**:
-zeromq-devel must be installed and one can hint its location using
-* cmake option:’-DZeroMQ_HINT=/usr/lib64’ or
-* option ‘-q’ in cmk.sh script: : ./cmk.sh -cbj5 -q /usr/lib64
-* ‘zeromq’ dependency added when installing using conda
-
-
-## Support
-    dhanya.thattil@psi.ch
-    erik.frojdh@psi.ch
-    alice.mazzoleni@psi.ch

RELEASE.txt

@@ -1,229 +1,508 @@
-SLS Detector Package Major Release x.x.x released on xx.xx.202x
-===============================================================
-
-This document describes the differences between vx.x.x and vx.0.2   
+SLS Detector Package 4.0.0 released on 27.09.2018
+=================================================
 
 
 
-    CONTENTS
-    --------
-    1           New, Changed or Resolved Features
-        1.1     Compilation
-        1.2     Callback
-        1.3     Python
-        1.4     Client
-        1.5     Detector Server
-        1.6     Simulator
-        1.7     Receiver
-        1.8     Gui
-    2           On-board Detector Server Compatibility
-    3           Firmware Requirements
-    4           Kernel Requirements
-    5           Download, Documentation & Support
+INTRODUCTION
+
+	This document describes the differences between 4.0.0 and 3.1.4 releases.
+
+	Download
+	--------
+	
+	The Source Code (Default C++ API):
+		 https://github.com/slsdetectorgroup/slsDetectorPackage
+		 
+	The Conda Lib Package:
+		https://github.com/slsdetectorgroup/sls_detector_lib
+		
+	The Conda GUI Package:
+		https://github.com/slsdetectorgroup/sls_detector_gui	
+		
+	The Python Interface (including the package):
+    	https://github.com/slsdetectorgroup/sls_detector
+	
+	
+	Documentation
+	-------------
+	
+	Manual (HTML & PDF):
+		https://www.psi.ch/detectors/documentation
+		slsDetectorPackage/manual/docs/
+		
+	Command Line Documentation:
+		manual/docs/html/slsDetectorClientDocs/index.html
+		manual/docs/pdf/slsDetectorClientDocs.pdf
+		
+	C++ API Documentation:
+		manual/docs/html/slsDetectorUsersDocs/index.html
+		manual/docs/pdf/slsDetectorUsersDocs.pdf
+		
+	C++ API Example:
+		manual/manual-api/mainClient.cpp
+		manual/manual-api/mainReceiver.cpp
+		
+	Python API Documentation:
+		https://slsdetectorgroup.github.io/sls_detector/
+		
+	Further Documentation:
+		https://www.psi.ch/detectors/users-support
+		
+	
+	Support
+	-------
+
+	General Software related:
+		dhanya.thattil@psi.ch
+		anna.bergamaschi@psi.ch
+		
+	Python related:
+		erik.frojdh@psi.ch
 
 
 
-1 New, Changed or Resolved Features
-=====================================
+CONTENTS
 
-Building shared libraries is disabled by default. If you need to link 
-against any of the libSls*.so libraries, you can enable this by passing
- -DSLS_BUILD_SHARED_LIBRARIES=ON to CMake.
- 
-Added SLS_USE_SYSTEM_ZMQ option (default OFF) to use the libzmq of the host
-instead of the one included in our repo. 
-
-Experimental support for building the detector client (including python bindings) on macOS
-
-2  On-board Detector Server Compatibility
-==========================================
-
-
-    Eiger       10.0.0
-    Jungfrau    10.0.0
-    Mythen3     10.0.0
-    Gotthard2   10.0.0
-    Moench      10.0.0
-  
-
-    On-board Detector Server Upgrade
-    --------------------------------
-
-    From v6.1.0 (without tftp):
-        update only on-board detector server
-            Using command 'updatedetectorserver'
-
-
-        udpate both on-board detector server and firmware simultaneously
-            Using command 'update'
-
-    Instructions available at
-        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
+	1.	Firmware Requirements
+	2.	Changes in User Interface
+	3.	New/Modified Commands
+	4.	Other New Features
+	5.	Resolved Issues
+	6.	Known Issues
+	7.	Next Major Release Plans
 
 
 
-
-3 Firmware Requirements
+1. Firmware Requirements
 ========================
 
-    Eiger       02.10.2023 (v32)                    (updated in 7.0.3)
-    
-    Jungfrau    09.02.2025 (v1.6, HW v1.0)          (updated in 9.1.0)
-                08.02.2025 (v2.6, HW v2.0)          (updated in 9.1.0)
-
-    Mythen3     13.11.2024 (v2.0)                   (updated in 9.0.0)
-
-    Gotthard2   03.10.2024 (v1.0)                   (updated in 9.0.0)
-
-    Moench      26.10.2023 (v2.0)                   (updated in 8.0.2)
-
-
-    Detector Upgrade
-    ----------------
-
-    The following can be upgraded remotely:
-
-    Eiger      via bit files
-    Jungfrau   via command <.pof>
-    Mythen3    via command <.rbf>
-    Gotthard2  via command <.rbf>
-    Moench     via command <.pof>
-
-    Except Eiger, 
-        upgrade 
-            Using command 'programfpga' or
-
-        udpate both on-board detector server and firmware simultaneously
-            Using command 'update'
-
-
-    Instructions available at
-        https://slsdetectorgroup.github.io/devdoc/firmware.html
-
-
-
-
-4 Kernel Requirements
-======================
-
-
-    Blackfin 
-    --------
-    Latest version: Fri Oct 29 00:00:00 2021
-    
-    Older ones will work, but might have issues with programming firmware via
-    the package.
-
-
-    Nios
-    -----
-    Compatible version: Mon May 10 18:00:21 CEST 2021
-
-
-    Kernel Upgrade
-    ---------------
-    Eiger   via bit files
-    Others  via command
-
-    Commands: udpatekernel, kernelversion
-    Instructions available at
-        https://slsdetectorgroup.github.io/devdoc/commandline.html
-        https://slsdetectorgroup.github.io/devdoc/detector.html
-        https://slsdetectorgroup.github.io/devdoc/pydetector.html
-
-
-
-
-5 Download, Documentation & Support
-====================================
-
-    Download
-    --------
-    
-    The Source Code:
-         https://github.com/slsdetectorgroup/slsDetectorPackage
-            
-    Documentation
-    -------------
-    
-    Installation:
-        https://slsdetectorgroup.github.io/devdoc/installation.html
-
-    Quick Start Guide:
-        https://slsdetectorgroup.github.io/devdoc/quick_start_guide.html
-
-    Firmware Upgrade:
-        https://slsdetectorgroup.github.io/devdoc/firmware.html
-
-    Detector Server upgrade:
-        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
-
-    Detector Simulators:
-        https://slsdetectorgroup.github.io/devdoc/virtualserver.html
-
-    Consuming slsDetectorPackage:
-        https://slsdetectorgroup.github.io/devdoc/consuming.html
+    	Gotthard
+    	========   
+    	Minimum compatible version  : 11.01.2013
+    	Latest version              : 08.02.2018 (50um and 25um Master)
+                                      09.02.2018 (25 um Slave) 
+    	Eiger
+    	=====  
+    	Minimum compatible version  : 22
+    	Latest version              : 22
         
-    Software Architecture
-        https://slsdetectorgroup.github.io/devdoc/softwarearchitecture.html
+    	Jungfrau
+    	========       
+    	Minimum compatible version  : 15.06.2018
+    	Latest version              : 15.06.2018
 
-    Set up commands in config file
-        https://slsdetectorgroup.github.io/devdoc/configcommands.html
-        
-    Image Size and Output Characteristics
-        https://slsdetectorgroup.github.io/devdoc/dataformat.html
-
-    API Examples:
-        https://github.com/slsdetectorgroup/api-examples
-
-    Command Line Documentation:
-        https://slsdetectorgroup.github.io/devdoc/commandline.html
-
-    C++ API Documentation:
-        https://slsdetectorgroup.github.io/devdoc/detector.html
-       
-    C++ API Example:
-        https://slsdetectorgroup.github.io/devdoc/examples.html#
-        
-    Python API Documentation:
-        https://slsdetectorgroup.github.io/devdoc/pygettingstarted.html
-
-    Python API Example:
-        https://slsdetectorgroup.github.io/devdoc/pyexamples.html
-
-    Receivers (including custom receiver):
-        https://slsdetectorgroup.github.io/devdoc/receivers.html
-        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html
-
-    Detector UDP Header:
-        https://slsdetectorgroup.github.io/devdoc/udpheader.html
-        https://slsdetectorgroup.github.io/devdoc/udpdetspec.html
-
-    Output Data:
-        https://slsdetectorgroup.github.io/devdoc/dataformat.html
-        https://slsdetectorgroup.github.io/devdoc/fileformat.html
-        https://slsdetectorgroup.github.io/devdoc/slsreceiverheaderformat.html
-        https://slsdetectorgroup.github.io/devdoc/masterfileattributes.html
-        https://slsdetectorgroup.github.io/devdoc/binaryfileformat.html
-        https://slsdetectorgroup.github.io/devdoc/hdf5fileformat.html
-
-    slsReceiver Zmq Format:
-        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html#zmq-json-header-format
-
-    TroubleShooting:
-        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html
-        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html#receiver-pc-tuning-options
-        
-    Further Documentation:
-        https://www.psi.ch/en/detectors/documentation
-        
-    Info on Releases:
-        https://www.psi.ch/en/detectors/software
+    	
+    	Detector Upgrade
+    	================
+    	Gotthard	Cannot be upgraded remotely. Requires programming via USB blaster
+    	Eiger		Can be upgraded remotely via bit files
+    	Jungfrau	Can be upgraded remotely using sls_detector_put programfpga <pof>
+    	
+    	Instructions available at
+    	https://www.psi.ch/detectors/installation-instructions
+    	under Detector Upgrade -> [Detector Type] -> Firmware. 
+    	
+    	 
+	Please refer to the link below for more details on the firmware versions.
+	https://www.psi.ch/detectors/firmware.
+		
+
+
+2. Changes in User Interface
+============================
+	
+	Client
+	------
+	
+	1.	Shared Memory:
+	
+		POSIX shared memory has been implemented and they are typically created in
+		/dev/shm/ folder.
+		
+		A multiSlsDetector object will create a shared memory segment with naming style:
+		slsDetectorPackage_x_[_z]
+		and an slsDetector object will create a shared memory segment with naming style:
+		slsDetectorPackage_x_sls_y[_z]
+		 	
+		where
+		x is the multi detector id
+		y is the sls detector id
+		z is the environment variable SLSDETNAME, if set.
+		They can be deleted directly.
+		
+		Environment variable SLSDETNAME included for user-friendliness
+		of using 2 different detectors from the same client pc. One needn't use
+		different multi detector id if the SLSDETNAME is different for both consoles.
+		
+		Constructor will fail if shared memory size is different (different package
+		releases/detectors). Loading config file cleans shared memory.
+
+
+	2.	Exceptions in constructors:
+	
+		All constructors that have an error throws an exception. For this release,
+		this is caught within the package and interfaced as error codes or messages
+		to the users using command line or API.
+		
+		As a result:
+		- slsDetectorsUsers constructor signature now includes a success flag.
+		- If one uses multiSlsDetector, slsDetector, ZmqSocket classes directly, 
+		  catch exceptions from constructors.
+		- In future releases, the exception will be thrown 
+		  outside the package for the users to handle it.
+		  
+		  
+	3.	API Compatibility:
+	
+		Client now checks API version of Detector Server - Client and Receiver - Client
+		when connecting for the first time to detector server or receiver server
+		and the online flags have not been set in shm. 
+		
+		Upon failure, error messages will ensue and further commands will not 
+		be executed. Detector servers referred to are only for Eiger, Jungfrau and Gotthard.
+		
+		Previously, the detector server would exit on mismatched Firmware-Detector
+		server mismatch. They now wait for client to ask for compatibility check,
+		which is done the first time client connects to the detector and the
+		online flag in shm has not been set.
+		
+		
+	4.	Commands "type", "id" and "replace" are removed.
+		  
+		  
+	Receiver
+	--------
+	
+	1.	Reciever Header Structure in file writing and call back:
+	
+		sls_receiver_header structure added to sls_receiver_defs.h for image headers 
+		in file writing. 
+		
+		#define MAX_NUM_PACKETS	512
+		typedef std::bitset<MAX_NUM_PACKETS> sls_bitset;
+		typedef struct {
+			sls_detector_header detHeader;	/**< is the detector header */
+			sls_bitset packetsMask;			/**< is the packets caught bit mask */
+		} sls_receiver_header;
+		
+		It includes the detector header structure + bitmask of 512 bits, 
+		where each bit represents a packet caught. This is useful in saving time 
+		in writing to file by not padding missing packets and still retaining useful data.
+		
+		The binary and HDF5 writer version number changed from 1.0 to 2.0. 
+		The detector header version remains as 1.0.
+		
+		registerCallBackRawDataReady modified to give this structure pointer,
+		instead of individual structure member pointers.
+		
+		
+	2.	ZmqSocket class:
+	
+		If one uses ZmqSocket.h, then the json header has to be parsed outside 
+		the class to allow the user to remove the restriction in extracting all data
+		from the json header.
+
+
+	3.	Receiver Call back with modified size:
+	
+		registerCallBackRawDataModifyReady call back that is similar to the receiver 
+		registerCallBackRawDataReady has been added to allow the call back to 
+		specify an updated size of image after call back. This is in view to process
+		an image in call back (including extract only a region of the image) and 
+		provide this updated size in callback. This new resized/processed image
+		will be written to file or streamed out via zmq. This is useful in ROI
+		selection in the receiver.
+
+		This also means that the call back is now called before writing to file.
+
+
+
+3. New/Modified Commands 
+========================
+	
+	Client
+	------
+
+	1.	add (modified): 
+		appends detector to end of multi detector list.
+
+	2.	replace: 
+		sets hostname/ip address for a single detector.
+
+	3.	user: 
+		get user details from shared memory.
+
+	4.	checkdetversion: 
+		checks client version compatibility with detector server.
+
+	5.	checkrecversion: 
+		checks client version compatibility with receiver server.
+		
+	
+	Receiver
+	--------
+	
+	1.	rx_zmqip:	
+		sets/gets the zmq (TCP) ip of the receiver from where data is streamed 
+		out from. (Eg. to the gui or intermediate process). By default, it is 
+		the same as the zmqip.
+	
+	2.	zmqip: 
+		sets/gets the zmq (TCP) ip, where client listens to, to reconstuct images. 
+		(Eg. from receiver or intermediate process). By default, it is the same 
+		as rx_zmqip.
+	  		 	
+	3.	rx_jsonaddheader:
+		sets/gets additional json header to be streamed out with the zmq from 
+		receiver. Default is empty. Eg. p rx_jsonaddheader \"what\":\"nothing\"
+		
+	4.	r_discardpolicy:
+		sets/gets the frame discard policy in the receiver. 
+		nodiscard - no discard (default), 
+		discardempty - discard only empty frames, 
+		discardpartial - discard any partial frame(fastest)
+		
+	5.	r_padding:
+		sets/gets the frame padding in the receiver. 
+		0 does not pad partial frames(fastest), 
+		1 (default) pads partial frames.
+		One can look at bitmask in the sls_receiver_header to process the unpadded
+		partial	frames later.
+		
+	6.	activate (modified):
+		Extra option added to pad or unpad images in receivers when deactivated.
+		activate i [padding option], where i is activate/deactivate	and padding 
+		option is "padding" (default) or "nopadding".
+		
+	7.	rx_udpsocksize:
+		sets/gets the UDP socket buffer size. Already attempts to set by default 
+		to 100mb, 2gb for Jungfrau. Does not remember custom values	in client 
+		shared memory, so must be initialized each time after setting receiver 
+		hostname in config file.
+		
+	8.	rx_realudpsocksize:
+		gets the actual UDP socket buffer size. Usually double the set udp socket 
+		buffer size due to kernel bookkeeping.
+	
+	9.	r_framesperfile:
+		sets/gets the frames per file in receiver. 0 means infinite or all frames 
+		in a single file. Default of Eiger changed from 2k to 10k.
+		
+
+	Eiger Specific
+	--------------
+	
+	1.	status trigger:
+		To trigger internally via software, one can use "status trigger".
+		
+	2.	subdeadtime:
+		sets/gets sub frame dead time in s in 32 bit mode. Subperiod is	set in 
+		the detector by subexptime + subdeadtime. This value is	normally a 
+		constant set by an expert catered to individual detector modules in the 
+		config file. Receiver files writes master file metadata subperiod 
+		instead of subdeadtime.
+		
+	3.	gappixels:
+		enables/disables gap pixels in system (detector & receiver). 1 sets, 
+		0 unsets. In Receiver, 4 bit gap pixels mode is not implemented, but is 
+		implemented in client data call back. Gap pixels are at module level 
+		and not at multi module level.
+				
+	4.	measuredperiod:
+		gets the measured frame period (time between last frame and the	previous 
+		one) in s. Makes sense only for acquisitions of more than 1 frame.
+		
+	5.	measuredsubperiod:
+		gets the measured subframe period (time between last subframe and the 
+		previous one) in s in 32 bit mode.
+
+	6.	flags(modified):
+		extra flags "nooverflow" (default) and "overflow" for sub images in	32 
+		bit mode. If set to overflow, it will set MSB of pixel data high if 
+		there was any saturation in any of the sub images 32 bit mode.
+		
+				
+	Jungfrau Specific
+	-----------------
+	
+	1.	storagecells:
+		sets/gets number of additional storage cells per acquisition. For very 
+		advanced users only. Range: 0-15. Default: 0. 
+		The #images = #frames * #cycles * (#storagecells +1).
+		
+	2.	storage_start:
+		sets/gets the storage cell that stores the first acquisition of the	series. 
+		For very advanced users only. Range: 0-15. Default: 15(0xf).  
+
+
+
+4. Other New Features
+=====================
+
+	Client
+	------
+	
+	1.	(Jungfrau & Gotthard) Settingsdir and caldir is removed from config file.
+		Default dacs are stored in detector server. Hence, these folders
+		are also removed from slsDetectorPackage/settingsdir. Eiger and Mythen 
+		continue to have them.
+		
+	2.	Depending on 1d position of detectors and detsizechan in config file,
+		row and column (previously xcoord and ycoord) are given to detector 
+		servers (Eiger and Jungfrau) to encode into the udp header.
+		
+	3.	(Eiger) Setting threshold energy changes such as CAL dac is irrelevant 
+		when interpolating between two energies and VRS dac is interpolated, not copied.
+		
+	4.	Users API updated with the following functions:
+		-	setReceiverFramesDiscardPolicy
+		-	setReceiverPartialFramesPadding
+		-	setReceiverFramesPerFile
+		-	sendSoftwareTrigger
+		-	setSubFrameExposureDeadTime
+		-	setSubFrameExposureTime
+		-	enableGapPixels
+		-	getMeasuredPeriod
+		-	getMeasuredSubFramePeriod
+		-	setOverflowMode
+		-	setNumberOfStorageCells
+		-	setStoragecellStart
+		-	setThresholdEnergy (overloaded)
+		-	resetFramesCaughtInReceiver
+		-	setReceiverFifoDepth
+		-	setFlowControl10G
+		-	setTenGigabitEthernet
+		-	getNMods
+		-	setReceiverDataStreamingOutIP
+		-	setClientDataStreamingInIP
+		
+	SlsReceiver
+	-----------
+	
+	1.	slsMultiReceiver executable added that creates multiple receiver child processes.
+		./slsMultiReceiver [start_tcp_port] [num_receivers] [1 for call back, 0 for none]
+		
+	2.	Default row and column (previously xcoord and ycoord) are hardcoded 
+		for missing packets. (Eiger and Jungfrau)
+		
+
+	Gui
+	---
+	
+	1.	(Jungfrau) Gain plot included. Option under 2D options in Plot tab.
+	
+	2.	Option to maintain aspect ratio
+	
+	3.	Start and Stop separated to prevent multiple click syndrome.
+	
+
+	Detector Server
+	---------------
+	
+	1. 	(Jungfrau) To use programfpga command, one must start server with -update
+		mode and then restart server without -update mode.
+	
+	2.	(Jungfrau) ASIC Timer configured at server start up and changed a few
+		startup values for firmware v0.7 such as adc phase, ADC_PORT_INVERT_VAL
+		and ADC offset half speed value.
+		
+	3.	(Jungfrau) Minimum exposure time of 50 us was implemented.
+	
+	4. 	(Eiger and Jungfrau) They can be configured to have x and y coord values
+		of the detector in their udp header.
+
+
+
+
+5. Resolved Issues
+==================
+
+	Client
+	------
+	memory leak for multi threading
+	
+	1.	Compiler flag -std=c++98 enforced. Debug flag removed.
+	
+	2.	If trimen gives different list from different detectors, it returns a -1.
+	
+	3.	Version format for each submodule of the package changed to just date YYMMDD.
+		Users class fixed to give correct version, instead of -1.
+		
+	4.	Getting settings in users class gave -1. Fixed now.
+
+	5.	(Jungfrau) Programming FPGA now creates the rawbin file from pof in tmp
+		rather than source file location (for permission issues).
+		
+	6.	(Gotthard) ROI segmentation fault fixed.
+		
+	Receiver
+	--------
+	
+	1.	Silent feature of receiver fixed.
+	
+	2. 	Socket descriptor misused earlier for success flag, instead exceptions
+		used that are handled inside the package.
+
+	3.	Global optind variable initialized to instantiate multiple receivers 
+		in same process. Also removed static members to enable this feature.
+		
+	4.	Socket buffer size attempts to set for each acquiistion and provide
+		warning if no capabilities. Warnings can be removed using instruction with
+		error provided. Default Jungfrau UDP socket buffer size if 2 GB, default is 
+		100 MB.
+		
+	5.	Refactored code a bit for performance and robustness, blocking push 
+		in buffer between listener and dataprocessor
+
+	
+	Detector Server
+	---------------
+	
+	1.	(Jungfrau) Stop server also mapped during a reset. Reading power status
+		instead of user input register for power.
+	
+	2.	(Eiger) Bug fix for saving trimbits to file (Advanced users).
+	
+	3.	(Gotthard 25um) config.txt is not read again after detector startup,
+		no matter the number of times the detector server is restarted. 
+
+	
+6. Known Issues
+===============
+
+	Receiver
+	--------
+	
+	1. 	HDF5 compression and filters are not implemented yet.
+	
+	
+	Detector Server
+	---------------
+	
+	1.	(Eiger) Registers mapped differently between firmware v20 and v22.
+		So, please ensure correct on-board server before switching between
+		firmware versions. Else one cannot ping it anymore. Will need to flash firmware
+		again to recover.
+		
+	2.	(Gotthard) To switch back to all ADC from single ADC ROI, one must take
+		even number of images for the receiver to understand complete images.
+		This will be fixed in the next firmware upgrade.
+	
+	
+	
+7. Next Major Release Plans
+===========================
+
+	Client
+	------
+	
+	1.	Exceptions thrown to the user to be handled.
+	
+	2. 	Compilation using c++11.
+	
+	3.	Support of Mythen II restricted to this major and its minor releases.
+	
+	4.	Restructuring and refactoring of client code. 
 
 
-    Support
-    -------
 
-        dhanya.thattil@psi.ch
-        erik.frojdh@psi.ch
-        alice.mazzoleni@psi.ch

VERSION

@@ -1 +0,0 @@
-0.0.0

bash_autocomplete.sh

@@ -1 +0,0 @@
-slsDetectorSoftware/generator/autocomplete/bash_autocomplete.sh

cleansharedmemory.sh

@@ -0,0 +1 @@
+rm /dev/shm/slsDetectorPackage*;

cmake/Catch.cmake

@@ -1,175 +0,0 @@
-# Distributed under the OSI-approved BSD 3-Clause License.  See accompanying
-# file Copyright.txt or https://cmake.org/licensing for details.
-
-#[=======================================================================[.rst:
-Catch
------
-
-This module defines a function to help use the Catch test framework.
-
-The :command:`catch_discover_tests` discovers tests by asking the compiled test
-executable to enumerate its tests.  This does not require CMake to be re-run
-when tests change.  However, it may not work in a cross-compiling environment,
-and setting test properties is less convenient.
-
-This command is intended to replace use of :command:`add_test` to register
-tests, and will create a separate CTest test for each Catch test case.  Note
-that this is in some cases less efficient, as common set-up and tear-down logic
-cannot be shared by multiple test cases executing in the same instance.
-However, it provides more fine-grained pass/fail information to CTest, which is
-usually considered as more beneficial.  By default, the CTest test name is the
-same as the Catch name; see also ``TEST_PREFIX`` and ``TEST_SUFFIX``.
-
-.. command:: catch_discover_tests
-
-  Automatically add tests with CTest by querying the compiled test executable
-  for available tests::
-
-    catch_discover_tests(target
-                         [TEST_SPEC arg1...]
-                         [EXTRA_ARGS arg1...]
-                         [WORKING_DIRECTORY dir]
-                         [TEST_PREFIX prefix]
-                         [TEST_SUFFIX suffix]
-                         [PROPERTIES name1 value1...]
-                         [TEST_LIST var]
-    )
-
-  ``catch_discover_tests`` sets up a post-build command on the test executable
-  that generates the list of tests by parsing the output from running the test
-  with the ``--list-test-names-only`` argument.  This ensures that the full
-  list of tests is obtained.  Since test discovery occurs at build time, it is
-  not necessary to re-run CMake when the list of tests changes.
-  However, it requires that :prop_tgt:`CROSSCOMPILING_EMULATOR` is properly set
-  in order to function in a cross-compiling environment.
-
-  Additionally, setting properties on tests is somewhat less convenient, since
-  the tests are not available at CMake time.  Additional test properties may be
-  assigned to the set of tests as a whole using the ``PROPERTIES`` option.  If
-  more fine-grained test control is needed, custom content may be provided
-  through an external CTest script using the :prop_dir:`TEST_INCLUDE_FILES`
-  directory property.  The set of discovered tests is made accessible to such a
-  script via the ``<target>_TESTS`` variable.
-
-  The options are:
-
-  ``target``
-    Specifies the Catch executable, which must be a known CMake executable
-    target.  CMake will substitute the location of the built executable when
-    running the test.
-
-  ``TEST_SPEC arg1...``
-    Specifies test cases, wildcarded test cases, tags and tag expressions to
-    pass to the Catch executable with the ``--list-test-names-only`` argument.
-
-  ``EXTRA_ARGS arg1...``
-    Any extra arguments to pass on the command line to each test case.
-
-  ``WORKING_DIRECTORY dir``
-    Specifies the directory in which to run the discovered test cases.  If this
-    option is not provided, the current binary directory is used.
-
-  ``TEST_PREFIX prefix``
-    Specifies a ``prefix`` to be prepended to the name of each discovered test
-    case.  This can be useful when the same test executable is being used in
-    multiple calls to ``catch_discover_tests()`` but with different
-    ``TEST_SPEC`` or ``EXTRA_ARGS``.
-
-  ``TEST_SUFFIX suffix``
-    Similar to ``TEST_PREFIX`` except the ``suffix`` is appended to the name of
-    every discovered test case.  Both ``TEST_PREFIX`` and ``TEST_SUFFIX`` may
-    be specified.
-
-  ``PROPERTIES name1 value1...``
-    Specifies additional properties to be set on all tests discovered by this
-    invocation of ``catch_discover_tests``.
-
-  ``TEST_LIST var``
-    Make the list of tests available in the variable ``var``, rather than the
-    default ``<target>_TESTS``.  This can be useful when the same test
-    executable is being used in multiple calls to ``catch_discover_tests()``.
-    Note that this variable is only available in CTest.
-
-#]=======================================================================]
-
-#------------------------------------------------------------------------------
-function(catch_discover_tests TARGET)
-  cmake_parse_arguments(
-    ""
-    ""
-    "TEST_PREFIX;TEST_SUFFIX;WORKING_DIRECTORY;TEST_LIST"
-    "TEST_SPEC;EXTRA_ARGS;PROPERTIES"
-    ${ARGN}
-  )
-
-  if(NOT _WORKING_DIRECTORY)
-    set(_WORKING_DIRECTORY "${CMAKE_CURRENT_BINARY_DIR}")
-  endif()
-  if(NOT _TEST_LIST)
-    set(_TEST_LIST ${TARGET}_TESTS)
-  endif()
-
-  ## Generate a unique name based on the extra arguments
-  string(SHA1 args_hash "${_TEST_SPEC} ${_EXTRA_ARGS}")
-  string(SUBSTRING ${args_hash} 0 7 args_hash)
-
-  # Define rule to generate test list for aforementioned test executable
-  set(ctest_include_file "${CMAKE_CURRENT_BINARY_DIR}/${TARGET}_include-${args_hash}.cmake")
-  set(ctest_tests_file "${CMAKE_CURRENT_BINARY_DIR}/${TARGET}_tests-${args_hash}.cmake")
-  get_property(crosscompiling_emulator
-    TARGET ${TARGET}
-    PROPERTY CROSSCOMPILING_EMULATOR
-  )
-  add_custom_command(
-    TARGET ${TARGET} POST_BUILD
-    BYPRODUCTS "${ctest_tests_file}"
-    COMMAND "${CMAKE_COMMAND}"
-            -D "TEST_TARGET=${TARGET}"
-            -D "TEST_EXECUTABLE=$<TARGET_FILE:${TARGET}>"
-            -D "TEST_EXECUTOR=${crosscompiling_emulator}"
-            -D "TEST_WORKING_DIR=${_WORKING_DIRECTORY}"
-            -D "TEST_SPEC=${_TEST_SPEC}"
-            -D "TEST_EXTRA_ARGS=${_EXTRA_ARGS}"
-            -D "TEST_PROPERTIES=${_PROPERTIES}"
-            -D "TEST_PREFIX=${_TEST_PREFIX}"
-            -D "TEST_SUFFIX=${_TEST_SUFFIX}"
-            -D "TEST_LIST=${_TEST_LIST}"
-            -D "CTEST_FILE=${ctest_tests_file}"
-            -P "${_CATCH_DISCOVER_TESTS_SCRIPT}"
-    VERBATIM
-  )
-
-  file(WRITE "${ctest_include_file}"
-    "if(EXISTS \"${ctest_tests_file}\")\n"
-    "  include(\"${ctest_tests_file}\")\n"
-    "else()\n"
-    "  add_test(${TARGET}_NOT_BUILT-${args_hash} ${TARGET}_NOT_BUILT-${args_hash})\n"
-    "endif()\n"
-  )
-
-  if(NOT ${CMAKE_VERSION} VERSION_LESS "3.10.0") 
-    # Add discovered tests to directory TEST_INCLUDE_FILES
-    set_property(DIRECTORY
-      APPEND PROPERTY TEST_INCLUDE_FILES "${ctest_include_file}"
-    )
-  else()
-    # Add discovered tests as directory TEST_INCLUDE_FILE if possible
-    get_property(test_include_file_set DIRECTORY PROPERTY TEST_INCLUDE_FILE SET)
-    if (NOT ${test_include_file_set})
-      set_property(DIRECTORY
-        PROPERTY TEST_INCLUDE_FILE "${ctest_include_file}"
-      )
-    else()
-      message(FATAL_ERROR
-        "Cannot set more than one TEST_INCLUDE_FILE"
-      )
-    endif()
-  endif()
-
-endfunction()
-
-###############################################################################
-
-set(_CATCH_DISCOVER_TESTS_SCRIPT
-  ${CMAKE_CURRENT_LIST_DIR}/CatchAddTests.cmake
-)

cmake/CatchAddTests.cmake

@@ -1,78 +0,0 @@
-# Distributed under the OSI-approved BSD 3-Clause License.  See accompanying
-# file Copyright.txt or https://cmake.org/licensing for details.
-
-set(prefix "${TEST_PREFIX}")
-set(suffix "${TEST_SUFFIX}")
-set(spec ${TEST_SPEC})
-set(extra_args ${TEST_EXTRA_ARGS})
-set(properties ${TEST_PROPERTIES})
-set(script)
-set(suite)
-set(tests)
-
-function(add_command NAME)
-  set(_args "")
-  foreach(_arg ${ARGN})
-    if(_arg MATCHES "[^-./:a-zA-Z0-9_]")
-      set(_args "${_args} [==[${_arg}]==]") # form a bracket_argument
-    else()
-      set(_args "${_args} ${_arg}")
-    endif()
-  endforeach()
-  set(script "${script}${NAME}(${_args})\n" PARENT_SCOPE)
-endfunction()
-
-# Run test executable to get list of available tests
-if(NOT EXISTS "${TEST_EXECUTABLE}")
-  message(FATAL_ERROR
-    "Specified test executable '${TEST_EXECUTABLE}' does not exist"
-  )
-endif()
-execute_process(
-  COMMAND ${TEST_EXECUTOR} "${TEST_EXECUTABLE}" ${spec} --list-test-names-only
-  OUTPUT_VARIABLE output
-  RESULT_VARIABLE result
-)
-# Catch --list-test-names-only reports the number of tests, so 0 is... surprising
-if(${result} EQUAL 0)
-  message(WARNING
-    "Test executable '${TEST_EXECUTABLE}' contains no tests!\n"
-  )
-elseif(${result} LESS 0)
-  message(FATAL_ERROR
-    "Error running test executable '${TEST_EXECUTABLE}':\n"
-    "  Result: ${result}\n"
-    "  Output: ${output}\n"
-  )
-endif()
-
-string(REPLACE "\n" ";" output "${output}")
-
-# Parse output
-foreach(line ${output})
-  set(test ${line})
-  # use escape commas to handle properly test cases with commans inside the name
-  string(REPLACE "," "\\," test_name ${test})
-  # ...and add to script
-  add_command(add_test
-    "${prefix}${test}${suffix}"
-    ${TEST_EXECUTOR}
-    "${TEST_EXECUTABLE}"
-    "${test_name}"
-    ${extra_args}
-  )
-  add_command(set_tests_properties
-    "${prefix}${test}${suffix}"
-    PROPERTIES
-    WORKING_DIRECTORY "${TEST_WORKING_DIR}"
-    ${properties}
-  )
-  list(APPEND tests "${prefix}${test}${suffix}")
-endforeach()
-
-# Create a list of all discovered tests, which users may use to e.g. set
-# properties on the tests
-add_command(set ${TEST_LIST} ${tests})
-
-# Write CTest script
-file(WRITE "${CTEST_FILE}" "${script}")

cmake/FindClangFormat.cmake

@@ -1,41 +0,0 @@
-# Find Clang format
-if(NOT ClangFormat_BIN_NAME)
-	set(ClangFormat_BIN_NAME clang-format)
-endif()
-
-# if custom path check there first
-if(ClangFormat_ROOT_DIR)
-    find_program(ClangFormat_BIN 
-        NAMES
-        ${ClangFormat_BIN_NAME}
-        PATHS
-        "${ClangFormat_ROOT_DIR}"
-        NO_DEFAULT_PATH)
-endif()
-
-find_program(ClangFormat_BIN NAMES ${ClangFormat_BIN_NAME})
-
-include(FindPackageHandleStandardArgs)
-FIND_PACKAGE_HANDLE_STANDARD_ARGS(
-    ClangFormat
-    DEFAULT_MSG 
-    ClangFormat_BIN)
-
-mark_as_advanced(
-    ClangFormat_BIN)
-
-if(ClangFormat_FOUND)
-    execute_process(COMMAND ${ClangFormat_BIN} --version
-                 WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
-                 OUTPUT_VARIABLE CLANG_VERSION_TEXT)
-    string(REGEX MATCH "([0-9]+)\\.[0-9]+\\.[0-9]+" CLANG_VERSION ${CLANG_VERSION_TEXT})
-    if((${CLANG_VERSION} GREATER "9") OR (${CLANG_VERSION} EQUAL "9"))
-        # A CMake script to find all source files and setup clang-format targets for them
-        message(STATUS "found clang-format \"${CLANG_VERSION}\" adding formatting targets")
-        include(clang-format)
-    else()
-        message(STATUS "clang-format version \"${CLANG_VERSION}\" found but need at least 9. Not setting up format targets")
-    endif()
-else()
-    message(STATUS "clang-format not found. Not setting up format targets")
-endif()

cmake/FindQwt.cmake

@@ -0,0 +1,118 @@
+# Qt Widgets for Technical Applications
+# available at http://www.http://qwt.sourceforge.net/
+#
+# The module defines the following variables:
+#  QWT_FOUND - the system has Qwt
+#  QWT_INCLUDE_DIR - where to find qwt_plot.h
+#  QWT_INCLUDE_DIRS - qwt includes
+#  QWT_LIBRARY - where to find the Qwt library
+#  QWT_LIBRARIES - aditional libraries
+#  QWT_MAJOR_VERSION - major version
+#  QWT_MINOR_VERSION - minor version
+#  QWT_PATCH_VERSION - patch version
+#  QWT_VERSION_STRING - version (ex. 5.2.1)
+#  QWT_ROOT_DIR - root dir (ex. /usr/local)
+
+#=============================================================================
+# Copyright 2010-2013, Julien Schueller
+# All rights reserved.
+# 
+# Redistribution and use in source and binary forms, with or without
+# modification, are permitted provided that the following conditions are met: 
+# 
+# 1. Redistributions of source code must retain the above copyright notice, this
+#    list of conditions and the following disclaimer. 
+# 2. Redistributions in binary form must reproduce the above copyright notice,
+#    this list of conditions and the following disclaimer in the documentation
+#    and/or other materials provided with the distribution. 
+#
+# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
+# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+# The views and conclusions contained in the software and documentation are those
+# of the authors and should not be interpreted as representing official policies, 
+# either expressed or implied, of the FreeBSD Project.
+#=============================================================================
+
+
+find_path ( QWT_INCLUDE_DIR
+  NAMES qwt_plot.h
+  HINTS $ENV{QWTDIR} $ENV{QWTDIR}/src ${QT_INCLUDE_DIR}
+  PATH_SUFFIXES qwt qwt-qt3 qwt-qt4 qwt-qt5
+)
+
+set ( QWT_INCLUDE_DIRS ${QWT_INCLUDE_DIR} )
+
+# version
+set ( _VERSION_FILE ${QWT_INCLUDE_DIR}/qwt_global.h )
+if ( EXISTS ${_VERSION_FILE} )
+  file ( STRINGS ${_VERSION_FILE} _VERSION_LINE REGEX "define[ ]+QWT_VERSION_STR" )
+  if ( _VERSION_LINE )
+    string ( REGEX REPLACE ".*define[ ]+QWT_VERSION_STR[ ]+\"(.*)\".*" "\\1" QWT_VERSION_STRING "${_VERSION_LINE}" )
+    string ( REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)" "\\1" QWT_MAJOR_VERSION "${QWT_VERSION_STRING}" )
+    string ( REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)" "\\2" QWT_MINOR_VERSION "${QWT_VERSION_STRING}" )
+    string ( REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)" "\\3" QWT_PATCH_VERSION "${QWT_VERSION_STRING}" )
+  endif ()
+endif ()
+
+
+# check version
+set ( _QWT_VERSION_MATCH TRUE )
+if ( Qwt_FIND_VERSION AND QWT_VERSION_STRING )
+  if ( Qwt_FIND_VERSION_EXACT )
+    if ( NOT Qwt_FIND_VERSION VERSION_EQUAL QWT_VERSION_STRING )
+      set ( _QWT_VERSION_MATCH FALSE )
+    endif ()
+  else ()
+    if ( QWT_VERSION_STRING VERSION_LESS Qwt_FIND_VERSION )
+      set ( _QWT_VERSION_MATCH FALSE )
+    endif ()
+  endif ()
+endif ()
+
+
+find_library ( QWT_LIBRARY
+  NAMES qwt qwt-qt3 qwt-qt4 qwt-qt5
+  HINTS $ENV{QWTDIR}/lib ${QT_LIBRARY_DIR}
+)
+
+set ( QWT_LIBRARIES ${QWT_LIBRARY} )
+
+
+# try to guess root dir from include dir
+if ( QWT_INCLUDE_DIR )
+  string ( REGEX REPLACE "(.*)/include.*" "\\1" QWT_ROOT_DIR ${QWT_INCLUDE_DIR} )
+# try to guess root dir from library dir
+elseif ( QWT_LIBRARY )
+  string ( REGEX REPLACE "(.*)/lib[/|32|64].*" "\\1" QWT_ROOT_DIR ${QWT_LIBRARY} )
+endif ()
+
+
+# handle the QUIETLY and REQUIRED arguments
+include ( FindPackageHandleStandardArgs )
+if ( CMAKE_VERSION LESS 2.8.3 )
+  find_package_handle_standard_args( Qwt DEFAULT_MSG QWT_LIBRARY QWT_INCLUDE_DIR _QWT_VERSION_MATCH )
+else ()
+  find_package_handle_standard_args( Qwt REQUIRED_VARS QWT_LIBRARY QWT_INCLUDE_DIR _QWT_VERSION_MATCH VERSION_VAR QWT_VERSION_STRING )
+endif ()
+
+
+mark_as_advanced (
+  QWT_LIBRARY 
+  QWT_LIBRARIES
+  QWT_INCLUDE_DIR
+  QWT_INCLUDE_DIRS
+  QWT_MAJOR_VERSION
+  QWT_MINOR_VERSION
+  QWT_PATCH_VERSION
+  QWT_VERSION_STRING
+  QWT_ROOT_DIR
+)

cmake/FindSphinx.cmake

@@ -1,11 +0,0 @@
-#Look for an executable called sphinx-build
-find_program(SPHINX_EXECUTABLE
-             NAMES sphinx-build sphinx-build-3.6
-             DOC "Path to sphinx-build executable")
- 
-include(FindPackageHandleStandardArgs)
- 
-#Handle standard arguments to find_package like REQUIRED and QUIET
-find_package_handle_standard_args(Sphinx
-                                  "Failed to find sphinx-build executable"
-                                  SPHINX_EXECUTABLE)

cmake/ParseAndAddCatchTests.cmake

@@ -1,203 +0,0 @@
-#==================================================================================================#
-#  supported macros                                                                                #
-#    - TEST_CASE,                                                                                  #
-#    - SCENARIO,                                                                                   #
-#    - TEST_CASE_METHOD,                                                                           #
-#    - CATCH_TEST_CASE,                                                                            #
-#    - CATCH_SCENARIO,                                                                             #
-#    - CATCH_TEST_CASE_METHOD.                                                                     #
-#                                                                                                  #
-#  Usage                                                                                           #
-# 1. make sure this module is in the path or add this otherwise:                                   #
-#    set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/cmake.modules/")              #
-# 2. make sure that you've enabled testing option for the project by the call:                     #
-#    enable_testing()                                                                              #
-# 3. add the lines to the script for testing target (sample CMakeLists.txt):                       #
-#        project(testing_target)                                                                   #
-#        set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_SOURCE_DIR}/cmake.modules/")          #
-#        enable_testing()                                                                          #
-#                                                                                                  #
-#        find_path(CATCH_INCLUDE_DIR "catch.hpp")                                                  #
-#        include_directories(${INCLUDE_DIRECTORIES} ${CATCH_INCLUDE_DIR})                          #
-#                                                                                                  #
-#        file(GLOB SOURCE_FILES "*.cpp")                                                           #
-#        add_executable(${PROJECT_NAME} ${SOURCE_FILES})                                           #
-#                                                                                                  #
-#        include(ParseAndAddCatchTests)                                                            #
-#        ParseAndAddCatchTests(${PROJECT_NAME})                                                    #
-#                                                                                                  #
-# The following variables affect the behavior of the script:                                       #
-#                                                                                                  #
-#    PARSE_CATCH_TESTS_VERBOSE (Default OFF)                                                       #
-#    -- enables debug messages                                                                     #
-#    PARSE_CATCH_TESTS_NO_HIDDEN_TESTS (Default OFF)                                               #
-#    -- excludes tests marked with [!hide], [.] or [.foo] tags                                     #
-#    PARSE_CATCH_TESTS_ADD_FIXTURE_IN_TEST_NAME (Default ON)                                       #
-#    -- adds fixture class name to the test name                                                   #
-#    PARSE_CATCH_TESTS_ADD_TARGET_IN_TEST_NAME (Default ON)                                        #
-#    -- adds cmake target name to the test name                                                    #
-#    PARSE_CATCH_TESTS_ADD_TO_CONFIGURE_DEPENDS (Default OFF)                                      #
-#    -- causes CMake to rerun when file with tests changes so that new tests will be discovered    #
-#                                                                                                  #
-# One can also set (locally) the optional variable OptionalCatchTestLauncher to precise the way    #
-# a test should be run. For instance to use test MPI, one can write                                #
-#     set(OptionalCatchTestLauncher ${MPIEXEC} ${MPIEXEC_NUMPROC_FLAG} ${NUMPROC})                 #
-# just before calling this ParseAndAddCatchTests function                                          #
-#                                                                                                  #
-#==================================================================================================#
-
-cmake_minimum_required(VERSION 2.8.8)
-
-option(PARSE_CATCH_TESTS_VERBOSE "Print Catch to CTest parser debug messages" OFF)
-option(PARSE_CATCH_TESTS_NO_HIDDEN_TESTS "Exclude tests with [!hide], [.] or [.foo] tags" OFF)
-option(PARSE_CATCH_TESTS_ADD_FIXTURE_IN_TEST_NAME "Add fixture class name to the test name" ON)
-option(PARSE_CATCH_TESTS_ADD_TARGET_IN_TEST_NAME "Add target name to the test name" ON)
-option(PARSE_CATCH_TESTS_ADD_TO_CONFIGURE_DEPENDS "Add test file to CMAKE_CONFIGURE_DEPENDS property" OFF)
-
-function(PrintDebugMessage)
-    if(PARSE_CATCH_TESTS_VERBOSE)
-            message(STATUS "ParseAndAddCatchTests: ${ARGV}")
-    endif()
-endfunction()
-
-# This removes the contents between
-#  - block comments (i.e. /* ... */)
-#  - full line comments (i.e. // ... )
-# contents have been read into '${CppCode}'.
-# !keep partial line comments
-function(RemoveComments CppCode)
-  string(ASCII 2 CMakeBeginBlockComment)
-  string(ASCII 3 CMakeEndBlockComment)
-  string(REGEX REPLACE "/\\*" "${CMakeBeginBlockComment}" ${CppCode} "${${CppCode}}")
-  string(REGEX REPLACE "\\*/" "${CMakeEndBlockComment}" ${CppCode} "${${CppCode}}")
-  string(REGEX REPLACE "${CMakeBeginBlockComment}[^${CMakeEndBlockComment}]*${CMakeEndBlockComment}" "" ${CppCode} "${${CppCode}}")
-  string(REGEX REPLACE "\n[ \t]*//+[^\n]+" "\n" ${CppCode} "${${CppCode}}")
-
-  set(${CppCode} "${${CppCode}}" PARENT_SCOPE)
-endfunction()
-
-# Worker function
-function(ParseFile SourceFile TestTarget)
-    # According to CMake docs EXISTS behavior is well-defined only for full paths.
-    get_filename_component(SourceFile ${SourceFile} ABSOLUTE)
-    if(NOT EXISTS ${SourceFile})
-        message(WARNING "Cannot find source file: ${SourceFile}")
-        return()
-    endif()
-    PrintDebugMessage("parsing ${SourceFile}")
-    file(STRINGS ${SourceFile} Contents NEWLINE_CONSUME)
-
-    # Remove block and fullline comments
-    RemoveComments(Contents)
-
-    # Find definition of test names
-    string(REGEX MATCHALL "[ \t]*(CATCH_)?(TEST_CASE_METHOD|SCENARIO|TEST_CASE)[ \t]*\\([^\)]+\\)+[ \t\n]*{+[ \t]*(//[^\n]*[Tt][Ii][Mm][Ee][Oo][Uu][Tt][ \t]*[0-9]+)*" Tests "${Contents}")
-
-    if(PARSE_CATCH_TESTS_ADD_TO_CONFIGURE_DEPENDS AND Tests)
-      PrintDebugMessage("Adding ${SourceFile} to CMAKE_CONFIGURE_DEPENDS property")
-      set_property(
-        DIRECTORY
-        APPEND
-        PROPERTY CMAKE_CONFIGURE_DEPENDS ${SourceFile}
-      )
-    endif()
-
-    foreach(TestName ${Tests})
-        # Strip newlines
-        string(REGEX REPLACE "\\\\\n|\n" "" TestName "${TestName}")
-
-        # Get test type and fixture if applicable
-        string(REGEX MATCH "(CATCH_)?(TEST_CASE_METHOD|SCENARIO|TEST_CASE)[ \t]*\\([^,^\"]*" TestTypeAndFixture "${TestName}")
-        string(REGEX MATCH "(CATCH_)?(TEST_CASE_METHOD|SCENARIO|TEST_CASE)" TestType "${TestTypeAndFixture}")
-        string(REGEX REPLACE "${TestType}\\([ \t]*" "" TestFixture "${TestTypeAndFixture}")
-
-        # Get string parts of test definition
-        string(REGEX MATCHALL "\"+([^\\^\"]|\\\\\")+\"+" TestStrings "${TestName}")
-
-        # Strip wrapping quotation marks
-        string(REGEX REPLACE "^\"(.*)\"$" "\\1" TestStrings "${TestStrings}")
-        string(REPLACE "\";\"" ";" TestStrings "${TestStrings}")
-
-        # Validate that a test name and tags have been provided
-        list(LENGTH TestStrings TestStringsLength)
-        if(TestStringsLength GREATER 2 OR TestStringsLength LESS 1)
-            message(FATAL_ERROR "You must provide a valid test name and tags for all tests in ${SourceFile}")
-        endif()
-
-        # Assign name and tags
-        list(GET TestStrings 0 Name)
-        if("${TestType}" STREQUAL "SCENARIO")
-            set(Name "Scenario: ${Name}")
-        endif()
-        if(PARSE_CATCH_TESTS_ADD_FIXTURE_IN_TEST_NAME AND TestFixture)
-            set(CTestName "${TestFixture}:${Name}")
-        else()
-            set(CTestName "${Name}")
-        endif()
-        if(PARSE_CATCH_TESTS_ADD_TARGET_IN_TEST_NAME)
-            set(CTestName "${TestTarget}:${CTestName}")
-        endif()
-        # add target to labels to enable running all tests added from this target
-        set(Labels ${TestTarget})
-        if(TestStringsLength EQUAL 2)
-            list(GET TestStrings 1 Tags)
-            string(TOLOWER "${Tags}" Tags)
-            # remove target from labels if the test is hidden
-            if("${Tags}" MATCHES ".*\\[!?(hide|\\.)\\].*")
-                list(REMOVE_ITEM Labels ${TestTarget})
-            endif()
-            string(REPLACE "]" ";" Tags "${Tags}")
-            string(REPLACE "[" "" Tags "${Tags}")
-        else()
-          # unset tags variable from previous loop
-          unset(Tags)
-        endif()
-
-        list(APPEND Labels ${Tags})
-
-        list(FIND Labels "!hide" IndexOfHideLabel)
-        set(HiddenTagFound OFF)
-        foreach(label ${Labels})
-            string(REGEX MATCH "^!hide|^\\." result ${label})
-            if(result)
-                set(HiddenTagFound ON)
-                break()
-            endif(result)
-        endforeach(label)
-        if(PARSE_CATCH_TESTS_NO_HIDDEN_TESTS AND ${HiddenTagFound} AND ${CMAKE_VERSION} VERSION_LESS "3.9")
-            PrintDebugMessage("Skipping test \"${CTestName}\" as it has [!hide], [.] or [.foo] label")
-        else()
-            PrintDebugMessage("Adding test \"${CTestName}\"")
-            if(Labels)
-                PrintDebugMessage("Setting labels to ${Labels}")
-            endif()
-
-            # Escape commas in the test spec
-            string(REPLACE "," "\\," Name ${Name})
-
-            # Add the test and set its properties
-            add_test(NAME "\"${CTestName}\"" COMMAND ${OptionalCatchTestLauncher} ${TestTarget} ${Name} ${AdditionalCatchParameters})
-            # Old CMake versions do not document VERSION_GREATER_EQUAL, so we use VERSION_GREATER with 3.8 instead
-            if(PARSE_CATCH_TESTS_NO_HIDDEN_TESTS AND ${HiddenTagFound} AND ${CMAKE_VERSION} VERSION_GREATER "3.8")
-                PrintDebugMessage("Setting DISABLED test property")
-                set_tests_properties("\"${CTestName}\"" PROPERTIES DISABLED ON)
-            else()
-                set_tests_properties("\"${CTestName}\"" PROPERTIES FAIL_REGULAR_EXPRESSION "No tests ran"
-                                                        LABELS "${Labels}")
-            endif()
-        endif()
-
-
-    endforeach()
-endfunction()
-
-# entry point
-function(ParseAndAddCatchTests TestTarget)
-    PrintDebugMessage("Started parsing ${TestTarget}")
-    get_target_property(SourceFiles ${TestTarget} SOURCES)
-    PrintDebugMessage("Found the following sources: ${SourceFiles}")
-    foreach(SourceFile ${SourceFiles})
-        ParseFile(${SourceFile} ${TestTarget})
-    endforeach()
-    PrintDebugMessage("Finished parsing ${TestTarget}")
-endfunction()

cmake/SlsAddFlag.cmake

@@ -1,64 +0,0 @@
-include(CheckCXXCompilerFlag)
-include(CheckCCompilerFlag)
-
-
-function(enable_cxx_warning flag target)
-    string(REPLACE "-W" "HAS_" flag_name ${flag})
-    check_cxx_compiler_flag(${flag} ${flag_name})
-    if(${flag_name})
-        target_compile_options(${target} INTERFACE ${flag})
-        message(STATUS "Adding: ${flag} to ${target}")
-    else()
-        message(STATUS "Flag: ${flag} not supported")
-    endif()
-endfunction()
-
-function(enable_c_warning flag target)
-    string(REPLACE "-W" "HAS_" flag_name ${flag})
-    check_c_compiler_flag(${flag} ${flag_name})
-    if(${flag_name})
-        target_compile_options(${target} INTERFACE ${flag})
-        message(STATUS "Adding: ${flag} to ${target}")
-    else()
-        message(STATUS "Flag: ${flag} not supported")
-    endif()
-endfunction()
-
-
-function(disable_cxx_warning flag target)
-    string(REPLACE "-W" "HAS_" flag_name ${flag})
-    check_cxx_compiler_flag(${flag} ${flag_name})
-
-    if(${flag_name})
-        string(REPLACE "-W" "-Wno-" neg_flag ${flag})
-        message(STATUS "Adding: ${neg_flag} to ${target}")
-        target_compile_options(${target} INTERFACE ${neg_flag})
-    else()
-        message(STATUS "Warning: ${flag} not supported no need to disable")
-    endif()
-endfunction()
-
-function(disable_c_warning flag target)
-    string(REPLACE "-W" "HAS_" flag_name ${flag})
-    check_c_compiler_flag(${flag} ${flag_name})
-    if(${flag_name})
-        string(REPLACE "-W" "-Wno-" neg_flag ${flag})
-        message(STATUS "Adding: ${neg_flag} to ${target}")
-        target_compile_options(${target} INTERFACE ${neg_flag})
-    else()
-        message(STATUS "Warning: ${flag} not supported no need to disable")
-    endif()
-endfunction()
-
-
-function(sls_disable_c_warning flag)
-    disable_c_warning(${flag} slsProjectCSettings)
-endfunction()
-
-function(sls_enable_cxx_warning flag)
-    enable_cxx_warning(${flag} slsProjectWarnings)
-endfunction()
-
-function(sls_disable_cxx_warning flag)
-    disable_cxx_warning(${flag} slsProjectWarnings)
-endfunction()

cmake/clang-format.cmake

@@ -1,47 +0,0 @@
-# A CMake script to find all source files and setup clang-format targets for them
-
-# Find all source files
-set(ClangFormat_CXX_FILE_EXTENSIONS ${ClangFormat_CXX_FILE_EXTENSIONS} *.cpp *.h *.cxx *.hxx *.hpp *.cc *.ipp *.c)
-file(GLOB_RECURSE ALL_SOURCE_FILES ${ClangFormat_CXX_FILE_EXTENSIONS})
-
-# Don't include some common build folders
-set(ClangFormat_EXCLUDE_PATTERNS ${ClangFormat_EXCLUDE_PATTERNS} "/CMakeFiles/" "cmake")
-
-# get all project files file
-foreach (SOURCE_FILE ${ALL_SOURCE_FILES}) 
-    foreach (EXCLUDE_PATTERN ${ClangFormat_EXCLUDE_PATTERNS})
-        string(FIND ${SOURCE_FILE} ${EXCLUDE_PATTERN} EXCLUDE_FOUND) 
-        if (NOT ${EXCLUDE_FOUND} EQUAL -1) 
-            list(REMOVE_ITEM ALL_SOURCE_FILES ${SOURCE_FILE})
-        endif () 
-    endforeach ()
-endforeach ()
-
-#target for formatting soruce files
-add_custom_target(format
-    COMMENT "Running clang-format to change files"
-    COMMAND ${ClangFormat_BIN}
-    -style=file
-    -i
-    ${ALL_SOURCE_FILES}
-)
-
-
-#target to check format on source files 
-add_custom_target(format-check
-    COMMENT "Checking clang-format changes"
-    # Use ! to negate the result for correct output
-    COMMAND !
-    ${ClangFormat_BIN}
-    -style=file
-    -output-replacements-xml
-    ${ALL_SOURCE_FILES}
-    | grep -q "replacement offset" 
-)
-
-# debug to check which file will be formatted
-add_custom_target(
-    listformatfiles
-    COMMAND
-    echo ${ALL_SOURCE_FILES}
-)

cmake/helpers.cmake

@@ -1,46 +0,0 @@
-function(default_build_type val)
-if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
-  message(STATUS "No build type selected, default to Release")
-  set(CMAKE_BUILD_TYPE ${val} CACHE STRING "Build type (default ${val})" FORCE)
-endif()
-endfunction()
-
-function(set_std_fs_lib)
-# from pybind11
-# Check if we need to add -lstdc++fs or -lc++fs or nothing
-if(DEFINED CMAKE_CXX_STANDARD AND CMAKE_CXX_STANDARD LESS 17)
-  set(STD_FS_NO_LIB_NEEDED TRUE)
-elseif(MSVC)
-  set(STD_FS_NO_LIB_NEEDED TRUE)
-else()
-  file(
-    WRITE ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
-    "#include <filesystem>\nint main(int argc, char ** argv) {\n  std::filesystem::path p(argv[0]);\n  return p.string().length();\n}"
-  )
-  try_compile(
-    STD_FS_NO_LIB_NEEDED ${CMAKE_CURRENT_BINARY_DIR}
-    SOURCES ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
-    COMPILE_DEFINITIONS -std=c++17)
-  try_compile(
-    STD_FS_NEEDS_STDCXXFS ${CMAKE_CURRENT_BINARY_DIR}
-    SOURCES ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
-    COMPILE_DEFINITIONS -std=c++17
-    LINK_LIBRARIES stdc++fs)
-  try_compile(
-    STD_FS_NEEDS_CXXFS ${CMAKE_CURRENT_BINARY_DIR}
-    SOURCES ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
-    COMPILE_DEFINITIONS -std=c++17
-    LINK_LIBRARIES c++fs)
-endif()
-
-if(${STD_FS_NEEDS_STDCXXFS})
-  set(STD_FS_LIB stdc++fs PARENT_SCOPE)
-elseif(${STD_FS_NEEDS_CXXFS})
-  set(STD_FS_LIB c++fs PARENT_SCOPE)
-elseif(${STD_FS_NO_LIB_NEEDED})
-  set(STD_FS_LIB "" PARENT_SCOPE)
-else()
-  message(WARNING "Unknown C++17 compiler - not passing -lstdc++fs")
-  set(STD_FS_LIB "")
-endif()
-endfunction()

cmake/package_config.cmake

@@ -1,35 +0,0 @@
-# This cmake code creates the configuration that is found and used by
-# find_package() of another cmake project
-
-# get lower and upper case project name for the configuration files
-
-# configure and install the configuration files
-include(CMakePackageConfigHelpers)
-
-configure_package_config_file(
-  "${CMAKE_SOURCE_DIR}/cmake/project-config.cmake.in"
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
-  INSTALL_DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER}
-  PATH_VARS CMAKE_INSTALL_DIR)
-
-write_basic_package_version_file(
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
-  VERSION ${PROJECT_VERSION}
-  COMPATIBILITY SameMajorVersion
-)
-
-install(FILES
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
-  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
-  COMPONENT devel
-  DESTINATION ${CMAKE_INSTALL_DIR}
-)
-
-
-if (PROJECT_LIBRARIES OR PROJECT_STATIC_LIBRARIES)
-  install(
-    EXPORT "${TARGETS_EXPORT_NAME}"
-    FILE ${PROJECT_NAME_LOWER}-targets.cmake
-    DESTINATION ${CMAKE_INSTALL_DIR}
-    )
-endif ()

cmake/project-config.cmake.in

@@ -1,26 +0,0 @@
-# Config file for @PROJECT_NAME_LOWER@
-#
-# It defines the following variables:
-#
-# @PROJECT_NAME_UPPER@_INCLUDE_DIRS     - include directory
-# @PROJECT_NAME_UPPER@_LIBRARIES        - all dynamic libraries
-# @PROJECT_NAME_UPPER@_STATIC_LIBRARIES - all static libraries
-
-@PACKAGE_INIT@
-
-include(CMakeFindDependencyMacro)
-
-set(SLS_USE_HDF5 "@SLS_USE_HDF5@")
-
-
-find_dependency(Threads)
-
-# Add optional dependencies here
-if (SLS_USE_HDF5)
-    find_dependency(HDF5)
-endif ()
-
-set_and_check(@PROJECT_NAME_UPPER@_CMAKE_INCLUDE_DIRS "@PACKAGE_CMAKE_INSTALL_DIR@")
-
-include("${CMAKE_CURRENT_LIST_DIR}/@TARGETS_EXPORT_NAME@.cmake")
-check_required_components("@PROJECT_NAME@")

cmake/project_version.cc.in

@@ -1,14 +0,0 @@
-#include "project_version.h"
-/// project version as major.minor.patch string
-const char* @PROJECT_NAME@_runtime_project_version(){ return "@PROJECT_VERSION@"; }
-/// package version as string, possibly with git commit: v1.2.3+4+g56789abc
-const char* @PROJECT_NAME@_runtime_package_version(){ return "@PACKAGE_VERSION@"; }
-/// project version as integer: major * 10000 + minor * 100 + patch
-int @PROJECT_NAME@_runtime_version_int()  { return @PROJECT_VERSION_INT@; }
-/// project version as integer: major
-int @PROJECT_NAME@_runtime_version_major(){ return @PACKAGE_VERSION_MAJOR@; }
-/// project version as integer: minor
-int @PROJECT_NAME@_runtime_version_minor(){ return @PACKAGE_VERSION_MINOR@; }
-/// project version as integer: patch
-int @PROJECT_NAME@_runtime_version_patch(){ return @PACKAGE_VERSION_PATCH@; }
-

cmake/project_version.cmake

@@ -1,154 +0,0 @@
-#
-# Sets PROJECT_VERSION and PACKAGE_VERSION
-#
-
-# Don't set PROJECT_VERSION to empty string when no VERSION is given to project() command.
-#if(POLICY CMP0048)
-#  cmake_policy(SET CMP0048 OLD)
-#endif()
-
-# Split a version number into separate components
-# version the version number to split
-# major variable name to store the major version in
-# minor variable name to store the minor version in
-# patch variable name to store the patch version in
-# extra variable name to store a version suffix in
-function(version_split version major minor patch extra)
-    string(REGEX MATCH "([0-9]+)\\.([0-9]+)\\.([0-9]+)(.*)?" version_valid ${version})
-    if(version_valid)
-        string(REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)(.*)?" "\\1;\\2;\\3;\\4" VERSION_MATCHES ${version})
-        list(GET VERSION_MATCHES 0 version_major)
-        set(${major} ${version_major} PARENT_SCOPE)
-        list(GET VERSION_MATCHES 1 version_minor)
-        set(${minor} ${version_minor} PARENT_SCOPE)
-        list(GET VERSION_MATCHES 2 version_patch)
-        set(${patch} ${version_patch} PARENT_SCOPE)
-        list(GET VERSION_MATCHES 3 version_extra)
-        set(${extra} ${version_extra} PARENT_SCOPE)
-    else(version_valid)
-        message(AUTHOR_WARNING "Bad version ${version}; falling back to 0 (have you made an initial release?)")
-        set(${major} "0" PARENT_SCOPE)
-        set(${minor} "0" PARENT_SCOPE)
-        set(${patch} "0" PARENT_SCOPE)
-        set(${extra} "" PARENT_SCOPE)
-    endif(version_valid)
-endfunction(version_split)
-
-##############################
-# get PROJECT_VERSION from git
-##############################
-find_program(GIT_CMD git)
-mark_as_advanced(GIT_CMD)
-if (GIT_CMD)
-    execute_process(COMMAND ${GIT_CMD} rev-parse --show-toplevel
-            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
-            OUTPUT_VARIABLE GIT_TOPLEVEL
-            ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
-endif()
-if (GIT_CMD AND NOT "${GIT_TOPLEVEL}" STREQUAL "")
-    execute_process(COMMAND ${GIT_CMD} rev-parse --short HEAD
-            WORKING_DIRECTORY ${GIT_TOPLEVEL}
-            OUTPUT_VARIABLE GIT_SHA1
-            OUTPUT_STRIP_TRAILING_WHITESPACE)
-    #message(STATUS "GIT_SHA1: " ${GIT_SHA1})
-    execute_process(COMMAND ${GIT_CMD} describe --match "*[0-9].[0-9]*" HEAD
-            WORKING_DIRECTORY ${GIT_TOPLEVEL}
-            OUTPUT_VARIABLE GIT_DESCRIBE
-            ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
-    #message(STATUS "GIT_DESCRIBE: " ${GIT_DESCRIBE})
-
-    # if (GIT_DESCRIBE)
-    #     string(REGEX REPLACE "v?([0-9.]+).*" "\\1" GIT_VERSION ${GIT_DESCRIBE})
-    #     message(STATUS "GIT_VERSION: " ${GIT_VERSION})
-
-    #     # as package version we use the full version from git describe: 1.7.1+7+ge324c81
-    #     if (GIT_DESCRIBE MATCHES ".*-g.*")
-    #         # convert a git describe string to usable debian version, e.g. v1.7.1-7-ge324c81 to 1.7.1+7+ge324c81
-    #         string(REGEX REPLACE "v?([0-9]*.[0-9.]*).*-([0-9]*)-([a-g0-9]*)" "\\1+\\2+\\3" GIT_FULL_VERSION ${GIT_DESCRIBE})
-    #     else()
-    #         # current HEAD is git tag (i.e. releaase), directly use the version
-    #         set(GIT_FULL_VERSION ${GIT_VERSION})
-    #     endif()
-    # else ()
-    #     # no (suitable) tag found
-    #     set(GIT_VERSION "0.0.0")
-    #     # get number of commits in repo
-    #     execute_process(COMMAND ${GIT_CMD} rev-list --count HEAD
-    #             WORKING_DIRECTORY ${GIT_TOPLEVEL}
-    #             OUTPUT_VARIABLE GIT_COMMIT_COUNT
-    #             OUTPUT_STRIP_TRAILING_WHITESPACE)
-    #     set(GIT_FULL_VERSION 0.0.0+${GIT_COMMIT_COUNT}+g${GIT_SHA1})
-    # endif ()
-endif ()
-
-# get version from package.xml if it exists
-if (EXISTS "${PROJECT_SOURCE_DIR}/package.xml")
-    file(STRINGS "${PROJECT_SOURCE_DIR}/package.xml" PACKAGE_XML_VERSION_LINE REGEX <version>[0-9.]*</version>)
-    string(REGEX REPLACE .*<version>\([0-9.]*\)</version>.* \\1 PACKAGE_XML_VERSION "${PACKAGE_XML_VERSION_LINE}")
-    MESSAGE(STATUS "PACKAGE_XML_VERSION: " ${PACKAGE_XML_VERSION})
-endif ()
-
-# set version (if not already manually specified)
-# check versions from different sources and set actually used version
-if (NOT PROJECT_VERSION)
-    # set PROJECT_VERSION to MAJOR.MINOR.PATCH
-    # PACKAGE_VERSION can have extra info
-    if (GIT_VERSION)
-        set(PROJECT_VERSION ${GIT_VERSION})
-        set(PACKAGE_VERSION ${GIT_FULL_VERSION})
-    elseif (PACKAGE_XML_VERSION)
-        set(PROJECT_VERSION ${PACKAGE_XML_VERSION})
-        set(PACKAGE_VERSION ${PROJECT_VERSION})
-    else ()
-        message(WARNING "PROJECT_VERSION not set. Defaulting to 0.0.0")
-        set(PROJECT_VERSION "0.0.0")
-    endif ()
-endif ()
-# if (NOT PACKAGE_VERSION)
-    # message(WARNING "PACKAGE_VERSION not set! Falling back to (${PROJECT_VERSION})")
-    set(PACKAGE_VERSION ${PROJECT_VERSION})
-# endif ()
-
-# warn if versions don't match
-if (GIT_VERSION AND NOT GIT_VERSION MATCHES ${PROJECT_VERSION})
-    message(WARNING "Version from git (${GIT_VERSION}) doesn't match PROJECT_VERSION (${PROJECT_VERSION})")
-endif()
-if (PACKAGE_XML_VERSION AND NOT PACKAGE_XML_VERSION MATCHES ${PROJECT_VERSION})
-    message(WARNING "Version from package.xml (${PACKAGE_XML_VERSION}) doesn't match PROJECT_VERSION (${PROJECT_VERSION})")
-endif()
-
-message(STATUS "PROJECT_VERSION: " ${PROJECT_VERSION})
-message(STATUS "PACKAGE_VERSION: " ${PACKAGE_VERSION})
-
-
-version_split(${PROJECT_VERSION} PACKAGE_VERSION_MAJOR PACKAGE_VERSION_MINOR PACKAGE_VERSION_PATCH extra)
-#message(STATUS "PACKAGE_VERSION_MAJOR: " ${PACKAGE_VERSION_MAJOR})
-#message(STATUS "PACKAGE_VERSION_MINOR: " ${PACKAGE_VERSION_MINOR})
-#message(STATUS "PACKAGE_VERSION_PATCH: " ${PACKAGE_VERSION_PATCH})
-
-# generate an integer version number: major * 10000 + minor * 100 + patch
-math(EXPR PROJECT_VERSION_INT "${PACKAGE_VERSION_MAJOR} * 10000 + ${PACKAGE_VERSION_MINOR} * 100 + ${PACKAGE_VERSION_PATCH}")
-
-# make PROJECT_VERSION available as define in the project source
-#add_definitions(-DPROJECT_VERSION="${PROJECT_VERSION}")
-#add_definitions(-DPROJECT_VERSION_INT=${PROJECT_VERSION_INT})
-#add_definitions(-DPACKAGE_VERSION="${PACKAGE_VERSION}")
-#add_definitions(-DPACKAGE_VERSION_MAJOR=${PACKAGE_VERSION_MAJOR})
-#add_definitions(-DPACKAGE_VERSION_MINOR=${PACKAGE_VERSION_MINOR})
-#add_definitions(-DPACKAGE_VERSION_PATCH=${PACKAGE_VERSION_PATCH})
-
-# set ABI version to major.minor, which will be used for the SOVERSION
-set(abiversion "${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}")
-
-# generate a version.h file in the binary output dir, don't forget to install it...
-string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UPPER)
-
-# These files provide compile-time and runtime version information about your project.
-# To offer the version info to the users of your library, you need to
-# adapt the following lines in your respective CMakeLists.txt:
-#   add_library(<yourlibraryname> SHARED <your code files> ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/project_version.cc)
-#   install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/project_version.h COMPONENT dev DESTINATION include/<your-include-dir>)
-# To use it within your library or tests you need to add the include directory:
-# > target_include_directories(yourtarget PUBLIC ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME})
-configure_file(${CMAKE_CURRENT_LIST_DIR}/project_version.h.in  ${PROJECT_NAME}/project_version.h @ONLY)
-configure_file(${CMAKE_CURRENT_LIST_DIR}/project_version.cc.in ${PROJECT_NAME}/project_version.cc @ONLY)

cmake/project_version.h.in

@@ -1,34 +0,0 @@
-#ifndef @PROJECT_NAME_UPPER@_VERSION_H_
-#define @PROJECT_NAME_UPPER@_VERSION_H_
-
-/// project version as major.minor.patch string
-#define @PROJECT_NAME_UPPER@_VERSION "@PROJECT_VERSION@"
-/// project version as integer: major * 10000 + minor * 100 + patch
-#define @PROJECT_NAME_UPPER@_VERSION_INT @PROJECT_VERSION_INT@
-#define @PROJECT_NAME_UPPER@_VERSION_MAJOR @PACKAGE_VERSION_MAJOR@
-#define @PROJECT_NAME_UPPER@_VERSION_MINOR @PACKAGE_VERSION_MINOR@
-#define @PROJECT_NAME_UPPER@_VERSION_PATCH @PACKAGE_VERSION_PATCH@
-/// package version as string, possibly with git commit: v1.2.3+4+g56789abc
-#define @PROJECT_NAME_UPPER@_PACKAGE_VERSION "@PACKAGE_VERSION@"
-
-///runtime versions, where the above values are linked into a lib and therefore reflect the version
-///of the library itself (not the version of the header at compile time of the user code)
-const char* @PROJECT_NAME@_runtime_project_version();
-const char* @PROJECT_NAME@_runtime_package_version();
-int @PROJECT_NAME@_runtime_version_int();
-int @PROJECT_NAME@_runtime_version_major();
-int @PROJECT_NAME@_runtime_version_minor();
-int @PROJECT_NAME@_runtime_version_patch();
-
-///Check consistency of runtime vs compile-time version number. I.e. the header used
-///for compilation was from the same version as the linked library.
-inline bool @PROJECT_NAME@_check_version_consistency(bool major_minor_only)
-{
-  return @PROJECT_NAME@_runtime_version_major() == @PROJECT_NAME_UPPER@_VERSION_MAJOR &&
-         @PROJECT_NAME@_runtime_version_minor() == @PROJECT_NAME_UPPER@_VERSION_MINOR &&
-         (major_minor_only ||
-          @PROJECT_NAME@_runtime_version_patch() == @PROJECT_NAME_UPPER@_VERSION_PATCH);
-}
-
-
-#endif

cmk.sh

@@ -1,9 +1,5 @@
 #!/bin/bash
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-CMAKE="cmake3"
 BUILDDIR="build"
-INSTALLDIR=""
 HDF5DIR="/opt/hdf5v1.10.0"
 HDF5=0
 COMPILERTHREADS=0
@@ -11,13 +7,6 @@ TEXTCLIENT=0
 RECEIVER=0
 GUI=0
 DEBUG=0
-PYTHON=0
-TESTS=0
-SIMULATOR=0
-CTBGUI=0
-MANUALS=0
-MANUALS_ONLY_RST=0
-MOENCHZMQ=0
 
 
 CLEAN=0
@@ -26,32 +15,17 @@ CMAKE_PRE=""
 CMAKE_POST=""
 
 usage() { echo -e "
-Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i] [-j <Number of threads>] [-k <CMake command>] [-l <Install directory>] [-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]  
+Usage: $0 [-c] [-b] [-h] [-d <HDF5 directory>] [-j]
  -[no option]: only make
- -b: Builds/Rebuilds CMake files normal mode
  -c: Clean
- -d: HDF5 Custom Directory
- -e: Debug mode
- -g: Build/Rebuilds gui
+ -b: Builds/Rebuilds CMake files normal mode
  -h: Builds/Rebuilds Cmake files with HDF5 package
- -i: Builds tests
- -j: Number of threads to compile through
- -k: CMake command
- -l: Install directory
- -m: Manuals
- -n: Manuals without compiling doxygen (only rst)
- -p: Builds/Rebuilds Python API
- -r: Build/Rebuilds only receiver
- -s: Simulator
+ -d: HDF5 Custom Directory
  -t: Build/Rebuilds only text client
- -u: Chip Test Gui
- -z: Moench zmq processor
-
-Rebuild when you switch to a new build and compile in parallel:
-./cmk.sh -bj5
-
-Rebuild python
-./cmk.sh -p
+ -r: Build/Rebuilds only receiver
+ -g: Build/Rebuilds only gui
+ -j: Number of threads to compile through
+ -e: Debug mode
  
 For only make:
 ./cmk.sh
@@ -81,7 +55,7 @@ For rebuilding only certain sections
  
  " ; exit 1; }
 
-while getopts ":bcd:eghij:k:l:mnpq:rstuz" opt ; do
+while getopts ":bchd:j:trge" opt ; do
 	case $opt in
 	b) 
 		echo "Building of CMake files Required"
@@ -91,113 +65,73 @@ while getopts ":bcd:eghij:k:l:mnpq:rstuz" opt ; do
 		echo "Clean Required"
 		CLEAN=1
 		;;
-	d) 
-		echo "New HDF5 directory: $OPTARG" 
-		HDF5DIR=$OPTARG
-		;;
-	e)
-		echo "Compiling Options: Debug" 
-		DEBUG=1
-		;;  
-	g) 
-		echo "Compiling Options: GUI" 
-		GUI=1
-		REBUILD=1
-		;; 
 	h) 
 		echo "Building of CMake files with HDF5 option Required"
 		HDF5=1
 		REBUILD=1
 		;;
-	i)
-		echo "Compiling Options: Tests" 
-		TESTS=1
-		;;   
+	d) 
+		echo "New HDF5 directory: $OPTARG" 
+		HDF5DIR=$OPTARG
+		;;
 	j) 
 		echo "Number of compiler threads: $OPTARG" 
 		COMPILERTHREADS=$OPTARG
 		;;
-	k)
-		echo "CMake command: $OPTARG"
-		CMAKE="$OPTARG"
-		;;
-	l)
-		echo "CMake install directory: $OPTARG"
-		INSTALLDIR="$OPTARG"
-		;;
-	m)	
-		echo "Compiling Manuals"
-		MANUALS=1
-		;;
-	n)	
-		echo "Compiling Manuals (Only RST)"
-		MANUALS_ONLY_RST=1
-		;;
-	p)
-    	echo "Compiling Options: Python" 
-		PYTHON=1
+	t) 
+    	echo "Compiling Options: Text Client" 
+		TEXTCLIENT=1
 		REBUILD=1
-		;;   
+		;;      
 	r) 
 		echo "Compiling Options: Receiver" 
 		RECEIVER=1
 		REBUILD=1
 		;;      
-	s)
-		echo "Compiling Options: Simulator" 
-		SIMULATOR=1
-		;; 
-	t) 
-    	echo "Compiling Options: Text Client" 
-		TEXTCLIENT=1
+	g) 
+		echo "Compiling Options: GUI" 
+		GUI=1
 		REBUILD=1
-		;;
-	u)
-		echo "Compiling Options: Chip Test Gui"
-		CTBGUI=1
-		;;
-	z)	
-		echo "Compiling Moench Zmq Processor"
-		MOENCHZMQ=1
-		;;
-  \?)
-    echo "Invalid option: -$OPTARG" 
+		;;  
+	e)
+		echo "Compiling Options: Debug" 
+		DEBUG=1
+		;;    
+    \?)
+     	echo "Invalid option: -$OPTARG" 
 		usage
-    exit 1
-   	;;
-  :)
-    echo "Option -$OPTARG requires an argument."
+      	exit 1
+      	;;
+    :)
+      	echo "Option -$OPTARG requires an argument."
 		usage
-    exit 1
-    ;;	
+      	exit 1
+      	;;	
 	esac
 done
 
 
-#python
-if [ $PYTHON -eq 1 ]; then
-	CMAKE_POST+=" -DSLS_USE_PYTHON=ON "
-	echo "Enabling Compile Option: Python"
-fi
+
+
 
 
 if [ $TEXTCLIENT -eq 0 ] && [ $RECEIVER -eq 0 ]  && [ $GUI -eq 0 ]; then
-	#CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=ON -DSLS_USE_GUI=ON "
-	CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=ON -DSLS_USE_GUI=OFF "
-    echo "Enabling Compile Option: TextClient, Receiver and GUI"
+       CMAKE_POST+=" -DUSE_TEXTCLIENT=ON -DUSE_RECEIVER=ON -DUSE_GUI=ON "
+       echo "Compile Option: TextClient, Receiver and GUI"
 else 
-    if [ $TEXTCLIENT -eq 1 ]; then
-        CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=OFF "
-        echo "Enabling Compile Option: TextClient"
-    fi
-    if [ $RECEIVER -eq 1 ]; then
-        CMAKE_POST+=" -DSLS_USE_RECEIVER=ON "
-        echo "Enabling Compile Option: Receiver"
-    fi              
-    if [ $GUI -eq 1 ]; then
-        CMAKE_POST+=" -DSLS_USE_GUI=ON "
-        echo "Enabling Compile Option: GUI"
-    fi
+       if [ $TEXTCLIENT -eq 1 ]; then
+              CMAKE_POST+=" -DUSE_TEXTCLIENT=ON "
+               echo "Compile Option: TextClient"
+       fi
+       if [ $RECEIVER -eq 1 ]; then
+               CMAKE_POST+=" -DUSE_RECEIVER=ON "
+               echo "Compile Option: Receiver"
+       fi
+                               
+       if [ $GUI -eq 1 ]; then
+               CMAKE_POST+=" -DUSE_GUI=ON "
+               echo "Compile Option: GUI"
+       fi
 fi
 
 
@@ -219,61 +153,22 @@ fi
 
 #Debug
 if [ $DEBUG -eq 1 ]; then
-#	CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug "
-	CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_SANITIZER=ON "
+	CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug "
 	echo "Debug Option enabled"
 fi 
 
-#Simulator
-if [ $SIMULATOR -eq 1 ]; then
-	CMAKE_POST+=" -DSLS_USE_SIMULATOR=ON "
-	echo "Simulator Option enabled"
-fi 
-
-#Manuals
-if [ $MANUALS -eq 1 ]; then
-	CMAKE_POST+=" -DSLS_BUILD_DOCS=ON "
-	echo "Manuals Option enabled"
-fi 
-
-#Moench zmq processor
-if [ $MOENCHZMQ -eq 1 ]; then
-	CMAKE_POST+=" -DSLS_USE_MOENCH=ON "
-	echo "Moench Zmq Processor Option enabled"
-fi 
-
-#Chip Test Gui
-if [ $CTBGUI -eq 1 ]; then
-	CMAKE_POST+=" -DSLS_USE_CTBGUI=ON "
-	echo "CTB Gui Option enabled"
-fi 
-
-#Tests
-if [ $TESTS -eq 1 ]; then
-	CMAKE_POST+=" -DSLS_USE_TESTS=ON -DSLS_USE_INTEGRATION_TESTS=ON"
-	echo "Tests Option enabled"
-fi 
 
 #hdf5 rebuild
 if [ $HDF5 -eq 1 ]; then
-#	CMAKE_PRE+="HDF5_ROOT="$HDF5DIR
-	CMAKE_POST+=" -DCMAKE_INSTALL_PREFIX="$HDF5DIR
-	CMAKE_POST+=" -DSLS_USE_HDF5=ON "
+	CMAKE_PRE+="HDF5_ROOT="$HDF5DIR
+	CMAKE_POST+=" -DUSE_HDF5=ON "
 #normal mode rebuild
 else
-	CMAKE_POST+=" -DSLS_USE_HDF5=OFF "
-fi
-
-
-#install
-if [ -n "$INSTALLDIR" ]; then
-	CMAKE_POST+=" -DCMAKE_INSTALL_PREFIX=$INSTALLDIR"
-	CMAKE_POST+=" -DCMAKE_FIND_ROOT_PATH=$INSTALLDIR"
+	CMAKE_POST+=" -DUSE_HDF5=OFF "
 fi
 
 
 #enter build dir
-#pushd $BUILDDIR;
 cd $BUILDDIR;
 echo "in "$PWD
 
@@ -282,7 +177,7 @@ echo "in "$PWD
 #cmake
 if [ $REBUILD -eq 1 ]; then
 	rm -f CMakeCache.txt
-	BUILDCOMMAND="$CMAKE_PRE $CMAKE $CMAKE_POST .."
+	BUILDCOMMAND="$CMAKE_PRE cmake $CMAKE_POST .."
 	echo $BUILDCOMMAND
 	eval $BUILDCOMMAND
 fi
@@ -295,45 +190,15 @@ fi
 
 #make
 if [ $COMPILERTHREADS -gt 0 ]; then
-	if [ $MANUALS -eq 0 ] && [ $MANUALS_ONLY_RST -eq 0 ]; then
-		BUILDCOMMAND="make -j$COMPILERTHREADS"
-		echo $BUILDCOMMAND
-		eval $BUILDCOMMAND
-	else
-		if [ $MANUALS -eq 1 ]; then
-			BUILDCOMMAND="make docs -j$COMPILERTHREADS"
-			echo $BUILDCOMMAND
-			eval $BUILDCOMMAND
-		else
-			BUILDCOMMAND="make rst -j$COMPILERTHREADS"
-			echo $BUILDCOMMAND
-			eval $BUILDCOMMAND		
-		fi
-	fi 
+	BUILDCOMMAND="make -j$COMPILERTHREADS"
+	echo $BUILDCOMMAND
+	eval $BUILDCOMMAND
 else
-	if [ $MANUALS -eq 0 ] && [ $MANUALS_ONLY_RST -eq 0 ]; then
-		echo "make"
-		make
-	else
-		if [ $MANUALS -eq 1 ]; then
-			echo "make docs"
-			make docs
-		else
-			echo "make rst"
-			make rst
-		fi
-	fi 
-fi
-
-
-#install
-if [ -n "$INSTALLDIR" ]; then
-	make install
-#	popd
-#	$CMAKE --build $BUILDDIR --target install
+	make
 fi
 
 
 
 
 
+

commitVersions.sh

@@ -0,0 +1,15 @@
+sh updateSvnVersion.sh
+
+cd slsDetectorGui
+git commit -a -m "updating versions"
+git push origin developer:developer
+
+cd ../slsDetectorSoftware
+git commit -a -m "updating versions"
+git push origin developer:developer
+
+cd ../slsReceiverSoftware
+git commit -a -m "updating versions"
+git push origin developer:developer
+
+cd ..

conda-recipes/main-library/build.sh

@@ -1,29 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-if [ ! -d "build" ]; then
-    mkdir build
-fi
-if [ ! -d "install" ]; then
-    mkdir install
-fi
-cd build
-cmake .. -G Ninja \
-      -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \
-      -DCMAKE_INSTALL_PREFIX=install \
-      -DSLS_USE_TEXTCLIENT=ON \
-      -DSLS_USE_RECEIVER=ON \
-      -DSLS_USE_GUI=ON \
-      -DSLS_USE_MOENCH=ON\
-      -DSLS_USE_TESTS=ON \
-      -DSLS_USE_PYTHON=OFF \
-      -DCMAKE_BUILD_TYPE=Release \
-      -DSLS_USE_HDF5=OFF \
-      -DSLS_USE_SYSTEM_ZMQ=ON \
-     
-NCORES=$(getconf _NPROCESSORS_ONLN)
-echo "Building using: ${NCORES} cores"
-cmake --build . -- -j${NCORES}
-cmake --build . --target install
-
-CTEST_OUTPUT_ON_FAILURE=1 ctest -j 1

conda-recipes/main-library/conda_build_config.yaml

@@ -1,13 +0,0 @@
-
-c_compiler:
-  - gcc                        # [linux]
-
-c_stdlib:
-  - sysroot                    # [linux]
-
-cxx_compiler:
-  - gxx                        # [linux]
-
-
-c_stdlib_version:              # [linux]
-  - 2.17                       # [linux]

conda-recipes/main-library/copy_gui.sh

@@ -1,5 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-#Copy the GUI 
-mkdir -p $PREFIX/bin
-cp build/install/bin/slsDetectorGui $PREFIX/bin/.

conda-recipes/main-library/copy_lib.sh

@@ -1,24 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-mkdir -p $PREFIX/lib
-mkdir -p $PREFIX/bin
-mkdir -p $PREFIX/include/sls
-
-#Shared and static libraries
-cp build/install/lib/* $PREFIX/lib/
-
-#Binaries
-cp build/install/bin/sls_detector_acquire $PREFIX/bin/.
-cp build/install/bin/sls_detector_acquire_zmq $PREFIX/bin/.
-cp build/install/bin/sls_detector_get $PREFIX/bin/.
-cp build/install/bin/sls_detector_put $PREFIX/bin/.
-cp build/install/bin/sls_detector_help $PREFIX/bin/.
-cp build/install/bin/sls_detector $PREFIX/bin/.
-cp build/install/bin/slsReceiver $PREFIX/bin/.
-cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
-cp build/install/bin/slsFrameSynchronizer $PREFIX/bin/.
-
-
-cp build/install/include/sls/* $PREFIX/include/sls
-cp -rv build/install/share $PREFIX

conda-recipes/main-library/copy_moench.sh

@@ -1,6 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-#Copy the Moench executables 
-mkdir -p $PREFIX/bin
-cp build/install/bin/moench* $PREFIX/bin/.

conda-recipes/main-library/meta.yaml

@@ -1,80 +0,0 @@
-source:
-  path: ../..
-
-{% set version = load_file_regex(load_file = 'VERSION', regex_pattern = '(\d+(?:\.\d+)*(?:[\+\w\.]+))').group(1) %}
-package:
-  name: sls_detector_software
-  version: {{ version }} 
-  
-build:
-  number: 0
-  binary_relocation: True
-  rpaths: 
-    - lib/
-
-requirements:
-  build:
-    - {{ compiler('c') }}
-    - {{ stdlib("c") }}
-    - {{ compiler('cxx') }}
-    - git
-    - cmake
-    - ninja
-    - qt 5.*
-
-  host:
-    - libstdcxx-ng
-    - libgcc-ng
-    - libgl-devel  # [linux]
-    - libtiff
-    - zlib
-    - expat
-    - zeromq
-  
-  run:
-    - libstdcxx-ng
-    - libgcc-ng 
-
-
-outputs:
-  - name: slsdetlib
-    script: copy_lib.sh
-
-    requirements:
-      build:
-        - {{ compiler('c') }}
-        - {{ stdlib("c") }}
-        - {{ compiler('cxx') }}
-
-      run: 
-        - libstdcxx-ng
-        - libgcc-ng
-
-
-  - name: slsdetgui
-    script: copy_gui.sh
-    requirements:
-
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        
-
-      run:
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - qt 5.*
-
-
-  - name: moenchzmq
-    script: copy_moench.sh
-    requirements:
-
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-
-      run:
-        - {{ pin_subpackage('slsdetlib', exact=True) }}

conda-recipes/python-client/conda_build_config.yaml

@@ -1,16 +0,0 @@
-python:
-    - 3.11 
-    - 3.12
-    - 3.13
-
-c_compiler:
-  - gcc                        # [linux]
-
-c_stdlib:
-  - sysroot                    # [linux]
-
-cxx_compiler:
-  - gxx                        # [linux]
-
-c_stdlib_version:              # [linux]
-  - 2.17                       # [linux]

conda-recipes/python-client/meta.yaml

@@ -1,45 +0,0 @@
-source:
-  path: ../..
-
-{% set version = load_file_regex(load_file = 'VERSION', regex_pattern = '(\d+(?:\.\d+)*(?:[\+\w\.]+))').group(1) %}
-package:
-  name: slsdet
-  version: {{ version }} 
-
-build:
-  number: 0
-  script:
-    - unset CMAKE_GENERATOR && {{ PYTHON }} -m pip install . -vv  # [not win]
-
-requirements:
-  build:
-    - python {{python}}
-    - {{ compiler('c') }}
-    - {{ stdlib("c") }}
-    - {{ compiler('cxx') }}
-
-  host:
-    - cmake
-    - ninja
-    - python {{python}}
-    - pip
-    - scikit-build-core
-    - pybind11 >=2.13.0
-    - fmt
-    - zeromq
-    - nlohmann_json
-    - catch2
-
-  run:
-    - python {{python}}
-    - numpy
-
-
-test:
-  imports:
-    - slsdet
-
-
-about:
-  summary: An example project built with pybind11 and scikit-build.
-  # license_file: LICENSE

configure

@@ -0,0 +1,58 @@
+##!/bin/bash
+
+: ${INSTALLROOT=$PWD}
+read -p "Installation directory [default:\"$INSTALLROOT\"]:" -e t3
+if [ -z "$t3" ]
+then
+echo
+else
+	INSTALLROOT=$t3
+fi
+echo "INSTALLROOT will be  \"$INSTALLROOT\""	
+export INSTALLROOT
+
+: ${BINDIR="bin"}
+read -p "Binaries directory [default:\"$BINDIR\"]:" -e t4
+if [ -z "$t4" ]
+then
+	BINDIR=$INSTALLROOT/$BINDIR
+else
+	BINDIR=$INSTALLROOT/$t4
+fi
+echo "BINDIR will be  \"$BINDIR\""	
+export BINDIR
+
+: ${LIBDIR="bin"}
+read -p "Libraries directory [default:\"$LIBDIR\"]:" -e t5
+if [ -z "$t5" ]
+then
+	LIBDIR=$INSTALLROOT/$LIBDIR
+else
+	LIBDIR=$INSTALLROOT/$t5
+fi	
+echo "LIBDIR will be  \"$LIBDIR\""	
+export LIBDIR
+
+:  ${INCDIR="include"}
+read -p "Includes directory [default:\"$INCDIR\"]:" -e t6
+if [ -z "$t6" ]
+then
+	INCDIR=$INSTALLROOT/$INCDIR
+else
+	INCDIR=$INSTALLROOT/$t6
+fi	
+echo "INCDIR will be  \"$INCDIR\""	
+export INCDIR
+
+:  ${DOCDIR="doc"}
+read -p "Documentation directory [default:\"$DOCDIR\"]:" -e t7
+if [ -z "$t7" ]
+then
+	DOCDIR=$INSTALLROOT/$DOCDIR
+else	
+	DOCDIR=$INSTALLROOT/$t7
+fi
+echo "DOCDIR will be  \"$DOCDIR\""
+export DOCDIR
+
+

docs/CMakeLists.txt

@@ -1,120 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-find_package(Doxygen REQUIRED)
-find_package(Sphinx REQUIRED)
-
-
-
-
-# Utility to generate command line documentation
-add_executable(gendoc src/gendoc.cpp)
-# This is a bit hacky, but better than exposing stuff? 
-target_include_directories(gendoc PRIVATE ${PROJECT_SOURCE_DIR}/slsDetectorSoftware/src)
-target_link_libraries(gendoc PRIVATE
-  slsDetectorShared
-)
-set_target_properties(gendoc PROPERTIES 
-  RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-)
-
-
-
-
-#Doxygen
-set(DOXYGEN_IN ${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in)
-set(DOXYGEN_OUT ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile)
-configure_file(${DOXYGEN_IN} ${DOXYGEN_OUT} @ONLY)
-
-#Sphinx
-set(SPHINX_SOURCE ${CMAKE_CURRENT_SOURCE_DIR}/src)
-set(SPHINX_BUILD ${CMAKE_CURRENT_BINARY_DIR})
-
-set(SPHINX_SOURCE_FILES
-  src/commandline.rst
-  src/container_utils.rst
-  src/consuming.rst
-  src/dependencies.rst
-  src/detector.rst
-  src/index.rst
-  src/installation.rst
-  src/pydetector.rst
-  src/pyenums.rst
-  src/pyexamples.rst
-  src/pyPatternGenerator.rst
-  src/servers.rst
-  src/multidet.rst
-  src/receiver_api.rst
-  src/result.rst
-  src/type_traits.rst
-  src/ToString.rst
-  src/examples.rst
-  src/pygettingstarted.rst
-  src/firmware.rst
-  src/serverupgrade.rst
-  src/virtualserver.rst
-  src/serverdefaults.rst
-  src/quick_start_guide.rst
-  src/troubleshooting.rst
-  src/pattern.rst
-  src/receivers.rst
-  src/slsreceiver.rst
-  src/udpheader.rst
-  src/udpconfig.rst
-  src/udpdetspec.rst
-  src/fileformat.rst
-  src/slsreceiverheaderformat.rst
-  src/masterfileattributes.rst
-  src/binaryfileformat.rst
-  src/hdf5fileformat.rst
-  src/zmqjsonheaderformat.rst
-  src/dataformat.rst
-  src/softwarearchitecture.rst
-  src/configcommands.rst
-)
-
-foreach(filename ${SPHINX_SOURCE_FILES})
-configure_file(${CMAKE_CURRENT_SOURCE_DIR}/${filename} 
-              "${SPHINX_BUILD}/${filename}")
-endforeach(filename ${SPHINX_SOURCE_FILES})
-
-configure_file(
-  "${CMAKE_CURRENT_SOURCE_DIR}/conf.py.in"
-  "${SPHINX_BUILD}/conf.py"
-  @ONLY)
-
-configure_file(
-  "${CMAKE_CURRENT_SOURCE_DIR}/gen_server_doc.py.in"
-  "${SPHINX_BUILD}/gen_server_doc.py"
-  @ONLY)
-
-configure_file(
-  "${CMAKE_CURRENT_SOURCE_DIR}/static/extra.css"
-  "${SPHINX_BUILD}/static/css/extra.css"
-  @ONLY)
-
-
-file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/src/images
-     DESTINATION ${SPHINX_BUILD}/src)
-     
-
-add_custom_target(server_rst python gen_server_doc.py)  
-
-add_custom_target(docs
-              gendoc
-              COMMAND python gen_server_doc.py
-              COMMAND ${DOXYGEN_EXECUTABLE} ${DOXYGEN_OUT}
-              COMMAND ${SPHINX_EXECUTABLE} -a -b html
-              -Dbreathe_projects.slsDetectorPackage=${CMAKE_CURRENT_BINARY_DIR}/xml
-              -c "${SPHINX_BUILD}"
-              ${SPHINX_BUILD}/src 
-              ${SPHINX_BUILD}/html
-              COMMENT "Generating documentation with Sphinx")
-
-add_custom_target(rst
-              COMMAND ${SPHINX_EXECUTABLE} -a -b html
-              -Dbreathe_projects.slsDetectorPackage=${CMAKE_CURRENT_BINARY_DIR}/xml
-              -c "${SPHINX_BUILD}"
-              ${SPHINX_BUILD}/src 
-              ${SPHINX_BUILD}/html
-              COMMENT "Generating documentation with Sphinx")
-

docs/conf.py.in

@@ -1,66 +0,0 @@
-# Configuration file for the Sphinx documentation builder.
-#
-# This file only contains a selection of the most common options. For a full
-# list see the documentation:
-# http://www.sphinx-doc.org/en/master/config
-
-# -- Path setup --------------------------------------------------------------
-
-# If extensions (or modules to document with autodoc) are in another directory,
-# add these directories to sys.path here. If the directory is relative to the
-# documentation root, use os.path.abspath to make it absolute, like shown here.
-#
-import os
-import sys
-# sys.path.insert(0, os.path.abspath('.'))
-sys.path.insert(0, os.path.abspath('../bin/'))
-#sys.path.insert(0, '/home/l_frojdh/sls/build/bin')
-#sys.path.insert(0, @CMAKE_CURRENT_BINARY_DIR@)
-print(sys.path)
-
-# -- Project information -----------------------------------------------------
-
-project = 'slsDetectorPackage @PROJECT_VERSION@'
-copyright = '2020, PSD Detector Group'
-author = 'PSD Detector Group'
-version = '@PROJECT_VERSION@'
-
-# -- General configuration ---------------------------------------------------
-
-# Add any Sphinx extension module names here, as strings. They can be
-# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
-# ones.
-extensions = ['breathe',
-              'sphinx_rtd_theme',
-              'sphinx.ext.autodoc',
-              'sphinx.ext.napoleon',
-             ]
-
-breathe_default_project = "slsDetectorPackage"
-napoleon_use_ivar = True
-
-
-# Add any paths that contain templates here, relative to this directory.
-templates_path = ['_templates']
-
-# List of patterns, relative to source directory, that match files and
-# directories to ignore when looking for source files.
-# This pattern also affects html_static_path and html_extra_path.
-exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
-
-
-# -- Options for HTML output -------------------------------------------------
-
-# The theme to use for HTML and HTML Help pages.  See the documentation for
-# a list of builtin themes.
-#
-html_theme = "sphinx_rtd_theme"
-
-# Add any paths that contain custom static files (such as style sheets) here,
-# relative to this directory. They are copied after the builtin static files,
-# so a file named "default.css" will overwrite the builtin "default.css".
-html_static_path = ['static']
-
-
-def setup(app):
-    app.add_css_file('css/extra.css')  # may also be an URL

docs/gen_server_doc.py.in

@@ -1,86 +0,0 @@
-import os 
-import re
-from pathlib import Path
-def remove_comments(text):
-    def replacer(match):
-        s = match.group(0)
-        if s.startswith('/'):
-            return " " # note: a space and not an empty string
-        else:
-            return s
-    pattern = re.compile(
-        r'//.*?$|/\*.*?\*/|\'(?:\\.|[^\\\'])*\'|"(?:\\.|[^\\"])*"',
-        re.DOTALL | re.MULTILINE
-    )
-    return re.sub(pattern, replacer, text)
-
-
-# @CMAKE_CURRENT_BINARY_DIR@
-
-print('\n\n\n\n SERVER CSV')
-
-src = Path('@CMAKE_SOURCE_DIR@')/'slsDetectorServers/'
-detectors = ['Mythen3', 'Gotthard2', 'Eiger', 
-            'Jungfrau', 'Moench', 'Ctb']
-
-
-for det in detectors:
-    print(det)
-    in_fname = src/f'{det.lower()}DetectorServer/slsDetectorServer_defs.h'
-    #print(f'Reading: {in_fname}')
-    with open(in_fname) as f:
-        lines = f.read().replace('\\\n', '')
-        lines = lines.splitlines(keepends = True)
-
-    lines = [l.strip('#define').strip(' ') for l in lines if l.startswith('#define')]
-    output = []
-    signals = []
-    fields = ['Name,', 'Value', 'Comment']
-    excluded = ['DAC_NAMES', 'DEFAULT_DAC_VALS', 'CLK_NAMES', 'ONCHIP_DAC_NAMES']
-    header = f'{fields[0]:35}{fields[1]:35}\n'
-    output.append(header)
-    signals.append(header)
-    dac_names = []
-    dac_values = []
-    for line in lines:
-        name, *parts = line.split()
-        arg = ' '.join(parts)
-        value, *comments = arg.split('//') 
-        value = value.strip('() ')
-        # value = value.replace(', ', ' ')
-        value = value.replace('\"', '')
-        if name not in excluded:
-            name += ','
-            if name.startswith('SIGNAL_'):
-                signals.append(f'{name:35}{value}\n')
-            else:
-                output.append(f'{name:35}\"{value}\"\n')
-        elif name == 'DAC_NAMES':
-            dac_names = [v.strip(', ') for v in value.split()]
-            dac_names = [n+',' for n in dac_names]
-        elif name == 'DEFAULT_DAC_VALS':
-            dac_values = remove_comments(value).strip('{}; ')
-            dac_values = dac_values.replace(',', '').split()
-            dac_values = [v.strip('') for v in dac_values]
-
-    print(f"dac_names: {len(dac_names)}, dac_values={len(dac_values)}")
-    if len(dac_values) == 0:
-        dac_values = ['N/A']*len(dac_names)
-
-    
-
-    rstpath = Path('@CMAKE_SOURCE_DIR@')/'docs/src/'
-
-    out_fname = Path.cwd()/f'src/{det.lower()}.csv'
-    out_dac_fname = Path.cwd()/f'src/{det.lower()}-dacs.csv'
-    #print(f'Writing: {out_fname}')
-    with open(out_fname, 'w') as f:
-        f.writelines(output)
-
-    output = [f'{n:35}{v}\n' for n,v in zip(dac_names, dac_values)]
-    output.insert(0, header)
-
-    with open(out_dac_fname, 'w') as f:
-        f.writelines(output)
-
-print('END\n\n\n\n')

docs/images_src/system_communication_architecture.drawio

@@ -1,787 +0,0 @@
-<mxfile host="app.diagrams.net" agent="Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/139.0.0.0 Safari/537.36" version="28.1.0">
-  <diagram name="Page-1" id="SqHbah1k9D3XqnipfQD4">
-    <mxGraphModel grid="0" page="0" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" pageScale="1" pageWidth="850" pageHeight="1100" math="0" shadow="0">
-      <root>
-        <mxCell id="0" />
-        <mxCell id="1" parent="0" />
-        <mxCell id="kpcteDQP5Q-WdnKVJ5EM-1" value="" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#BBDDFF;strokeColor=#BBEEFF;" vertex="1" parent="1">
-          <mxGeometry x="459" y="71" width="171" height="134" as="geometry" />
-        </mxCell>
-        <mxCell id="QgYz-w7MwsADk0cZRM1J-27" value="&lt;p&gt;&lt;font face=&quot;Courier New&quot; style=&quot;&quot;&gt;Client listening to&amp;nbsp;&lt;br&gt;&lt;font style=&quot;&quot;&gt;zmqport&lt;/font&gt; : &lt;font style=&quot;&quot;&gt;&lt;b style=&quot;&quot;&gt;30001&lt;/b&gt;&lt;/font&gt;&lt;br&gt;&lt;font style=&quot;&quot;&gt;zmqip&lt;/font&gt;&amp;nbsp; &amp;nbsp;: &lt;font style=&quot;&quot;&gt;&lt;b style=&quot;&quot;&gt;129.129.100.115&lt;/b&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;" style="text;html=1;align=left;verticalAlign=middle;resizable=1;points=[];autosize=1;strokeColor=#4A7B72;fillColor=default;fontColor=#4A7B72;movable=1;rotatable=1;deletable=1;editable=1;locked=0;connectable=1;" vertex="1" parent="1">
-          <mxGeometry x="-351.99" y="2247" width="186.49" height="51" as="geometry" />
-        </mxCell>
-        <mxCell id="IUwO_ccEPv4BRx6tuxwP-13" value="&lt;font face=&quot;Comic Sans MS&quot;&gt;Client/ GUI&lt;/font&gt;" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#AAAAFF;strokeColor=#AAAAFF;labelPosition=center;verticalLabelPosition=middle;align=center;verticalAlign=middle;fontSize=17;gradientColor=none;fontColor=#FFFFFF;" vertex="1" parent="1">
-          <mxGeometry x="457.65" y="2121" width="132" height="68" as="geometry" />
-        </mxCell>
-        <mxCell id="hmBfKhxy8mBhXzrh4bXw-164" value="" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#f5f5f5;fontColor=#333333;strokeColor=#E6E6E6;" vertex="1" parent="1">
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-          <mxGeometry x="47.629999999999995" y="5405" width="196" height="84" as="geometry" />
-        </mxCell>
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docs/src/ToString.rst

@@ -1,6 +0,0 @@
-ToString
-==============
-
-String conversion
-
-.. doxygenfile:: ToString.h

docs/src/binaryfileformat.rst

@@ -1,387 +0,0 @@
-.. _binary file format:
-
-Binary File Format
-====================
-
-This is the default file format that can be configured using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
-
-    .. code-block:: bash
-
-        sls_detector_put fformat binary
-
-
-Master File
---------------
-
-* File Name: [fpath]/[fname]_master_[findex].json :ref:`Details here<file name format>`
-
-* It is in json format and created for every acquisition.
-
-* It contains :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type shown in :ref:`master json file examples <json master file examples>` here.
-
-* It shows the :ref:`**SLS Receiver Header** <sls receiver header format>` format used in data files.
-
-* Enabled/disabled using command `fmaster <commandline.html#term-fmaster-0-1>`_. 
-
-
-Data File
-----------
-
-* File Name: [fpath]/[fname]_dx_fy_[findex].raw :ref:`Details here<file name format>`
-
-* It store multiple frames sequentially, with total number of frames determined by `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_ parameter.
-
-* Each frame includes a :ref:`**sls_receiver_header** <sls receiver header format>` structure, followed by the actual frame data.
-
-* More details on :ref:`slsReceiverHeader<sls receiver header format>` and the actual image data is described in the :ref:`Detector Image Size and Format <data format>` section.
-
-
-.. _json master file examples:
-
-JSON Master File Examples
----------------------------------------------------
-
-Eiger
-^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 15:46:30 2024",
-        "Detector Type": "Eiger",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 2,
-            "y": 1
-        },
-        "Image Size in bytes": 262144,
-        "Pixels": {
-            "x": 512,
-            "y": 256
-        },
-        "Max Frames Per File": 10000,
-        "Frame Discard Policy": "nodiscard",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 1,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Dynamic Range": 16,
-        "Ten Giga": 0,
-        "Exptime": "1s",
-        "Period": "1s",
-        "Threshold Energy": -1,
-        "Sub Exptime": "2.62144ms",
-        "Sub Period": "2.62144ms",
-        "Quad": 0,
-        "Number of rows": 256,
-        "Rate Corrections": "[0]",
-        "Frames in File": 1,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }
-
-
-
-Jungfrau
-^^^^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 13:03:53 2024",
-        "Detector Type": "Jungfrau",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 1,
-            "y": 1
-        },
-        "Image Size in bytes": 1048576,
-        "Pixels": {
-            "x": 1024,
-            "y": 512
-        },
-        "Max Frames Per File": 10000,
-        "Frame Discard Policy": "nodiscard",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 1000,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Exptime": "10us",
-        "Period": "2ms",
-        "Number of UDP Interfaces": 1,
-        "Number of rows": 512,
-        "Frames in File": 10,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }
-
-
-Gotthard2
-^^^^^^^^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 14:18:17 2024",
-        "Detector Type": "Gotthard2",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 1,
-            "y": 1
-        },
-        "Image Size in bytes": 2560,
-        "Pixels": {
-            "x": 1280,
-            "y": 1
-        },
-        "Max Frames Per File": 20000,
-        "Frame Discard Policy": "nodiscard",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 10,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Exptime": "0ns",
-        "Period": "0ns",
-        "Burst Mode": "burst_internal",
-        "Frames in File": 10,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }
-
-Mythen3
-^^^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 14:39:14 2024",
-        "Detector Type": "Mythen3",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 1,
-            "y": 1
-        },
-        "Image Size in bytes": 15360,
-        "Pixels": {
-            "x": 3840,
-            "y": 1
-        },
-        "Max Frames Per File": 10000,
-        "Frame Discard Policy": "nodiscard",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 1,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Dynamic Range": 32,
-        "Ten Giga": 1,
-        "Period": "2ms",
-        "Counter Mask": "0x7",
-        "Exptime1": "0.1s",
-        "Exptime2": "0.1s",
-        "Exptime3": "0.1s",
-        "GateDelay1": "0ns",
-        "GateDelay2": "0ns",
-        "GateDelay3": "0ns",
-        "Gates": 1,
-        "Threshold Energies": "[-1, -1, -1]",
-        "Frames in File": 1,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }
-
-
-Moench
-^^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 14:41:32 2024",
-        "Detector Type": "Moench",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 1,
-            "y": 1
-        },
-        "Image Size in bytes": 320000,
-        "Pixels": {
-            "x": 400,
-            "y": 400
-        },
-        "Max Frames Per File": 100000,
-        "Frame Discard Policy": "discardpartial",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 1,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Exptime": "10us",
-        "Period": "2ms",
-        "Number of UDP Interfaces": 1,
-        "Number of rows": 400,
-        "Frames in File": 1,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }
-
-Chip Test Board
-^^^^^^^^^^^^^^^
-
-.. code-block:: text
-
-    {
-        "Version": 7.2,
-        "Timestamp": "Wed Nov 13 15:32:59 2024",
-        "Detector Type": "ChipTestBoard",
-        "Timing Mode": "auto",
-        "Geometry": {
-            "x": 1,
-            "y": 1
-        },
-        "Image Size in bytes": 48018,
-        "Pixels": {
-            "x": 3,
-            "y": 1
-        },
-        "Max Frames Per File": 20000,
-        "Frame Discard Policy": "nodiscard",
-        "Frame Padding": 1,
-        "Scan Parameters": "[disabled]",
-        "Total Frames": 1,
-        "Receiver Roi": {
-            "xmin": 4294967295,
-            "xmax": 4294967295,
-            "ymin": 4294967295,
-            "ymax": 4294967295
-        },
-        "Exptime": "0ns",
-        "Period": "0.18s",
-        "Ten Giga": 0,
-        "ADC Mask": "0x2202",
-        "Analog Flag": 1,
-        "Analog Samples": 8003,
-        "Digital Flag": 0,
-        "Digital Samples": 1000,
-        "Dbit Offset": 0,
-        "Dbit Reorder": 1, 
-        "Dbit Bitset": 0,
-        "Transceiver Mask": "0x3",
-        "Transceiver Flag": 0,
-        "Transceiver Samples": 1,
-        "Frames in File": 1,
-        "Frame Header Format": {
-            "Frame Number": "8 bytes",
-            "SubFrame Number/ExpLength": "4 bytes",
-            "Packet Number": "4 bytes",
-            "Bunch ID": "8 bytes",
-            "Timestamp": "8 bytes",
-            "Module Id": "2 bytes",
-            "Row": "2 bytes",
-            "Column": "2 bytes",
-            "Reserved": "2 bytes",
-            "Debug": "4 bytes",
-            "Round Robin Number": "2 bytes",
-            "Detector Type": "1 byte",
-            "Header Version": "1 byte",
-            "Packets Caught Mask": "64 bytes"
-        }
-    }

docs/src/commandline.rst

@@ -1,105 +0,0 @@
-Command line interface
-==============================================
-
-Usage
--------------
-
-The syntax is *'[detector index]-[module index]:[command]'*, where the indices are by default '0', when not specified.
-
-.. _cl-module-index-label:
-
-Module index
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-Modules are indexed based on their order in the hostname command. They are used to configure a specific module within a detector and are followed by a ':' in syntax.
-
-    .. code-block::
-
-        # Applies to all modules of detector 0
-        sls_detector_put exptime 5s
-
-        # Applies to only the 4th module
-        sls_detector_put 3:exptime 5s
-
-
-Detector index
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-This index is useful when configuring multiple detectors from a single host. Each detector uses a unique shared memory identified by a detector index, derived again from the hostname command. It is followed by a '-'. 
-
-    .. code-block::
-
-        # For detector with index 2 in shared memory
-        sls_detector_put 2-hostname bchip133+bchip123+bchip456
-        
-        # Without '-', the detector index defaults to 0
-        sls_detector_put hostname bchip133+bchip123+bchip456
-
-        # Accessing all modules with detector index 2
-        sls_detector_put 2-exptime
-
-        # Starting acquisition only for detector with index 2
-        sls_detector_put 2-start
-
-        # Applies only to the 2nd detector, 4th module
-        sls_detector_put 1-3:exptime 5s
-
-
-Command Execution
-^^^^^^^^^^^^^^^^^^^^^^^
-Commands can be executed using:
-
-*   **sls_detector_put**: setting values
-*   **sls_detector_get**: getting values
-*   **sls_detector**: automatically infers based on the number of arguments.
-*   **sls_detector_help**: gets help on the specific command
-*   **sls_detector_acquire**: initiates acquisition with the detector. This command blocks until the entire acquisition process is completed.
-
-
-
-Help
---------
-
-.. code-block::
-
-    # get list of commands
-    sls_detector_get list
-
-    # search for a particular command using a word
-    sls_detector_get list | grep adc
-
-    # get help for a particular command
-    sls_detector_get -h fpath
-    sls_detector_help fpath
-
-    # list of deprecated commands
-    list deprecated
-
-
-Autocompletion
----------------
-
-bash_autocomplete.sh or zsh_autocomplete.sh must be sourced from the main package folder to enable auto completion of commands and arguments for the command line on that shell.
-
-.. code-block::
-
-    source bash_autocomplete.sh
-  
-
-Commands
------------
-
-.. include:: ../commands.rst
-
-
-Deprecated commands
-------------------------
-
-.. note ::
-	All the dac commands are preceded with the **dac** command. Use command **daclist** to get correct list of dac command arguments for current detector.
-
-.. csv-table:: Deprecated commands
-   :file: ../deprecated.csv
-   :widths: 35, 35
-   :header-rows: 1
-
-
-

docs/src/configcommands.rst

@@ -1,242 +0,0 @@
-.. _setup commands:
-
-Setup Commands
-================================
-
-
-Introduction
--------------
-
-To connect to any device, one needs a unique combination of **IP address** (which identifies the device) and **port number** (which specifies the service). 
-
-This package typically deals with two types of network interfaces:
-
-* **1 GbE public interface** - Accessible from anywhere on the network. Connectivity can be verified by pinging this interface from any PC.
-
-* **10 GbE private interface** - Dedicated to high-speed data transfer with a specific PC. In addition to the 1 GbE public interface (MTU 1500), the device may include one or more private 10 GbE interfaces (MTU 9000), which are not accessible from other machines.
-
-Client to Module
------------------
-
-.. figure:: images/Client_module_commands.png
-   :target: _images/Client_module_commands.png
-   :width: 700px
-   :align: center
-   :alt: Client Module Commands
-
-   Client Module TCP Commands
-
-The client configures and controls modules via the 1 GbE public TCP interface.
-
-* Should be able to ping the module's hostname from any PC on the network.
-* If one cannot ping, ensure that it is powered on.
-* If the command cannot connect to the port (`hostname command <commandline.html#term-hostname>`_ failed), the onboard servers may not have started yet.
-
-Each physical module has its own unique IP address. As the IPs are already different, all modules can share the same default ports:
-
-* 1952 - Default Module TCP Control Port
-* 1953 - Default Module TCP Stop port
-
-.. code-block:: bash  
-
-    # Therefore, one can use 
-    hostname bchip100+bchip101+
-    # instead of 
-    hostname bchip100:1952+bchip101:1954+
-
-
-**Simulators**, however, usually run on the same PC. See `virtual servers <https://slsdetectorgroup.github.io/devdoc/virtualserver.html>`_ for more details. In that case, each instance must use a different port. By incrementing port numbers, you can also use the virtual command for convenience.
-
-.. code-block:: bash  
-
-    # Therefore, one can use 
-    virtual 2 1952
-    # instead of 
-    hostname localhost:1952+localhost:1954+
-
-
-
-
-Client to Receiver
---------------------
-
-.. figure:: images/Client_receiver_commands.png
-   :target: _images/Client_receiver_commands.png
-   :align: center
-   :alt: Client Receiver Commands
-
-   Client Receiver TCP Commands
-
-Each module has a receiver, which can be either local or remote.
-
-The client can configure and control receivers via the 1 GbE public TCP interface:
-
-* Should be able to ping the receiver's hostname from any PC on the network.
-* If one cannot ping, ensure that it is powered on.
-* If the command cannot connect to the port (`rx_hostname command <commandline.html#term-rx_hostname-hostname-or-ip-address>`_ failed), the receivers may not have started yet.
-
-
-Since multiple receiver processes typically run on the same PC, they share the same IP. Here, each receiver process must use a different TCP port for a unique connection. 
-
-* 1954 - Default Receiver TCP port
-
-Configuring the receiver with the command `rx_hostname command <commandline.html#term-rx_hostname-hostname-or-ip-address>`_, sets up a receiver for every module in shared memory automatically ie. every module's receiver TCP port will automatically increment in shared memory. The starting port is defined by the command `rx_tcpport <commandline.html#term-rx_tcpport-port>`_ with the default being 1954.
-
-
-A multi-module command (without colon or module index) sets incremental ports starting from the specified port number.
-
-.. code-block:: bash  
-
-    hostname bchip100+bchip101+bchip102+bchip103+
-    rx_tcport 2000 # sets the receiver port to 2000, 2001, 2002, 2003
-
-
-For example, using default TCP ports (1954, 1955):
-
-.. code-block:: bash  
-
-    hostname bchip100+bchip101+
-    rx_hostname localhost
-    # Equivalent to:
-    rx_hostname localhost:1954+localhost:1955+
-    
-    # or set to another set of ports (automatically incremented)
-    rx_tcpport 1984
-    rx_hostname localhost
-    # instead of
-    rx_hostname localhost:1984+localhost:1985+
-
-
-
-
-Module to Receiver
--------------------
-
-.. figure:: images/Module_receiver_commands.png
-   :target: _images/Module_receiver_commands.png
-   :align: center
-   :alt: Module Receiver Commands
-
-   Module Receiver UDP Commands
-
-**10GbE Interface**
-
-The module typically sends images to the receiver via a 10 GbE private interface on the receiver PC, which has an MTU of 9000 to support jumbo packets. The private interface is not reachable from other machines, so it cannot be pinged from anywhere. 
-
-**Multiple UDP Packets**
-
-Images are split into UDP packets for transmission. Unlike TCP, UDP is connectionless and does not guarantee delivery. Therefore, the receiver PC must be tuned for reliable reception. See `Troubleshooting <https://slsdetectorgroup.github.io/devdoc/troubleshooting.html>`_.
-
-**UDP Configuration**
-
-Unlike TCP, the module (hardware) requires explicit configuration for sending images via UDP, including:
-
-* Source and destination IPs
-* Source and destination MAC addresses
-* Source and destination ports
-
-**UDP Destination**
-
-Info on where to send the image from the module to.
-
-**UDP Desination IP** - The IP of the receiver PC's 10 GbE interface, usually found via ``ifconfig``. Command: `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_. For 1GbE interface and for this command, one can use 'auto' as an argument, which will pick up the IP from the `rx_hostname command <commandline.html#term-rx_hostname-hostname-or-ip-address>`_.
-
-**UDP desintation MAC** - Also obtained from the interface using ``ifconfig``. For built-in receivers, the module configures this automatically from the ``UDP destination IP``. For custom receivers, it must be explicitly provided. Command: `udp_dstmac <commandline.html#term-udp_dstmac-x-x-x-x-x-x>`_
-
-**UDP destination port** - Ensure uniqueness if multiple users share the interface. Command: `udp_dstport <commandline.html#term-udp_dstport-n>`_
-
-* 50001 - Default Receiver UDP port
-
-
-**UDP Source**
-
-As it is a one-way communication (module to receiver with no reply or acknowledgements), info on the source of the image is more for debugging purposes and prevent packet rejection.
-
-**UDP source IP** - Must be on the same subnet as the destination IP (same first three octets) to prevent packet rejection by the receiver interface. For 1GbE interface and for this command (except for Eiger), one can use ``auto`` as an argument, which will pick up the IP from the `hostname command <commandline.html#term-hostname>`_. Command: `udp_srcip <commandline.html#term-udp_srcip-x.x.x.x-or-auto>`_
-
-.. code-block:: bash  
-
-    # 10 GbE interface
-    hostname bchip100
-    udp_dstip 10.0.2.1
-    udp_srcip 10.0.2.19
-    rx_hostname localhost
-
-    # 1 GbE interface
-    hostname bchip100
-    rx_hostname localhost
-    udp_dstip auto # this command uses IP from rx_hostname. So, it comes after.
-    udp_srcip auto # this command uses IP from hostname
-
-**UDP source MAC** - By default, it is set to ``aa:bb:cc:dd:xx:yy`` where ``xx`` and ``yy`` are module row and column indices to differentiate the modules while debugging. Command: `udp_srcmac <commandline.html#term-udp_srcmac-x-x-x-x-x-x>`_
-
-
-**UDP source port** - This is hardcoded in every module to the same value in the detector server and cannot be changed.
-
-Note: If there is a second UDP port on the module, use 'udp_dstport2' or 'udp_dstip2'etc. See `here <https://slsdetectorgroup.github.io/devdoc/dataformat.html>`_ for more detector specific info. 
-
-Receiver to GUI
------------------
-
-.. figure:: images/Receiver_gui_commands.png
-   :target: _images/Receiver_gui_commands.png
-   :align: center
-   :alt: Receiver GUI Commands
-
-   Receiver GUI Commands
-
-
-Enabling the GUI automatically streams images from the receiver via ZMQ sockets. Even without the GUI, streaming can be activated explicitly using the command `rx_zmqstream <commandline.html#term-rx_zmqstream-0-1>`_. ZMQ streaming uses TCP/IP, so the ports must be configured appropriately.
-
-**Receiver ZMQ Port** - Port from which the receiver streams ZMQ packets. Command: `rx_zmqport <commandline.html#term-rx_zmqport-port>`_
-
-* 30001 - Default Receiver ZMQ Port (stream out from)
-
-**Client ZMQ Port** - Port that the client ZMQ socket listens to. Command: `zmqport <commandline.html#term-zmqport-port>`_
-
-* 30001 - Default Client ZMQ Port (listens to)
-
-**Client ZMQ IP** - IP address the client ZMQ socket listens to. Command: `zmqip <commandline.html#term-zmqip-x.x.x.x>`_. By default, this is set to the IP of ``rx_hostname``, but can be set to any IP address that the client can reach.
-
-* Default: Receiver’s hostname (rx_hostname)
-
-
-.. note ::   
-
-    ``zmqport`` and ``zmqip`` need to be set up in shared memory before starting up the Gui. If the Gui is already running, change it in the Advanced Tab directly in the Gui.
-    
-    ``rx_zmqstream`` is set to 1 when the GUI is started, but has to be manually set back to 0 to disable zmq streaming in the receiver for better performance when not using the Gui.
-    
-    The GUI hwm (high water mark, which is like a measurement of the number of enqueued zmq packets) values are set to a low number (from library default of possibly 1000 to 2) to reduce the zmq buffer to display only some of the images. Resetting it back to -1 or 1000 should only matter if one plans to not use the Gui and still zmq stream without wanting to drop zmq images (eg. for external processing chain). 
-
-
-
-
-
-Receiver to External Processing
---------------------------------
-
-.. figure:: images/Receiver_external_process_commands.png
-   :target: _images/Receiver_external_process_commands.png
-   :align: center
-   :alt: Click to zoom
-
-   Receiver External Process Commands
-
-Images from the receiver can also be streamed to an external processing chain for further processing or storage. In this setup:
-
-* The external processor listens to the ZMQ ports and IPs that the receiver streams from.
-
-* The client ZMQ sockets now listen to the ports and IPs that the external processor streams from instead of the receiver.
-
-**Receiver ZMQ Port** - Port from which the receiver streams ZMQ packets. Command: `rx_zmqport <commandline.html#term-rx_zmqport-port>`_
-
-* 30001 - Default Receiver ZMQ Port (stream out from)
-
-**Client ZMQ Port** - Port that the client ZMQ socket listens to. Command: `zmqport <commandline.html#term-zmqport-port>`_. In this set up, it should listen to the zmq port that the external process is streaming out from.
-
-* 30001 - Default Client ZMQ Port (listens to)
-
-**Client ZMQ IP** - IP address the client ZMQ socket listens to. Command: `zmqip <commandline.html#term-zmqip-x.x.x.x>`_. By default, this is set to the IP of ``rx_hostname``, but in this set up, it should listen to the zmq IP that the external process is streaming out from.
-
-* Default: Receiver’s hostname (rx_hostname)

docs/src/consuming.rst

@@ -1,116 +0,0 @@
-Consuming slsDetectorPackage
-===============================
-
-Depending on how you want to build your integration with 
-slsDetectorPackage there are a few different ways to 
-consume our package. The recommended way is to use one of the 
-CMake approaches. 
-
-One can test with :ref:`detector simulators<Virtual Detector Servers>` before testing the API with a real detector or when a real detector is not at hand.
-
-CMake: slsDetectorPackage as submodule in your project
----------------------------------------------------------------
-
-If you are using CMake to build your integration and want to build everything
-in one go, we support adding slsDetectorPackage as a subfolder in your cmake project. 
-
-A minimal CMakeLists.txt could look like this: 
-
-.. code-block:: cmake
-
-    project(myDetectorIntegration)
-    cmake_minimum_required(VERSION 3.14)
-    add_subdirectory(slsDetectorPackage)
-
-    #Add your executable
-    add_executable(example main.cpp)
-    target_compile_features(example PRIVATE cxx_std_11)
-
-    #Link towards slsDetectorShared
-    target_link_libraries(example slsDetectorShared)
-
-A fully working example can be found at:
-
-https://github.com/slsdetectorgroup/cmake-subfolder-example
-
-
-CMake: find_package(slsDetectorPackage)
-------------------------------------------
-
-If you have compiled and installed slsDetectorPackage we also support
-find_package in CMake. If installed in a system wide location no path
-should be needed, otherwise specify cmake prefix path. 
-
-.. code-block:: cmake 
-
-    cmake_minimum_required(VERSION 3.14)
-    project(myintegration)
-
-    find_package(slsDetectorPackage 5.0 REQUIRED)
-    add_executable(example main.cpp)
-    target_link_libraries(example slsDetectorShared)
-
-
-Then assuming the slsDetectorPackage is installed in /path/to/sls/install
-you should be able to configure and build your project in this way. 
-
-.. code-block:: bash
-
-    cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=/path/to/sls/install
-    make
-
-
-A minimal example is available at: https://github.com/slsdetectorgroup/minimal-cmake
-
-
-CMake: find_package and conda
-----------------------------------
-
-.. note::
-
-    conda can also be used for installing dependencies such as zmq, Qt4 etc. 
-
-find_package(slsDetectorPackage) also works if you have installed slsDetectorPackage using conda.
-The only difference is that you point CMake to $CONDA_PREFIX 
-
-
-.. code-block:: bash
-
-    #assuming myenv contains slsdetlib
-    conda activate myenv
-    cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
-    make
-
-Depending on your system compiler you might also have to install gxx_linux-64 to compiled.
-
-No tools minimal approach
------------------------------
-
-While not recommended it is still possible to specify the include and library paths
-manually when invoking g++. This can sometimes be handy for a quick try. 
-
-.. code-block:: cpp
-
-    #include "sls/Detector.h"
-    #include <iostream>
-    int main(){
-
-        sls::Detector det;
-
-        //Get all values and print them
-        std::cout << "Hostname: " << det.getHostname() << "\n";
-        std::cout << "Type: " << det.getDetectorType() << "\n";
-        std::cout << "Udp ip: " << det.getSourceUDPIP() << "\n";
-
-
-        //Get mac addr 
-        const int module = 0;
-        auto mac = det.getSourceUDPMAC()[module];
-        std::cout << "Mac addr of module "<< module <<  " is " <<  mac.str() << '\n'; 
-
-    }     
-
-
-.. code-block:: bash
-
-    g++ -I/install/path/include/  -L/install/path/lib64/ myapp.cpp -lSlsDetector -lSlsSupport -Wl,-rpath=../install/path/lib64

docs/src/container_utils.rst

@@ -1,14 +0,0 @@
-ContainerUtils
-==================
-
-Helper functions to handle standard container compliant 
-containers. Supports array, vector, sls::Result etc.
-
-While not a part of the public API we aim not to change this
-interface too much. However, we don't give the same strong
-guarantees as for Detector etc. 
-
-Any reoccurring container operation should probably be added to
-this file.  
-
-.. doxygenfile:: container_utils.h

docs/src/dataformat.rst

@@ -1,330 +0,0 @@
-.. _data format:
-
-Detector Image Size and Format
-================================
-
-Each UDP port creates its own output file, which contains the data of the image transmitted over that port. More on number of files and naming for each file in the `File format <fileformat.html>`_ section.
-
-Jungfrau
--------------
-
-Single Port Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Jungfrau_module.png
-   :target: _images/Jungfrau_module.png
-   :width: 650px
-   :align: center
-   :alt: Jungfrau Module Single Port Configuration
-
-By default, only the outer 10GbE interface is enabled, transmitting the full image over a single UDP port. This results in one file per module containing the complete image.
-
-Total image size = 524,288 bytes 
-   - 8 chips (2 x 4 grid)
-   - 256 x 256 pixels (chip size)
-   - 2 bytes (pixel width)
-
-
-
-Double Port Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Jungfrau_two_port.png
-   :target: _images/Jungfrau_two_port.png
-   :width: 500px
-   :align: center
-   :alt: Jungfrau Module Two Port Configuration
-
-If both interfaces are enabled using the `numinterfaces <commandline.html#term-numinterfaces-1-2>`_ command on compatible hardware and firmware, the image splits into top and bottom halves sent over two UDP ports:
-
-   - The top half transmits via the inner interface (`udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ and `udp_dstip2 <commandline.html#term-udp_dstip2-x.x.x.x-or-auto>`_).
-
-   - The bottom half uses the outer interface(`udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_).
-
-The number of files per module equals the active UDP ports—two files per module when both interfaces are used.
-
-Image size per UDP port or File = 262,144 bytes
-    - **Complete Image size / 2**
-
-
-
-Read Partial Rows
-^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Jungfrau_read_rows.png
-   :target: _images/Jungfrau_read_rows.png
-   :width: 550px
-   :align: center
-   :alt: Jungfrau Module Read Partial Rows Configuration
-
-
-The number of image rows per port can be adjusted using the `readnrows <commandline.html#term-readnrows>`_ command. By default, 512 rows are read, but a smaller value centers the readout vertically (e.g., 8 rows reads 4 above and 4 below the center). Increasing the value symmetrically expands the region toward the top and bottom. Permissible values are multiples of 8.
-
-
-Total image size = 32,768 bytes 
-   - 8 chips (2 x 4 grid)
-   - **8** x 256 pixels (chip size: **8 rows**)
-   - 2 bytes (pixel width)
-
-Note: Still in prototype stage, writes complete image (padded or not depending on `rx_padding <commandline.html#term-rx_padding-0-1>`_ parameter) to file. Only the summary written to console in the receiver handles the `readnrows <commandline.html#term-readnrows>`_ to calculate to calculate complete images received. Only reduces network load, not file size. Use `rx_roi <commandline.html#term-rx_roi-xmin-xmax-ymin-ymax>`_ for file size.
-
-Moench
--------------
-
-Single Port Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Moench_module.png
-   :target: _images/Moench_module.png
-   :width: 550px
-   :align: center
-   :alt: Moench Module Single Port Configuration
-
-By default, only the outer 10GbE interface is enabled, transmitting the full image over a single UDP port. This results in one file per module containing the complete image.
-
-Total image size = 320,000 bytes 
-   - 400 x 400 pixels (chip size)
-   - 2 bytes (pixel width)
-
-
-
-Double Port Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Moench_two_port.png
-   :target: _images/Moench_two_port.png
-   :width: 400px
-   :align: center
-   :alt: Moench Module Two Port Configuration
-
-If both interfaces are enabled using the `numinterfaces <commandline.html#term-numinterfaces-1-2>`_ command on compatible hardware and firmware, the image splits into top and bottom halves sent over two UDP ports:
-
-   - The top half transmits via the inner interface (`udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ and `udp_dstip2 <commandline.html#term-udp_dstip2-x.x.x.x-or-auto>`_).
-
-   - The bottom half uses the outer interface(`udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_).
-
-The number of files per module equals the active UDP ports—two files per module when both interfaces are used.
-
-Image size per UDP port or File = 160,000 bytes
-    - **Complete Image size / 2**
-
-
-
-Read Partial Rows
-^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Moench_read_rows.png
-   :target: _images/Moench_read_rows.png
-   :width: 400px
-   :align: center
-   :alt: Moench Module Read Partial Rows Configuration
-
-
-The number of image rows per port can be adjusted using the `readnrows <commandline.html#term-readnrows>`_ command. By default, 400 rows are read, but a smaller value centers the readout vertically (e.g., 16 rows reads 8 above and 8 below the center). Increasing the value symmetrically expands the region toward the top and bottom. Permissible values are multiples of 16.
-
-
-Total image size = 12,800 bytes 
-   - **16** x 400 pixels (chip size: **16 rows**)
-   - 2 bytes (pixel width)
-
-Note: Still in prototype stage, writes complete image (padded or not depending on `rx_padding <commandline.html#term-rx_padding-0-1>`_ parameter) to file. Only the summary written to console in the receiver handles the read n rows to calculate complete images received. Only reduces network load, not file size. Use `rx_roi <commandline.html#term-rx_roi-xmin-xmax-ymin-ymax>`_ for file size.
-
-Eiger
--------------
-
-Default Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Eiger_module.png
-   :target: _images/Eiger_module.png
-   :width: 350px
-   :align: center
-   :alt: Eiger Module Default Configuration
-
-
-Each Eiger module has two independent identical readout systems (other than firmware), each with its own control port and `hostname <commandline.html#term-hostname>`_ to be configured with. They are referred to as the 'top' and 'bottom' half modules. The bottom half module is flipped vertically.
-
-Each half module has 2 parallel UDP ports for 2 chips each. The left UDP port is configured with `udp_dstport <commandline.html#term-udp_dstport-n>`_, while the right UDP port is configured with `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_. This is vice versa for the bottom half module.
-
-
-Image size per UDP port or File = 262,144 bytes 
-   - 2 chips (1 x 2 grid)
-   - 256 x 256 pixels (chip size)
-   - 2 bytes (default pixel width)
-
-
-The myth, the legend, the bottom ports: Demystifying them
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-
-.. figure:: images/Eiger_bottom_1.png
-   :target: _images/Eiger_bottom_1.png
-   :width: 350px
-   :align: center
-   :alt: Eiger Bottom as Firmware gets it
-
-   How the firmware gets the images
-
-
-.. figure:: images/Eiger_bottom_2.png
-   :target: _images/Eiger_bottom_2.png
-   :width: 350px
-   :align: center
-   :alt: Eiger Bottom after the firmware flips it horizontally
-
-   After the firmware flips it horizontally
-
-
-.. figure:: images/Eiger_bottom_3.png
-   :target: _images/Eiger_bottom_3.png
-   :width: 350px
-   :align: center
-   :alt: After the software swaps the udp ports
-
-   After the software swaps the udp ports
-
-
-.. figure:: images/Eiger_bottom_4.png
-   :target: _images/Eiger_bottom_4.png
-   :width: 400px
-   :align: center
-   :alt: After the gui has flipped the bottom vertically
-
-   After the gui has flipped the bottom vertically
-
-
-Note: The same process happens for the bottom 2 udp ports of the quad.
-
-
-Pixel width
-^^^^^^^^^^^^^
-
-The pixel width can be configured to 4, 8, 16 (default) or 32 bits using the command `dr <commandline.html#term-dr-value>`_. This affects image size per UDP port or file.
-
-Flip rows
-^^^^^^^^^^
-
-One can use the command `fliprows <commandline.html#term-fliprows-0-1>`_ to flip the rows vertically for the bottom or top half module. It is sent out to the reciever, but does not flip rows in the output file itself, but rather streams out this info via the json header and thus instructs the GUI to display them correctly.
-
-1GbE/ 10GbE Interfaces
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-Both UDP ports `udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ are used in Eiger as shows in the figure. Both of them can be set to use either the 1GbE or the 10GbE interface for data. The 1GbE interface is used also for control and configuration. For data, the 1GbE interface is enabled by default. It can be disabled by enabling the `tengiga <commandline.html#term-tengiga-0-1>`_ command and updating both the `udp_dstport <commandline.html#term-udp_dstport-n>`_ , `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ , `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_ commands to match the 1GbE or 10GbE interface. This setting only affects packetsize and number of packets, but does not affect the total image size. 
-
-Reducing network load
-^^^^^^^^^^^^^^^^^^^^^^
-
-**Activate**: By default, the `hostname <commandline.html#term-hostname>`_ command activates the respective half module it connects to, enabling all UDP ports. To deactivate an entire half module (i.e., both UDP ports), use the `activate <commandline.html#term-activate-0-1>`_ command. This disables both UDP ports for that half module, so no data is transmitted from it — only half of the module is read out. To specify which half module to activate or deactivate, use the module index (for Eiger, each half module has its own module index).
-
-
-**Datastream**: The `datastream <commandline.html#term-datastream-left-right-0-1>`_ command with arguments to specify which port can be used to disable the data streaming from one or both the two UDP ports in a half module. This allows for more flexible configurations, such as reading only two chips or one UDP port of a half module. To specify which half module to activate or deactivate, use the module index (for Eiger, each half module has its own module index).
-
-Note: Only the activated ports will write data as it does not make sense to write an empty file.
-
-**Read Partial Rows**: The number of image rows per port can be adjusted using the `readnrows <commandline.html#term-readnrows>`_ command. By default, 256 rows are read, but a smaller value centers the readout vertically (e.g., 8 rows reads 4 above and 4 below the center). Increasing the value symmetrically expands the region toward the top and bottom. Permissible values depend on dynamic range and 10GbE enable.
-
-.. image:: images/Eiger_read_rows.png
-   :target: _images/Eiger_read_rows.png
-   :width: 400px
-   :align: center
-   :alt: Eiger Module Read Partial Rows Configuration
-
-
-
-Total image size per UDP Port = 8,192 bytes 
-   - 2 chips (1 x 2 grid)
-   - **8** x 256 pixels (chip size: **8 rows**)
-   - 2 bytes (default pixel width)
-
-Note: Still in prototype stage, writes complete image (padded or not depending on `rx_padding <commandline.html#term-rx_padding-0-1>`_ parameter) to file. Only the summary written to console in the receiver handles the `readnrows <commandline.html#term-readnrows>`_ to calculate complete images received. Only reduces network load, not file size. Use `rx_roi <commandline.html#term-rx_roi-xmin-xmax-ymin-ymax>`_ for file size.
-
-Quad
-^^^^^^
-
-The Eiger quad is a special hardware configuration that uses only the top half-module to create a quad layout. In this setup, the second half of the top module—normally associated with the right-side UDP port—is used to represent the inverted bottom half of the quad.
-
-As with any standard half-module, it includes one control TCP port (with a hostname) and two UDP data ports (top and bottom). When the quad option is enabled, the firmware automatically flips the second UDP port vertically.
-
-In this configuration, the fliprows command cannot be used to flip the entire half-module. Instead, the receiver automatically includes row-flipping information only for the second UDP port in the JSON header, so the GUI can apply the correct orientation during display
-
-.. image:: images/Eiger_quad.png
-   :target: _images/Eiger_quad.png
-   :width: 300px
-   :align: center
-   :alt: Eiger Quad Configuration
-
-Image size per UDP port = same as a normal Eiger UDP port
-
-Mythen3 
--------------
-
-
-
-Default Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Mythen3_module.png
-   :target: _images/Mythen3_module.png
-   :align: center
-   :alt: Mythen3 Module Default Configuration
-
-Each Mythen3 module is a 1D detector with 10 chips, each with 128 channels. Each channel has 3 counters that are enabled by default.
-
-Image size = 15,360 bytes 
-   - 10 chips (1 x 10 grid)
-   - 128 channels
-   - 3 counters
-   - 4 bytes (default pixel width)
-
-Counters
-^^^^^^^^^^^
-
-If all 3 counters are enabeld, the frame size for each channel is multiplied by 3. The counters are stored consecutively per channel. One can disable one or more of the counters using the `counters <commandline.html#term-counters-i0-i1-i2-...>`_ command. The frame size will then be reduced accordingly.
-
-Image size = 10,240 bytes 
-   - 10 chips (1 x 10 grid)
-   - 128 channels
-   - 2 counters (0, 1 enabled)
-   - 4 bytes (default pixel width)
-
-Pixel width
-^^^^^^^^^^^^^
-
-The pixel width can be configured to 8, 16 or 32 (default) bits using the command `dr <commandline.html#term-dr-value>`_. 32 bits is actually 24 bits in the chip. This setting does affect image size.
-
-1GbE/ 10GbE Interfaces
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-
-The UDP port can be set to use either the 1GbE or the 10GbE interface for data. The 1GbE interface is used also for control and configuration. For data, the 10GbE interface is enabled by default. It can be disabled by using the `tengiga <commandline.html#term-tengiga-0-1>`_ command and updating the `udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_ commands to match the 1GbE or 10GbE interface. This setting only affects packetsize and number of packets, but does not affect the total image size. 
-
-
-Gotthard2
--------------
-
-
-Default Configuration
-^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-.. image:: images/Gotthard2_module.png
-   :target: _images/Gotthard2_module.png
-   :align: center
-   :alt: Gotthard2 Module Default Configuration
-
-Each Gotthard2 module is a 1D detector with 10 chips, each with 128 channels. 
-
-Image size = 2,560 bytes 
-   - 10 chips (1 x 10 grid)
-   - 128 channels
-   - 2 bytes (pixel width)
-
-Veto Info
-^^^^^^^^^^^
-
-One can enable veto data in the chip of the Gotthard2 module using the `veto <commandline.html#term-veto-0-1>`_ command. By default, this is disabled. This does not affect the image size as veto information is not sent out through the same 10GbE interface.
-
-One can either stream out the veto info through the low latency link (2.5 gbps) or for debugging purposes through another 10GbE interface.
-
-For debugging purposes, the veto info can be enabled using the `numinterfaces <commandline.html#term-numinterfaces-1-2>`_ command and the following parameters are updated: `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ and `udp_dstip2 <commandline.html#term-udp_dstip2-x.x.x.x-or-auto>`_. The veto data from this port is of course written to a separate file and is not combined in the virtual HDF5 file mapping (complete image mapped).
-
-

docs/src/dependencies.rst

@@ -1,76 +0,0 @@
-Dependencies
-=========================
-
-While we value few dependencies some libraries are required in 
-order to not have to reinvent the wheel. Due to the state of package
-management in C++ we decided to bundle some of them with our source
-code. These are found in the libs/ directory. 
-
------------------------
-Core
------------------------
-To use the basic building blocks, meaning sls_detector_get/put and 
-the shared libraries these are needed: 
-
- * Linux, preferably recent kernel (currently no cross platform support)
- * CMake >= 3.14 
- * C++17 compatible compiler. (We test with gcc and clang)
-
-.. note ::  
-    
-    For v9.x.x of slsDetectorPackage and older, C++11 compatible compiler.
-
-
------------------------
-Python bindings
------------------------
-
- * Python >= 3.8
- * pybind11 2.13.6 (packaged in libs)
-
-.. note ::  
-
-    Refer :ref:`pybind11 notes. <pybind for different slsDetectorPackage versions>`  
-
------------------------
-ZeroMQ
------------------------
-
- * Zeromq 4.3.4 (packaged in libs)
-
-.. note ::   
-
-    Refer :ref:`zeromq notes. <zeromq for different slsDetectorPackage versions>` 
-
------------------------
-GUI
------------------------
-
- * Qt 5.9
- * Qwt 6.1.5 (packaged in libs)
-
------------------------
-Moench executables
------------------------
-
- * libtiff
-
------------------------
-Documentation
------------------------
-
-The documentation that you are reading now is built with 
-
- * Doxygen (to extract C++ classes etc.)
- * Breathe (Sphinx plugin to handle doxygen xml)
- * Sphinx with sphinx_rtd_theme 
-
------------------------
-Packaged in libs/
------------------------
-
- * catch2 (unit testing)
- * rapidjson (streaming from receiver)
- * pybind11 (python bindings)  
- * qwt (gui plotting)
- * libzmq (streaming to/from receiver)

docs/src/detector.rst

@@ -1,18 +0,0 @@
-Detector
-==============================================
-
-The sls::Detector is the public API to control 
-detectors from C++. This API is also used internally
-for the Python bindings and the command line interface. 
-If a receiver has been configured, this is also controlled
-through this class.
-
-Most, if not all, functions are called in parallel
-and the return value is a thin std::vector wrapper 
-containing results from all modules. (:ref:`Result class<Result Class>`)
-
-Here are some :ref:`examples <Cplusplus Api Examples>` on how to use the API.
-
-.. doxygenclass:: sls::Detector
-   :members:
-   :undoc-members:

docs/src/examples.rst

@@ -1,119 +0,0 @@
-.. _Cplusplus Api Examples:
-
-
-
-Examples
-===========
-
-Setup 
-------------
-
-The examples here assume that you have compiled and installed slsDetectorPackage
-to ~/sls/install and that the option for SLS_USE_SIMULATOR was enabled. This also builds
-the virtual detector servers that we will be using for testing. 
-
-We also add ~/sls/detector/install/bin to the path for convenience. 
-
-Compile examples
--------------------
-
-The source code of the examples is available at:
-https://github.com/slsdetectorgroup/api-examples
-
-
-.. code-block:: bash
-
-    git clone https://github.com/slsdetectorgroup/api-examples.git
-    mkdir build && cd build
-    cmake ../api-examples -DCMAKE_PREFIX_PATH=~/sls/detector/install
-    make
-
-Below follows a short description of what is included in the examples.
-
-
-Running a config file [e1]
------------------------------
-
-
-.. code-block:: cpp
-
-    #include "sls/Detector.h"
-    ...
-    sls::Detector det;
-    det.loadConfig("path/to/config/file.config");
-
-
-
-To configure the connection between PC and detector the easiest 
-is to run a config file. For this example we first launch a virtual Jungfrau server and
-then set up the detector. 
-
-**Launch a virtual detector server**
-
-.. code-block:: bash
-
-    jungfrauDetectorServer_virtual
-
-This launches a virtual Jungfrau detector server. As default it uses port 1952 and 1953
-for communication over TCP. Most commands go on 1952 and only a few such as stop and status on 1953. 
-
-**Run example to configure**
-
-.. code-block:: bash
-
-    ./e1-config one_det_no_receiver.config
-    - 12:01:06.371 INFO: Shared memory deleted /slsDetectorPackage_multi_0_sls_0
-    - 12:01:06.371 INFO: Shared memory deleted /slsDetectorPackage_multi_0
-    - 12:01:06.372 INFO: Shared memory created /slsDetectorPackage_multi_0
-    - 12:01:06.376 INFO: Loading configuration file: one_det_no_receiver.config
-    - 12:01:06.376 INFO: Adding detector localhost
-    - 12:01:06.377 INFO: Shared memory created /slsDetectorPackage_multi_0_sls_0
-    - 12:01:06.377 INFO: Checking Detector Version Compatibility
-    - 12:01:06.378 INFO: Detector connecting - updating!
-    hostname [localhost]
-
-
-    Jungfrau detector with 1 modules configured
-
-
-Using the return type sls::Result [e2]
------------------------------------------
-
-Since many our detectors have multiple modules we cannot return
-a single value when reading from the Detector. Hostname, Ip and also
-for example exposure time can differ between modules. 
-
-Therefore we return Result<T> which is a thin wrapper around
-std::vector. 
-
-.. code-block:: cpp
-
-    sls::Result<int> res1{1, 1, 1};
-    std::cout << "res1: " << res1 << '\n';
-    res1.squash();
-    # return -1 if different
-    res1.squash(-1);
-    # throw exception with custom message if different
-    res1.tsquash("Values are different);
-
-
-
-Setting exposure time [e3]
------------------------------------------
-
-For setting times, like exposure time, period, delay etc. 
-we use std::chrono::duration. 
-
-Example 3 shows how to set and read exposure time as well
-as converting to floating point. 
-
-.. code-block:: cpp
-
-    #include "sls/Detector.h"
-    #include <chrono>
-    ...
-    std::chrono::microseconds t0{500};
-    det.setExptime(t0);
-
-
-

docs/src/fileformat.rst

@@ -1,75 +0,0 @@
-.. _file format:
-
-File format
-================================
-
-If `fwrite <commandline.html#term-fwrite-0-1>`_ is enabled, the receiver will write data to files. 
-
-Number of Files
-----------------
-
-Every acquisition will create a master file and data files. 
-
-An acquisition can have multiple data files for a single frame. The number of files is determined by the number of UDP ports per module and the number of modules.
-
-    * Every modules has its own receiver process. Every receiver process can have 1 or 2 UDP ports.
-    * Each UDP port will create its own file. Therefore, each receiver can write 1 or 2 files.
-    * So, for example a detector with 4 modules with 2 UDP ports each will create a total of 8 files with file names containing UDP port index **'_d0'** to **'_d7'**.
-
-A new file containing **'_f[file_index]'** in file name is also created when reaching the maximum frames per file. Configured using `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_.
-
-.. _file name format:
-
-Naming
--------
-| Master File Name: [fpath]/[fname]_master_[findex].[ext]
-
-
-| Data File Name: [fpath]/[fname]_dx_fy_[findex].[ext] 
-
-   * fpath: file path set using command `fpath <commandline.html#term-fpath-path>`_. Default: '/'
-   * fname: file name prefix using command `fname <commandline.html#term-fname-name>`_. Default: "run"
-   * findex: acquisition index using command `findex <commandline.html#term-findex-n_value>`_. Automatically incremented for every acquisition with `sls_detector_acquire <commandline.html#term-acquire>`_ (if `fwrite <commandline.html#term-fwrite-0-1>`_ enabled).
-   * x: unique udp port index. New file per UDP port.
-   * y: file index. New file created after reaching max frames per file.
-   * ext: file extension. Default: "raw"(data file) or "json"(master file)
-
-
-Some file name examples:
-
-    .. code-block:: bash
-
-        # first file
-        path-to-file/run_d0_f0_0.raw
-
-        # first file for second UDP port
-        path-to-file/run_d1_f0_0.raw
-
-        # second file after reaching max frames in first file
-        path-to-file/run_d0_f1_0.raw
-        
-        # second acquisition, first file
-        path-to-file/run_d0_f0_1.raw
-
-
-Formats
---------
-
-There are 2 file formats supported by the receiver:
-
-    * Binary - extension .json (master file) or .raw (data files)
-    * HDF5 - extension .h5
-
-The default is binary. HDF5 can be enabled by compiling the package with HDF5 option enabled. The file format is set using the command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
-
-
-Content
---------
-
-| `Master File`: Contains the metadata of the acquisition. The content is described in :ref:`master file attributes <master file attributes>`.
-
-
-| `Data File`: Contains the metadata for each image (:ref:`slsReceiverHeader<sls receiver header format>`) and the `data of the image` transmitted over that port. The image data is described in :ref:`Detector Image Size and Format <data format>` section.
-
-
-| More content and examples are found in the :ref:`HDF5 file format <hdf5 file format>` and :ref:`Binary file format <binary file format>` sections.

docs/src/firmware.rst

@@ -1,364 +0,0 @@
-.. _firmware upgrade:
-
-Firmware Upgrade
-=================
-
-Eiger
--------------
-
-Download 
-^^^^^^^^^^^^^
-- `bcp script <https://github.com/slsdetectorgroup/slsDetectorFirmware/blob/master/binaries/eiger/bcp>`__
-
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `bit files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-Upgrade
-^^^^^^^^
-#. Tftp must be already installed on your pc to use the bcp script.
-
-#. Copy new servers to the board. See :ref:`how to upgrade detector servers<Detector Server Upgrade>` for more detals. A reboot should have started the new linked servers automatically. For Eiger, do not reboot yet as we need to program the firmware via bit files.
-
-    * This step is crucial when registers between firmwares change. Failure to do so will result in linux on boards to crash and boards can't be pinged anymore.
-
-#. Bring the board into programmable mode using either of the 2 ways. Both methods result in only the central LED blinking.
-    
-    * **Manual:**
-    
-        Do a hard reset for each half module on back panel boards, between the LEDs, closer to each of the 1G ethernet connectors. Push until all LEDs start to blink.
-    
-    * Software:  
-
-        .. code-block:: bash
-
-            # Option 1: if the old server is still running:
-            sls_detector_put execcommand "./boot_recovery"
-
-            # Option 2:
-            ssh root@bebxxx
-            cd executables
-            ./boot_recovery
-
-#. Start a terminal for each half module and run the following to see progress.
-
-    .. code-block:: bash
-    
-    	nc -p 3000 -u bebxxx 3000
-        # Press enter twice to see prompt with board name.
-        > bebxxx
-        # After each bcp command, wait for this terminal to print "Success".
-
-
-#. In another terminal, run the following to update firmware. Please update bit files with great caution as it could make your board inaccessible, if done incorrectly.
-
-    .. code-block:: bash
-    
-        #update back end fpga
-        bcp download.bit bebxxx:/fw0
-
-        #update front left fpga
-        bcp download.bit bebxxx:/febl
-
-        #update front right fpga
-        bcp download.bit bebxxx:/febr
-
-        #update kernel (only if required by us)
-        bcp download.bit bebxxx:/kernel
-
-#. Reboot the detector.
-
-    .. code-block:: bash
-
-        # In the first terminal where we saw "Succeess"
-        # reconfig febX is necessary only if you have flashed a new feb firmware
-        reconfig febl
-        reconfig febr
-        # will reboot controller
-        reconfig fw0
-
-.. note :: 
-
-    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
-
-Jungfrau
--------------
-
-Download 
-^^^^^^^^^^^^^
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-
-Upgrade
-^^^^^^^^
-
-.. warning ::
-
-    In case you have had issues in the past with programming via software:
-
-    * 6.1.2 server has a fix for seamless fpga programming
-
-    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
-
-    * Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
-
-
-
-Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
-
-
-
-
-Program from console
-    .. code-block:: bash
-
-        # These instructions are for upgrades from v5.0.0. For earlier versions, please contact us.
-
-        # Always ensure that the client and server software are of the same release.
-
-        # copies server, links new server to jungfrauDetectorServer, 
-        # removes old server from respawn, sets up new lnked server to respawn
-        # programs fpga, reboots
-
-        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
-        sls_detector_put update jungfrauDetectorServervxxx pcxxx xx.pof
-
-        # v6.1.1 - present (copies server from the full path provided)
-        sls_detector_put update jungfrauDetectorServervxxx xx.pof
-
-        # Or only program firmware
-        sls_detector_put programfpga xxx.pof
-
-
-
-Mythen III
------------
-
-Download 
-^^^^^^^^^^^^^
-
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-
-Upgrade
-^^^^^^^^
-
-Program from console
-    .. code-block:: bash
-
-        # Always ensure that the client and server software are of the same release.
-
-        # copies server, links new server to mythen3DetectorServer, 
-        # removes old server from respawn, sets up new lnked server to respawn
-        # programs fpga, reboots
-
-        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
-        sls_detector_put update mythen3DetectorServervxxx pcxxx xxx.rbf
-
-        # v6.1.1 - present (copies server from the full path provided)
-        sls_detector_put update mythen3DetectorServervxxx xxx.rbf
-
-        # Or only program firmware
-        sls_detector_put programfpga xxx.rbf
-
-.. note :: 
-
-    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
-
-Gotthard II
--------------
-
-Download 
-^^^^^^^^^^^^^
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-Upgrade
-^^^^^^^^
-
-Program from console
-    .. code-block:: bash
-
-        # Always ensure that the client and server software are of the same release.
-        
-        # copies server, links new server to gotthard2DetectorServer, 
-        # removes old server from respawn, sets up new lnked server to respawn
-        # programs fpga, reboots
-
-        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
-        sls_detector_put update gotthard2DetectorServervxxx pcxxx xxx.rbf
-
-        # v6.1.1 - present (copies server from the full path provided)
-        sls_detector_put update gotthard2DetectorServervxxx xxx.rbf
-
-        # Or only program firmware
-        sls_detector_put programfpga xxx.rbf
-
-.. note :: 
-
-    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
-
-Moench
--------
-
-Download 
-^^^^^^^^^^^^^
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-
-
-Upgrade
-^^^^^^^^
-
-.. warning ::
-
-    In case you have had issues in the past with programming via software:
-
-    * 6.1.2 server has a fix for seamless fpga programming
-
-    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
-
-    * Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
-
-
-
-Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
-
-
-Program from console
-    .. code-block:: bash
-
-        # Always ensure that the client and server software are of the same release.
-
-        # copies server, links new server to moenchDetectorServer, 
-        # removes old server from respawn, sets up new lnked server to respawn
-        # programs fpga, reboots
-
-        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
-        sls_detector_put update moenchDetectorServervxxx pcxxx xx.pof
-
-        # v6.1.1 - present (copies server from the full path provided)
-        sls_detector_put update moenchDetectorServervxxx xx.pof
-
-        # Or only program firmware
-        sls_detector_put programfpga xxx.pof
-
-Ctb
-----
-
-Download 
-^^^^^^^^^^^^^
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-
-
-Upgrade
-^^^^^^^^
-
-Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
-
-
-Program from console
-    .. code-block:: bash
-
-        # Always ensure that the client and server software are of the same release.
-        
-        # copies server, links new server to ctbDetectorServer, 
-        # removes old server from respawn, sets up new lnked server to respawn
-        # programs fpga, reboots
-
-        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
-        sls_detector_put update ctbDetectorServervxxx pcxxx xx.pof
-
-        # v6.1.1 - present (copies server from the full path provided)
-        sls_detector_put update ctbDetectorServervxxx xx.pof
-
-        # Or only program firmware
-        sls_detector_put programfpga xxx.pof
-
-
-.. _blackfin firmware troubleshooting:
-
-Firmware Troubleshooting with blackfin
-----------------------------------------
-
-1. v4.x.x client after programming will most likely reboot the blackfin processor, regardless of error.
-
-2. v5.x.x-rcx client after programming will not reboot the blackfin processor, if error occurred.
-
-3. If a reboot occured with an incomplete firmware in flash, the blackfin will most likely not find the mtd3 drive. To see if this drive exists:
-
-  .. code-block:: bash
-    
-    # connect to the board
-    telnet bchipxxx
-
-    # view of mtd3 existing
-    root:/> more /proc/mtd
-    dev:    size   erasesize  name
-    mtd0: 00040000 00020000 "bootloader(nor)"
-    mtd1: 00100000 00020000 "linux kernel(nor)"
-    mtd2: 002c0000 00020000 "file system(nor)"
-    mtd3: 01000000 00010000 "bitfile(spi)"
-
-4. If one can see the mtd3 drive, one can already try to flash again using the **programfpga** command (without rebooting blackfin or detector). 
-
-5. If one can't list it, read the next section to try to get the blackfin to list it.
-
-How to get back mtd3 drive remotely (udpating kernel)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-    You have 2 alternatives to update the kernel.
-
-    1. Commands via software (>= v6.0.0)
-
-        .. code-block:: bash
-
-            sls_detector_put updatekernel /home/...path-to-kernel-image
-
-
-    2. or command line 
-    
-        .. code-block:: bash
-            
-            # step 1: get the kernel image (uImage.lzma) from slsdetectorgroup
-            # and copy it to pc's tftp folder
-
-            # step 2: connect to the board
-            telnet bchipxxx
-
-            #step 3: go to directory for space
-            cd /var/tmp/
-
-            # step 3: copy kernel to board
-            tftp pcxxx -r uImage.lzma -g
-
-            # step 4: verify kernel copied properly
-            ls -lrt
-            
-            # step 5: erase flash
-            flash_eraseall /dev/mtd1
-            
-            # step 6: copy new image to kernel drive
-            cat uImage.lzma > /dev/mtd1
-            
-            # step 7:
-            sync
-            
-            # step 8:
-            reboot
-            
-            # step 9: verification
-            telnet bchipxxx
-            uname -a # verify kernel date
-            more /proc/mtd # verify mtd3 is listed
-            
-

docs/src/gendoc.cpp

@@ -1,64 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-/**
- * Utility program to generate input files for the command line
- * documentation. Uses the string returned from sls_detector_help cmd
- *
- */
-#include <fstream>
-#include <iostream>
-#include <sstream>
-#include <string>
-#include <vector>
-
-#include "Caller.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-std::string replace_all(const std::string &src, const std::string &from,
-                        const std::string &to) {
-
-    std::string results;
-    std::string::const_iterator end = src.end();
-    std::string::const_iterator current = src.begin();
-    std::string::const_iterator next =
-        std::search(current, end, from.begin(), from.end());
-    while (next != end) {
-        results.append(current, next);
-        results.append(to);
-        current = next + from.size();
-        next = std::search(current, end, from.begin(), from.end());
-    }
-    results.append(current, next);
-    return results;
-}
-
-int main() {
-
-    std::cout << "Generating command line documentation!\n";
-
-    sls::Caller caller(nullptr);
-    auto commands = caller.getAllCommands();
-
-    std::ofstream fs("commands.rst");
-    fs << ".. glossary::\n";
-
-    for (const auto &cmd : commands) {
-        std::ostringstream os;
-        std::cout << cmd << '\n';
-        caller.call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
-
-        auto tmp = os.str().erase(0, cmd.size());
-        auto usage = tmp.substr(0, tmp.find_first_of('\n'));
-        tmp.erase(0, usage.size());
-        auto help = replace_all(tmp, "\n\t", "\n\t\t| ");
-        fs << '\t' << cmd << usage << help << "\n";
-    }
-
-    std::ofstream fs2("deprecated.csv");
-    fs2 << "Old, New\n";
-    auto cmds = caller.GetDeprecatedCommands();
-    for (auto it : cmds) {
-        fs2 << it.first << ", " << it.second << '\n';
-    }
-}

docs/src/hdf5fileformat.rst

@@ -1,91 +0,0 @@
-.. _hdf5 file format:
-
-HDF5 File Format
-================================
-
-Compilation
--------------
-
-#. Compile the package with HDF5 option enabled
-
-    #. Using cmk script: ./cmk.sh -hj9 -d [path of hdf5 dir] (-d is optional and for custom installation folder)
-
-    #. Enable using cmake option **-DSLS_USE_HDF5=ON** and **-DCMAKE_INSTALL_PREFIX=/path/to/custom/hdf/installation** (optional).
-
-
-Setup
--------
-
-#. Start Receiver process
-
-#. Load config file
-
-#. Set file format using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
-
-    .. code-block:: bash
-
-        sls_detector_put fformat hdf5
-
-
-Master File
--------------
-
-* File Name: [fpath]/[fname]_master_[findex].h5 :ref:`Details here<file name format>`
-
-* It contains  :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type.
-
-.. code-block:: text
-
-    /                                               # Root level
-    |---> entry                                     # entry group
-    |    |---> data                                 # data group
-    |         |---> column                          # dataset of each sls_receiver_header member
-    |         |---> data
-    |         |---> detector header version
-    |         |---> detector specific 1
-    |         |---> detector specific 2
-    |         |---> detector specific 3
-    |         |---> detector specific 4
-    |         |---> detector type
-    |         |---> exp length or sub exposure time
-    |         |---> frame number
-    |         |---> mod id
-    |         |---> packets caught
-    |         |---> packets caught bit mask
-    |         |---> row
-    |         |---> timestamp
-    |    |---> instrument                           # instrument group
-    |         |---> beam                            # beam group
-    |         |---> detector                        # detector group
-    |              |---> Master File Attribute 1    # dataset of each master file attribute
-    |              |---> Master File Attribute 2
-    |              |---> Master File Attribute 3
-    |              |---> Master File Attribute ..
-    |    |---> sample                               # sample group
-
-
-If more than 1 data file per frame:
-    * The dataset of each :ref:`**SLS Receiver Header** <sls receiver header format>` member is a virtual dataset.
-    * **data** dataset is a virtual dataset.
-
-
-More details regarding master file attributes can be found :ref:`here<master file attributes>`.
-
-Data File
------------
-
-* File Name: [fpath]/[fname]_dx_fy_[findex].h5 :ref:`Details here<file name format>`
-
-* More details on :ref:`slsReceiverHeader<sls receiver header format>` and the actual image data is described in the :ref:`Detector Image Size and Format <data format>` section.
-
-
-Virtual Data File
-------------------
-
-* File Name: [fpath]/[fname]_virtual_[findex].h5 :ref:`Details here<file name format>`
-
-* For multiple modules, a virtual file linking data from all the modules is created. The individual files are expected to be present.
-
-* It is linked in the master file.
-
-