udp_cleardst in fpga (#490)

* set number of destination in fpga as well when using udp_cleardst

* ensures fpga destinations are also cleared up

* binaries in

.clang-tidy

@@ -19,6 +19,7 @@ Checks:          '*,
                     -google-readability-braces-around-statements,
                     -modernize-use-trailing-return-type,
                     -readability-isolate-declaration,
+                    -readability-implicit-bool-conversion,
                     -llvmlibc-*'
 
 HeaderFilterRegex: \.h

CMakeLists.txt

@@ -8,11 +8,8 @@ set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
 
 cmake_policy(SET CMP0074 NEW)
 include(cmake/project_version.cmake)
-
-#functions to add compiler flags
 include(cmake/SlsAddFlag.cmake)
-
-# Include additional modules that are used unconditionally
+include(cmake/SlsFindZeroMQ.cmake)
 include(GNUInstallDirs)
 
 # If conda build, always set lib dir to 'lib'
@@ -26,7 +23,7 @@ string(TOLOWER "${PROJECT_NAME}" PROJECT_NAME_LOWER)
 
 # Set targets export name (used by slsDetectorPackage and dependencies)
 set(TARGETS_EXPORT_NAME "${PROJECT_NAME_LOWER}-targets")
-#set(namespace "${PROJECT_NAME}::")
+set(namespace "sls::")
 
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
 
@@ -37,6 +34,8 @@ if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
     set(SLS_MASTER_PROJECT ON)
 endif()
 
+
+
 option(SLS_USE_HDF5 "HDF5 File format" OFF)
 option(SLS_BUILD_SHARED_LIBRARIES "Build shared libaries" ON)
 option(SLS_USE_TEXTCLIENT "Text Client" ON)
@@ -69,6 +68,20 @@ if(SLS_BUILD_ONLY_MOENCH)
 endif()
 
 
+option(SLS_EXT_BUILD "external build of part of the project" OFF)
+if(SLS_EXT_BUILD)
+    message(STATUS "External build using already installed libraries")
+    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_DETECTOR OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_RECEIVER OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_MASTER_PROJECT OFF CACHE BOOL "No master proj in case of extbuild" FORCE) 
+endif()
+
+#Maybe have an option guarding this?
+set(SLS_INTERNAL_RAPIDJSON_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson)
+
 set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
                                     "libs/" 
                                     "slsDetectorCalibration/" 
@@ -79,9 +92,6 @@ set(ClangFormat_EXCLUDE_PATTERNS    "build/"
                                     ${CMAKE_BINARY_DIR})
 find_package(ClangFormat)
 
-
-
-
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
 if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
@@ -100,62 +110,68 @@ else()
 endif()
 
 
-#Add two fake libraries to manage options
-add_library(slsProjectOptions INTERFACE)
-add_library(slsProjectWarnings INTERFACE)
-target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
-target_compile_options(slsProjectWarnings INTERFACE 
-                                            -Wall
-                                            -Wextra
-                                            -Wno-unused-parameter
-                                            # -Wold-style-cast
-                                            -Wnon-virtual-dtor
-                                            -Woverloaded-virtual
-                                            -Wdouble-promotion
-                                            -Wformat=2
-                                            -Wredundant-decls
-                                            # -Wconversion
-                                            -Wvla
-                                            -Wdouble-promotion
-                                            -Werror=return-type
-                                 )
-
-#Settings for C code
-add_library(slsProjectCSettings INTERFACE)
-target_compile_options(slsProjectCSettings INTERFACE 
-                                            -std=gnu99 #fixed
-                                            -Wall
-                                            -Wextra
-                                            -Wno-unused-parameter
-                                            -Wdouble-promotion
-                                            -Wformat=2
-                                            -Wredundant-decls
-                                            -Wdouble-promotion
-                                            -Werror=return-type
-                                )
-
-
-#Testing for minimum version for compilers
-if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.2)
-        message(FATAL_ERROR "Clang version must be at least 3.2!")
-    endif()
-elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
-            message(FATAL_ERROR "GCC version must be at least 4.8!")
-    endif()
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5)
-            target_compile_options(slsProjectWarnings INTERFACE 
-                                             -Wno-missing-field-initializers)
-    endif()
+if(SLS_EXT_BUILD)
+    # Find ourself in case of external build
+    find_package(slsDetectorPackage ${PROJECT_VERSION} REQUIRED)
 endif()
 
-# Add or disable warnings depending on if the compiler supports them 
-# The function checks internally and sets HAS_warning-name
-sls_enable_cxx_warning("-Wnull-dereference")
-sls_enable_cxx_warning("-Wduplicated-cond")
-sls_disable_cxx_warning("-Wclass-memaccess")
-sls_disable_c_warning("-Wstringop-truncation")
+
+
+# slsProjectOptions and slsProjectWarnings are used
+# to control options for the libraries
+if(NOT TARGET slsProjectOptions)
+    add_library(slsProjectOptions INTERFACE)
+    target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
+endif()
+
+if (NOT TARGET slsProjectWarnings)
+    add_library(slsProjectWarnings INTERFACE)
+    target_compile_options(slsProjectWarnings INTERFACE 
+        -Wall
+        -Wextra
+        -Wno-unused-parameter
+        # -Wold-style-cast
+        -Wnon-virtual-dtor
+        -Woverloaded-virtual
+        -Wdouble-promotion
+        -Wformat=2
+        -Wredundant-decls
+        # -Wconversion
+        -Wvla
+        -Wdouble-promotion
+        -Werror=return-type
+    )
+    # Add or disable warnings depending on if the compiler supports them 
+    # The function checks internally and sets HAS_warning-name
+    sls_enable_cxx_warning("-Wnull-dereference")
+    sls_enable_cxx_warning("-Wduplicated-cond")
+    sls_disable_cxx_warning("-Wclass-memaccess")
+
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5 AND "${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
+            target_compile_options(slsProjectWarnings INTERFACE 
+                                                -Wno-missing-field-initializers)
+    endif()
+
+
+endif()
+
+
+if (NOT TARGET slsProjectCSettings)
+    #Settings for C code
+    add_library(slsProjectCSettings INTERFACE)
+    target_compile_options(slsProjectCSettings INTERFACE 
+                                                -std=gnu99 #fixed
+                                                -Wall
+                                                -Wextra
+                                                -Wno-unused-parameter
+                                                -Wdouble-promotion
+                                                -Wformat=2
+                                                -Wredundant-decls
+                                                -Wdouble-promotion
+                                                -Werror=return-type
+                                    )
+    sls_disable_c_warning("-Wstringop-truncation")
+endif()
 
 
 if(SLS_USE_SANITIZER)
@@ -170,58 +186,22 @@ if(SLS_TUNE_LOCAL)
 endif()
 
 
-#rapidjson
-add_library(rapidjson INTERFACE)
-target_include_directories(rapidjson INTERFACE
-    $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson>  
-)
-
-# Install fake the libraries
-install(TARGETS slsProjectOptions slsProjectWarnings rapidjson
+if(SLS_MASTER_PROJECT)
+install(TARGETS slsProjectOptions slsProjectWarnings 
     EXPORT "${TARGETS_EXPORT_NAME}"
     LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
     ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
     PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
 )
+endif()
 
 set(CMAKE_POSITION_INDEPENDENT_CODE ON)
 set(CMAKE_INSTALL_RPATH $ORIGIN)
-# set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
 
 
-set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
-#Adapted from: https://github.com/zeromq/cppzmq/
-if (NOT TARGET libzmq)
-    if(ZeroMQ_HINT)
-        message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
-        find_package(ZeroMQ 4 
-            NO_DEFAULT_PATH
-            HINTS ${ZeroMQ_DIR}
-        )
-    else()
-        find_package(ZeroMQ 4 QUIET)
-    endif()
+custom_find_zmq()
 
-  # libzmq autotools install: fallback to pkg-config
-  if(NOT ZeroMQ_FOUND)
-    message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
-    list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/libzmq-pkg-config)
-    find_package(ZeroMQ 4 REQUIRED)
-  endif()
-
-  # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
-  if(NOT ZeroMQ_FOUND)
-    message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
-  endif()
-
-  if (ZeroMQ_FOUND AND NOT TARGET libzmq)
-    message(FATAL_ERROR "ZeroMQ version not supported!")
-  endif()
-endif()
-
-get_target_property(VAR libzmq INTERFACE_INCLUDE_DIRECTORIES)
-message(STATUS "zmq: ${VAR}")
 
 if (SLS_USE_TESTS)
     enable_testing()
@@ -229,8 +209,9 @@ if (SLS_USE_TESTS)
 endif(SLS_USE_TESTS)
 
 
-# Common functionallity to detector and receiver
-add_subdirectory(slsSupportLib)
+if(NOT SLS_EXT_BUILD)
+    add_subdirectory(slsSupportLib)
+endif()
 
 if (SLS_USE_DETECTOR OR SLS_USE_TEXTCLIENT)
     add_subdirectory(slsDetectorSoftware)
@@ -254,7 +235,7 @@ endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
     find_package (Python 3.6 COMPONENTS Interpreter Development)
-    add_subdirectory(libs/pybind11)
+    add_subdirectory(libs/pybind11  ${CMAKE_BINARY_DIR}/bin/)
     add_subdirectory(python)
 endif(SLS_USE_PYTHON)
 

RELEASE.txt

@@ -57,6 +57,32 @@ This document describes the differences between v7.0.0 and v6.x.x
 - ctb: can set names for all the dacs
 - fpga/kernel programming, checks if drive is a special file and not a normal file
 - gotthard 25 um image reconstructed in gui and virtual hdf5 (firmware updated for slave to reverse channels)
+- master binary file in json format now
+- fixed bug introduced in 6.0.0: hdf5 files created 1 file per frame after the initial file which had maxframesperfile
+- rx_roi
+- m3 polarity, interpolation (enables all counters when enabled), pump probe, analog pulsing, digital pulsing
+- updatedetectorserver - removes old server current binary pointing to for blackfin
+- removing copydetectorserver using tftp 
+- registerCallBackRawDataReady and registerCallBackRawDataModifyReady now gives a sls_receiver_header* instead of a char*, and uint32_t to size_t
+- registerCallBackStartAcquisition gave incorrect imagesize (+120 bytes). corrected.
+- registerCallBackStartAcquisition parameter is a const string reference
+- m3 (runnig config second time with tengiga 0, dr !=32, counters !=0x7) calculated incorrect image size expected
+- fixed row column indexing (mainly for multi module Jungfrau 2 interfaces )
+- eiger gui row indices not flipped anymore (fix in config)
+- m3 (settings dac check disabled temporarily?)
+- m3 virtual server sends the right pacets now
+- gap pixels in gui enabled by default
+- rxr src files and classes (detectordata, ZmqSocket, helpDacs) added to sls namespace, and macros (namely from logger (logINFO etc)), slsDetectorGui (make_unique in implemtnation requires sls nemspace (points to std otherwise) but not deectorImpl.cpp)
+- blackfin programing made seamless (nCE fixed which helps)
+-save settings file for m3 and eiger
+- m3 threshold changes
+- g2 and m3 clkdiv 2 (system clock) change should affect time settings (g2: exptime, period, delayaftertrigger, burstperiod, m3: exptime, gatedelay, gateperiod, period, delayaftertrigger)
+- g2 system frequency is the same irrespective of timing source
+- (apparently) rxr doesnt get stuck anymore from 6.1.1
+- rxr mem size changed (fifo header size from 8 to 16) due to sls rxr header = 112.. 112+ 16=128 (reduces packet losss especially for g2)
+-udp_srcip and udp_Srcip2: can set to auto (for virtual or 1g data networks)
+- set dataset name for all hdf5 files to "data" only
+- number of storage cells is not updated in teh receiver. done. and also allowing it to be modified in running status
 
 2. Resolved Issues
 ==================

cmake/SlsFindZeroMQ.cmake

@@ -0,0 +1,38 @@
+function(custom_find_zmq)
+    set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
+    #Adapted from: https://github.com/zeromq/cppzmq/
+    if (NOT TARGET libzmq)
+        if(ZeroMQ_HINT)
+            message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
+            find_package(ZeroMQ 4 
+                NO_DEFAULT_PATH
+                HINTS ${ZeroMQ_HINT}
+            )
+        else()
+            find_package(ZeroMQ 4 QUIET)
+        endif()
+        
+    # libzmq autotools install: fallback to pkg-config
+    if(ZeroMQ_FOUND)
+        message(STATUS "Found libzmq using find_package")
+    else()
+        message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
+        list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/cmake/libzmq-pkg-config)
+        find_package(ZeroMQ 4 REQUIRED)
+    endif()
+
+    # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
+    if(NOT ZeroMQ_FOUND)
+        message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
+    endif()
+
+    if (ZeroMQ_FOUND AND NOT TARGET libzmq)
+        message(FATAL_ERROR "ZeroMQ version not supported!")
+    endif()
+    endif()
+
+    get_target_property(VAR libzmq IMPORTED_LOCATION)
+    message(STATUS "Using libzmq: ${VAR}")
+
+
+endfunction()

cmake/libzmq-pkg-config/FindZeroMQ.cmake

@@ -0,0 +1,36 @@
+#From: https://github.com/zeromq/cppzmq/
+set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
+find_package(PkgConfig)
+pkg_check_modules(PC_LIBZMQ QUIET libzmq)
+
+set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
+
+find_path(ZeroMQ_INCLUDE_DIR zmq.h
+        PATHS ${ZeroMQ_DIR}/include
+        ${PC_LIBZMQ_INCLUDE_DIRS}
+)
+
+find_library(ZeroMQ_LIBRARY
+        NAMES zmq
+        PATHS ${ZeroMQ_DIR}/lib
+        ${PC_LIBZMQ_LIBDIR}
+        ${PC_LIBZMQ_LIBRARY_DIRS}
+)
+
+if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
+    set(ZeroMQ_FOUND ON)
+    message(STATUS "Found libzmq using PkgConfig")
+endif()
+
+set ( ZeroMQ_LIBRARIES ${ZeroMQ_LIBRARY} )
+set ( ZeroMQ_INCLUDE_DIRS ${ZeroMQ_INCLUDE_DIR} )
+
+if (NOT TARGET libzmq)
+    add_library(libzmq UNKNOWN IMPORTED)
+    set_target_properties(libzmq PROPERTIES
+            IMPORTED_LOCATION ${ZeroMQ_LIBRARIES}
+            INTERFACE_INCLUDE_DIRECTORIES ${ZeroMQ_INCLUDE_DIRS})
+endif()
+
+include ( FindPackageHandleStandardArgs )
+find_package_handle_standard_args ( ZeroMQ DEFAULT_MSG ZeroMQ_LIBRARIES ZeroMQ_INCLUDE_DIRS )

cmake/package_config.cmake

@@ -26,7 +26,7 @@ install(FILES
 )
 
 install(FILES
-  "${CMAKE_SOURCE_DIR}/libzmq-pkg-config/FindZeroMQ.cmake"
+  "${CMAKE_SOURCE_DIR}/cmake/libzmq-pkg-config/FindZeroMQ.cmake"
   COMPONENT devel
   DESTINATION ${CMAKE_INSTALL_DIR}/libzmq-pkg-config
 )

conda-recepie/copy_lib.sh

@@ -19,4 +19,4 @@ cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
 
 
 cp build/install/include/sls/* $PREFIX/include/sls
-cp -r build/install/share/ $PREFIX/share
+cp -rv build/install/share $PREFIX

ctbGui/ctbAcquisition.cpp

@@ -828,14 +828,14 @@ void ctbAcquisition::setCanvas(TCanvas* c) {
   myCanvas->AddExec("dynamic",Form("((ctbAcquisition*)%p)->canvasClicked()",this));
   // myCanvas->AddExec("ex","canvasClicked()");
 }
-void ctbAcquisition::dataCallback(detectorData *data, long unsigned int index, unsigned int dum, void* pArgs) {
+void ctbAcquisition::dataCallback(sls::detectorData *data, long unsigned int index, unsigned int dum, void* pArgs) {
 
   // return 
   ((ctbAcquisition*)pArgs)->plotData(data,index);
 }
 
 
-int ctbAcquisition::plotData(detectorData *data, int index) {
+int ctbAcquisition::plotData(sls::detectorData *data, int index) {
 
   /*
 ******************************************************************

ctbGui/ctbAcquisition.h

@@ -28,8 +28,8 @@ class TGTextButton;
 namespace sls
 {
    class Detector;
+   class detectorData;
 };
-class detectorData;
 
 template <class dataType> class slsDetectorData;
 
@@ -201,10 +201,10 @@ class ctbAcquisition : public TGGroupFrame {
    void setBitGraph (int i ,int en, Pixel_t col);
    void startAcquisition();
    static   void progressCallback(double,void*);
-   static void dataCallback(detectorData*, long unsigned int, unsigned int,  void*);
+   static void dataCallback(sls::detectorData*, long unsigned int, unsigned int,  void*);
    int StopFlag;
    
-   int plotData(detectorData*, int);
+   int plotData(sls::detectorData*, int);
 
    void setPatternFile(const char* t);
 

docs/src/gendoc.cpp

@@ -45,6 +45,7 @@ int main() {
 
     for (const auto &cmd : commands) {
         std::ostringstream os;
+        std::cout << cmd << '\n';
         proxy.Call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
 
         auto tmp = os.str().erase(0, cmd.size());

docs/src/pygettingstarted.rst

@@ -136,7 +136,7 @@ can use dir()
     '__str__', '__subclasshook__', '_adc_register', '_frozen', 
     '_register', 'acquire', 'adcclk', 'adcphase', 'adcpipeline', 
     'adcreg', 'asamples', 'auto_comp_disable', 'clearAcquiringFlag', 
-    'clearBit', 'clearROI', 'client_version', 'config', 'copyDetectorServer', 
+    'clearBit', 'clearROI', 'client_version', 'config',  
     'counters', 'daclist', 'dacvalues', 'dbitclk', 'dbitphase' ...
 
 Since the list for Detector is rather long it's an good idea to filter it. 

docs/src/serverupgrade.rst

@@ -5,17 +5,42 @@ Detector Server Upgrade
 
 **Location:** slsDetectorPackage/serverBin/ folder for every release.
 
+.. note :: 
+
+    For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+ .. note :: 
+
+    Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
+
+
+From 6.1.1 and above (no tftp required)
+---------------------------------------
+
+#. Program from console
+
+    .. code-block:: bash
+
+        # the following command copies new server, creates a soft link to xxxDetectorServerxxx
+        # [Jungfrau][CTB][Moench] also deletes the old server binary and edits initttab to respawn server on reboot
+        # Then, the detector controller will reboot (except Eiger)
+        sls_detector_put updatedetectorserver /complete-path-to-binary/xxxDetectorServerxxx
+
+#. Copy the detector server specific config files or any others required to the detector:
+
+   .. code-block:: bash
+
+        sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
+
+5.0.0 - 6.1.1
+--------------
 
 #. Install tftp and copy detector server binary to tftp folder
 #. Program from console
 
-    .. note :: 
-
-        These instructions are for upgrades from v5.0.0. For earlier versions, contact us.
-
     .. code-block:: bash
 
-        # copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
+        # the following command copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
         # [Jungfrau][CTB][Moench] also edits initttab to respawn server on reboot
         # Then, the detector controller will reboot (except Eiger)
         sls_detector_put copydetectorserver xxxDetectorServerxxx pcxxx
@@ -27,18 +52,15 @@ Detector Server Upgrade
         sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
 
 
-.. note :: 
-
-    For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
-
- .. note :: 
-
-    Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
-
-
-Errors
-------
+Troubleshooting with tftp
+^^^^^^^^^^^^^^^^^^^^^^^^^
 
 #. tftp write error: There is no space left. Please delete some old binaries and try again.
 
 #. text file busy: You are trying to copy the same server.
+
+
+Older than 5.0.0
+-----------------
+
+Please contact us.

integrationTests/test-eigerIntegration.cpp

@@ -6,6 +6,8 @@
 #include "tests/globals.h"
 #include <iostream>
 
+namespace sls {
+
 class MultiDetectorFixture {
   protected:
     DetectorImpl d;
@@ -136,7 +138,7 @@ TEST_CASE_METHOD(MultiDetectorFixture, "Get ID", "[.eigerintegration][cli]") {
     std::string hn = test::hostname;
     hn.erase(std::remove(begin(hn), end(hn), 'b'), end(hn));
     hn.erase(std::remove(begin(hn), end(hn), 'e'), end(hn));
-    auto hostnames = sls::split(hn, '+');
+    auto hostnames = split(hn, '+');
     CHECK(hostnames.size() == d.getNumberOfDetectors());
     for (int i = 0; i != d.getNumberOfDetectors(); ++i) {
         CHECK(d.getId(defs::DETECTOR_SERIAL_NUMBER, 0) ==
@@ -198,3 +200,5 @@ TEST_CASE_METHOD(MultiDetectorFixture, "rate correction",
     d.setRateCorrection(200);
     CHECK(d.getRateCorrection() == 200);
 }
+
+} // namespace sls

integrationTests/test-integrationDectector.cpp

@@ -24,6 +24,8 @@
 // extern std::string detector_type;
 // extern dt type;
 
+namespace sls {
+
 TEST_CASE("Single detector no receiver", "[.integration][.single]") {
     auto t = Module::getTypeFromDetector(test::hostname);
     CHECK(t == test::type);
@@ -283,14 +285,14 @@ TEST_CASE(
     CHECK(m.getRateCorrection() == ratecorr);
 
     // ratecorr fail with dr 4 or 8
-    CHECK_THROWS_AS(m.setDynamicRange(8), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setDynamicRange(8), RuntimeError);
     CHECK(m.getRateCorrection() == 0);
     m.setDynamicRange(16);
     m.setDynamicRange(16);
     m.setRateCorrection(ratecorr);
     m.setDynamicRange(16);
     m.setRateCorrection(ratecorr);
-    CHECK_THROWS_AS(m.setDynamicRange(4), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setDynamicRange(4), RuntimeError);
     CHECK(m.getRateCorrection() == 0);
 }
 
@@ -329,11 +331,11 @@ TEST_CASE("Chiptestboard Loading Patterns", "[.ctbintegration]") {
     m.setPatternWord(addr, word);
     CHECK(m.setPatternWord(addr, -1) == word);
     addr = MAX_ADDR;
-    CHECK_THROWS_AS(m.setPatternWord(addr, word), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPatternWord(addr, word), RuntimeError);
     CHECK_THROWS_WITH(m.setPatternWord(addr, word),
                       Catch::Matchers::Contains("be between 0 and"));
     addr = -1;
-    CHECK_THROWS_AS(m.setPatternWord(addr, word), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPatternWord(addr, word), RuntimeError);
     CHECK_THROWS_WITH(m.setPatternWord(addr, word),
                       Catch::Matchers::Contains("be between 0 and"));
 
@@ -408,7 +410,7 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert",
     CHECK(m.getReceiverDbitList().size() == 10);
 
     list.push_back(64);
-    CHECK_THROWS_AS(m.setReceiverDbitList(list), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setReceiverDbitList(list), RuntimeError);
     CHECK_THROWS_WITH(m.setReceiverDbitList(list),
                       Catch::Matchers::Contains("be between 0 and 63"));
 
@@ -476,7 +478,7 @@ TEST_CASE("Eiger or Jungfrau nextframenumber",
     CHECK(m.acquire() == slsDetectorDefs::OK);
     CHECK(m.getReceiverCurrentFrameIndex() == val);
 
-    CHECK_THROWS_AS(m.setNextFrameNumber(0), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setNextFrameNumber(0), RuntimeError);
 
     if (m.getDetectorTypeAsString() == "Eiger") {
         val = 281474976710655;
@@ -511,8 +513,10 @@ TEST_CASE("Eiger partialread", "[.eigerintegration][partialread]") {
     m.setDynamicRange(8);
     m.setPartialReadout(256);
     CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setPartialReadout(1), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(1), RuntimeError);
     CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setPartialReadout(0), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(0), RuntimeError);
     m.setPartialReadout(256);
 }
+
+} // namespace sls

integrationTests/test-integrationMulti.cpp

@@ -6,10 +6,12 @@
 #include "tests/globals.h"
 #include <iostream>
 
+namespace sls {
+
 using namespace Catch::literals;
 
 TEST_CASE("Initialize a multi detector", "[.integration][.multi]") {
-    auto hostnames = sls::split(test::hostname, '+');
+    auto hostnames = split(test::hostname, '+');
 
     DetectorImpl d(0, true, true);
     d.setHostname(test::hostname.c_str());
@@ -102,3 +104,6 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
 
     d.freeSharedMemory();
 }
+
+} // namespace sls
+

libzmq-pkg-config/FindZeroMQ.cmake

@@ -1,27 +0,0 @@
-#From: https://github.com/zeromq/cppzmq/
-set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
-find_package(PkgConfig)
-pkg_check_modules(PC_LIBZMQ QUIET libzmq)
-
-set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
-find_library(ZeroMQ_LIBRARY NAMES libzmq.so libzmq.dylib libzmq.dll
-             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
-find_library(ZeroMQ_STATIC_LIBRARY NAMES libzmq-static.a libzmq.a libzmq.dll.a
-             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
-
-if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
-    set(ZeroMQ_FOUND ON)
-endif()
-
-if (TARGET libzmq)
-    # avoid errors defining targets twice
-    return()
-endif()
-
-add_library(libzmq SHARED IMPORTED)
-set_property(TARGET libzmq PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
-set_property(TARGET libzmq PROPERTY IMPORTED_LOCATION ${ZeroMQ_LIBRARY})
-
-add_library(libzmq-static STATIC IMPORTED ${PC_LIBZMQ_INCLUDE_DIRS})
-set_property(TARGET libzmq-static PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
-set_property(TARGET libzmq-static PROPERTY IMPORTED_LOCATION ${ZeroMQ_STATIC_LIBRARY})

python/slsdet/detector.py

@@ -1442,20 +1442,21 @@ class Detector(CppDetectorApi):
     @property
     def trimbits(self):
         """
-        [Eiger][Mythen3] Loads custom trimbit file to detector. 
+        [Eiger][Mythen3] Loads/Saves custom trimbit file to detector. 
         
         Note
         -----
         If no extension specified, serial number of each module is attached.
 
-        :getter: Not implemented
+        :setter: Loads the trimbit file to detector
+        :getter: Saves the trimbits from the detector to file. Not implemented with 'trimbits'. Use saveTrimbits().
 
         Example
         -------
         >>> d.trimbits = '/path_to_file/noise'
         - 14:53:27.931 INFO: Settings file loaded: /path_to_file/noise.sn000
         """
-        return NotImplementedError("trimbits are set only")
+        raise NotImplementedError('trimbits is set only. Use saveTrimbits()')
 
     @trimbits.setter
     def trimbits(self, fname):
@@ -1833,13 +1834,13 @@ class Detector(CppDetectorApi):
     @property
     @element
     def threshold(self):
-        """[Eiger] Threshold in eV
+        """[Eiger][Mythen3] Threshold in eV
         
         Note
         ----
         To change settings as well or set threshold without trimbits, use setThresholdEnergy.
 
-        :setter: It loads trim files from settingspath.
+        :setter: It loads trim files from settingspath.\n [Mythen3] An energy of -1 will pick up values from detector.
         """
         if self.type == detectorType.MYTHEN3:
             return self.getAllThresholdEnergy()
@@ -2617,7 +2618,7 @@ class Detector(CppDetectorApi):
         -------
         >>> d.vetophoton = (2, 24, 2560, '/tmp/bla.txt')
         """
-        raise NotImplementedError('vetofile is set only')
+        raise NotImplementedError('vetophoton is set only')
 
     @vetophoton.setter
     def vetophoton(self, args):
@@ -3498,10 +3499,60 @@ class Detector(CppDetectorApi):
 
     def readout(self):
         """
-        Mythen3] Starts detector readout. Status changes to TRANSMITTING and automatically returns to idle at the end of readout.
+        [Mythen3] Starts detector readout. Status changes to TRANSMITTING and automatically returns to idle at the end of readout.
         """
         self.startDetectorReadout()
     
+    @property
+    @element
+    def polarity(self):
+        """[Mythen3] Set positive or negative polarity. Enum: polarity"""
+        return self.getPolarity()
+
+    @polarity.setter
+    def polarity(self, value):
+        ut.set_using_dict(self.setPolarity, value)
+
+    @property
+    @element
+    def interpolation(self):
+        """[Mythen3] Enable or disable interpolation.  interpolation mode enables all counters and disables vth3. Disabling sets back counter mask and vth3. """
+        return self.getInterpolation()
+
+    @interpolation.setter
+    def interpolation(self, value):
+        ut.set_using_dict(self.setInterpolation, value)
+
+    @property
+    @element
+    def pumpprobe(self):
+        """[Mythen3] Enable or disable pump probe mode. Pump probe mode only enables vth2. Disabling sets back to previous value """
+        return self.getPumpProbe()
+
+    @pumpprobe.setter
+    def pumpprobe(self, value):
+        ut.set_using_dict(self.setPumpProbe, value)
+
+    @property
+    @element
+    def apulse(self):
+        """[Mythen3] Enable or disable analog pulsing. """
+        return self.getAnalogPulsing()
+
+    @apulse.setter
+    def apulse(self, value):
+        ut.set_using_dict(self.setAnalogPulsing, value)
+
+    @property
+    @element
+    def dpulse(self):
+        """[Mythen3] Enable or disable digital pulsing. """
+        return self.getDigitalPulsing()
+
+    @dpulse.setter
+    def dpulse(self, value):
+        ut.set_using_dict(self.setDigitalPulsing, value)
+
 
     """
     ---------------------------<<<Debug>>>---------------------------

python/src/detector.cpp

@@ -144,6 +144,10 @@ void init_det(py::module &m) {
              (void (Detector::*)(const std::string &, sls::Positions)) &
                  Detector::loadTrimbits,
              py::arg(), py::arg() = Positions{})
+        .def("saveTrimbits",
+             (void (Detector::*)(const std::string &, sls::Positions)) &
+                 Detector::saveTrimbits,
+             py::arg(), py::arg() = Positions{})
         .def("getAllTrimbits",
              (Result<int>(Detector::*)(sls::Positions) const) &
                  Detector::getAllTrimbits,
@@ -187,12 +191,12 @@ void init_det(py::module &m) {
              (void (Detector::*)(void (*)(double, int, void *), void *)) &
                  Detector::registerAcquisitionFinishedCallback,
              py::arg(), py::arg())
-        .def(
-            "registerDataCallback",
-            (void (Detector::*)(
-                void (*)(detectorData *, uint64_t, uint32_t, void *), void *)) &
-                Detector::registerDataCallback,
-            py::arg(), py::arg())
+        .def("registerDataCallback",
+             (void (Detector::*)(
+                 void (*)(sls::detectorData *, uint64_t, uint32_t, void *),
+                 void *)) &
+                 Detector::registerDataCallback,
+             py::arg(), py::arg())
         .def("getNumberOfFrames",
              (Result<int64_t>(Detector::*)(sls::Positions) const) &
                  Detector::getNumberOfFrames,
@@ -786,6 +790,15 @@ void init_det(py::module &m) {
         .def("setRxArping",
              (void (Detector::*)(bool, sls::Positions)) & Detector::setRxArping,
              py::arg(), py::arg() = Positions{})
+        .def("getIndividualRxROIs",
+             (Result<defs::ROI>(Detector::*)(sls::Positions) const) &
+                 Detector::getIndividualRxROIs,
+             py::arg())
+        .def("getRxROI", (defs::ROI(Detector::*)() const) & Detector::getRxROI)
+        .def("setRxROI",
+             (void (Detector::*)(const defs::ROI)) & Detector::setRxROI,
+             py::arg())
+        .def("clearRxROI", (void (Detector::*)()) & Detector::clearRxROI)
         .def("getFileFormat",
              (Result<defs::fileFormat>(Detector::*)(sls::Positions) const) &
                  Detector::getFileFormat,
@@ -1290,6 +1303,46 @@ void init_det(py::module &m) {
         .def("getGainCaps",
              (Result<int>(Detector::*)(sls::Positions)) & Detector::getGainCaps,
              py::arg() = Positions{})
+        .def("getPolarity",
+             (Result<defs::polarity>(Detector::*)(sls::Positions) const) &
+                 Detector::getPolarity,
+             py::arg() = Positions{})
+        .def("setPolarity",
+             (void (Detector::*)(defs::polarity, sls::Positions)) &
+                 Detector::setPolarity,
+             py::arg(), py::arg() = Positions{})
+        .def("getInterpolation",
+             (Result<bool>(Detector::*)(sls::Positions) const) &
+                 Detector::getInterpolation,
+             py::arg() = Positions{})
+        .def("setInterpolation",
+             (void (Detector::*)(bool, sls::Positions)) &
+                 Detector::setInterpolation,
+             py::arg(), py::arg() = Positions{})
+        .def("getPumpProbe",
+             (Result<bool>(Detector::*)(sls::Positions) const) &
+                 Detector::getPumpProbe,
+             py::arg() = Positions{})
+        .def("setPumpProbe",
+             (void (Detector::*)(bool, sls::Positions)) &
+                 Detector::setPumpProbe,
+             py::arg(), py::arg() = Positions{})
+        .def("getAnalogPulsing",
+             (Result<bool>(Detector::*)(sls::Positions) const) &
+                 Detector::getAnalogPulsing,
+             py::arg() = Positions{})
+        .def("setAnalogPulsing",
+             (void (Detector::*)(bool, sls::Positions)) &
+                 Detector::setAnalogPulsing,
+             py::arg(), py::arg() = Positions{})
+        .def("getDigitalPulsing",
+             (Result<bool>(Detector::*)(sls::Positions) const) &
+                 Detector::getDigitalPulsing,
+             py::arg() = Positions{})
+        .def("setDigitalPulsing",
+             (void (Detector::*)(bool, sls::Positions)) &
+                 Detector::setDigitalPulsing,
+             py::arg(), py::arg() = Positions{})
         .def("getNumberOfAnalogSamples",
              (Result<int>(Detector::*)(sls::Positions) const) &
                  Detector::getNumberOfAnalogSamples,
@@ -1551,11 +1604,6 @@ void init_det(py::module &m) {
         .def("resetFPGA",
              (void (Detector::*)(sls::Positions)) & Detector::resetFPGA,
              py::arg() = Positions{})
-        .def("copyDetectorServer",
-             (void (Detector::*)(const std::string &, const std::string &,
-                                 sls::Positions)) &
-                 Detector::copyDetectorServer,
-             py::arg(), py::arg(), py::arg() = Positions{})
         .def("updateDetectorServer",
              (void (Detector::*)(const std::string &, sls::Positions)) &
                  Detector::updateDetectorServer,
@@ -1567,11 +1615,6 @@ void init_det(py::module &m) {
         .def("rebootController",
              (void (Detector::*)(sls::Positions)) & Detector::rebootController,
              py::arg() = Positions{})
-        .def("updateFirmwareAndServer",
-             (void (Detector::*)(const std::string &, const std::string &,
-                                 const std::string &, sls::Positions)) &
-                 Detector::updateFirmwareAndServer,
-             py::arg(), py::arg(), py::arg(), py::arg() = Positions{})
         .def("updateFirmwareAndServer",
              (void (Detector::*)(const std::string &, const std::string &,
                                  sls::Positions)) &

python/src/enums.cpp

@@ -315,4 +315,9 @@ void init_enums(py::module &m) {
         .value("FIX_G2", slsDetectorDefs::gainMode::FIX_G2)
         .value("FIX_G0", slsDetectorDefs::gainMode::FIX_G0)
         .export_values();
+
+    py::enum_<slsDetectorDefs::polarity>(Defs, "polarity")
+        .value("POSITIVE", slsDetectorDefs::polarity::POSITIVE)
+        .value("NEGATIVE", slsDetectorDefs::polarity::NEGATIVE)
+        .export_values();
 }

slsDetectorCalibration/moenchExecutables/CMakeLists.txt

@@ -56,7 +56,8 @@ foreach(exe ${MOENCH_EXECUTABLES})
         ../dataStructures 
         ../interpolations
         ../../slsReceiverSoftware/include/
-	../../slsSupportLib/include/
+	    ../../slsSupportLib/include/
+        ${SLS_INTERNAL_RAPIDJSON_DIR}
     )
 
     target_link_libraries(${exe} 

slsDetectorGui/forms/form_detectormain.ui

@@ -235,6 +235,7 @@
     </property>
     <addaction name="actionLoadConfiguration"/>
     <addaction name="actionLoadTrimbits"/>
+    <addaction name="actionSaveTrimbits"/>
     <addaction name="actionLoadParameters"/>
    </widget>
    <widget class="QMenu" name="menuModes">
@@ -419,6 +420,11 @@ p, li { white-space: pre-wrap; }
     <string>&amp;About</string>
    </property>
   </action>
+  <action name="actionSaveTrimbits">
+   <property name="text">
+    <string>Save Trimbits</string>
+   </property>
+  </action>
  </widget>
  <resources>
   <include location="../include/icons.qrc"/>

slsDetectorGui/forms/form_plot.ui

@@ -20,7 +20,105 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout">
-   <item row="2" column="0" colspan="4">
+   <item row="1" column="5">
+    <widget class="QLabel" name="lblRxRoiEnabled">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>120</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>0</green>
+           <blue>255</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>0</red>
+           <green>0</green>
+           <blue>255</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Rx Roi Enabled</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
+   <item row="0" column="0" colspan="7">
+    <widget class="QGroupBox" name="boxPlot">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="font">
+      <font>
+       <family>Sans Serif</family>
+       <pointsize>10</pointsize>
+      </font>
+     </property>
+     <property name="title">
+      <string>Sample Plot</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+     <property name="flat">
+      <bool>true</bool>
+     </property>
+     <layout class="QGridLayout" name="plotLayout">
+      <property name="margin">
+       <number>9</number>
+      </property>
+      <property name="spacing">
+       <number>0</number>
+      </property>
+     </layout>
+    </widget>
+   </item>
+   <item row="2" column="0" colspan="7">
     <widget class="QWidget" name="widgetStatistics" native="true">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
@@ -212,104 +310,6 @@
      </property>
     </spacer>
    </item>
-   <item row="0" column="0" colspan="4">
-    <widget class="QGroupBox" name="boxPlot">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="font">
-      <font>
-       <family>Sans Serif</family>
-       <pointsize>10</pointsize>
-      </font>
-     </property>
-     <property name="title">
-      <string>Sample Plot</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-     <property name="flat">
-      <bool>true</bool>
-     </property>
-     <layout class="QGridLayout" name="plotLayout">
-      <property name="margin">
-       <number>9</number>
-      </property>
-      <property name="spacing">
-       <number>0</number>
-      </property>
-     </layout>
-    </widget>
-   </item>
-   <item row="1" column="2">
-    <widget class="QLabel" name="lblInCompleteImage">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>40</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>16777215</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="palette">
-      <palette>
-       <active>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>255</red>
-           <green>0</green>
-           <blue>0</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </active>
-       <inactive>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>255</red>
-           <green>0</green>
-           <blue>0</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </inactive>
-       <disabled>
-        <colorrole role="WindowText">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>139</red>
-           <green>142</green>
-           <blue>142</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </disabled>
-      </palette>
-     </property>
-     <property name="text">
-      <string>Missing Packets</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignCenter</set>
-     </property>
-    </widget>
-   </item>
    <item row="1" column="1">
     <widget class="QLabel" name="lblCompleteImage">
      <property name="sizePolicy">
@@ -320,7 +320,7 @@
      </property>
      <property name="minimumSize">
       <size>
-       <width>40</width>
+       <width>120</width>
        <height>0</height>
       </size>
      </property>
@@ -375,6 +375,71 @@
      </property>
     </widget>
    </item>
+   <item row="1" column="2">
+    <widget class="QLabel" name="lblInCompleteImage">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>255</red>
+           <green>0</green>
+           <blue>0</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>255</red>
+           <green>0</green>
+           <blue>0</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="WindowText">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>139</red>
+           <green>142</green>
+           <blue>142</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="text">
+      <string>Missing Packets</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignCenter</set>
+     </property>
+    </widget>
+   </item>
   </layout>
  </widget>
  <resources/>

slsDetectorGui/forms/form_tab_developer.ui

@@ -32,17 +32,29 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout">
-   <item row="0" column="0">
-    <widget class="QLabel" name="lblReadout">
+   <item row="1" column="0" colspan="3">
+    <widget class="QTabWidget" name="tabWidget">
      <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
+      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
+       <horstretch>5</horstretch>
        <verstretch>0</verstretch>
       </sizepolicy>
      </property>
-     <property name="text">
-      <string>Readout: </string>
+     <property name="currentIndex">
+      <number>1</number>
      </property>
+     <widget class="QWidget" name="tabDAC">
+      <attribute name="title">
+       <string>DACs</string>
+      </attribute>
+      <layout class="QGridLayout" name="gridlayoutDac"/>
+     </widget>
+     <widget class="QWidget" name="tabADC">
+      <attribute name="title">
+       <string>ADCs</string>
+      </attribute>
+      <layout class="QGridLayout" name="gridlayoutAdc"/>
+     </widget>
     </widget>
    </item>
    <item row="0" column="1">
@@ -77,145 +89,19 @@
      </property>
     </spacer>
    </item>
-   <item row="1" column="0">
-    <widget class="QLabel" name="lblComboHV">
+   <item row="0" column="0">
+    <widget class="QLabel" name="lblReadout">
      <property name="sizePolicy">
       <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
        <horstretch>0</horstretch>
        <verstretch>0</verstretch>
       </sizepolicy>
      </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
      <property name="text">
-      <string>High Voltage: </string>
+      <string>Readout: </string>
      </property>
     </widget>
    </item>
-   <item row="1" column="1">
-    <widget class="QComboBox" name="comboHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>0</width>
-       <height>28</height>
-      </size>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <item>
-      <property name="text">
-       <string>0</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>90</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>110</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>120</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>150</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>180</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>200</string>
-      </property>
-     </item>
-    </widget>
-   </item>
-   <item row="2" column="0">
-    <widget class="QLabel" name="lblSpinHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="text">
-      <string>High Voltage: </string>
-     </property>
-    </widget>
-   </item>
-   <item row="2" column="1">
-    <widget class="QSpinBox" name="spinHV">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
-       <horstretch>0</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>0</width>
-       <height>28</height>
-      </size>
-     </property>
-     <property name="toolTip">
-      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="minimum">
-      <number>-1</number>
-     </property>
-     <property name="maximum">
-      <number>200</number>
-     </property>
-    </widget>
-   </item>
-   <item row="3" column="0" colspan="3">
-    <widget class="QTabWidget" name="tabWidget">
-     <property name="sizePolicy">
-      <sizepolicy hsizetype="Expanding" vsizetype="Expanding">
-       <horstretch>5</horstretch>
-       <verstretch>0</verstretch>
-      </sizepolicy>
-     </property>
-     <property name="currentIndex">
-      <number>1</number>
-     </property>
-     <widget class="QWidget" name="tabDAC">
-      <attribute name="title">
-       <string>DACs</string>
-      </attribute>
-      <layout class="QGridLayout" name="gridlayoutDac"/>
-     </widget>
-     <widget class="QWidget" name="tabADC">
-      <attribute name="title">
-       <string>ADCs</string>
-      </attribute>
-      <layout class="QGridLayout" name="gridlayoutAdc"/>
-     </widget>
-    </widget>
-   </item>
   </layout>
  </widget>
  <resources>

slsDetectorGui/forms/form_tab_settings.ui

@@ -7,7 +7,7 @@
     <x>0</x>
     <y>0</y>
     <width>775</width>
-    <height>380</height>
+    <height>400</height>
    </rect>
   </property>
   <property name="sizePolicy">
@@ -32,314 +32,77 @@
    <string>Form</string>
   </property>
   <layout class="QGridLayout" name="gridLayout_2">
-   <item row="4" column="3">
-    <widget class="QCheckBox" name="chkCounter2">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>50</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>2</string>
-     </property>
-     <property name="checked">
-      <bool>true</bool>
-     </property>
-    </widget>
-   </item>
-   <item row="4" column="4">
-    <widget class="QCheckBox" name="chkCounter3">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>50</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>3</string>
-     </property>
-     <property name="checked">
-      <bool>true</bool>
-     </property>
-    </widget>
-   </item>
-   <item row="3" column="2" colspan="3">
-    <widget class="QComboBox" name="comboDynamicRange">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <item>
-      <property name="text">
-       <string>1.67772e+07</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>65535</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>4095</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>255</string>
-      </property>
-     </item>
-     <item>
-      <property name="text">
-       <string>7</string>
-      </property>
-     </item>
-    </widget>
-   </item>
-   <item row="2" column="2" colspan="3">
-    <widget class="QSpinBox" name="spinThreshold">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="2" column="6">
-    <widget class="QSpinBox" name="spinThreshold3">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>140</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
-     </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
-     </property>
-    </widget>
-   </item>
-   <item row="3" column="0">
-    <widget class="QLabel" name="lblDynamicRange">
-     <property name="enabled">
-      <bool>false</bool>
-     </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
-     </property>
-     <property name="text">
-      <string>Dynamic Range:</string>
-     </property>
-    </widget>
-   </item>
-   <item row="5" column="2">
-    <spacer name="verticalSpacer">
-     <property name="orientation">
-      <enum>Qt::Vertical</enum>
-     </property>
-     <property name="sizeType">
-      <enum>QSizePolicy::Fixed</enum>
-     </property>
-     <property name="sizeHint" stdset="0">
-      <size>
-       <width>20</width>
-       <height>190</height>
-      </size>
-     </property>
-    </spacer>
-   </item>
-   <item row="2" column="8">
-    <widget class="QPushButton" name="btnSetThreshold">
-     <property name="enabled">
-      <bool>true</bool>
-     </property>
+   <item row="0" column="2" colspan="5">
+    <widget class="QComboBox" name="comboHV">
      <property name="sizePolicy">
-      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
        <horstretch>0</horstretch>
        <verstretch>0</verstretch>
       </sizepolicy>
      </property>
      <property name="minimumSize">
       <size>
-       <width>100</width>
-       <height>30</height>
+       <width>140</width>
+       <height>28</height>
       </size>
      </property>
-     <property name="maximumSize">
-      <size>
-       <width>16777215</width>
-       <height>30</height>
-      </size>
-     </property>
-     <property name="palette">
-      <palette>
-       <active>
-        <colorrole role="Shadow">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>20</red>
-           <green>20</green>
-           <blue>20</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </active>
-       <inactive>
-        <colorrole role="Shadow">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>20</red>
-           <green>20</green>
-           <blue>20</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </inactive>
-       <disabled>
-        <colorrole role="Shadow">
-         <brush brushstyle="SolidPattern">
-          <color alpha="255">
-           <red>20</red>
-           <green>20</green>
-           <blue>20</blue>
-          </color>
-         </brush>
-        </colorrole>
-       </disabled>
-      </palette>
-     </property>
-     <property name="focusPolicy">
-      <enum>Qt::TabFocus</enum>
-     </property>
-     <property name="text">
-      <string>Set</string>
-     </property>
-     <property name="icon">
-      <iconset resource="../include/icons.qrc">
-       <normaloff>:/icons/images/rightArrow.png</normaloff>:/icons/images/rightArrow.png</iconset>
-     </property>
-     <property name="flat">
-      <bool>false</bool>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
+     <item>
+      <property name="text">
+       <string>0</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>90</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>110</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>120</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>150</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>180</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>200</string>
+      </property>
+     </item>
     </widget>
    </item>
    <item row="0" column="0">
-    <widget class="QLabel" name="lblSettings">
-     <property name="enabled">
-      <bool>true</bool>
+    <widget class="QLabel" name="lblComboHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
      </property>
-     <property name="minimumSize">
-      <size>
-       <width>110</width>
-       <height>0</height>
-      </size>
-     </property>
-     <property name="maximumSize">
-      <size>
-       <width>110</width>
-       <height>16777215</height>
-      </size>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage&lt;/p&gt;&lt;p&gt; #highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
      </property>
      <property name="text">
-      <string>Settings:</string>
+      <string>High Voltage: </string>
      </property>
     </widget>
    </item>
-   <item row="0" column="1">
-    <spacer name="horizontalSpacer">
-     <property name="orientation">
-      <enum>Qt::Horizontal</enum>
-     </property>
-     <property name="sizeType">
-      <enum>QSizePolicy::Fixed</enum>
-     </property>
-     <property name="sizeHint" stdset="0">
-      <size>
-       <width>20</width>
-       <height>20</height>
-      </size>
-     </property>
-    </spacer>
-   </item>
-   <item row="2" column="0">
+   <item row="4" column="0">
     <widget class="QLabel" name="lblThreshold">
      <property name="enabled">
       <bool>false</bool>
@@ -361,44 +124,26 @@
      </property>
     </widget>
    </item>
-   <item row="2" column="5">
-    <widget class="QSpinBox" name="spinThreshold2">
+   <item row="6" column="4">
+    <widget class="QCheckBox" name="chkCounter3">
      <property name="enabled">
       <bool>false</bool>
      </property>
-     <property name="minimumSize">
-      <size>
-       <width>140</width>
-       <height>25</height>
-      </size>
-     </property>
      <property name="maximumSize">
       <size>
-       <width>140</width>
+       <width>50</width>
        <height>16777215</height>
       </size>
      </property>
-     <property name="keyboardTracking">
-      <bool>false</bool>
+     <property name="text">
+      <string>3</string>
      </property>
-     <property name="suffix">
-      <string> eV</string>
-     </property>
-     <property name="minimum">
-      <number>-100000</number>
-     </property>
-     <property name="maximum">
-      <number>100000</number>
-     </property>
-     <property name="singleStep">
-      <number>100</number>
-     </property>
-     <property name="value">
-      <number>-1</number>
+     <property name="checked">
+      <bool>true</bool>
      </property>
     </widget>
    </item>
-   <item row="2" column="9">
+   <item row="4" column="14">
     <spacer name="horizontalSpacer_2">
      <property name="orientation">
       <enum>Qt::Horizontal</enum>
@@ -414,10 +159,10 @@
      </property>
     </spacer>
    </item>
-   <item row="4" column="0">
-    <widget class="QLabel" name="lblCounter">
+   <item row="2" column="0">
+    <widget class="QLabel" name="lblSettings">
      <property name="enabled">
-      <bool>false</bool>
+      <bool>true</bool>
      </property>
      <property name="minimumSize">
       <size>
@@ -432,11 +177,11 @@
       </size>
      </property>
      <property name="text">
-      <string>Counters:</string>
+      <string>Settings:</string>
      </property>
     </widget>
    </item>
-   <item row="4" column="2">
+   <item row="6" column="2">
     <widget class="QCheckBox" name="chkCounter1">
      <property name="enabled">
       <bool>false</bool>
@@ -455,7 +200,7 @@
      </property>
     </widget>
    </item>
-   <item row="0" column="2" colspan="3">
+   <item row="2" column="2" colspan="9">
     <widget class="QComboBox" name="comboSettings">
      <property name="enabled">
       <bool>true</bool>
@@ -469,7 +214,7 @@
      <property name="minimumSize">
       <size>
        <width>140</width>
-       <height>25</height>
+       <height>28</height>
       </size>
      </property>
      <property name="maximumSize">
@@ -594,7 +339,269 @@
      </item>
     </widget>
    </item>
-   <item row="1" column="0">
+   <item row="4" column="11">
+    <widget class="QSpinBox" name="spinThreshold2">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="4" column="13">
+    <widget class="QPushButton" name="btnSetThreshold">
+     <property name="enabled">
+      <bool>true</bool>
+     </property>
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>100</width>
+       <height>30</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>16777215</width>
+       <height>30</height>
+      </size>
+     </property>
+     <property name="palette">
+      <palette>
+       <active>
+        <colorrole role="Shadow">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>20</red>
+           <green>20</green>
+           <blue>20</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </active>
+       <inactive>
+        <colorrole role="Shadow">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>20</red>
+           <green>20</green>
+           <blue>20</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </inactive>
+       <disabled>
+        <colorrole role="Shadow">
+         <brush brushstyle="SolidPattern">
+          <color alpha="255">
+           <red>20</red>
+           <green>20</green>
+           <blue>20</blue>
+          </color>
+         </brush>
+        </colorrole>
+       </disabled>
+      </palette>
+     </property>
+     <property name="focusPolicy">
+      <enum>Qt::TabFocus</enum>
+     </property>
+     <property name="text">
+      <string>Set</string>
+     </property>
+     <property name="icon">
+      <iconset resource="../include/icons.qrc">
+       <normaloff>:/icons/images/rightArrow.png</normaloff>:/icons/images/rightArrow.png</iconset>
+     </property>
+     <property name="flat">
+      <bool>false</bool>
+     </property>
+    </widget>
+   </item>
+   <item row="2" column="1">
+    <spacer name="horizontalSpacer">
+     <property name="orientation">
+      <enum>Qt::Horizontal</enum>
+     </property>
+     <property name="sizeType">
+      <enum>QSizePolicy::Fixed</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>20</width>
+       <height>20</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="4" column="12">
+    <widget class="QSpinBox" name="spinThreshold3">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="7" column="2">
+    <spacer name="verticalSpacer">
+     <property name="orientation">
+      <enum>Qt::Vertical</enum>
+     </property>
+     <property name="sizeType">
+      <enum>QSizePolicy::Fixed</enum>
+     </property>
+     <property name="sizeHint" stdset="0">
+      <size>
+       <width>20</width>
+       <height>190</height>
+      </size>
+     </property>
+    </spacer>
+   </item>
+   <item row="4" column="2" colspan="9">
+    <widget class="QSpinBox" name="spinThreshold">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>25</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="suffix">
+      <string> eV</string>
+     </property>
+     <property name="minimum">
+      <number>-100000</number>
+     </property>
+     <property name="maximum">
+      <number>100000</number>
+     </property>
+     <property name="singleStep">
+      <number>100</number>
+     </property>
+     <property name="value">
+      <number>-1</number>
+     </property>
+    </widget>
+   </item>
+   <item row="6" column="0">
+    <widget class="QLabel" name="lblCounter">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="text">
+      <string>Counters:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="5" column="0">
+    <widget class="QLabel" name="lblDynamicRange">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>110</width>
+       <height>0</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>110</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="text">
+      <string>Dynamic Range:</string>
+     </property>
+    </widget>
+   </item>
+   <item row="3" column="0">
     <widget class="QLabel" name="lblGainMode">
      <property name="enabled">
       <bool>false</bool>
@@ -616,7 +623,70 @@
      </property>
     </widget>
    </item>
-   <item row="1" column="2">
+   <item row="5" column="2" colspan="9">
+    <widget class="QComboBox" name="comboDynamicRange">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>28</height>
+      </size>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>140</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <item>
+      <property name="text">
+       <string>1.67772e+07</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>65535</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>4095</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>255</string>
+      </property>
+     </item>
+     <item>
+      <property name="text">
+       <string>7</string>
+      </property>
+     </item>
+    </widget>
+   </item>
+   <item row="6" column="3">
+    <widget class="QCheckBox" name="chkCounter2">
+     <property name="enabled">
+      <bool>false</bool>
+     </property>
+     <property name="maximumSize">
+      <size>
+       <width>50</width>
+       <height>16777215</height>
+      </size>
+     </property>
+     <property name="text">
+      <string>2</string>
+     </property>
+     <property name="checked">
+      <bool>true</bool>
+     </property>
+    </widget>
+   </item>
+   <item row="3" column="2" colspan="9">
     <widget class="QComboBox" name="comboGainMode">
      <property name="enabled">
       <bool>false</bool>
@@ -630,7 +700,7 @@
      <property name="minimumSize">
       <size>
        <width>140</width>
-       <height>25</height>
+       <height>28</height>
       </size>
      </property>
      <property name="maximumSize">
@@ -674,6 +744,50 @@
      </item>
     </widget>
    </item>
+   <item row="1" column="0">
+    <widget class="QLabel" name="lblSpinHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="text">
+      <string>High Voltage: </string>
+     </property>
+    </widget>
+   </item>
+   <item row="1" column="2" colspan="5">
+    <widget class="QSpinBox" name="spinHV">
+     <property name="sizePolicy">
+      <sizepolicy hsizetype="Expanding" vsizetype="Fixed">
+       <horstretch>0</horstretch>
+       <verstretch>0</verstretch>
+      </sizepolicy>
+     </property>
+     <property name="minimumSize">
+      <size>
+       <width>140</width>
+       <height>28</height>
+      </size>
+     </property>
+     <property name="toolTip">
+      <string>&lt;html&gt;&lt;head/&gt;&lt;body&gt;&lt;p&gt;High Voltage. Range: 60 - 200V. Swich off high voltage by setting to 0.&lt;/p&gt;&lt;p&gt;-1 corresponds to different values from detectors.&lt;/p&gt;&lt;p&gt;#highvoltage#&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
+     </property>
+     <property name="keyboardTracking">
+      <bool>false</bool>
+     </property>
+     <property name="minimum">
+      <number>-1</number>
+     </property>
+     <property name="maximum">
+      <number>200</number>
+     </property>
+    </widget>
+   </item>
   </layout>
  </widget>
  <tabstops>

slsDetectorGui/include/qCloneWidget.h

@@ -5,6 +5,8 @@
 #include <QMainWindow>
 #include <QString>
 
+namespace sls {
+
 class SlsQtH1D;
 class SlsQt1DPlot;
 class SlsQt2DPlot;
@@ -43,3 +45,5 @@ class qCloneWidget : public QMainWindow, private Ui::ClonePlotObject {
 
     static int NumClones;
 };
+
+} // namespace sls

slsDetectorGui/include/qDacWidget.h

@@ -6,11 +6,13 @@
 #include "ui_form_dac.h"
 #include <string>
 
+namespace sls {
+
 class qDacWidget : public QWidget, private Ui::WidgetDacObject {
     Q_OBJECT
 
   public:
-    qDacWidget(QWidget *parent, sls::Detector *detector, bool d, std::string n,
+    qDacWidget(QWidget *parent, Detector *detector, bool d, std::string n,
                slsDetectorDefs::dacIndex i);
     ~qDacWidget();
     void SetDetectorIndex(int id);
@@ -25,8 +27,10 @@ class qDacWidget : public QWidget, private Ui::WidgetDacObject {
     void GetAdc();
     void Refresh();
 
-    sls::Detector *det;
+    Detector *det;
     bool isDac{true};
     slsDetectorDefs::dacIndex index;
     int detectorIndex{-1};
 };
+
+} // namespace sls

slsDetectorGui/include/qDefs.h

@@ -14,6 +14,8 @@
 #include <ostream>
 #include <string>
 
+namespace sls {
+
 using std::chrono::duration;
 using std::chrono::duration_cast;
 using std::chrono::hours;
@@ -47,9 +49,9 @@ class qDefs : public QWidget {
     static void DisplayExceptions(std::string emsg, std::string src) {
         try {
             throw;
-        } catch (const sls::SocketError &e) {
+        } catch (const SocketError &e) {
             throw;
-        } catch (const sls::SharedMemoryError &e) {
+        } catch (const SharedMemoryError &e) {
             throw;
         } catch (const std::exception &e) {
             ExceptionMessage(emsg, e.what(), src);
@@ -63,9 +65,9 @@ class qDefs : public QWidget {
                                  typename NonDeduced<CT>::type... Args) {
         try {
             throw;
-        } catch (const sls::SocketError &e) {
+        } catch (const SocketError &e) {
             throw;
-        } catch (const sls::SharedMemoryError &e) {
+        } catch (const SharedMemoryError &e) {
             throw;
         } catch (const std::exception &e) {
             ExceptionMessage(emsg, e.what(), src);
@@ -329,3 +331,5 @@ class qDefs : public QWidget {
                        source);
     }
 };
+
+} // namespace sls

slsDetectorGui/include/qDetectorMain.h

@@ -6,6 +6,11 @@
 #include "ui_form_detectormain.h"
 #include <QTabWidget>
 
+class QScrollArea;
+class QResizeEvent;
+
+namespace sls {
+
 class qDrawPlot;
 class qTabMeasurement;
 class qTabDataOutput;
@@ -15,8 +20,6 @@ class qTabSettings;
 class qTabDebugging;
 class qTabDeveloper;
 class qTabMessages;
-class QScrollArea;
-class QResizeEvent;
 
 /** To Over-ride the QTabWidget class to get the tabBar protected
  * methodTabWidget */
@@ -70,7 +73,7 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
         NumberOfTabs
     };
     slsDetectorDefs::detectorType detType;
-    std::unique_ptr<sls::Detector> det;
+    std::unique_ptr<Detector> det;
     qDrawPlot *plot;
     MyTabWidget *tabs;
     QScrollArea *scroll[NumberOfTabs];
@@ -88,3 +91,5 @@ class qDetectorMain : public QMainWindow, private Ui::DetectorMainObject {
     QString zoomToolTip;
     QColor defaultTabColor;
 };
+
+} // namespace sls

slsDetectorGui/include/qDrawPlot.h

@@ -6,18 +6,21 @@
 #include "ui_form_plot.h"
 #include <mutex>
 
+class QResizeEvent;
+
+namespace sls {
+
 class SlsQt1DPlot;
 class SlsQtH1D;
 class SlsQt2DPlot;
 class qCloneWidget;
 class detectorData;
-class QResizeEvent;
 
 class qDrawPlot : public QWidget, private Ui::PlotObject {
     Q_OBJECT
 
   public:
-    qDrawPlot(QWidget *parent, sls::Detector *detector);
+    qDrawPlot(QWidget *parent, Detector *detector);
     ~qDrawPlot();
     bool GetIsRunning();
     void SetRunning(bool enable);
@@ -55,6 +58,7 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     void EnableGainPlot(bool enable);
     void ClonePlot();
     void SavePlot();
+    void SetGapPixels(bool enable);
 
   protected:
     void resizeEvent(QResizeEvent *event);
@@ -95,7 +99,7 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
 
     static const int NUM_PEDESTAL_FRAMES = 20;
     static const int NUM_GOTTHARD25_CHANS = 1280;
-    sls::Detector *det;
+    Detector *det;
     slsDetectorDefs::detectorType detType;
 
     SlsQt1DPlot *plot1d{nullptr};
@@ -160,6 +164,9 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     int64_t currentFrame{0};
     mutable std::mutex mPlots;
     int64_t currentAcqIndex{0};
+    slsDetectorDefs::ROI rxRoi{};
+    bool isRxRoiDisplayed{false};
+    bool isGapPixels{false};
 
     unsigned int nPixelsX{0};
     unsigned int nPixelsY{0};
@@ -168,3 +175,5 @@ class qDrawPlot : public QWidget, private Ui::PlotObject {
     int gainOffset{0};
     bool gotthard25;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabAdvanced.h

@@ -4,13 +4,15 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_advanced.h"
 
+namespace sls {
+
 class qDrawPlot;
 
 class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     Q_OBJECT
 
   public:
-    qTabAdvanced(QWidget *parent, sls::Detector *detector, qDrawPlot *p);
+    qTabAdvanced(QWidget *parent, Detector *detector, qDrawPlot *p);
     ~qTabAdvanced();
 
   public slots:
@@ -74,6 +76,8 @@ class qTabAdvanced : public QWidget, private Ui::TabAdvancedObject {
     void GetExposureTime();
     void GetGateDelay();
 
-    sls::Detector *det;
+    Detector *det;
     qDrawPlot *plot;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabDataOutput.h

@@ -4,11 +4,13 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_dataoutput.h"
 
+namespace sls {
+
 class qTabDataOutput : public QWidget, private Ui::TabDataOutputObject {
     Q_OBJECT
 
   public:
-    qTabDataOutput(QWidget *parent, sls::Detector *detector);
+    qTabDataOutput(QWidget *parent, Detector *detector);
     ~qTabDataOutput();
     void Refresh();
 
@@ -39,7 +41,9 @@ class qTabDataOutput : public QWidget, private Ui::TabDataOutputObject {
     void GetSpeed();
     void GetParallel();
 
-    sls::Detector *det;
+    Detector *det;
     // Button group for radiobuttons for rate
     QButtonGroup *btnGroupRate;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabDebugging.h

@@ -7,11 +7,13 @@
 class QTreeWidget;
 class QTreeWidgetItem;
 
+namespace sls {
+
 class qTabDebugging : public QWidget, private Ui::TabDebuggingObject {
     Q_OBJECT
 
   public:
-    qTabDebugging(QWidget *parent, sls::Detector *detector);
+    qTabDebugging(QWidget *parent, Detector *detector);
     ~qTabDebugging();
     void Refresh();
 
@@ -26,10 +28,12 @@ class qTabDebugging : public QWidget, private Ui::TabDebuggingObject {
     void Initialization();
     void PopulateDetectors();
 
-    sls::Detector *det;
+    Detector *det;
     /** Tree Widget displaying the detectors, modules */
     QTreeWidget *treeDet;
     QLabel *lblDetectorHostname;
     QLabel *lblDetectorFirmware;
     QLabel *lblDetectorSoftware;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabDeveloper.h

@@ -6,35 +6,30 @@
 #include "ui_form_tab_developer.h"
 #include <vector>
 
+namespace sls {
+
 class qDacWidget;
 
 class qTabDeveloper : public QWidget, private Ui::TabDeveloperObject {
     Q_OBJECT
 
   public:
-    qTabDeveloper(QWidget *parent, sls::Detector *detector);
+    qTabDeveloper(QWidget *parent, Detector *detector);
     ~qTabDeveloper();
 
   public slots:
     void Refresh();
 
-  private slots:
-    void SetHighVoltage();
-
   private:
     void SetupWidgetWindow();
     void Initialization();
     void PopulateDetectors();
-    void GetHighVoltage();
     slsDetectorDefs::dacIndex getSLSIndex(slsDetectorDefs::detectorType detType,
                                           int index);
 
-    sls::Detector *det;
+    Detector *det;
     std::vector<qDacWidget *> dacWidgets;
     std::vector<qDacWidget *> adcWidgets;
-
-    enum hvVals { HV_0, HV_90, HV_110, HV_120, HV_150, HV_180, HV_200 };
-    int hvmin;
-    static const int HV_MIN = 60;
-    static const int HV_MAX = 200;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabMeasurement.h

@@ -4,14 +4,17 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_measurement.h"
 
-class qDrawPlot;
 class QStandardItemModel;
 
+namespace sls {
+
+class qDrawPlot;
+
 class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     Q_OBJECT
 
   public:
-    qTabMeasurement(QWidget *parent, sls::Detector *detector, qDrawPlot *p);
+    qTabMeasurement(QWidget *parent, Detector *detector, qDrawPlot *p);
     ~qTabMeasurement();
 
     void Refresh();
@@ -81,7 +84,7 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     void FileNameChangedSignal(QString);
 
   private:
-    sls::Detector *det;
+    Detector *det;
     qDrawPlot *plot;
     // enum for the timing mode
     enum { AUTO, TRIGGER, GATED, BURST_TRIGGER, TRIGGER_GATED, NUMTIMINGMODES };
@@ -98,3 +101,5 @@ class qTabMeasurement : public QWidget, private Ui::TabMeasurementObject {
     int numMeasurements{1};
     int currentMeasurement{0};
 };
+
+} // namespace sls

slsDetectorGui/include/qTabMessages.h

@@ -6,6 +6,8 @@
 class QProcess;
 class QKeyEvent;
 
+namespace sls {
+
 class qTabMessages : public QWidget, private Ui::TabMessagesObject {
     Q_OBJECT
 
@@ -34,3 +36,5 @@ class qTabMessages : public QWidget, private Ui::TabMessagesObject {
     QProcess *process;
     QStringList lastCommand;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabPlot.h

@@ -4,13 +4,15 @@
 #include "sls/Detector.h"
 #include "ui_form_tab_plot.h"
 
+namespace sls {
+
 class qDrawPlot;
 
 class qTabPlot : public QWidget, private Ui::TabPlotObject {
     Q_OBJECT
 
   public:
-    qTabPlot(QWidget *parent, sls::Detector *detector, qDrawPlot *p);
+    qTabPlot(QWidget *parent, Detector *detector, qDrawPlot *p);
     ~qTabPlot();
     void SetScanArgument();
     void Refresh();
@@ -53,7 +55,7 @@ class qTabPlot : public QWidget, private Ui::TabPlotObject {
     void SetXYRange();
     void MaintainAspectRatio(int dimension);
 
-    sls::Detector *det;
+    Detector *det;
     qDrawPlot *plot;
     bool is1d;
 
@@ -65,3 +67,5 @@ class qTabPlot : public QWidget, private Ui::TabPlotObject {
     static QString defaultImageYAxisTitle;
     static QString defaultImageZAxisTitle;
 };
+
+} // namespace sls

slsDetectorGui/include/qTabSettings.h

@@ -5,17 +5,20 @@
 #include "ui_form_tab_settings.h"
 #include <QCheckBox>
 
+namespace sls {
+
 class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     Q_OBJECT
 
   public:
-    qTabSettings(QWidget *parent, sls::Detector *detector);
+    qTabSettings(QWidget *parent, Detector *detector);
     ~qTabSettings();
     void Refresh();
   public slots:
     void SetExportMode(bool exportMode);
 
   private slots:
+    void SetHighVoltage();
     void SetSettings(int index);
     void SetGainMode(int index);
     void SetDynamicRange(int index);
@@ -30,6 +33,7 @@ class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     void ShowFixG0(bool expertMode);
     void Initialization();
 
+    void GetHighVoltage();
     void GetSettings();
     void GetGainMode();
     void GetDynamicRange();
@@ -37,9 +41,15 @@ class qTabSettings : public QWidget, private Ui::TabSettingsObject {
     void GetThresholdEnergies();
     void GetCounterMask();
 
-    sls::Detector *det;
+    Detector *det;
     std::vector<QCheckBox *> counters;
 
+    enum hvVals { HV_0, HV_90, HV_110, HV_120, HV_150, HV_180, HV_200 };
+
+    int hvmin;
+    static const int HV_MIN = 60;
+    static const int HV_MAX = 200;
+
     enum {
         STANDARD,
         FAST,
@@ -77,3 +87,5 @@ class qTabSettings : public QWidget, private Ui::TabSettingsObject {
         DYNAMICRANGE_4
     };
 };
+
+} // namespace sls

slsDetectorGui/slsDetectorPlotting/include/SlsQt1DPlot.h

@@ -9,11 +9,15 @@
 #include <qwt_plot_curve.h>
 #include <qwt_plot_marker.h>
 #include <qwt_scale_div.h>
+#include <qwt_plot_shapeitem.h>
 
 class QPen;
-class SlsQt1DPlot;
 class QwtSymbol;
 
+namespace sls {
+
+class SlsQt1DPlot;
+
 class SlsQtH1D : public QwtPlotCurve {
 
   public:
@@ -136,6 +140,9 @@ class SlsQt1DPlot : public QwtPlot {
     void SetLogX(bool yes = 1);
     void SetLogY(bool yes = 1);
 
+    void EnableRoiBox(std::array<int, 4> roi);  
+    void DisableRoiBox();
+
   private:
     SlsQtH1DList *hist_list{nullptr};
     SlsQt1DZoomer *zoomer{nullptr};
@@ -159,9 +166,15 @@ class SlsQt1DPlot : public QwtPlot {
     friend void SlsQtH1D::Attach(SlsQt1DPlot *p);
     friend void SlsQtH1D::Detach(SlsQt1DPlot *p);
 
+    QwtPlotShapeItem *roiBox{nullptr};
+
   public slots:
     void UnZoom();
     void Update();
 };
 
+} // namespace sls
+
 #endif
+
+

slsDetectorGui/slsDetectorPlotting/include/SlsQt1DZoomer.h

@@ -8,6 +8,8 @@
 #include <qwt_plot_panner.h>
 #include <qwt_plot_zoomer.h>
 
+namespace sls {
+
 class SlsQtH1D;
 
 class SlsQt1DZoomer : public QwtPlotZoomer {
@@ -51,4 +53,6 @@ class SlsQt1DZoomer : public QwtPlotZoomer {
     }
 };
 
+} // namespace sls
+
 #endif

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DHist.h

@@ -9,6 +9,8 @@
 #include <qwt_scale_draw.h>
 #include <qwt_scale_widget.h>
 
+namespace sls {
+
 class SlsQt2DHist : public QwtRasterData {
 
   private:
@@ -125,4 +127,6 @@ class SlsQt2DHist : public QwtRasterData {
     }
 };
 
+} // namespace sls
+
 #endif

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DPlot.h

@@ -6,11 +6,14 @@
 #include <qlist.h>
 #include <qwt_plot.h>
 #include <qwt_plot_spectrogram.h>
+#include <qwt_plot_shapeitem.h>
 
 class QwtPlotPanner;
 class QwtScaleWidget;
 class QwtLinearColorMap;
 
+namespace sls {
+
 class SlsQt2DPlot : public QwtPlot {
     Q_OBJECT
 
@@ -67,6 +70,8 @@ class SlsQt2DPlot : public QwtPlot {
     void SetLogz(bool enable, bool isMin, bool isMax, double min, double max);
     void SetZRange(bool isMin, bool isMax, double min, double max);
     void LogZ(bool on = 1);
+    void EnableRoiBox(std::array<int, 4> roi);  
+    void DisableRoiBox();
 
   public slots:
     void showSpectrogram(bool on);
@@ -86,4 +91,7 @@ class SlsQt2DPlot : public QwtPlot {
     QList<double> contourLevelsLog;
     bool disableZoom{false};
     int isLog;
+    QwtPlotShapeItem *roiBox{nullptr};
 };
+
+} // namespace sls

slsDetectorGui/slsDetectorPlotting/include/SlsQt2DZoomer.h

@@ -7,6 +7,8 @@
 #include <qwt_plot_panner.h>
 #include <qwt_plot_zoomer.h>
 
+namespace sls {
+
 class SlsQt2DZoomer : public QwtPlotZoomer {
   private:
     SlsQt2DHist *hist;
@@ -40,4 +42,6 @@ class SlsQt2DZoomer : public QwtPlotZoomer {
     }
 };
 
+} // namespace sls
+
 #endif

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DPlot.cpp

@@ -15,6 +15,8 @@
 #include <qwt_symbol.h>
 #include <stdlib.h>
 
+namespace sls {
+
 #define QwtLog10ScaleEngine QwtLogScaleEngine // hmm
 
 SlsQtH1D::SlsQtH1D(QString title, int n, double min, double max, double *data)
@@ -442,6 +444,28 @@ void SlsQt1DPlot::SetLog(int axisId, bool yes) {
     Update();
 }
 
+
+void SlsQt1DPlot::EnableRoiBox(std::array<int, 4> roi) {
+    if (roiBox == nullptr) {
+        roiBox = new QwtPlotShapeItem();
+        roiBox->attach(this);
+        roiBox->setPen(QColor(Qt::yellow), 2.0, Qt::SolidLine);
+    } 
+
+    // TopLeft - BottomRight (max points are +1 on graph)
+    QRect myRect(QPoint(roi[0], roi[2]), QPoint(roi[1] - 1, roi[3] - 1));
+    roiBox->setRect( QRectF(myRect) );
+    replot();
+}
+
+void SlsQt1DPlot::DisableRoiBox() {
+    if (roiBox != nullptr) {
+        roiBox->detach();
+        replot();
+    }
+}
+
+
 void SlsQt1DPlot::UnZoom() {
     setAxisScale(QwtPlot::xBottom, zoomer->x(), zoomer->x() + zoomer->w());
     setAxisScale(QwtPlot::yLeft, zoomer->y(), zoomer->y() + zoomer->h());
@@ -580,3 +604,5 @@ void SlsQt1DPlot::DisableZoom(bool disable) {
         }
     }
 }
+
+} // namespace sls

slsDetectorGui/slsDetectorPlotting/src/SlsQt1DZoomer.cpp

@@ -7,6 +7,8 @@
 #include <qwt_plot.h>
 #include <qwt_scale_div.h>
 
+namespace sls {
+
 void SlsQt1DZoomer::ResetZoomBase() {
     SetZoomBase(x0, y0, x1 - x0,
                 y1 - y0); // for going between log and nonlog plots
@@ -93,3 +95,5 @@ void SlsQt1DZoomer::ExtendZoomBase(SlsQtH1D *h) {
 
     ResetZoomBase();
 }
+
+} // namespace sls

slsDetectorGui/slsDetectorPlotting/src/SlsQt2DHist.cpp

@@ -9,6 +9,8 @@
 using std::cout;
 using std::endl;
 
+namespace sls {
+
 SlsQt2DHist::SlsQt2DHist(int nbinsx, double xmin, double xmax, int nbinsy,
                          double ymin, double ymax, double *d, double zmin,
                          double zmax)
@@ -143,3 +145,5 @@ double SlsQt2DHist::SetMinimumToFirstGreaterThanZero() {
 
     return z_min;
 }
+
+} // namespace sls

slsDetectorGui/slsDetectorPlotting/src/SlsQt2DPlot.cpp

@@ -18,6 +18,8 @@
 #include <cmath>
 #include <iostream>
 
+namespace sls {
+
 SlsQt2DPlot::SlsQt2DPlot(QWidget *parent) : QwtPlot(parent) {
     isLog = 0;
     axisScaleEngine(QwtPlot::yLeft)->setAttribute(QwtScaleEngine::Floating);
@@ -290,3 +292,26 @@ void SlsQt2DPlot::showSpectrogram(bool on) {
     d_spectrogram->setDefaultContourPen(on ? QPen() : QPen(Qt::NoPen));
     Update();
 }
+
+void SlsQt2DPlot::EnableRoiBox(std::array<int, 4> roi) {
+    if (roiBox == nullptr) {
+        roiBox = new QwtPlotShapeItem();
+    }
+    roiBox->setPen(QColor(Qt::yellow), 2.0, Qt::SolidLine);
+
+    // TopLeft - BottomRight (max points are +1 on graph)
+    QRect myRect(QPoint(roi[0], roi[2]), QPoint(roi[1] - 1, roi[3] - 1));
+    roiBox->setRect( QRectF(myRect) );
+
+    roiBox->attach(this);
+    replot();
+}
+
+void SlsQt2DPlot::DisableRoiBox() {
+    if (roiBox != nullptr) {
+        roiBox->detach();
+        replot();
+    }
+}
+
+} // namespace sls

slsDetectorGui/src/qCloneWidget.cpp

@@ -11,6 +11,8 @@
 #include <QPainter>
 #include <qwt_text.h>
 
+namespace sls {
+
 int qCloneWidget::NumClones{0};
 
 qCloneWidget::qCloneWidget(QWidget *parent, SlsQt1DPlot *p1, SlsQt2DPlot *p2,
@@ -44,7 +46,7 @@ qCloneWidget::~qCloneWidget() {
 void qCloneWidget::SetupWidgetWindow(QString title) {
 
     std::string winTitle = std::string("Snapshot:") + std::to_string(id) +
-                           std::string("  -  ") + sls::Logger::Timestamp();
+                           std::string("  -  ") + Logger::Timestamp();
     setWindowTitle(QString(winTitle.c_str()));
 
     boxPlot->setFont(QFont("Sans Serif", qDefs::Q_FONT_SIZE, QFont::Normal));
@@ -147,3 +149,5 @@ void qCloneWidget::resizeEvent(QResizeEvent *event) {
     }
     event->accept();
 }
+
+} // namespace sls

slsDetectorGui/src/qDacWidget.cpp

@@ -3,7 +3,9 @@
 #include "qDacWidget.h"
 #include "qDefs.h"
 
-qDacWidget::qDacWidget(QWidget *parent, sls::Detector *detector, bool d,
+namespace sls {
+
+qDacWidget::qDacWidget(QWidget *parent, Detector *detector, bool d,
                        std::string n, slsDetectorDefs::dacIndex i)
     : QWidget(parent), det(detector), isDac(d), index(i) {
     setupUi(this);
@@ -94,3 +96,5 @@ void qDacWidget::Refresh() {
         GetAdc();
     }
 }
+
+} // namespace sls

slsDetectorGui/src/qDetectorMain.cpp

@@ -59,7 +59,7 @@ int main(int argc, char **argv) {
 
         case 'f':
             fname = optarg;
-            LOG(logDEBUG) << long_options[option_index].name << " " << optarg;
+            LOG(sls::logDEBUG) << long_options[option_index].name << " " << optarg;
             break;
 
         case 'd':
@@ -72,7 +72,7 @@ int main(int argc, char **argv) {
 
         case 'v':
             tempval = APIGUI;
-            LOG(logINFO) << "SLS Detector GUI " << GITBRANCH << " (0x"
+            LOG(sls::logINFO) << "SLS Detector GUI " << GITBRANCH << " (0x"
                          << std::hex << tempval << ")";
             return 0;
 
@@ -88,7 +88,7 @@ int main(int argc, char **argv) {
                 "i. Default: 0. Required \n" +
                 "\t                            only when more than one multi "
                 "detector object is needed.\n\n";
-            LOG(logERROR) << help_message;
+            LOG(sls::logERROR) << help_message;
             return -1;
         }
     }
@@ -96,16 +96,18 @@ int main(int argc, char **argv) {
     QApplication app(argc, argv);
     app.setStyle(new QPlastiqueStyle); // style is deleted by QApplication
     try {
-        qDetectorMain det(multiId, fname, isDeveloper);
+        sls::qDetectorMain det(multiId, fname, isDeveloper);
         det.show();
         app.exec();
     } catch (const std::exception &e) {
-        qDefs::Message(qDefs::CRITICAL,
+        sls::qDefs::Message(sls::qDefs::CRITICAL,
                        std::string(e.what()) + "\nExiting Gui :'( ", "main");
     }
     return 0;
 }
 
+namespace sls {
+
 qDetectorMain::qDetectorMain(int multiId, const std::string &fname,
                              bool isDevel)
     : QMainWindow(nullptr), detType(slsDetectorDefs::GENERIC),
@@ -195,6 +197,7 @@ void qDetectorMain::SetUpWidgetWindow() {
     tabs->setTabEnabled(ADVANCED, false);
     tabs->setTabEnabled(DEVELOPER, isDeveloper);
     actionLoadTrimbits->setVisible(false);
+    actionSaveTrimbits->setVisible(false);
 
     dockWidgetPlot->setFloating(false);
     dockWidgetPlot->setFeatures(QDockWidget::NoDockWidgetFeatures);
@@ -212,7 +215,7 @@ void qDetectorMain::SetUpWidgetWindow() {
 void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
 
     // instantiate detector and set window title
-    det = sls::make_unique<sls::Detector>(multiID);
+    det = make_unique<Detector>(multiID);
 
     // create messages tab to capture config file loading logs
     tabMessages = new qTabMessages(this);
@@ -225,10 +228,12 @@ void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
     detType = det->getDetectorType().tsquash(
         "Different detector type for all modules.");
     actionLoadTrimbits->setEnabled(false);
+    actionSaveTrimbits->setEnabled(false);
     switch (detType) {
     case slsDetectorDefs::EIGER:
     case slsDetectorDefs::MYTHEN3:
         actionLoadTrimbits->setEnabled(true);
+        actionSaveTrimbits->setEnabled(true);
         break;
     case slsDetectorDefs::GOTTHARD:
     case slsDetectorDefs::JUNGFRAU:
@@ -238,15 +243,15 @@ void qDetectorMain::SetUpDetector(const std::string &config_file, int multiID) {
     default:
         std::ostringstream os;
         os << det->getHostname() << " has "
-           << sls::ToString(det->getDetectorType().squash())
+           << ToString(det->getDetectorType().squash())
            << " detector type (" << std::to_string(detType)
            << "). Exiting GUI.";
         std::string errorMess = os.str();
-        throw sls::RuntimeError(errorMess.c_str());
+        throw RuntimeError(errorMess.c_str());
     }
     std::ostringstream os;
     os << "SLS Detector GUI : "
-       << sls::ToString(det->getDetectorType().squash()) << " - "
+       << ToString(det->getDetectorType().squash()) << " - "
        << det->getHostname();
     std::string title = os.str();
     LOG(logINFO) << title;
@@ -339,9 +344,9 @@ void qDetectorMain::EnableModes(QAction *action) {
         enable = actionExpert->isChecked();
 
         tabs->setTabEnabled(ADVANCED, enable);
-        actionLoadTrimbits->setVisible(enable &&
-                                       (detType == slsDetectorDefs::EIGER ||
-                                        detType == slsDetectorDefs::MYTHEN3));
+        bool visible = enable && (detType == slsDetectorDefs::EIGER || detType == slsDetectorDefs::MYTHEN3);
+        actionLoadTrimbits->setVisible(visible);
+        actionSaveTrimbits->setVisible(visible);
         tabSettings->SetExportMode(enable);
         LOG(logINFO) << "Expert Mode: " << qDefs::stringEnable(enable);
     }
@@ -417,6 +422,22 @@ void qDetectorMain::ExecuteUtilities(QAction *action) {
                 LOG(logINFO) << "Trimbits loaded successfully";
             }
         }
+
+        else if (action == actionSaveTrimbits) {
+            QString fPath =
+                QString((det->getSettingsPath().squash("/tmp/")).c_str());
+            LOG(logDEBUG) << "Saving Trimbits";
+            QString fName = QFileDialog::getSaveFileName(
+                this, tr("Save Detector Trimbits"), fPath,
+                tr("Trimbit files (*.trim noise.sn*);;All Files(*)"));
+            if (!fName.isEmpty()) {
+                det->saveTrimbits(std::string(fName.toAscii().constData()));
+                qDefs::Message(qDefs::INFORMATION,
+                               "The Trimbits have been saved successfully.",
+                               "qDetectorMain::ExecuteUtilities");
+                LOG(logINFO) << "Trimbits saved successfully";
+            }
+        }
     }
     CATCH_DISPLAY("Could not execute utilities.",
                   "qDetectorMain::ExecuteUtilities")
@@ -441,10 +462,10 @@ void qDetectorMain::ExecuteHelp(QAction *action) {
         LOG(logINFO) << "About Common GUI for Jungfrau, Eiger, Mythen3, "
                         "Gotthard, Gotthard2 and Moench detectors";
 
-        std::string guiVersion = sls::ToStringHex(APIGUI);
+        std::string guiVersion = ToStringHex(APIGUI);
         std::string clientVersion = "unknown";
         try {
-            clientVersion = sls::ToStringHex(det->getClientVersion());
+            clientVersion = ToStringHex(det->getClientVersion());
         }
         CATCH_DISPLAY("Could not get client version.",
                       "qDetectorMain::ExecuteHelp")
@@ -577,6 +598,8 @@ void qDetectorMain::EnableTabs(bool enable) {
     tabs->setTabEnabled(ADVANCED, expertTab);
     actionLoadTrimbits->setVisible(expertTab &&
                                    detType == slsDetectorDefs::EIGER);
+    actionSaveTrimbits->setVisible(expertTab &&
+                                   detType == slsDetectorDefs::EIGER);
 
     // moved to here, so that its all in order, instead of signals and different
     // threads
@@ -609,3 +632,5 @@ void qDetectorMain::SetZoomToolTip(bool disable) {
     else
         dockWidgetPlot->setToolTip(zoomToolTip);
 }
+
+} // namespace sls

slsDetectorGui/src/qDrawPlot.cpp

@@ -14,7 +14,9 @@
 #include <QResizeEvent>
 #include <QtConcurrentRun>
 
-qDrawPlot::qDrawPlot(QWidget *parent, sls::Detector *detector)
+namespace sls {
+
+qDrawPlot::qDrawPlot(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector) {
     setupUi(this);
     SetupWidgetWindow();
@@ -278,11 +280,13 @@ void qDrawPlot::Select1dPlot(bool enable) {
 }
 
 void qDrawPlot::SetPlotTitlePrefix(QString title) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Title to " << title.toAscii().constData();
     plotTitlePrefix = title;
 }
 
 void qDrawPlot::SetXAxisTitle(QString title) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting X Axis Title to " << title.toAscii().constData();
     if (is1d) {
         xTitle1d = title;
@@ -292,6 +296,7 @@ void qDrawPlot::SetXAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetYAxisTitle(QString title) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Y Axis Title to " << title.toAscii().constData();
     if (is1d) {
         yTitle1d = title;
@@ -301,6 +306,7 @@ void qDrawPlot::SetYAxisTitle(QString title) {
 }
 
 void qDrawPlot::SetZAxisTitle(QString title) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Z Axis Title to " << title.toAscii().constData();
     zTitle2d = title;
 }
@@ -318,6 +324,7 @@ void qDrawPlot::SetXYRangeChanged(bool disable, double *xy, bool *isXY) {
 }
 
 void qDrawPlot::SetZRange(double *z, bool *isZ) {
+    std::lock_guard<std::mutex> lock(mPlots);
     std::copy(z, z + 2, zRange);
     std::copy(isZ, isZ + 2, isZRange);
 }
@@ -351,6 +358,7 @@ double qDrawPlot::GetYMaximum() {
 }
 
 void qDrawPlot::SetDataCallBack(bool enable) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting data call back to " << std::boolalpha << enable
                  << std::noboolalpha;
     try {
@@ -369,6 +377,7 @@ void qDrawPlot::SetDataCallBack(bool enable) {
 }
 
 void qDrawPlot::SetBinary(bool enable, int from, int to) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << (enable ? "Enabling" : "Disabling")
                  << " Binary output from " << from << " to " << to;
     binaryFrom = from;
@@ -377,6 +386,7 @@ void qDrawPlot::SetBinary(bool enable, int from, int to) {
 }
 
 void qDrawPlot::SetPersistency(int val) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting Persistency to " << val;
     persistency = val;
 }
@@ -458,17 +468,20 @@ void qDrawPlot::ResetAccumulate() {
 }
 
 void qDrawPlot::DisplayStatistics(bool enable) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << (enable ? "Enabling" : "Disabling")
                  << " Statistics Display";
     displayStatistics = enable;
 }
 
 void qDrawPlot::SetNumDiscardBits(int value) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << "Setting number of bits to discard: " << value;
     numDiscardBits = value;
 }
 
 void qDrawPlot::EnableGainPlot(bool enable) {
+    std::lock_guard<std::mutex> lock(mPlots);
     LOG(logINFO) << (enable ? "Enabling" : "Disabling") << " Gain Plot";
     hasGainData = enable;
 }
@@ -609,6 +622,13 @@ void qDrawPlot::SavePlot() {
     }
 }
 
+void qDrawPlot::SetGapPixels(bool enable) {
+    LOG(logDEBUG) << "Gap pixels enabled";
+    std::lock_guard<std::mutex> lock(mPlots);
+    isGapPixels = enable;
+}
+
+
 void qDrawPlot::GetStatistics(double &min, double &max, double &sum) {
     LOG(logDEBUG) << "Calculating Statistics";
     double *array = data2d;
@@ -642,6 +662,7 @@ void qDrawPlot::StartAcquisition() {
     currentFrame = 0;
     boxPlot->setTitle("Old Plot");
     det->clearAcquiringFlag(); // (from previous exit) or if running
+    isRxRoiDisplayed = false;
 
     // ensure data streaming in receiver (if plot enabled)
     if (isPlot) {
@@ -709,7 +730,7 @@ void qDrawPlot::AcquisitionFinished(double currentProgress,
                                     int detectorStatus) {
     progress = currentProgress;
     std::string status =
-        sls::ToString(static_cast<slsDetectorDefs::runStatus>(detectorStatus));
+        ToString(static_cast<slsDetectorDefs::runStatus>(detectorStatus));
 
     if (detectorStatus == slsDetectorDefs::ERROR) {
         qDefs::Message(qDefs::WARNING,
@@ -742,6 +763,7 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
                   << "  \t dynamic range: " << data->dynamicRange << std::endl
                   << "  \t file index: " << data->fileIndex << std::endl
                   << "  \t complete image: " << data->completeImage << std::endl
+                  << "  \t rx Roi: " << ToString(data->rxRoi) << std::endl
                   << "  ]";
 
     progress = data->progressIndex;
@@ -749,6 +771,22 @@ void qDrawPlot::GetData(detectorData *data, uint64_t frameIndex,
     currentFrame = frameIndex;
     LOG(logDEBUG) << "[ Progress:" << progress << "%, Frame:" << currentFrame
                   << " ]";
+    if (!isRxRoiDisplayed) {
+        rxRoi.xmin = data->rxRoi[0];
+        rxRoi.xmax = data->rxRoi[1];
+        rxRoi.ymin = data->rxRoi[2];
+        rxRoi.ymax = data->rxRoi[3];
+        // only for 2d anyway
+        if (isGapPixels) {
+            rxRoi.xmin += ((rxRoi.xmin/1024) * 6 + (rxRoi.xmin/256) * 2);
+            rxRoi.xmax += ((rxRoi.xmax/1024) * 6 + (rxRoi.xmax/256) * 2);
+            rxRoi.ymin += ((rxRoi.ymin/512) * 34 + (rxRoi.ymin/256) * 2);
+            rxRoi.ymax += ((rxRoi.ymax/512) * 34 + (rxRoi.ymax/256) * 2);
+            LOG(logINFO) << "Rx_roi recalculated with gap pixels: " << ToString(rxRoi);
+        }
+        LOG(logDEBUG) << "Rx_roi: " << ToString(rxRoi);
+    }
+    
 
     // 1d check if npixelX has changed (m3 for different counters enabled)
     if (is1d && static_cast<int>(nPixelsX) != data->nx) {
@@ -987,6 +1025,26 @@ void qDrawPlot::Update1dPlot() {
         xyRangeChanged = false;
     }
     plot1d->DisableZoom(disableZoom);
+    if (!isRxRoiDisplayed) {
+        isRxRoiDisplayed = true;
+        if (rxRoi.completeRoi()) {
+            plot1d->DisableRoiBox();
+            if (isGainDataExtracted) {
+                gainplot1d->DisableRoiBox();
+            }
+            lblRxRoiEnabled->hide();
+        } else {
+            plot1d->EnableRoiBox(std::array<int, 4>{rxRoi.xmin, rxRoi.xmax, (int)plot1d->GetYMinimum(), (int)plot1d->GetYMaximum()});
+            if (isGainDataExtracted) {
+                gainplot1d->EnableRoiBox(std::array<int, 4>{rxRoi.xmin, rxRoi.xmax, 0, 3});
+            }
+            lblRxRoiEnabled->show();
+        }
+    }
+    // ymin and ymax could change (so replot roi every time)
+    if (!rxRoi.completeRoi()) {
+        plot1d->EnableRoiBox(std::array<int, 4>{rxRoi.xmin, rxRoi.xmax, (int)plot1d->GetYMinimum(), (int)plot1d->GetYMaximum()});
+    } 
 }
 
 void qDrawPlot::Update2dPlot() {
@@ -1015,6 +1073,22 @@ void qDrawPlot::Update2dPlot() {
     }
     plot2d->DisableZoom(disableZoom);
     plot2d->SetZRange(isZRange[0], isZRange[1], zRange[0], zRange[1]);
+    if (!isRxRoiDisplayed) {
+        isRxRoiDisplayed = true;
+        if (rxRoi.completeRoi()) {
+            plot2d->DisableRoiBox();
+            if (isGainDataExtracted) {
+                gainplot2d->DisableRoiBox();
+            }
+            lblRxRoiEnabled->hide();
+        } else {
+            plot2d->EnableRoiBox(rxRoi.getIntArray());
+            if (isGainDataExtracted) {
+                gainplot2d->EnableRoiBox(rxRoi.getIntArray());
+            }
+            lblRxRoiEnabled->show();
+        }
+    }
 }
 
 void qDrawPlot::Update1dXYRange() {
@@ -1200,3 +1274,5 @@ void qDrawPlot::UpdatePlot() {
 
     LOG(logDEBUG) << "End of Update Plot";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabAdvanced.cpp

@@ -5,7 +5,9 @@
 #include "qDrawPlot.h"
 #include "sls/network_utils.h"
 
-qTabAdvanced::qTabAdvanced(QWidget *parent, sls::Detector *detector,
+namespace sls {
+
+qTabAdvanced::qTabAdvanced(QWidget *parent, Detector *detector,
                            qDrawPlot *p)
     : QWidget(parent), det(detector), plot(p) {
     setupUi(this);
@@ -443,7 +445,7 @@ void qTabAdvanced::SetDetectorUDPIP(bool force) {
         std::string s = dispDetectorUDPIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Detector UDP IP:" << s;
         try {
-            det->setSourceUDPIP(sls::IpAddr{s},
+            det->setSourceUDPIP(IpAddr{s},
                                 {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Detector UDP IP.",
@@ -461,7 +463,7 @@ void qTabAdvanced::SetDetectorUDPMAC(bool force) {
         std::string s = dispDetectorUDPMAC->text().toAscii().constData();
         LOG(logINFO) << "Setting Detector UDP MAC:" << s;
         try {
-            det->setSourceUDPMAC(sls::MacAddr{s},
+            det->setSourceUDPMAC(MacAddr{s},
                                  {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Detector UDP MAC.",
@@ -489,7 +491,7 @@ void qTabAdvanced::SetCltZMQIP(bool force) {
         std::string s = dispZMQIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Client ZMQ IP:" << s;
         try {
-            det->setClientZmqIp(sls::IpAddr{s},
+            det->setClientZmqIp(IpAddr{s},
                                 {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Client ZMQ IP.",
@@ -547,7 +549,7 @@ void qTabAdvanced::SetRxrUDPIP(bool force) {
         std::string s = dispRxrUDPIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Receiver UDP IP:" << s;
         try {
-            det->setDestinationUDPIP(sls::IpAddr{s},
+            det->setDestinationUDPIP(IpAddr{s},
                                      {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Receiver UDP IP.",
@@ -565,7 +567,7 @@ void qTabAdvanced::SetRxrUDPMAC(bool force) {
         std::string s = dispRxrUDPMAC->text().toAscii().constData();
         LOG(logINFO) << "Setting Receiver UDP MAC:" << s;
         try {
-            det->setDestinationUDPMAC(sls::MacAddr{s},
+            det->setDestinationUDPMAC(MacAddr{s},
                                       {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Receiver UDP MAC.",
@@ -593,7 +595,7 @@ void qTabAdvanced::SetRxrZMQIP(bool force) {
         std::string s = dispRxrZMQIP->text().toAscii().constData();
         LOG(logINFO) << "Setting Receiver ZMQ IP:" << s;
         try {
-            det->setRxZmqIP(sls::IpAddr{s}, {comboDetector->currentIndex()});
+            det->setRxZmqIP(IpAddr{s}, {comboDetector->currentIndex()});
         }
         CATCH_HANDLE("Could not set Receiver ZMQ IP.",
                      "qTabAdvanced::SetRxrZMQIP", this,
@@ -891,3 +893,5 @@ void qTabAdvanced::Refresh() {
     }
     LOG(logDEBUG) << "**Updated Advanced Tab";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabDataOutput.cpp

@@ -11,7 +11,9 @@
 
 #include <unistd.h>
 
-qTabDataOutput::qTabDataOutput(QWidget *parent, sls::Detector *detector)
+namespace sls {
+
+qTabDataOutput::qTabDataOutput(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector), btnGroupRate(nullptr) {
     setupUi(this);
     SetupWidgetWindow();
@@ -232,7 +234,7 @@ void qTabDataOutput::GetFileFormat() {
             comboFileFormat->setCurrentIndex(static_cast<int>(retval));
             break;
         default:
-            throw sls::RuntimeError(std::string("Unknown file format: ") +
+            throw RuntimeError(std::string("Unknown file format: ") +
                                     std::to_string(static_cast<int>(retval)));
         }
     }
@@ -339,7 +341,7 @@ void qTabDataOutput::EnableRateCorrection() {
     LOG(logINFO) << "Disabling Rate correction";
     // disable
     try {
-        det->setRateCorrection(sls::ns(0));
+        det->setRateCorrection(ns(0));
     }
     CATCH_HANDLE("Could not switch off rate correction.",
                  "qTabDataOutput::EnableRateCorrection", this,
@@ -357,7 +359,7 @@ void qTabDataOutput::SetRateCorrection() {
             int64_t deadtime = spinCustomDeadTime->value();
             LOG(logINFO) << "Setting Rate Correction with custom dead time: "
                          << deadtime;
-            det->setRateCorrection(sls::ns(deadtime));
+            det->setRateCorrection(ns(deadtime));
         }
         // default dead time
         else {
@@ -442,3 +444,5 @@ void qTabDataOutput::Refresh() {
 
     LOG(logDEBUG) << "**Updated DataOutput Tab";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabDebugging.cpp

@@ -7,7 +7,9 @@
 #include <QGridLayout>
 #include <QTreeWidget>
 
-qTabDebugging::qTabDebugging(QWidget *parent, sls::Detector *detector)
+namespace sls {
+
+qTabDebugging::qTabDebugging(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector), treeDet(nullptr),
       lblDetectorHostname(nullptr), lblDetectorFirmware(nullptr),
       lblDetectorSoftware(nullptr) {
@@ -62,7 +64,7 @@ void qTabDebugging::GetDetectorStatus() {
     LOG(logDEBUG) << "Getting Status";
 
     try {
-        std::string status = sls::ToString(
+        std::string status = ToString(
             det->getDetectorStatus({comboDetector->currentIndex()})[0]);
         lblStatus->setText(QString(status.c_str()).toUpper());
     }
@@ -88,7 +90,7 @@ void qTabDebugging::GetInfo() {
     lblDetectorFirmware->setFixedWidth(100);
     layout->addWidget(dispFrame, 0, 1);
     QString detName =
-        QString(sls::ToString(det->getDetectorType().squash()).c_str());
+        QString(ToString(det->getDetectorType().squash()).c_str());
 
     switch (det->getDetectorType().squash()) {
 
@@ -241,3 +243,5 @@ void qTabDebugging::Refresh() {
     GetDetectorStatus();
     LOG(logDEBUG) << "**Updated Debugging Tab";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabDeveloper.cpp

@@ -4,7 +4,9 @@
 #include "qDacWidget.h"
 #include "qDefs.h"
 
-qTabDeveloper::qTabDeveloper(QWidget *parent, sls::Detector *detector)
+namespace sls {
+
+qTabDeveloper::qTabDeveloper(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector) {
     setupUi(this);
     SetupWidgetWindow();
@@ -16,12 +18,6 @@ qTabDeveloper::~qTabDeveloper() {}
 void qTabDeveloper::SetupWidgetWindow() {
     int tempid = 0;
 
-    comboHV->hide();
-    lblComboHV->hide();
-    lblSpinHV->hide();
-    spinHV->hide();
-    hvmin = HV_MIN;
-
     try {
         slsDetectorDefs::detectorType detType = det->getDetectorType().squash();
         switch (detType) {
@@ -82,8 +78,6 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::GOTTHARD:
-            comboHV->show();
-            lblComboHV->show();
             dacWidgets.push_back(new qDacWidget(
                 this, det, true,
                 "v Reference: ", getSLSIndex(detType, tempid++)));
@@ -117,8 +111,6 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::JUNGFRAU:
-            lblSpinHV->show();
-            spinHV->show();
             dacWidgets.push_back(
                 new qDacWidget(this, det, true,
                                "v vb comp: ", getSLSIndex(detType, tempid++)));
@@ -148,8 +140,6 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::MOENCH:
-            lblSpinHV->show();
-            spinHV->show();
             dacWidgets.push_back(
                 new qDacWidget(this, det, true,
                                "vbp_colbuf: ", getSLSIndex(detType, tempid++)));
@@ -173,9 +163,6 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::MYTHEN3:
-            lblSpinHV->show();
-            spinHV->show();
-            hvmin = 0;
             dacWidgets.push_back(new qDacWidget(
                 this, det, true, "vcassh: ", getSLSIndex(detType, tempid++)));
             dacWidgets.push_back(new qDacWidget(
@@ -216,9 +203,6 @@ void qTabDeveloper::SetupWidgetWindow() {
             break;
 
         case slsDetectorDefs::GOTTHARD2:
-            lblSpinHV->show();
-            spinHV->show();
-            hvmin = 0;
             dacWidgets.push_back(
                 new qDacWidget(this, det, true,
                                "vref_h_adc: ", getSLSIndex(detType, tempid++)));
@@ -290,9 +274,6 @@ void qTabDeveloper::SetupWidgetWindow() {
 void qTabDeveloper::Initialization() {
     connect(comboDetector, SIGNAL(currentIndexChanged(int)), this,
             SLOT(Refresh()));
-    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(SetHighVoltage()));
-    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
 }
 
 void qTabDeveloper::PopulateDetectors() {
@@ -309,75 +290,6 @@ void qTabDeveloper::PopulateDetectors() {
     comboDetector->setCurrentIndex(0);
 }
 
-void qTabDeveloper::GetHighVoltage() {
-    // not enabled for eiger
-    if (!comboHV->isVisible() && !spinHV->isVisible())
-        return;
-    LOG(logDEBUG) << "Getting High Voltage";
-    disconnect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-    disconnect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-               SLOT(SetHighVoltage()));
-    try {
-        // dac units
-        auto retval = det->getHighVoltage({comboDetector->currentIndex() - 1})
-                          .tsquash("Inconsistent values for high voltage.");
-        // spinHV
-        if (spinHV->isVisible()) {
-            if (retval != 0 && retval < hvmin && retval > HV_MAX) {
-                throw sls::RuntimeError(std::string("Unknown High Voltage: ") +
-                                        std::to_string(retval));
-            }
-            spinHV->setValue(retval);
-        }
-        // combo HV
-        else {
-            switch (retval) {
-            case 0:
-                comboHV->setCurrentIndex(HV_0);
-                break;
-            case 90:
-                comboHV->setCurrentIndex(HV_90);
-                break;
-            case 110:
-                comboHV->setCurrentIndex(HV_110);
-                break;
-            case 120:
-                comboHV->setCurrentIndex(HV_120);
-                break;
-            case 150:
-                comboHV->setCurrentIndex(HV_150);
-                break;
-            case 180:
-                comboHV->setCurrentIndex(HV_180);
-                break;
-            case 200:
-                comboHV->setCurrentIndex(HV_200);
-                break;
-            default:
-                throw sls::RuntimeError(std::string("Unknown High Voltage: ") +
-                                        std::to_string(retval));
-            }
-        }
-    }
-    CATCH_DISPLAY("Could not get high voltage.",
-                  "qTabDeveloper::GetHighVoltage")
-    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
-    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
-            SLOT(SetHighVoltage()));
-}
-
-void qTabDeveloper::SetHighVoltage() {
-    int val = (comboHV->isVisible() ? comboHV->currentText().toInt()
-                                    : spinHV->value());
-    LOG(logINFO) << "Setting high voltage:" << val;
-
-    try {
-        det->setHighVoltage({comboDetector->currentIndex() - 1});
-    }
-    CATCH_HANDLE("Could not set high voltage.", "qTabDeveloper::SetHighVoltage",
-                 this, &qTabDeveloper::GetHighVoltage)
-}
-
 slsDetectorDefs::dacIndex
 qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
     switch (detType) {
@@ -431,7 +343,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 22:
             return slsDetectorDefs::TEMPERATURE_FPGA;
         default:
-            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
+            throw RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -458,7 +370,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 9:
             return slsDetectorDefs::TEMPERATURE_FPGA;
         default:
-            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
+            throw RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -484,7 +396,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 8:
             return slsDetectorDefs::TEMPERATURE_ADC;
         default:
-            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
+            throw RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -508,7 +420,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 7:
             return slsDetectorDefs::IBIAS_SFP;
         default:
-            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
+            throw RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -550,7 +462,7 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 16:
             return slsDetectorDefs::VTHRESHOLD;
         default:
-            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
+            throw RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
@@ -586,13 +498,13 @@ qTabDeveloper::getSLSIndex(slsDetectorDefs::detectorType detType, int index) {
         case 13:
             return slsDetectorDefs::VCOM_ADC2;
         default:
-            throw sls::RuntimeError(std::string("Unknown dac/adc index") +
+            throw RuntimeError(std::string("Unknown dac/adc index") +
                                     std::to_string(index));
         }
         break;
 
     default:
-        throw sls::RuntimeError(std::string("Unknown detector type"));
+        throw RuntimeError(std::string("Unknown detector type"));
     }
 }
 
@@ -604,6 +516,7 @@ void qTabDeveloper::Refresh() {
     for (const auto &it : adcWidgets) {
         it->SetDetectorIndex(comboDetector->currentIndex() - 1);
     }
-    GetHighVoltage();
     LOG(logDEBUG) << "**Updated Developer Tab";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabMeasurement.cpp

@@ -7,7 +7,9 @@
 #include <QStandardItemModel>
 #include <QTimer>
 
-qTabMeasurement::qTabMeasurement(QWidget *parent, sls::Detector *detector,
+namespace sls {
+
+qTabMeasurement::qTabMeasurement(QWidget *parent, Detector *detector,
                                  qDrawPlot *p)
     : QWidget(parent), det(detector), plot(p), progressTimer(nullptr) {
     setupUi(this);
@@ -337,9 +339,26 @@ void qTabMeasurement::GetTimingMode() {
     disconnect(comboTimingMode, SIGNAL(currentIndexChanged(int)), this,
                SLOT(SetTimingMode(int)));
     try {
+        
+        slsDetectorDefs::timingMode retval{slsDetectorDefs::AUTO_TIMING};
+        // m3: remove slave modes (always trigger) before squashing
+        if (det->getDetectorType().squash() == slsDetectorDefs::MYTHEN3) {
+            auto retvals = det->getTimingMode();
+            auto is_master = det->getMaster();
+            Result<slsDetectorDefs::timingMode> masterRetvals;
+            for (size_t i = 0; i != is_master.size(); ++i) {
+                if (is_master[i]) {
+                    masterRetvals.push_back(retvals[i]);
+                }
+            }
+            retval = masterRetvals.tsquash(
+                "Inconsistent timing mode for all detectors.");
+        } else {
+            retval = det->getTimingMode().tsquash(
+                "Inconsistent timing mode for all detectors.");
+        }
+
         auto oldMode = comboTimingMode->currentIndex();
-        auto retval = det->getTimingMode().tsquash(
-            "Inconsistent timing mode for all detectors.");
         switch (retval) {
         case slsDetectorDefs::AUTO_TIMING:
         case slsDetectorDefs::TRIGGER_EXPOSURE:
@@ -353,7 +372,7 @@ void qTabMeasurement::GetTimingMode() {
             }
             break;
         default:
-            throw sls::RuntimeError(std::string("Unknown timing mode: ") +
+            throw RuntimeError(std::string("Unknown timing mode: ") +
                                     std::to_string(retval));
         }
     }
@@ -390,7 +409,7 @@ void qTabMeasurement::GetBurstMode() {
             ShowTriggerDelay();
             break;
         default:
-            throw sls::RuntimeError(std::string("Unknown burst mode: ") +
+            throw RuntimeError(std::string("Unknown burst mode: ") +
                                     std::to_string(retval));
         }
     }
@@ -1000,3 +1019,5 @@ void qTabMeasurement::Refresh() {
 
     LOG(logDEBUG) << "**Updated Measurement Tab";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabMessages.cpp

@@ -11,6 +11,8 @@
 #include <QTextStream>
 #include <string>
 
+namespace sls {
+
 qTabMessages::qTabMessages(QWidget *parent) : QWidget(parent) {
     setupUi(this);
     SetupWidgetWindow();
@@ -142,3 +144,5 @@ void qTabMessages::Refresh() {
     dispCommand->clear();
     dispCommand->setFocus();
 }
+
+} // namespace sls

slsDetectorGui/src/qTabPlot.cpp

@@ -6,6 +6,8 @@
 #include <QStackedLayout>
 #include <QStandardItemModel>
 
+namespace sls {
+
 QString qTabPlot::defaultPlotTitle("");
 QString qTabPlot::defaultHistXAxisTitle("Channel Number");
 QString qTabPlot::defaultHistYAxisTitle("Counts");
@@ -13,7 +15,7 @@ QString qTabPlot::defaultImageXAxisTitle("Pixel");
 QString qTabPlot::defaultImageYAxisTitle("Pixel");
 QString qTabPlot::defaultImageZAxisTitle("Intensity");
 
-qTabPlot::qTabPlot(QWidget *parent, sls::Detector *detector, qDrawPlot *p)
+qTabPlot::qTabPlot(QWidget *parent, Detector *detector, qDrawPlot *p)
     : QWidget(parent), det(detector), plot(p), is1d(false) {
     setupUi(this);
     SetupWidgetWindow();
@@ -74,6 +76,10 @@ void qTabPlot::SetupWidgetWindow() {
     // set zmq high water mark to GUI_ZMQ_RCV_HWM (2)
     spinSndHwm->setValue(qDefs::GUI_ZMQ_RCV_HWM);
     spinRcvHwm->setValue(qDefs::GUI_ZMQ_RCV_HWM);
+
+    if (chkGapPixels->isEnabled()) {
+        chkGapPixels->setChecked(true);
+    }
 }
 
 void qTabPlot::Initialization() {
@@ -327,6 +333,7 @@ void qTabPlot::SetGapPixels(bool enable) {
     LOG(logINFO) << "Setting Gap Pixels Enable to " << enable;
     try {
         det->setGapPixelsinCallback(enable);
+        plot->SetGapPixels(enable);
     }
     CATCH_HANDLE("Could not set gap pixels enable.", "qTabPlot::SetGapPixels",
                  this, &qTabPlot::GetGapPixels)
@@ -792,3 +799,5 @@ void qTabPlot::Refresh() {
 
     LOG(logDEBUG) << "**Updated Plot Tab";
 }
+
+} // namespace sls

slsDetectorGui/src/qTabSettings.cpp

@@ -6,7 +6,9 @@
 #include "sls/bit_utils.h"
 #include <QStandardItemModel>
 
-qTabSettings::qTabSettings(QWidget *parent, sls::Detector *detector)
+namespace sls {
+
+qTabSettings::qTabSettings(QWidget *parent, Detector *detector)
     : QWidget(parent), det(detector) {
     setupUi(this);
     SetupWidgetWindow();
@@ -17,6 +19,12 @@ qTabSettings::~qTabSettings() {}
 
 void qTabSettings::SetupWidgetWindow() {
 
+    comboHV->hide();
+    lblComboHV->hide();
+    lblSpinHV->hide();
+    spinHV->hide();
+    hvmin = HV_MIN;
+
     counters = std::vector<QCheckBox *>{chkCounter1, chkCounter2, chkCounter3};
 
     spinThreshold2->hide();
@@ -35,6 +43,9 @@ void qTabSettings::SetupWidgetWindow() {
     // enabling according to det type
     slsDetectorDefs::detectorType detType = det->getDetectorType().squash();
     if (detType == slsDetectorDefs::MYTHEN3) {
+        lblSpinHV->show();
+        spinHV->show();
+        hvmin = 0;
         lblDynamicRange->setEnabled(true);
         comboDynamicRange->setEnabled(true);
 
@@ -75,13 +86,28 @@ void qTabSettings::SetupWidgetWindow() {
             }
         }
     } else if (detType == slsDetectorDefs::EIGER) {
+        lblSpinHV->show();
+        spinHV->show();
+        hvmin = 0;        
         lblDynamicRange->setEnabled(true);
         comboDynamicRange->setEnabled(true);
         lblThreshold->setEnabled(true);
         spinThreshold->setEnabled(true);
     } else if (detType == slsDetectorDefs::JUNGFRAU) {
+        lblSpinHV->show();
+        spinHV->show();
         lblGainMode->setEnabled(true);
         comboGainMode->setEnabled(true);
+    } else if (detType == slsDetectorDefs::GOTTHARD) {
+        comboHV->show();
+        lblComboHV->show();
+    } else if (detType == slsDetectorDefs::MOENCH) {
+        lblSpinHV->show();
+        spinHV->show();        
+    } else if (detType == slsDetectorDefs::GOTTHARD2) {
+        lblSpinHV->show();
+        spinHV->show();
+        hvmin = 0;        
     }
 
     // default settings for the disabled
@@ -163,6 +189,11 @@ void qTabSettings::ShowFixG0(bool expertMode) {
 }
 
 void qTabSettings::Initialization() {
+    // High voltage
+    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
+            SLOT(SetHighVoltage()));
+    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
+
     // Settings
     if (comboSettings->isEnabled())
         connect(comboSettings, SIGNAL(currentIndexChanged(int)), this,
@@ -199,6 +230,91 @@ void qTabSettings::Initialization() {
     }
 }
 
+void qTabSettings::GetHighVoltage() {
+    // not enabled for eiger
+    if (!comboHV->isVisible() && !spinHV->isVisible())
+        return;
+    LOG(logDEBUG) << "Getting High Voltage";
+    disconnect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
+    disconnect(comboHV, SIGNAL(currentIndexChanged(int)), this,
+               SLOT(SetHighVoltage()));
+    try {
+        Result<int> retvals = det->getHighVoltage();
+
+        int retval = 0;    
+        if (det->getDetectorType().squash() != slsDetectorDefs::EIGER) {
+            retval = retvals.tsquash("Inconsistent values for high voltage.");
+        } 
+        // eiger slaves return -999
+        else {
+
+            auto is_master = det->getMaster();
+            Result<int> master_retvals;
+            for (size_t i = 0; i != retvals.size(); ++i) {
+                if (is_master[i]) {
+                    master_retvals.push_back(retvals[i]);
+                }
+            }
+            retval = master_retvals.tsquash("Inconsistent values for high voltage.");
+        } 
+        
+        // spinHV
+        if (spinHV->isVisible()) {
+            if (retval != 0 && retval < hvmin && retval > HV_MAX) {
+                throw RuntimeError(std::string("Unknown High Voltage: ") +
+                                        std::to_string(retval));
+            }
+            spinHV->setValue(retval);
+        }
+        // combo HV
+        else {
+            switch (retval) {
+            case 0:
+                comboHV->setCurrentIndex(HV_0);
+                break;
+            case 90:
+                comboHV->setCurrentIndex(HV_90);
+                break;
+            case 110:
+                comboHV->setCurrentIndex(HV_110);
+                break;
+            case 120:
+                comboHV->setCurrentIndex(HV_120);
+                break;
+            case 150:
+                comboHV->setCurrentIndex(HV_150);
+                break;
+            case 180:
+                comboHV->setCurrentIndex(HV_180);
+                break;
+            case 200:
+                comboHV->setCurrentIndex(HV_200);
+                break;
+            default:
+                throw RuntimeError(std::string("Unknown High Voltage: ") +
+                                        std::to_string(retval));
+            }
+        }
+    }
+    CATCH_DISPLAY("Could not get high voltage.",
+                  "qTabSettings::GetHighVoltage")
+    connect(spinHV, SIGNAL(valueChanged(int)), this, SLOT(SetHighVoltage()));
+    connect(comboHV, SIGNAL(currentIndexChanged(int)), this,
+            SLOT(SetHighVoltage()));
+}
+
+void qTabSettings::SetHighVoltage() {
+    int val = (comboHV->isVisible() ? comboHV->currentText().toInt()
+                                    : spinHV->value());
+    LOG(logINFO) << "Setting high voltage:" << val;
+
+    try {
+        det->setHighVoltage(val);
+    }
+    CATCH_HANDLE("Could not set high voltage.", "qTabSettings::SetHighVoltage",
+                 this, &qTabSettings::GetHighVoltage)
+}
+
 void qTabSettings::GetSettings() {
     LOG(logDEBUG) << "Getting settings";
     disconnect(comboSettings, SIGNAL(currentIndexChanged(int)), this,
@@ -215,7 +331,7 @@ void qTabSettings::GetSettings() {
             break;
         default:
             if ((int)retval < -1 || (int)retval >= comboSettings->count()) {
-                throw sls::RuntimeError(std::string("Unknown settings: ") +
+                throw RuntimeError(std::string("Unknown settings: ") +
                                         std::to_string(retval));
             }
             comboSettings->setCurrentIndex(retval);
@@ -231,7 +347,7 @@ void qTabSettings::SetSettings(int index) {
     // settings
     auto val = static_cast<slsDetectorDefs::detectorSettings>(index);
     try {
-        LOG(logINFO) << "Setting Settings to " << sls::ToString(val);
+        LOG(logINFO) << "Setting Settings to " << ToString(val);
         det->setSettings(val);
     }
     CATCH_HANDLE("Could not set settings.", "qTabSettings::SetSettings", this,
@@ -250,7 +366,7 @@ void qTabSettings::GetGainMode() {
         auto retval = det->getGainMode().tsquash(
             "Inconsistent gain mode for all detectors.");
         if ((int)retval < 0 || (int)retval >= comboGainMode->count()) {
-            throw sls::RuntimeError(std::string("Unknown gain mode: ") +
+            throw RuntimeError(std::string("Unknown gain mode: ") +
                                     std::to_string(retval));
         }
         // warning when using fix_g0 and not in export mode
@@ -321,7 +437,7 @@ void qTabSettings::GetDynamicRange() {
             comboDynamicRange->setCurrentIndex(DYNAMICRANGE_4);
             break;
         default:
-            throw sls::RuntimeError(std::string("Unknown dynamic range: ") +
+            throw RuntimeError(std::string("Unknown dynamic range: ") +
                                     std::to_string(retval));
         }
     }
@@ -352,7 +468,7 @@ void qTabSettings::SetDynamicRange(int index) {
             det->setDynamicRange(4);
             break;
         default:
-            throw sls::RuntimeError(std::string("Unknown dynamic range: ") +
+            throw RuntimeError(std::string("Unknown dynamic range: ") +
                                     std::to_string(index));
         }
     }
@@ -399,7 +515,7 @@ void qTabSettings::SetThresholdEnergies() {
     slsDetectorDefs::detectorSettings sett =
         static_cast<slsDetectorDefs::detectorSettings>(
             comboSettings->currentIndex());
-    LOG(logINFO) << "Setting Threshold Energies to " << sls::ToString(eV)
+    LOG(logINFO) << "Setting Threshold Energies to " << ToString(eV)
                  << " (eV)";
     try {
         det->setThresholdEnergy(eV, sett);
@@ -430,7 +546,7 @@ void qTabSettings::GetCounterMask() {
     disconnect(chkCounter3, SIGNAL(toggled(bool)), this,
                SLOT(SetCounterMask()));
     try {
-        auto retval = sls::getSetBits(det->getCounterMask().tsquash(
+        auto retval = getSetBits(det->getCounterMask().tsquash(
             "Counter mask is inconsistent for all detectors."));
         // default to unchecked
         for (auto p : counters) {
@@ -439,7 +555,7 @@ void qTabSettings::GetCounterMask() {
         // if retval[i] = 2, chkCounter2 is checked
         for (auto i : retval) {
             if (i > 3) {
-                throw sls::RuntimeError(
+                throw RuntimeError(
                     std::string("Unknown counter index : ") +
                     std::to_string(static_cast<int>(i)));
             }
@@ -470,6 +586,8 @@ void qTabSettings::SetCounterMask() {
 void qTabSettings::Refresh() {
     LOG(logDEBUG) << "**Updating Settings Tab";
 
+    GetHighVoltage();
+
     if (comboSettings->isEnabled()) {
         GetSettings();
     }
@@ -496,3 +614,5 @@ void qTabSettings::Refresh() {
 
     LOG(logDEBUG) << "**Updated Settings Tab";
 }
+
+} // namespace sls

slsDetectorServers/ctbDetectorServer/slsDetectorFunctionList.c

@@ -2060,8 +2060,8 @@ void *start_timer(void *arg) {
             header->frameNumber = frameNr + iframes;
             header->packetNumber = i;
             header->modId = 0;
-            header->row = detPos[X];
-            header->column = detPos[Y];
+            header->row = detPos[Y];
+            header->column = detPos[X];
 
             // fill data
             memcpy(packetData + sizeof(sls_detector_header),

slsDetectorServers/eigerDetectorServer/Beb.c

@@ -1095,19 +1095,19 @@ int *Beb_GetDetectorPosition() { return Beb_positions; }
 int Beb_SetDetectorPosition(int pos[]) {
     if (!Beb_activated)
         return OK;
-    LOG(logINFO, ("Got Position values %d %d...\n", pos[0], pos[1]));
+    LOG(logINFO, ("Setting Position: (%d, %d)\n", pos[X], pos[Y]));
 
     // save positions
-    Beb_positions[0] = pos[0];
-    Beb_positions[1] = pos[1];
+    Beb_positions[Y] = pos[Y];
+    Beb_positions[X] = pos[X];
 
     // get left and right
-    int posLeft[2] = {pos[0], Beb_top ? pos[1] : pos[1] + 1};
-    int posRight[2] = {pos[0], Beb_top ? pos[1] + 1 : pos[1]};
+    int posLeft[2] = {Beb_top ? pos[X] : pos[X] + 1, pos[Y]};
+    int posRight[2] = {Beb_top ? pos[X] + 1 : pos[X], pos[Y]};
 
     if (Beb_quadEnable) {
-        posRight[0] = 1; // right is next row
-        posRight[1] = 0; // right same first column
+        posRight[Y] = 1; // right is next row
+        posRight[X] = 0; // right same first column
     }
 
     int ret = FAIL;
@@ -1122,7 +1122,7 @@ int Beb_SetDetectorPosition(int pos[]) {
         uint32_t value = 0;
         ret = OK;
         // x left
-        int posval = Beb_swap_uint16(posLeft[0]);
+        int posval = Beb_swap_uint16(posLeft[Y]);
         value = Beb_Read32(csp0base, UDP_HEADER_A_LEFT_OFST);
         value &= UDP_HEADER_ID_MSK; // to keep previous id value
         Beb_Write32(csp0base, UDP_HEADER_A_LEFT_OFST,
@@ -1134,7 +1134,7 @@ int Beb_SetDetectorPosition(int pos[]) {
             ret = FAIL;
         }
         // x right
-        posval = Beb_swap_uint16(posRight[0]);
+        posval = Beb_swap_uint16(posRight[Y]);
         value = Beb_Read32(csp0base, UDP_HEADER_A_RIGHT_OFST);
         value &= UDP_HEADER_ID_MSK; // to keep previous id value
         Beb_Write32(csp0base, UDP_HEADER_A_RIGHT_OFST,
@@ -1147,7 +1147,7 @@ int Beb_SetDetectorPosition(int pos[]) {
         }
 
         // y left (column)
-        posval = Beb_swap_uint16(posLeft[1]);
+        posval = Beb_swap_uint16(posLeft[X]);
         value = Beb_Read32(csp0base, UDP_HEADER_B_LEFT_OFST);
         value &= UDP_HEADER_Z_MSK; // to keep previous z value
         Beb_Write32(csp0base, UDP_HEADER_B_LEFT_OFST,
@@ -1160,7 +1160,7 @@ int Beb_SetDetectorPosition(int pos[]) {
         }
 
         // y right
-        posval = Beb_swap_uint16(posRight[1]);
+        posval = Beb_swap_uint16(posRight[X]);
         value = Beb_Read32(csp0base, UDP_HEADER_B_RIGHT_OFST);
         value &= UDP_HEADER_Z_MSK; // to keep previous z value
         Beb_Write32(csp0base, UDP_HEADER_B_RIGHT_OFST,
@@ -1176,10 +1176,10 @@ int Beb_SetDetectorPosition(int pos[]) {
         Beb_close(fd, csp0base);
     }
     if (ret == OK) {
-        LOG(logINFO, ("Position set to...\n"
+        LOG(logINFO, ("Position set to (col, row):\n"
                       "\tLeft: [%d, %d]\n"
                       "\tRight:[%d, %d]\n",
-                      posLeft[0], posLeft[1], posRight[0], posRight[1]));
+                      posLeft[X], posLeft[Y], posRight[X], posRight[Y]));
     }
 
     return ret;

slsDetectorServers/eigerDetectorServer/slsDetectorFunctionList.c

@@ -19,7 +19,7 @@
 #include <pthread.h>
 #include <time.h>
 #endif
-
+extern int portno;
 // Global variable from slsDetectorServer_funcs
 extern int debugflag;
 extern int updateFlag;
@@ -57,7 +57,6 @@ int normal = 0;
 int eiger_highvoltage = 0;
 int eiger_theo_highvoltage = 0;
 int eiger_iodelay = 0;
-int eiger_photonenergy = 0;
 int eiger_dynamicrange = 0;
 int eiger_parallelmode = 0;
 int eiger_overflow32 = 0;
@@ -682,17 +681,17 @@ void allocateDetectorStructureMemory() {
         ("modules from 0x%x to 0x%x\n", detectorModules, detectorModules));
     LOG(logDEBUG1, ("chans from 0x%x to 0x%x\n", detectorChans, detectorChans));
     LOG(logDEBUG1, ("dacs from 0x%x to 0x%x\n", detectorDacs, detectorDacs));
-    (detectorModules)->dacs = detectorDacs;
-    (detectorModules)->chanregs = detectorChans;
-    (detectorModules)->ndac = NDAC;
-    (detectorModules)->nchip = NCHIP;
-    (detectorModules)->nchan = NCHIP * NCHAN;
-    (detectorModules)->reg = 0;
-    (detectorModules)->iodelay = 0;
-    (detectorModules)->tau = 0;
-    (detectorModules)->eV[0] = 0;
-    (detectorModules)->eV[1] = 0;
-    (detectorModules)->eV[2] = 0;
+    detectorModules->dacs = detectorDacs;
+    detectorModules->chanregs = detectorChans;
+    detectorModules->ndac = NDAC;
+    detectorModules->nchip = NCHIP;
+    detectorModules->nchan = NCHIP * NCHAN;
+    detectorModules->reg = 0;
+    detectorModules->iodelay = 0;
+    detectorModules->tau = 0;
+    detectorModules->eV[0] = -1;
+    detectorModules->eV[1] = -1;
+    detectorModules->eV[2] = -1;
     thisSettings = UNINITIALIZED;
 
     // if trimval requested, should return -1 to acknowledge unknown
@@ -732,9 +731,8 @@ void setupDetector() {
     getSubExpTime(DEFAULT_SUBFRAME_DEADTIME);
     setPeriod(DEFAULT_PERIOD);
     setNumTriggers(DEFAULT_NUM_CYCLES);
-    eiger_dynamicrange = DEFAULT_DYNAMIC_RANGE;
     setDynamicRange(DEFAULT_DYNAMIC_RANGE);
-    eiger_photonenergy = DEFAULT_PHOTON_ENERGY;
+    detectorModules->eV[0] = DEFAULT_PHOTON_ENERGY;
     setParallelMode(DEFAULT_PARALLEL_MODE);
     setOverFlowMode(DEFAULT_READOUT_OVERFLOW32_MODE);
     setReadoutSpeed(DEFAULT_CLK_SPEED);
@@ -1127,25 +1125,43 @@ int64_t getMeasuredSubPeriod() {
 
 /* parameters - channel, module, settings */
 
+void getModule(sls_detector_module* myMod) {
+    // serial number
+    myMod->serialnumber = detectorModules->serialnumber;
+    // reg (settings)
+    myMod->reg = detectorModules->reg;
+    // iodelay
+    myMod->iodelay = setIODelay(-1);
+    // tau
+    myMod->tau = (int) getCurrentTau();
+    // eV
+    myMod->eV[0] = detectorModules->eV[0];
+    // dacs
+    for (int idac = 0; idac < (detectorModules->ndac); idac++) {
+        *((myMod->dacs) + idac) = *((detectorModules->dacs) + idac);
+    }
+    // trimbits
+    for (int ichan = 0; ichan < (detectorModules->nchan); ichan++) {
+        *((myMod->chanregs) + ichan) = *((detectorModules->chanregs) + ichan);
+    }
+}
+
 int setModule(sls_detector_module myMod, char *mess) {
 
     LOG(logINFO, ("Setting module with settings %d\n", myMod.reg));
 
+    if (((myMod.nchan) > (detectorModules->nchan)) || ((myMod.ndac) > (detectorModules->ndac))) {
+        strcpy(mess, "Could not set module as the number of channels or dacs do not match to the one in the detector server\n");
+        LOG(logERROR, (mess));
+        return FAIL;
+    }
+
+    // serial number (pointless)
+    detectorModules->serialnumber = myMod.serialnumber;
+
     // settings
     setSettings((enum detectorSettings)myMod.reg);
 
-    // copy module locally (module number, serial number
-    // dacs (pointless), trimbit values(if needed)
-    if (detectorModules) {
-        if (copyModule(detectorModules, &myMod) == FAIL) {
-            sprintf(mess, "Could not copy module\n");
-            LOG(logERROR, (mess));
-            setSettings(UNDEFINED);
-            LOG(logERROR, ("Settings has been changed to undefined\n"));
-            return FAIL;
-        }
-    }
-
     // iodelay
     if (setIODelay(myMod.iodelay) != myMod.iodelay) {
         sprintf(mess, "Could not set module. Could not set iodelay %d\n",
@@ -1178,60 +1194,15 @@ int setModule(sls_detector_module myMod, char *mess) {
         }
     }
 
-#ifndef VIRTUAL
     // trimbits
+#ifndef VIRTUAL
     if (myMod.nchan == 0) {
         LOG(logINFO, ("Setting module without trimbits\n"));
     } else {
         LOG(logINFO, ("Setting module with trimbits\n"));
-        // includ gap pixels
-        unsigned int tt[263680];
-        int ip = 0, ich = 0;
-        for (int iy = 0; iy < 256; ++iy) {
-            for (int ichip = 0; ichip < 4; ++ichip) {
-                for (int ix = 0; ix < 256; ++ix) {
-                    tt[ip++] = myMod.chanregs[ich++];
-                }
-                if (ichip < 3) {
-                    tt[ip++] = 0;
-                    tt[ip++] = 0;
-                }
-            }
-        }
-
-        // set trimbits
-        sharedMemory_lockLocalLink();
-
-        // if quad, set M8 and PROGRAM manually
-        if (!Feb_Control_SetChipSignalsToTrimQuad(1)) {
-            sharedMemory_unlockLocalLink();
+        if (setTrimbits(myMod.chanregs, mess) == FAIL) {
             return FAIL;
         }
-
-        if (!Feb_Control_SetTrimbits(tt, top)) {
-            sprintf(mess, "Could not set module. Could not set trimbits\n");
-            LOG(logERROR, (mess));
-            setSettings(UNDEFINED);
-            LOG(logERROR, ("Settings has been changed to undefined (random "
-                           "trim file)\n"));
-
-            // if quad, reset M8 and PROGRAM manually
-            if (!Feb_Control_SetChipSignalsToTrimQuad(0)) {
-                sharedMemory_unlockLocalLink();
-                return FAIL;
-            }
-
-            sharedMemory_unlockLocalLink();
-            return FAIL;
-        }
-
-        // if quad, reset M8 and PROGRAM manually
-        if (!Feb_Control_SetChipSignalsToTrimQuad(0)) {
-            sharedMemory_unlockLocalLink();
-            return FAIL;
-        }
-
-        sharedMemory_unlockLocalLink();
     }
 #endif
 
@@ -1284,6 +1255,7 @@ enum detectorSettings setSettings(enum detectorSettings sett) {
         return thisSettings;
     }
     thisSettings = sett;
+    detectorModules->reg = sett;
     LOG(logINFO, ("Settings: %d\n", thisSettings));
     return thisSettings;
 }
@@ -1294,13 +1266,14 @@ enum detectorSettings getSettings() { return thisSettings; }
 
 int getThresholdEnergy() {
     LOG(logDEBUG1, ("Getting Threshold energy\n"));
-    return eiger_photonenergy;
+    return detectorModules->eV[0];
 }
 
 int setThresholdEnergy(int ev) {
     LOG(logINFO, ("Setting threshold energy:%d\n", ev));
-    if (ev >= 0)
-        eiger_photonenergy = ev;
+    if (ev >= 0) {
+        detectorModules->eV[0] = ev;
+    }
     return getThresholdEnergy();
 }
 
@@ -1910,6 +1883,7 @@ int setIODelay(int val) {
 #else
         eiger_iodelay = val;
 #endif
+        detectorModules->iodelay = val;
     }
     return eiger_iodelay;
 }
@@ -2153,7 +2127,6 @@ void setDefaultSettingsTau_in_nsec(int t) {
 int64_t getCurrentTau() {
     if (!getRateCorrectionEnable()) {
         eiger_tau_ns = 0;
-        return 0;
     } else {
 #ifndef VIRTUAL
         sharedMemory_lockLocalLink();
@@ -2162,8 +2135,9 @@ int64_t getCurrentTau() {
 #else
         eiger_tau_ns = eiger_virtual_ratetable_tau_in_ns;
 #endif
-        return eiger_tau_ns;
     }
+    detectorModules->tau = eiger_tau_ns;
+    return eiger_tau_ns;
 }
 
 void setExternalGating(int enable[]) {
@@ -2184,6 +2158,68 @@ void setExternalGating(int enable[]) {
     enable[1] = eiger_extgatingpolarity;
 }
 
+int setTrimbits(int* chanregs, char* mess) {
+    LOG(logINFO, ("Setting module with trimbits\n"));
+#ifndef VIRTUAL
+    // include gap pixels
+    unsigned int tt[263680];
+    int ip = 0, ich = 0;
+    for (int iy = 0; iy < 256; ++iy) {
+        for (int ichip = 0; ichip < 4; ++ichip) {
+            for (int ix = 0; ix < 256; ++ix) {
+                tt[ip++] = chanregs[ich++];
+            }
+            if (ichip < 3) {
+                tt[ip++] = 0;
+                tt[ip++] = 0;
+            }
+        }
+    }
+
+    // set trimbits
+    sharedMemory_lockLocalLink();
+
+    // if quad, set M8 and PROGRAM manually
+    if (!Feb_Control_SetChipSignalsToTrimQuad(1)) {
+        sharedMemory_unlockLocalLink();
+        return FAIL;
+    }
+
+    if (!Feb_Control_SetTrimbits(tt, top)) {
+        sprintf(mess, "Could not set module. Could not set trimbits\n");
+        LOG(logERROR, (mess));
+        setSettings(UNDEFINED);
+        LOG(logERROR, ("Settings has been changed to undefined (random "
+                        "trim file)\n"));
+
+        // if quad, reset M8 and PROGRAM manually
+        if (!Feb_Control_SetChipSignalsToTrimQuad(0)) {
+            sharedMemory_unlockLocalLink();
+            return FAIL;
+        }
+
+        sharedMemory_unlockLocalLink();
+        return FAIL;
+    }
+
+    // if quad, reset M8 and PROGRAM manually
+    if (!Feb_Control_SetChipSignalsToTrimQuad(0)) {
+        sharedMemory_unlockLocalLink();
+        return FAIL;
+    }
+
+    sharedMemory_unlockLocalLink();
+
+    // copying trimbits locally (if tirmbit value > -1)
+    for (int ichan = 0; ichan < (detectorModules->nchan); ichan++) {
+        if (*(chanregs + ichan) >= 0)
+            *((detectorModules->chanregs) + ichan) = *(chanregs + ichan);
+    }
+#endif
+    return OK;
+}
+
+
 int setAllTrimbits(int val) {
     LOG(logINFO, ("Setting all trimbits to %d\n", val));
 #ifndef VIRTUAL
@@ -2195,6 +2231,8 @@ int setAllTrimbits(int val) {
     }
     sharedMemory_unlockLocalLink();
 #endif
+
+    // copying trimbits locally
     if (detectorModules) {
         for (int ichan = 0; ichan < (detectorModules->nchan); ichan++) {
             *((detectorModules->chanregs) + ichan) = val;
@@ -2473,9 +2511,9 @@ void *start_timer(void *arg) {
     int maxPacketsPerFrame = (tgEnable ? 4 : 16) * dr;
     int npixelsx = 256 * 2 * bytesPerPixel;
     int databytes = 256 * 256 * 2 * bytesPerPixel;
-    int row = eiger_virtual_detPos[0];
-    int colLeft = top ? eiger_virtual_detPos[1] : eiger_virtual_detPos[1] + 1;
-    int colRight = top ? eiger_virtual_detPos[1] + 1 : eiger_virtual_detPos[1];
+    int row = eiger_virtual_detPos[Y];
+    int colLeft = top ? eiger_virtual_detPos[X] : eiger_virtual_detPos[X] + 1;
+    int colRight = top ? eiger_virtual_detPos[X] + 1 : eiger_virtual_detPos[X];
 
     int readNRows = getReadNRows();
     if (readNRows == -1) {
@@ -2548,8 +2586,20 @@ void *start_timer(void *arg) {
                 }
                 break;
             case 16:
+// to debug multi module geometry (row, column) in virtual servers (all pixels
+// in a module set to particular value)
+#ifdef TEST_MOD_GEOMETRY
+                if ((i % 1024) < 512) {
+                    *((uint16_t *)(imageData + i * sizeof(uint16_t))) =
+                        top ? (portno % 1900) : ((portno % 1900) + 1);
+                } else {
+                    *((uint16_t *)(imageData + i * sizeof(uint16_t))) =
+                        top ? ((portno % 1900) + 1) : (portno % 1900);
+                }
+#else
                 *((uint16_t *)(imageData + i * sizeof(uint16_t))) =
                     eiger_virtual_test_mode ? 0xFFE : (uint16_t)pixelVal;
+#endif
                 break;
             case 32:
                 *((uint32_t *)(imageData + i * sizeof(uint32_t))) =
@@ -2894,53 +2944,6 @@ void readFrame(int *ret, char *mess) {
 
 /* common */
 
-int copyModule(sls_detector_module *destMod, sls_detector_module *srcMod) {
-    LOG(logDEBUG1, ("Copying module\n"));
-
-    if (srcMod->serialnumber >= 0) {
-
-        destMod->serialnumber = srcMod->serialnumber;
-    }
-    // no trimbit feature
-    if (destMod->nchan && ((srcMod->nchan) > (destMod->nchan))) {
-        LOG(logINFO, ("Number of channels of source is larger than number of "
-                      "channels of destination\n"));
-        return FAIL;
-    }
-    if ((srcMod->ndac) > (destMod->ndac)) {
-        LOG(logINFO, ("Number of dacs of source is larger than number of dacs "
-                      "of destination\n"));
-        return FAIL;
-    }
-
-    LOG(logDEBUG1, ("DACs: src %d, dest %d\n", srcMod->ndac, destMod->ndac));
-    LOG(logDEBUG1, ("Chans: src %d, dest %d\n", srcMod->nchan, destMod->nchan));
-    if (srcMod->reg >= 0)
-        destMod->reg = srcMod->reg;
-    if (srcMod->iodelay >= 0)
-        destMod->iodelay = srcMod->iodelay;
-    if (srcMod->tau >= 0)
-        destMod->tau = srcMod->tau;
-    if (srcMod->eV[0] >= 0)
-        destMod->eV[0] = srcMod->eV[0];
-    LOG(logDEBUG1, ("Copying register %x (%x)\n", destMod->reg, srcMod->reg));
-
-    if (destMod->nchan != 0 && srcMod->nchan != 0) {
-        for (int ichan = 0; ichan < (srcMod->nchan); ichan++) {
-            if (*((srcMod->chanregs) + ichan) >= 0)
-                *((destMod->chanregs) + ichan) = *((srcMod->chanregs) + ichan);
-        }
-    } else
-        LOG(logINFO, ("Not Copying trimbits\n"));
-
-    for (int idac = 0; idac < (srcMod->ndac); idac++) {
-        if (*((srcMod->dacs) + idac) >= 0) {
-            *((destMod->dacs) + idac) = *((srcMod->dacs) + idac);
-        }
-    }
-    return OK;
-}
-
 int calculateDataBytes() {
     if (send_to_ten_gig)
         return eiger_dynamicrange * ONE_GIGA_CONSTANT * TEN_GIGA_BUFFER_SIZE;

slsDetectorServers/gotthard2DetectorServer/slsDetectorFunctionList.c

@@ -1917,7 +1917,7 @@ int setDetectorPosition(int pos[]) {
     int ret = OK;
 
     // row
-    value = detPos[X];
+    value = detPos[Y];
     bus_w(addr, (bus_r(addr) & ~COORD_ROW_MSK) |
                     ((value << COORD_ROW_OFST) & COORD_ROW_MSK));
     valueRead = ((bus_r(addr) & COORD_ROW_MSK) >> COORD_ROW_OFST);
@@ -1928,7 +1928,7 @@ int setDetectorPosition(int pos[]) {
     }
 
     // col
-    value = detPos[Y];
+    value = detPos[X];
     bus_w(addr, (bus_r(addr) & ~COORD_COL_MSK) |
                     ((value << COORD_COL_OFST) & COORD_COL_MSK));
     valueRead = ((bus_r(addr) & COORD_COL_MSK) >> COORD_COL_OFST);
@@ -1939,7 +1939,8 @@ int setDetectorPosition(int pos[]) {
     }
 
     if (ret == OK) {
-        LOG(logINFO, ("\tPosition set to [%d, %d]\n", detPos[X], detPos[Y]));
+        LOG(logINFO,
+            ("\tPosition set to [%d, %d] #(col, row)\n", detPos[X], detPos[Y]));
     }
 
     return ret;
@@ -2296,6 +2297,24 @@ int setClockDivider(enum CLKINDEX ind, int val) {
             setPhase(i, oldPhases[i], 1);
         }
     }
+
+    // update system frequency and time settings that depend on it
+    if (ind == SYSTEM_C0) {
+        LOG(logINFO, ("\tUpdating time settings (sys freq change)\n"));
+        int64_t exptime = getExpTime();
+        int64_t period = getPeriod();
+        int64_t delayAfterTrigger = getDelayAfterTrigger();
+        int64_t burstPeriod = getBurstPeriod();
+        
+        systemFrequency = ((double)getVCOFrequency(SYSTEM_C0) /
+                        (double)clkDivider[SYSTEM_C0]);
+
+        setExpTime(exptime);
+        setPeriod(period);
+        setDelayAfterTrigger(delayAfterTrigger);
+        setBurstPeriod(burstPeriod);
+        LOG(logINFO, ("\tDone updating time settings\n"));
+    }
     return OK;
 }
 
@@ -2797,13 +2816,10 @@ void setTimingSource(enum timingSourceType value) {
     case TIMING_INTERNAL:
         LOG(logINFO, ("Setting timing source to internal\n"));
         bus_w(addr, (bus_r(addr) & ~CONTROL_TIMING_SOURCE_EXT_MSK));
-        systemFrequency = INT_SYSTEM_C0_FREQUENCY;
         break;
     case TIMING_EXTERNAL:
         LOG(logINFO, ("Setting timing source to exernal\n"));
         bus_w(addr, (bus_r(addr) | CONTROL_TIMING_SOURCE_EXT_MSK));
-        systemFrequency = ((double)getVCOFrequency(SYSTEM_C0) /
-                           (double)clkDivider[SYSTEM_C0]);
         break;
     default:
         LOG(logERROR, ("Unknown timing source %d\n", value));
@@ -3095,8 +3111,8 @@ void *start_timer(void *arg) {
             header->frameNumber = virtual_currentFrameNumber;
             header->packetNumber = 0;
             header->modId = virtual_moduleid;
-            header->row = detPos[X];
-            header->column = detPos[Y];
+            header->row = detPos[Y];
+            header->column = detPos[X];
             // fill data
             memcpy(packetData + sizeof(sls_detector_header), imageData,
                    datasize);

slsDetectorServers/gotthardDetectorServer/slsDetectorFunctionList.c

@@ -432,6 +432,8 @@ void setupDetector() {
     // roi, gbit readout
     rois.xmin = -1;
     rois.xmax = -1;
+    rois.ymin = -1;
+    rois.ymax = -1;
     setROI(rois); // set adcsyncreg, daqreg, chipofinterestreg, cleanfifos,
     setGbitReadout();
 
@@ -857,8 +859,10 @@ int setROI(ROI arg) {
         LOG(logINFO, ("Clearing ROI\n"));
         rois.xmin = -1;
         rois.xmax = -1;
+        rois.ymin = -1;
+        rois.ymax = -1;
     } else {
-        LOG(logINFO, ("Setting ROI:(%d, %d)\n", arg.xmin, arg.xmax));
+        LOG(logINFO, ("Setting ROI:(%d, %d, %d, %d)\n", arg.xmin, arg.xmax, arg.ymin, arg.ymax));
         // validation
         // xmin divisible by 256 and less than 1280
         if (((arg.xmin % NCHAN_PER_ADC) != 0) ||
@@ -892,7 +896,7 @@ ROI getROI() {
     if (rois.xmin == -1) {
         LOG(logINFO, ("\tROI: None\n"));
     } else {
-        LOG(logINFO, ("ROI: (%d,%d)\n", rois.xmin, rois.xmax));
+        LOG(logINFO, ("ROI: (%d,%d,%d,%d)\n", rois.xmin, rois.xmax, rois.ymin, rois.ymax));
     }
     return rois;
 }

slsDetectorServers/jungfrauDetectorServer/CMakeLists.txt

@@ -25,7 +25,7 @@ target_include_directories(jungfrauDetectorServer_virtual
 )
 
 target_compile_definitions(jungfrauDetectorServer_virtual
-    PUBLIC JUNGFRAUD VIRTUAL STOP_SERVER
+    PUBLIC JUNGFRAUD VIRTUAL STOP_SERVER #TEST_MOD_GEOMETRY
 )
 
 target_link_libraries(jungfrauDetectorServer_virtual

slsDetectorServers/jungfrauDetectorServer/slsDetectorFunctionList.c

@@ -21,7 +21,7 @@
 #include <pthread.h>
 #include <time.h>
 #endif
-
+extern int portno;
 // Global variable from slsDetectorServer_funcs
 extern int debugflag;
 extern int updateFlag;
@@ -1621,6 +1621,7 @@ int configureMAC() {
 
 int setDetectorPosition(int pos[]) {
     int ret = OK;
+    // row, col
     uint32_t innerPos[2] = {pos[X], pos[Y]};
     uint32_t outerPos[2] = {pos[X], pos[Y]};
     int selInterface = getPrimaryInterface();
@@ -1630,15 +1631,16 @@ int setDetectorPosition(int pos[]) {
             ("Setting detector position: 1 Interface %s \n(%d, %d)\n",
              (selInterface ? "Inner" : "Outer"), innerPos[X], innerPos[Y]));
     } else {
-        ++outerPos[X];
+        // top has row incremented by 1
+        ++innerPos[Y];
         LOG(logDEBUG, ("Setting detector position: 2 Interfaces \n"
                        "  inner top(%d, %d), outer bottom(%d, %d)\n",
                        innerPos[X], innerPos[Y], outerPos[X], outerPos[Y]));
     }
-    detPos[0] = innerPos[0];
-    detPos[1] = innerPos[1];
-    detPos[2] = outerPos[0];
-    detPos[3] = outerPos[1];
+    detPos[0] = innerPos[X];
+    detPos[1] = innerPos[Y];
+    detPos[2] = outerPos[X];
+    detPos[3] = outerPos[Y];
 
     // row
     // outer
@@ -1676,8 +1678,8 @@ int setDetectorPosition(int pos[]) {
 
     if (ret == OK) {
         if (getNumberofUDPInterfaces() == 1) {
-            LOG(logINFOBLUE,
-                ("Position set to [%d, %d]\n", innerPos[X], innerPos[Y]));
+            LOG(logINFOBLUE, ("Position set to [%d, %d] #(col, row)\n",
+                              innerPos[X], innerPos[Y]));
         } else {
             LOG(logINFOBLUE, (" Inner (top) position set to [%d, %d]\n",
                               innerPos[X], innerPos[Y]));
@@ -2531,8 +2533,16 @@ void *start_timer(void *arg) {
             if (i > 0 && i % pixelsPerPacket == 0) {
                 ++pixelVal;
             }
+// to debug multi module geometry (row, column) in virtual servers (all pixels
+// in a module set to particular value)
+#ifdef TEST_MOD_GEOMETRY
+            *((uint16_t *)(imageData + i * sizeof(uint16_t))) =
+                portno % 1900 + (i >= npixels / 2 ? 1 : 0);
+#else
             *((uint16_t *)(imageData + i * sizeof(uint16_t))) =
                 virtual_image_test_mode ? 0x0FFE : (uint16_t)pixelVal;
+
+#endif
         }
     }
 
@@ -2557,6 +2567,10 @@ void *start_timer(void *arg) {
 
             int srcOffset = 0;
             int srcOffset2 = DATA_BYTES / 2;
+            int row0 = (numInterfaces == 1 ? detPos[1] : detPos[3]);
+            int col0 = (numInterfaces == 1 ? detPos[0] : detPos[2]);
+            int row1 = detPos[1];
+            int col1 = detPos[0];
             // loop packet (128 packets)
             for (int i = 0; i != maxPacketsPerFrame; ++i) {
 
@@ -2576,8 +2590,8 @@ void *start_timer(void *arg) {
                     header->frameNumber = frameNr + iframes;
                     header->packetNumber = pnum;
                     header->modId = 0;
-                    header->row = detPos[0];
-                    header->column = detPos[1];
+                    header->row = row0;
+                    header->column = col0;
 
                     // fill data
                     memcpy(packetData + sizeof(sls_detector_header),
@@ -2603,8 +2617,8 @@ void *start_timer(void *arg) {
                     header->frameNumber = frameNr + iframes;
                     header->packetNumber = pnum;
                     header->modId = 0;
-                    header->row = detPos[2];
-                    header->column = detPos[3];
+                    header->row = row1;
+                    header->column = col1;
 
                     // fill data
                     memcpy(packetData2 + sizeof(sls_detector_header),

slsDetectorServers/moenchDetectorServer/slsDetectorFunctionList.c

@@ -1731,8 +1731,8 @@ void *start_timer(void *arg) {
             header->frameNumber = frameNr + iframes;
             header->packetNumber = i;
             header->modId = 0;
-            header->row = detPos[X];
-            header->column = detPos[Y];
+            header->row = detPos[Y];
+            header->column = detPos[X];
 
             // fill data
             memcpy(packetData + sizeof(sls_detector_header),

slsDetectorServers/mythen3DetectorServer/mythen3.c

@@ -10,20 +10,6 @@
 
 #include <string.h>
 
-/*
-// Common C/C++ structure to handle pattern data
-typedef struct __attribute__((packed)) {
-    uint64_t word[MAX_PATTERN_LENGTH];
-    uint64_t ioctrl;
-    uint32_t limits[2];
-    // loop0 start, loop0 stop .. loop2 start, loop2 stop
-    uint32_t loop[6];
-    uint32_t nloop[3];
-    uint32_t wait[3];
-    uint64_t waittime[3];
-} patternParameters;
-*/
-
 int chipStatusRegister = 0;
 
 int setBit(int ibit, int patword) { return patword |= (1 << ibit); }
@@ -32,44 +18,6 @@ int clearBit(int ibit, int patword) { return patword &= ~(1 << ibit); }
 
 int getChipStatusRegister() { return chipStatusRegister; }
 
-int gainCapsToCsr(int caps) {
-    // Translates bit representation
-    int csr = 0;
-    if (!(caps & M3_C10pre))
-        csr |= 1 << _CSR_C10pre;
-    if (caps & M3_C15sh)
-        csr |= 1 << CSR_C15sh;
-    if (caps & M3_C30sh)
-        csr |= 1 << CSR_C30sh;
-    if (caps & M3_C50sh)
-        csr |= 1 << CSR_C50sh;
-    if (caps & M3_C225ACsh)
-        csr |= 1 << CSR_C225ACsh;
-    if (!(caps & M3_C15pre))
-        csr |= 1 << _CSR_C15pre;
-
-    return csr;
-}
-
-int csrToGainCaps(int csr) {
-    // Translates bit representation
-    int caps = 0;
-    if (!(csr & (1 << _CSR_C10pre)))
-        caps |= M3_C10pre;
-    if (csr & (1 << CSR_C15sh))
-        caps |= M3_C15sh;
-    if (csr & (1 << CSR_C30sh))
-        caps |= M3_C30sh;
-    if (csr & (1 << CSR_C50sh))
-        caps |= M3_C50sh;
-    if (csr & (1 << CSR_C225ACsh))
-        caps |= M3_C225ACsh;
-    if (!(csr & (1 << _CSR_C15pre)))
-        caps |= M3_C15pre;
-
-    return caps;
-}
-
 patternParameters *setChipStatusRegisterPattern(int csr) {
     int iaddr = 0;
     int nbits = 18;
@@ -149,54 +97,116 @@ patternParameters *setChipStatusRegisterPattern(int csr) {
     return pat;
 }
 
-patternParameters *setInterpolation(int mask) {
-    int csr;
-    if (mask)
-        csr = chipStatusRegister | (1 << CSR_interp);
-    else
-        csr = chipStatusRegister & ~(1 << CSR_interp);
+int getGainCaps() {
+    int csr = chipStatusRegister;
+    // Translates bit representation
+    int caps = 0;
+    if (!(csr & (1 << _CSR_C10pre)))
+        caps |= M3_C10pre;
+    if (csr & (1 << CSR_C15sh))
+        caps |= M3_C15sh;
+    if (csr & (1 << CSR_C30sh))
+        caps |= M3_C30sh;
+    if (csr & (1 << CSR_C50sh))
+        caps |= M3_C50sh;
+    if (csr & (1 << CSR_C225ACsh))
+        caps |= M3_C225ACsh;
+    if (!(csr & (1 << _CSR_C15pre)))
+        caps |= M3_C15pre;
 
-    return setChipStatusRegisterPattern(csr);
+    return caps;
 }
 
-patternParameters *setPumpProbe(int mask) {
-    int csr;
-    if (mask)
-        csr = chipStatusRegister | (1 << CSR_pumprobe);
-    else
-        csr = chipStatusRegister & ~(1 << CSR_pumprobe);
+int M3SetGainCaps(int caps) {
+    int csr = chipStatusRegister & ~GAIN_MASK;
 
-    return setChipStatusRegisterPattern(csr);
+    // Translates bit representation
+    if (!(caps & M3_C10pre))
+        csr |= 1 << _CSR_C10pre;
+    if (caps & M3_C15sh)
+        csr |= 1 << CSR_C15sh;
+    if (caps & M3_C30sh)
+        csr |= 1 << CSR_C30sh;
+    if (caps & M3_C50sh)
+        csr |= 1 << CSR_C50sh;
+    if (caps & M3_C225ACsh)
+        csr |= 1 << CSR_C225ACsh;
+    if (!(caps & M3_C15pre))
+        csr |= 1 << _CSR_C15pre;
+
+    return csr;
 }
-patternParameters *setDigitalPulsing(int mask) {
 
-    int csr;
-    if (mask)
-        csr = chipStatusRegister | (1 << CSR_dpulse);
-    else
-        csr = chipStatusRegister & ~(1 << CSR_dpulse);
-
-    return setChipStatusRegisterPattern(csr);
+int getInterpolation() {
+    return ((chipStatusRegister & CSR_interp_MSK) >> CSR_interp);
 }
-patternParameters *setAnalogPulsing(int mask) {
 
-    int csr;
-    if (mask)
-        csr = chipStatusRegister | (1 << CSR_apulse);
+int M3SetInterpolation(int enable) {
+    int csr = 0;
+    if (enable)
+        csr = chipStatusRegister | CSR_interp_MSK;
     else
-        csr = chipStatusRegister & ~(1 << CSR_apulse);
-
-    return setChipStatusRegisterPattern(csr);
+        csr = chipStatusRegister & ~CSR_interp_MSK;
+    return csr;
 }
-patternParameters *setNegativePolarity(int mask) {
 
-    int csr;
-    if (mask)
-        csr = chipStatusRegister | (1 << CSR_invpol);
+int getPumpProbe() {
+    return ((chipStatusRegister & CSR_pumprobe_MSK) >> CSR_pumprobe);
+}
+
+int M3SetPumpProbe(int enable) {
+    LOG(logINFO, ("%s Pump Probe\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = 0;
+    if (enable)
+        csr = chipStatusRegister | CSR_pumprobe_MSK;
     else
-        csr = chipStatusRegister & ~(1 << CSR_invpol);
+        csr = chipStatusRegister & ~CSR_pumprobe_MSK;
+    return csr;
+}
 
-    return setChipStatusRegisterPattern(csr);
+int getDigitalPulsing() {
+    return ((chipStatusRegister & CSR_dpulse_MSK) >> CSR_dpulse);
+}
+
+int M3SetDigitalPulsing(int enable) {
+    LOG(logINFO,
+        ("%s Digital Pulsing\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = 0;
+    if (enable)
+        csr = chipStatusRegister | CSR_dpulse_MSK;
+    else
+        csr = chipStatusRegister & ~CSR_dpulse_MSK;
+    return csr;
+}
+
+int getAnalogPulsing() {
+    return ((chipStatusRegister & CSR_apulse_MSK) >> CSR_apulse);
+}
+
+int M3SetAnalogPulsing(int enable) {
+    LOG(logINFO,
+        ("%s Analog Pulsing\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = 0;
+    if (enable)
+        csr = chipStatusRegister | CSR_apulse_MSK;
+    else
+        csr = chipStatusRegister & ~CSR_apulse_MSK;
+    return csr;
+}
+
+int getNegativePolarity() {
+    return ((chipStatusRegister & CSR_invpol_MSK) >> CSR_invpol);
+}
+
+int M3SetNegativePolarity(int enable) {
+    LOG(logINFO,
+        ("%s Negative Polarity\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = 0;
+    if (enable)
+        csr = chipStatusRegister | CSR_invpol_MSK;
+    else
+        csr = chipStatusRegister & ~CSR_invpol_MSK;
+    return csr;
 }
 
 patternParameters *setChannelRegisterChip(int ichip, int *mask, int *trimbits) {

slsDetectorServers/mythen3DetectorServer/mythen3.h

@@ -49,6 +49,12 @@
        // shaper)
 #define _CSR_C15pre 14 // negative polarity
 
+#define CSR_invpol_MSK   (0x1 << CSR_invpol)
+#define CSR_dpulse_MSK   (0x1 << CSR_dpulse)
+#define CSR_interp_MSK   (0x1 << CSR_interp)
+#define CSR_pumprobe_MSK (0x1 << CSR_pumprobe)
+#define CSR_apulse_MSK   (0x1 << CSR_apulse)
+
 #define CSR_default (1 << _CSR_C10pre) | (1 << CSR_C30sh)
 
 #define GAIN_MASK                                                              \
@@ -58,15 +64,20 @@
 int setBit(int ibit, int patword);
 int clearBit(int ibit, int patword);
 int getChipStatusRegister();
-int gainCapsToCsr(int caps);
-int csrToGainCaps(int csr);
 
 patternParameters *setChipStatusRegisterPattern(int csr);
 patternParameters *setChannelRegisterChip(int ichip, int *mask, int *trimbits);
-patternParameters *setInterpolation(int mask);
-patternParameters *setPumpProbe(int mask);
-patternParameters *setDigitalPulsing(int mask);
-patternParameters *setAnalogPulsing(int mask);
-patternParameters *setNegativePolarity(int mask);
+int getGainCaps();
+int M3SetGainCaps(int caps);
+int getInterpolation();
+int M3SetInterpolation(int enable);
+int getPumpProbe();
+int M3SetPumpProbe(int enable);
+int getDigitalPulsing();
+int M3SetDigitalPulsing(int enable);
+int getAnalogPulsing();
+int M3SetAnalogPulsing(int enable);
+int getNegativePolarity();
+int M3SetNegativePolarity(int enable);
 
 #endif

slsDetectorServers/mythen3DetectorServer/slsDetectorFunctionList.c

@@ -68,6 +68,7 @@ int64_t exptimeReg[NCOUNTERS] = {0, 0, 0};
 int64_t gateDelayReg[NCOUNTERS] = {0, 0, 0};
 int vthEnabledVals[NCOUNTERS] = {0, 0, 0};
 int detID = 0;
+int counterMask = 0x0;
 
 int isInitCheckDone() { return initCheckDone; }
 
@@ -421,7 +422,7 @@ void allocateDetectorStructureMemory() {
         detectorDacs[idac] = 0;
     }
 
-    // trimbits start at 0 //TODO: restart server will not have 0 always
+    // trimbits start at 0 
     for (int ichan = 0; ichan < (detectorModules->nchan); ichan++) {
         *((detectorModules->chanregs) + ichan) = 0;
     }
@@ -474,17 +475,19 @@ void setupDetector() {
 
     // defaults
     setHighVoltage(DEFAULT_HIGH_VOLTAGE);
-    resetToDefaultDacs(0);
     setASICDefaults();
     setADIFDefaults();
 
+    // enable all counters before setting dacs (vthx)
+    setCounterMask(MAX_COUNTER_MSK);
+    resetToDefaultDacs(0);
+
     // set trigger flow for m3 (for all timing modes)
     bus_w(FLOW_TRIGGER_REG, bus_r(FLOW_TRIGGER_REG) | FLOW_TRIGGER_MSK);
 
     // dynamic range
     setDynamicRange(DEFAULT_DYNAMIC_RANGE);
-    // enable all counters
-    setCounterMask(MAX_COUNTER_MSK);
+
 
     // Initialization of acquistion parameters
     setNumFrames(DEFAULT_NUM_FRAMES);
@@ -596,8 +599,8 @@ int resetToDefaultDacs(int hardReset) {
             }
         }
 
-        // set to defualt
-        setDAC((enum DACINDEX)i, value, 0);
+        // set to default (last arg to ensure counter check)
+        setDAC((enum DACINDEX)i, value, 0, 1);
         if (detectorDacs[i] != value) {
             LOG(logERROR, ("Setting dac %d failed, wrote %d, read %d\n", i,
                            value, detectorDacs[i]));
@@ -1087,12 +1090,44 @@ int64_t getGateDelay(int gateIndex) {
     return retval / (1E-9 * getFrequency(SYSTEM_C0));
 }
 
+void updateVthAndCounterMask() {
+    LOG(logINFO, ("\tUpdating Vth and countermask\n"));
+    int interpolation = getInterpolation();
+    int pumpProbe = getPumpProbe();
+
+    if (interpolation) {
+        // enable all counters
+        setCounterMaskWithUpdateFlag(MAX_COUNTER_MSK, 0);
+        // disable vth3
+        setVthDac(2, 0);
+    } else {
+        // previous counter values
+        setCounterMaskWithUpdateFlag(counterMask, 0);        
+    }
+    if (pumpProbe) {
+        // enable only vth2
+        setVthDac(0, 0);
+        setVthDac(1, 1);
+        setVthDac(2, 0);
+    } else {
+        setVthDac(0, (counterMask & (1 << 0)));
+        setVthDac(1, (counterMask & (1 << 1)));
+    }
+    if (!interpolation && !pumpProbe) {
+        setVthDac(2, (counterMask & (1 << 2)));
+    }
+}
+
 void setCounterMask(uint32_t arg) {
+    setCounterMaskWithUpdateFlag(arg, 1);
+    updateVthAndCounterMask();
+}
+
+void setCounterMaskWithUpdateFlag(uint32_t arg, int updateMaskFlag) {
     if (arg == 0 || arg > MAX_COUNTER_MSK) {
         return;
     }
-    uint32_t oldmask = getCounterMask();
-    LOG(logINFO, ("Setting counter mask to  0x%x\n", arg));
+    LOG(logINFO, ("\tSetting counter mask to  0x%x\n", arg));
     uint32_t addr = CONFIG_REG;
     bus_w(addr, bus_r(addr) & ~CONFIG_COUNTERS_ENA_MSK);
     bus_w(addr, bus_r(addr) | ((arg << CONFIG_COUNTERS_ENA_OFST) &
@@ -1108,19 +1143,8 @@ void setCounterMask(uint32_t arg) {
         setGateDelay(i, ns);
     }
 
-    LOG(logINFO, ("\tUpdating Vth dacs\n"));
-    enum DACINDEX vthdacs[] = {M_VTH1, M_VTH2, M_VTH3};
-    for (int i = 0; i < NCOUNTERS; ++i) {
-        // if change in enable
-        if ((arg & (1 << i)) ^ (oldmask & (1 << i))) {
-            // disable, disable value
-            int value = DEFAULT_COUNTER_DISABLED_VTH_VAL;
-            // enable, set saved values
-            if (arg & (1 << i)) {
-                value = vthEnabledVals[i];
-            }
-            setGeneralDAC(vthdacs[i], value, 0);
-        }
+    if (updateMaskFlag) {
+        counterMask = arg;
     }
 }
 
@@ -1241,7 +1265,8 @@ int64_t getMeasurementTime() {
 int setDACS(int *dacs) {
     for (int i = 0; i < NDAC; ++i) {
         if (dacs[i] != -1) {
-            setDAC((enum DACINDEX)i, dacs[i], 0);
+            // set to default (last arg to ensure counter check)
+            setDAC((enum DACINDEX)i, dacs[i], 0, 1);
             if (dacs[i] != detectorDacs[i]) {
                 // dont complain if that counter was disabled
                 if ((i == M_VTH1 || i == M_VTH2 || i == M_VTH3) &&
@@ -1255,21 +1280,55 @@ int setDACS(int *dacs) {
     return OK;
 }
 
+void getModule(sls_detector_module* myMod) {
+    // serial number
+    myMod->serialnumber = detectorModules->serialnumber;
+    // csr reg
+    myMod->reg = detectorModules->reg;
+    // eV
+    myMod->eV[0] = detectorModules->eV[0];
+    myMod->eV[1] = detectorModules->eV[1];
+    myMod->eV[2] = detectorModules->eV[2];
+    // dacs
+    for (int idac = 0; idac < (detectorModules->ndac); idac++) {
+        *((myMod->dacs) + idac) = *((detectorModules->dacs) + idac);
+    }
+    // trimbits
+    for (int ichan = 0; ichan < (detectorModules->nchan); ichan++) {
+        *((myMod->chanregs) + ichan) = *((detectorModules->chanregs) + ichan);
+    }
+}
+
 int setModule(sls_detector_module myMod, char *mess) {
     LOG(logINFO, ("Setting module\n"));
 
+    if (((myMod.nchan) > (detectorModules->nchan)) || ((myMod.ndac) > (detectorModules->ndac))) {
+        strcpy(mess, "Could not set module as the number of channels or dacs do not match to the one in the detector server\n");
+        LOG(logERROR, (mess));
+        return FAIL;
+    }
+
+    // serial number (pointless)
+    detectorModules->serialnumber = myMod.serialnumber;
+
+    // csr reg
     if (setChipStatusRegister(myMod.reg)) {
         sprintf(mess, "Could not CSR from module\n");
         LOG(logERROR, (mess));
         return FAIL;
     }
 
+    // dacs
     if (setDACS(myMod.dacs)) {
         sprintf(mess, "Could not set dacs\n");
         LOG(logERROR, (mess));
         return FAIL;
     }
 
+    // update vth and countermask
+    updateVthAndCounterMask();
+
+    // threshold energy
     for (int i = 0; i < NCOUNTERS; ++i) {
         if (myMod.eV[i] >= 0) {
             setThresholdEnergy(i, myMod.eV[i]);
@@ -1300,7 +1359,7 @@ int setTrimbits(int *trimbits) {
     uint32_t prevRunClk = clkDivider[SYSTEM_C0];
 
     // set to trimming clock
-    if (setClockDivider(SYSTEM_C0, DEFAULT_TRIMMING_RUN_CLKDIV) == FAIL) {
+    if (setClockDividerWithTimeUpdateOption(SYSTEM_C0, DEFAULT_TRIMMING_RUN_CLKDIV, 0) == FAIL) {
         LOG(logERROR,
             ("Could not start trimming. Could not set to trimming clock\n"));
         return FAIL;
@@ -1333,11 +1392,17 @@ int setTrimbits(int *trimbits) {
     }
 
     // set back to previous clock
-    if (setClockDivider(SYSTEM_C0, prevRunClk) == FAIL) {
+    if (setClockDividerWithTimeUpdateOption(SYSTEM_C0, prevRunClk, 0) == FAIL) {
         LOG(logERROR, ("Could not set to previous run clock after trimming\n"));
         return FAIL;
     }
 
+    // copying trimbits locally (if tirmbit value > -1)
+    for (int ichan = 0; ichan < (detectorModules->nchan); ichan++) {
+        if (*(trimbits + ichan) >= 0)
+            *((detectorModules->chanregs) + ichan) = *(trimbits + ichan);
+    }
+
     return (error ? FAIL : OK);
 }
 
@@ -1403,7 +1468,8 @@ enum detectorSettings setSettings(enum detectorSettings sett) {
     // set special dacs
     const int specialDacs[] = SPECIALDACINDEX;
     for (int i = 0; i < NSPECIALDACS; ++i) {
-        setDAC(specialDacs[i], dacVals[i], 0);
+        // set to default (last arg to ensure counter check)
+        setDAC(specialDacs[i], dacVals[i], 0, 1);
     }
 
     LOG(logINFO, ("Settings: %d\n", thisSettings));
@@ -1411,6 +1477,9 @@ enum detectorSettings setSettings(enum detectorSettings sett) {
 }
 
 void validateSettings() {
+    LOG(logWARNING, ("Not validating dac settings temporarily"));
+    return;
+    
     // if any special dac value is changed individually => undefined
     const int specialDacs[NSPECIALDACS] = SPECIALDACINDEX;
     int *specialDacValues[] = {defaultDacValue_standard, defaultDacValue_fast,
@@ -1460,7 +1529,8 @@ void setThresholdEnergy(int counterIndex, int eV) {
 }
 
 /* parameters - dac, hv */
-void setDAC(enum DACINDEX ind, int val, int mV) {
+// counterEnableCheck false only if setDAC called directly
+void setDAC(enum DACINDEX ind, int val, int mV, int counterEnableCheck) {
     // invalid value
     if (val < 0) {
         return;
@@ -1471,7 +1541,10 @@ void setDAC(enum DACINDEX ind, int val, int mV) {
         return;
     }
 
-    // threshold dacs (remember value, vthreshold: skip disabled)
+    // threshold dacs 
+    // remember value, vthreshold: skip disabled,
+    // others: disable or enable dac if counter mask
+    // setDAC called directly: will set independent of counter enable
     if (ind == M_VTHRESHOLD || ind == M_VTH1 || ind == M_VTH2 ||
         ind == M_VTH3) {
         char *dac_names[] = {DAC_NAMES};
@@ -1482,7 +1555,6 @@ void setDAC(enum DACINDEX ind, int val, int mV) {
                 int dacval = val;
                 // if not disabled value, remember value
                 if (dacval != DEFAULT_COUNTER_DISABLED_VTH_VAL) {
-                    // convert mv to dac
                     if (mV) {
                         if (LTC2620_D_VoltageToDac(val, &dacval) == FAIL) {
                             return;
@@ -1492,9 +1564,16 @@ void setDAC(enum DACINDEX ind, int val, int mV) {
                     LOG(logINFO,
                         ("Remembering %s [%d]\n", dac_names[ind], dacval));
                 }
-                // if vthreshold,skip for disabled counters
-                if ((ind == M_VTHRESHOLD) && (!(counters & (1 << i)))) {
-                    continue;
+                // disabled counter
+                if (!(counters & (1 << i))) {
+                    // skip setting vthx dac (value remembered anyway)
+                    if (ind == M_VTHRESHOLD) {
+                        continue;
+                    }          
+                    // disable dac (except when setting dac directly) 
+                    if (counterEnableCheck) {
+                        val = DEFAULT_COUNTER_DISABLED_VTH_VAL;
+                    }
                 }
                 setGeneralDAC(vthdacs[i], val, mV);
             }
@@ -1535,6 +1614,19 @@ void setGeneralDAC(enum DACINDEX ind, int val, int mV) {
     }
 }
 
+void setVthDac(int index, int enable) {
+    LOG(logINFO, ("\t%s vth%d\n", (enable ? "Enabling" : "Disabing"), index));
+    // enables (from remembered values) or disables vthx
+    enum DACINDEX vthdacs[] = {M_VTH1, M_VTH2, M_VTH3};
+    // disable value
+    int value = DEFAULT_COUNTER_DISABLED_VTH_VAL;
+    // enable, set saved values
+    if (enable) {
+        value = vthEnabledVals[index];
+    }
+    setGeneralDAC(vthdacs[index], value, 0);   
+}
+
 int getDAC(enum DACINDEX ind, int mV) {
     if (ind == M_VTHRESHOLD) {
         int ret = -1, ret1 = -1;
@@ -1603,7 +1695,7 @@ void setTiming(enum timingMode arg) {
 
     int master = 0;
     isMaster(&master);
-    if (master && arg == AUTO_TIMING)
+    if (!master && arg == AUTO_TIMING)
         arg = TRIGGER_EXPOSURE;
 
     uint32_t addr = CONFIG_REG;
@@ -1689,6 +1781,56 @@ void setInitialExtSignals() {
                                         DOUTIF_RISING_LNGTH_PORT_1_MSK));
 }
 
+int setGainCaps(int caps) {
+    LOG(logINFO, ("Setting gain caps to: %u\n", caps));
+    int csr = M3SetGainCaps(caps);
+    return setChipStatusRegister(csr);
+}
+
+int setInterpolation(int enable) {
+    LOG(logINFO,
+        ("%s Interpolation\n", enable == 0 ? "Disabling" : "Enabling"));
+    
+    int csr = M3SetInterpolation(enable);
+    int ret = setChipStatusRegister(csr);
+    if (ret == OK) {
+        updateVthAndCounterMask();  
+    }
+    return ret;
+}
+
+int setPumpProbe(int enable) {
+    LOG(logINFO, ("%s Pump Probe\n", enable == 0 ? "Disabling" : "Enabling"));
+
+    int csr = M3SetPumpProbe(enable);
+    int ret = setChipStatusRegister(csr);
+    if (ret == OK) {
+        updateVthAndCounterMask();
+    }
+    return ret;
+}
+
+int setDigitalPulsing(int enable) {
+    LOG(logINFO,
+        ("%s Digital Pulsing\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = M3SetDigitalPulsing(enable);
+    return setChipStatusRegister(csr);
+}
+
+int setAnalogPulsing(int enable) {
+    LOG(logINFO,
+        ("%s Analog Pulsing\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = M3SetAnalogPulsing(enable);
+    return setChipStatusRegister(csr);
+}
+
+int setNegativePolarity(int enable) {
+    LOG(logINFO,
+        ("%s Negative Polarity\n", enable == 0 ? "Disabling" : "Enabling"));
+    int csr = M3SetNegativePolarity(enable);
+    return setChipStatusRegister(csr);
+}
+
 void setExtSignal(int signalIndex, enum externalSignalFlag mode) {
     LOG(logDEBUG1, ("Setting signal flag[%d] to %d\n", signalIndex, mode));
 
@@ -1892,7 +2034,7 @@ int setDetectorPosition(int pos[]) {
     int ret = OK;
 
     // row
-    value = detPos[X];
+    value = detPos[Y];
     bus_w(addr, (bus_r(addr) & ~COORD_ROW_MSK) |
                     ((value << COORD_ROW_OFST) & COORD_ROW_MSK));
     valueRead = ((bus_r(addr) & COORD_ROW_MSK) >> COORD_ROW_OFST);
@@ -1903,7 +2045,7 @@ int setDetectorPosition(int pos[]) {
     }
 
     // col
-    value = detPos[Y];
+    value = detPos[X];
     bus_w(addr, (bus_r(addr) & ~COORD_COL_MSK) |
                     ((value << COORD_COL_OFST) & COORD_COL_MSK));
     valueRead = ((bus_r(addr) & COORD_COL_MSK) >> COORD_COL_OFST);
@@ -1914,7 +2056,8 @@ int setDetectorPosition(int pos[]) {
     }
 
     if (ret == OK) {
-        LOG(logINFO, ("\tPosition set to [%d, %d]\n", detPos[X], detPos[Y]));
+        LOG(logINFO,
+            ("\tPosition set to [%d, %d] #(col, row)\n", detPos[X], detPos[Y]));
     }
 
     return ret;
@@ -2125,6 +2268,10 @@ int getVCOFrequency(enum CLKINDEX ind) {
 int getMaxClockDivider() { return ALTERA_PLL_C10_GetMaxClockDivider(); }
 
 int setClockDivider(enum CLKINDEX ind, int val) {
+    return setClockDividerWithTimeUpdateOption(ind, val, 1);
+}
+
+int setClockDividerWithTimeUpdateOption(enum CLKINDEX ind, int val, int timeUpdate) {
     if (ind < 0 || ind >= NUM_CLOCKS) {
         LOG(logERROR, ("Unknown clock index %d to set clock divider\n", ind));
         return FAIL;
@@ -2149,6 +2296,32 @@ int setClockDivider(enum CLKINDEX ind, int val) {
     int pllIndex = (int)(ind >= SYSTEM_C0 ? SYSTEM_PLL : READOUT_PLL);
     int clkIndex = (int)(ind >= SYSTEM_C0 ? ind - SYSTEM_C0 : ind);
     ALTERA_PLL_C10_SetOuputClockDivider(pllIndex, clkIndex, val);
+
+    // Update time settings that depend on system frequency
+    // timeUpdate = 0 for setChipRegister/setTrimbits etc
+    // as clk reverted back again
+    if (timeUpdate && ind == SYSTEM_C0) {
+        LOG(logINFO, ("\tUpdating time settings (sys freq change)\n"));
+        int64_t exptime[3] = {0, 0, 0};
+        int64_t gateDelay[3] = {0, 0, 0};
+        for (int i = 0; i != 3; ++i) {
+            exptime[i] = getExpTime(i);
+            gateDelay[i] = getGateDelay(i);
+        }
+        int64_t period = getPeriod();
+        int64_t delayAfterTrigger = getDelayAfterTrigger();
+        
+        clkDivider[ind] = val;
+
+        for (int i = 0; i != 3; ++i) {
+            setExpTime(i, exptime[i]);
+            setGateDelay(i, gateDelay[i]);
+        }
+        setPeriod(period);
+        setDelayAfterTrigger(delayAfterTrigger);
+        LOG(logINFO, ("\tDone updating time settings\n"));
+    }
+
     clkDivider[ind] = val;
     LOG(logINFO, ("\t%s clock (%d) divider set to %d\n", clock_names[ind], ind,
                   clkDivider[ind]));
@@ -2264,6 +2437,7 @@ void *start_timer(void *arg) {
         if (dr == 32 && ncounters > 1) {
             packetsPerFrame = 2;
         }
+        dataSize = imageSize / packetsPerFrame;
     }
     // 1g
     else {
@@ -2285,27 +2459,22 @@ void *start_timer(void *arg) {
     {
         const int nchannels = NCHAN_1_COUNTER * NCHIP * ncounters;
 
-        switch (dr) {
-        /*case 1: // TODO: Not implemented in firmware yet
-                break;*/
-        case 8:
-            for (int i = 0; i < nchannels; ++i) {
+        for (int i = 0; i < nchannels; ++i) {
+            switch (dr) {
+            //case 1: // TODO: Not implemented in firmware yet 
+            // break;
+            case 8:
                 *((uint8_t *)(imageData + i)) = (uint8_t)i;
-            }
-            break;
-        case 16:
-            for (int i = 0; i < nchannels; ++i) {
+                break;
+            case 16:
                 *((uint16_t *)(imageData + i * sizeof(uint16_t))) = (uint16_t)i;
+                break;
+            case 32:
+                *((uint32_t *)(imageData + i * sizeof(uint32_t))) = ((uint32_t)i & 0xFFFFFF); // 24 bit
+                break;
+            default:
+                break;
             }
-            break;
-        case 32:
-            for (int i = 0; i < nchannels; ++i) {
-                *((uint32_t *)(imageData + i * sizeof(uint32_t))) =
-                    ((uint32_t)i & 0xFFFFFF); // 24 bit
-            }
-            break;
-        default:
-            break;
         }
     }
 
@@ -2323,6 +2492,7 @@ void *start_timer(void *arg) {
         clock_gettime(CLOCK_REALTIME, &begin);
         usleep(expUs);
         
+        
         int srcOffset = 0;
         // loop packet
         for (int i = 0; i != packetsPerFrame; ++i) {
@@ -2336,14 +2506,13 @@ void *start_timer(void *arg) {
             header->frameNumber = virtual_currentFrameNumber;
             header->packetNumber = i;
             header->modId = virtual_moduleid;
-            header->row = detPos[X];
-            header->column = detPos[Y];
+            header->row = detPos[Y];
+            header->column = detPos[X];
 
             // fill data
             memcpy(packetData + sizeof(sls_detector_header),
                    imageData + srcOffset, dataSize);
             srcOffset += dataSize;
-
             sendUDPPacket(0, 0, packetData, packetSize);
         }
         LOG(logINFO, ("Sent frame: %d [%lld]\n", frameNr,
@@ -2523,56 +2692,6 @@ u_int32_t runBusy() {
 
 /* common */
 
-int copyModule(sls_detector_module *destMod, sls_detector_module *srcMod) {
-    LOG(logDEBUG1, ("Copying module\n"));
-
-    if (srcMod->serialnumber >= 0) {
-        destMod->serialnumber = srcMod->serialnumber;
-    }
-    // no trimbit feature
-    if (destMod->nchan && ((srcMod->nchan) > (destMod->nchan))) {
-        LOG(logINFO, ("Number of channels of source is larger than number of "
-                      "channels of destination\n"));
-        return FAIL;
-    }
-    if ((srcMod->ndac) > (destMod->ndac)) {
-        LOG(logINFO, ("Number of dacs of source is larger than number of dacs "
-                      "of destination\n"));
-        return FAIL;
-    }
-
-    LOG(logDEBUG1, ("DACs: src %d, dest %d\n", srcMod->ndac, destMod->ndac));
-    LOG(logDEBUG1, ("Chans: src %d, dest %d\n", srcMod->nchan, destMod->nchan));
-    if (srcMod->reg >= 0)
-        destMod->reg = srcMod->reg;
-    /*
-    if (srcMod->iodelay >= 0)
-        destMod->iodelay = srcMod->iodelay;
-    if (srcMod->tau >= 0)
-        destMod->tau = srcMod->tau;
-    */
-    for (int i = 0; i < NCOUNTERS; ++i) {
-        if (srcMod->eV[i] >= 0)
-            destMod->eV[i] = srcMod->eV[i];
-    }
-
-    LOG(logDEBUG1, ("Copying register %x (%x)\n", destMod->reg, srcMod->reg));
-
-    if (destMod->nchan != 0 && srcMod->nchan != 0) {
-        for (int ichan = 0; ichan < (srcMod->nchan); ichan++) {
-            *((destMod->chanregs) + ichan) = *((srcMod->chanregs) + ichan);
-        }
-    } else
-        LOG(logINFO, ("Not Copying trimbits\n"));
-
-    for (int idac = 0; idac < (srcMod->ndac); idac++) {
-        if (*((srcMod->dacs) + idac) >= 0) {
-            *((destMod->dacs) + idac) = *((srcMod->dacs) + idac);
-        }
-    }
-    return OK;
-}
-
 int calculateDataBytes() {
     int numCounters = __builtin_popcount(getCounterMask());
     int dr = 0;
@@ -2593,7 +2712,7 @@ int setChipStatusRegister(int csr) {
     uint32_t prevRunClk = clkDivider[SYSTEM_C0];
 
     // set to trimming clock
-    if (setClockDivider(SYSTEM_C0, DEFAULT_TRIMMING_RUN_CLKDIV) == FAIL) {
+    if (setClockDividerWithTimeUpdateOption(SYSTEM_C0, DEFAULT_TRIMMING_RUN_CLKDIV, 0) == FAIL) {
         LOG(logERROR,
             ("Could not set to trimming clock in order to change CSR\n"));
         return FAIL;
@@ -2615,29 +2734,12 @@ int setChipStatusRegister(int csr) {
     }
 
     // set back to previous clock
-    if (setClockDivider(SYSTEM_C0, prevRunClk) == FAIL) {
+    if (setClockDividerWithTimeUpdateOption(SYSTEM_C0, prevRunClk, 0) == FAIL) {
         LOG(logERROR,
             ("Could not set to previous run clock after changing CSR\n"));
         return FAIL;
     }
 
+    detectorModules->reg = csr;
     return iret;
 }
-
-int setGainCaps(int caps) {
-    LOG(logINFO, ("Setting gain caps to: %u\n", caps));
-    // Update only gain caps, leave the rest of the CSR unchanged
-    int csr = getChipStatusRegister();
-    csr &= ~GAIN_MASK;
-
-    caps = gainCapsToCsr(caps);
-    // caps &= GAIN_MASK;
-    csr |= caps;
-    return setChipStatusRegister(csr);
-}
-
-int getGainCaps() {
-    int csr = getChipStatusRegister();
-    int caps = csrToGainCaps(csr);
-    return caps;
-}

slsDetectorServers/mythen3DetectorServer/slsDetectorServer_defs.h

@@ -105,7 +105,7 @@ enum DACINDEX {
         1220, /* vIpreOut */                                                   \
         2800, /* Vth3 */                                                       \
         2800, /* Vth1 */                                                       \
-        1708, /* vIcin */                                                      \
+        800, /* vIcin */                                                       \
         1800, /* cas */                                                        \
         1100, /* Vrpreamp */                                                   \
         1100, /* Vcal_n */                                                     \

slsDetectorServers/slsDetectorServer/include/common.h

@@ -66,3 +66,5 @@ int moveBinaryFile(char *mess, char *dest, char *src, char *errorPrefix);
 
 int createEmptyFile(char *mess, char *fname, char *errorPrefix);
 int deleteFile(char *mess, char *fname, char *errorPrefix);
+
+int deleteOldServers(char *mess, char *newServerPath, char *errorPrefix);

slsDetectorServers/slsDetectorServer/include/communication_funcs.h

@@ -26,6 +26,7 @@ int receiveData(int file_des, void *buf, int length, intType itype);
 int sendDataOnly(int file_des, void *buf, int length);
 int receiveDataOnly(int file_des, void *buf, int length);
 
+int sendModule(int file_des, sls_detector_module *myMod);
 int receiveModule(int file_des, sls_detector_module *myMod);
 
 /**

slsDetectorServers/slsDetectorServer/include/programViaBlackfin.h

@@ -11,8 +11,8 @@
 #define BLACKFIN_DEFINED
 
 int defineGPIOpins(char *mess);
-int FPGAdontTouchFlash(char *mess);
-int FPGATouchFlash(char *mess);
+int FPGAdontTouchFlash(char *mess, int programming);
+int FPGATouchFlash(char *mess, int programming);
 int resetFPGA(char *mess);
 
 int emptyTempFolder(char *mess);

slsDetectorServers/slsDetectorServer/include/slsDetectorFunctionList.h

@@ -281,6 +281,7 @@ int getNumDigitalSamples();
 #endif
 #ifdef MYTHEN3D
 void setCounterMask(uint32_t arg);
+void setCounterMaskWithUpdateFlag(uint32_t arg, int updateMaskFlag);
 uint32_t getCounterMask();
 void updatePacketizing();
 #endif
@@ -308,9 +309,16 @@ int64_t getMeasurementTime();
 #endif
 
 // parameters - module, settings
+#if defined(MYTHEN3D) || defined(EIGERD)
+void getModule(sls_detector_module* myMod);
+#endif
 #if (!defined(CHIPTESTBOARDD)) && (!defined(MOENCHD)) && (!defined(GOTTHARD2D))
 int setModule(sls_detector_module myMod, char *mess);
 #endif
+
+#ifdef EIGERD
+int setTrimbits(int* chanregs, char* mess);
+#endif
 #ifdef MYTHEN3D
 int setTrimbits(int *trimbits);
 int setAllTrimbits(int val);
@@ -340,9 +348,12 @@ void setThresholdEnergy(int counterIndex, int eV);
 int setOnChipDAC(enum ONCHIP_DACINDEX ind, int chipIndex, int val);
 int getOnChipDAC(enum ONCHIP_DACINDEX ind, int chipIndex);
 #endif
-void setDAC(enum DACINDEX ind, int val, int mV);
 #ifdef MYTHEN3D
+void setDAC(enum DACINDEX ind, int val, int mV, int counterEnableCheck);
 void setGeneralDAC(enum DACINDEX ind, int val, int mV);
+void setVthDac(int index, int enable);
+#else
+void setDAC(enum DACINDEX ind, int val, int mV);
 #endif
 int getDAC(enum DACINDEX ind, int mV);
 int getMaxDacSteps();
@@ -376,7 +387,7 @@ int setHighVoltage(int val);
 // parameters - timing, extsig
 #ifdef EIGERD
 int setMaster(enum MASTERINDEX m);
-int setTop(enum TOPINDEX  t);
+int setTop(enum TOPINDEX t);
 int isTop(int *retval);
 #endif
 #if defined(MYTHEN3D) || defined(EIGERD) || defined(GOTTHARDD) ||              \
@@ -391,9 +402,13 @@ void setTiming(enum timingMode arg);
 enum timingMode getTiming();
 #ifdef MYTHEN3D
 void setInitialExtSignals();
-int setGainCaps(int caps);
-int getGainCaps();
 int setChipStatusRegister(int csr);
+int setGainCaps(int caps);
+int setInterpolation(int enable);
+int setPumpProbe(int enable);
+int setDigitalPulsing(int enable);
+int setAnalogPulsing(int enable);
+int setNegativePolarity(int enable);
 int setDACS(int *dacs);
 #endif
 #if defined(GOTTHARDD) || defined(MYTHEN3D)
@@ -554,6 +569,7 @@ int getFrequency(enum CLKINDEX ind);
 int getVCOFrequency(enum CLKINDEX ind);
 int getMaxClockDivider();
 int setClockDivider(enum CLKINDEX ind, int val);
+int setClockDividerWithTimeUpdateOption(enum CLKINDEX ind, int val, int timeUpdate);
 int getClockDivider(enum CLKINDEX ind);
 
 #elif GOTTHARD2D
@@ -658,9 +674,6 @@ u_int32_t runState(enum TLogLevel lev);
 #endif
 
 // common
-#if defined(EIGERD) || defined(MYTHEN3D)
-int copyModule(sls_detector_module *destMod, sls_detector_module *srcMod);
-#endif
 int calculateDataBytes();
 int getTotalNumberOfChannels();
 #if defined(MOENCHD) || defined(CHIPTESTBOARDD)

slsDetectorServers/slsDetectorServer/include/slsDetectorServer_funcs.h

@@ -132,7 +132,6 @@ int check_version(int);
 int software_trigger(int);
 int led(int);
 int digital_io_delay(int);
-int copy_detector_server(int);
 int reboot_controller(int);
 int set_adc_enable_mask(int);
 int get_adc_enable_mask(int);
@@ -294,3 +293,14 @@ int get_update_mode(int);
 int set_update_mode(int);
 int get_top(int);
 int set_top(int);
+int get_polarity(int);
+int set_polarity(int);
+int get_interpolation(int);
+int set_interpolation(int);
+int get_pump_probe(int);
+int set_pump_probe(int);
+int get_analog_pulsing(int);
+int set_analog_pulsing(int);
+int get_digital_pulsing(int);
+int set_digital_pulsing(int);
+int get_module(int);

slsDetectorServers/slsDetectorServer/src/common.c

@@ -50,6 +50,10 @@ int ConvertToDifferentRange(int inputMin, int inputMax, int outputMin,
 }
 
 int getAbsPath(char *buf, size_t bufSize, char *fname) {
+    if (fname[0] == '/') {
+        strcpy(buf, fname);
+        return OK;
+    }
     // get path of current binary
     char path[bufSize];
     memset(path, 0, bufSize);
@@ -60,10 +64,14 @@ int getAbsPath(char *buf, size_t bufSize, char *fname) {
     }
     path[len] = '\0';
 
-    // get dir path and attach config file name
+    // get dir path and attach file name
     char *dir = dirname(path);
     memset(buf, 0, bufSize);
-    sprintf(buf, "%s/%s", dir, fname);
+    if (!strcmp(dir, "/")) {
+        sprintf(buf, "/%s", fname);
+    } else {
+        sprintf(buf, "%s/%s", dir, fname);
+    }
     LOG(logDEBUG1, ("full path for %s: %s\n", fname, buf));
     return OK;
 }
@@ -466,7 +474,7 @@ int setupDetectorServer(char *mess, char *sname) {
         LOG(logERROR, (mess));
         return FAIL;
     }
-    LOG(logINFO, ("\tSymbolic link created\n"));
+    LOG(logINFO, ("\tSymbolic link created %s -> %s\n", linkname, sname));
 
     // blackfin boards (respawn) (only kept for backwards compatibility)
 #ifndef VIRTUAL
@@ -485,7 +493,7 @@ int setupDetectorServer(char *mess, char *sname) {
 
     // add new link name to /etc/inittab
     if (snprintf(cmd, MAX_STR_LENGTH,
-                 "echo 'ttyS0::respawn:/./%s' >> /etc/inittab",
+                 "echo 'ttyS0::respawn:%s' >> /etc/inittab",
                  linkname) >= MAX_STR_LENGTH) {
         strcpy(mess, "Could not copy detector server. Command "
                      "to add new server for spawning is too long\n");
@@ -670,3 +678,26 @@ int deleteFile(char *mess, char *fname, char *errorPrefix) {
     }
     return OK;
 }
+
+int deleteOldServers(char *mess, char *newServerPath, char *errorPrefix) {
+    LOG(logINFO, ("\tChecking if current binary is to be deleted ...\n"))
+    // get path of current binary (get file name if link)
+    char currentBinary[MAX_STR_LENGTH];
+    memset(currentBinary, 0, MAX_STR_LENGTH);
+    ssize_t len = readlink("/proc/self/exe", currentBinary, MAX_STR_LENGTH - 1);
+    if (len < 0) {
+        LOG(logWARNING, ("(%s): Could not delete old servers. Could not "
+                         "readlink current binary\n",
+                         errorPrefix));
+        return FAIL;
+    }
+    currentBinary[len] = '\0';
+    LOG(logDEBUG1, ("Current binary:%s\n", currentBinary));
+
+    // delete file
+    if (deleteFile(mess, currentBinary, errorPrefix) == FAIL) {
+        LOG(logWARNING, ("(%s). Could not delete old servers\n", errorPrefix));
+        return FAIL;
+    }
+    return OK;
+}

slsDetectorServers/slsDetectorServer/src/communication_funcs.c

@@ -406,66 +406,139 @@ int receiveDataOnly(int file_des, void *buf, int length) {
     return total_received;
 }
 
+int sendModule(int file_des, sls_detector_module *myMod) {
+    enum TLogLevel level = logDEBUG1;
+    LOG(level, ("Sending Module\n"));
+    int ts = 0, n = 0;
+
+    n = sendData(file_des, &(myMod->serialnumber),
+                    sizeof(myMod->serialnumber), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("serialno sent %d bytes. serialno: %d\n", n,
+                myMod->serialnumber));
+    n = sendData(file_des, &(myMod->nchan), sizeof(myMod->nchan), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("nchan sent %d bytes. nchan: %d\n", n, myMod->nchan));
+    n = sendData(file_des, &(myMod->nchip), sizeof(myMod->nchip), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("nchip sent %d bytes. nchip: %d\n", n, myMod->nchip));
+    n = sendData(file_des, &(myMod->ndac), sizeof(myMod->ndac), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("ndac sent %d bytes. ndac: %d\n", n, myMod->ndac));
+    n = sendData(file_des, &(myMod->reg), sizeof(myMod->reg), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("reg sent %d bytes. reg: %d\n", n, myMod->reg));
+    n = sendData(file_des, &(myMod->iodelay), sizeof(myMod->iodelay), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level,
+        ("iodelay sent %d bytes. iodelay: %d\n", n, myMod->iodelay));
+    n = sendData(file_des, &(myMod->tau), sizeof(myMod->tau), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("tau sent %d bytes. tau: %d\n", n, myMod->tau));
+    n = sendData(file_des, myMod->eV, sizeof(myMod->eV), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("eV sent %d bytes. eV: %d\n", n, myMod->eV[0]));
+    // dacs
+    n = sendData(file_des, myMod->dacs, sizeof(int) * (myMod->ndac), INT32);
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("dacs sent %d bytes.\n", n));
+    // channels
+    n = sendData(file_des, myMod->chanregs, sizeof(int) * (myMod->nchan),
+                    INT32);
+    LOG(level, ("chanregs sent %d bytes.\n", n));
+    if (!n) {
+        return -1;
+    }
+    ts += n;
+    LOG(level, ("received module of size %d register %x\n", ts, myMod->reg));
+    return ts;
+}
+
 int receiveModule(int file_des, sls_detector_module *myMod) {
     enum TLogLevel level = logDEBUG1;
     LOG(level, ("Receiving Module\n"));
     int ts = 0, n = 0;
     int nDacs = myMod->ndac;
-#if defined(EIGERD) || defined(MYTHEN3D)
     int nChans = myMod->nchan; // can be zero for no trimbits
     LOG(level, ("nChans: %d\n", nChans));
-#endif
     n = receiveData(file_des, &(myMod->serialnumber),
                     sizeof(myMod->serialnumber), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("serialno received. %d bytes. serialno: %d\n", n,
+    LOG(level, ("serialno received %d bytes. serialno: %d\n", n,
                 myMod->serialnumber));
     n = receiveData(file_des, &(myMod->nchan), sizeof(myMod->nchan), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("nchan received. %d bytes. nchan: %d\n", n, myMod->nchan));
+    LOG(level, ("nchan received %d bytes. nchan: %d\n", n, myMod->nchan));
     n = receiveData(file_des, &(myMod->nchip), sizeof(myMod->nchip), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("nchip received. %d bytes. nchip: %d\n", n, myMod->nchip));
+    LOG(level, ("nchip received %d bytes. nchip: %d\n", n, myMod->nchip));
     n = receiveData(file_des, &(myMod->ndac), sizeof(myMod->ndac), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("ndac received. %d bytes. ndac: %d\n", n, myMod->ndac));
+    LOG(level, ("ndac received %d bytes. ndac: %d\n", n, myMod->ndac));
     n = receiveData(file_des, &(myMod->reg), sizeof(myMod->reg), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("reg received. %d bytes. reg: %d\n", n, myMod->reg));
+    LOG(level, ("reg received %d bytes. reg: %d\n", n, myMod->reg));
     n = receiveData(file_des, &(myMod->iodelay), sizeof(myMod->iodelay), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
     LOG(level,
-        ("iodelay received. %d bytes. iodelay: %d\n", n, myMod->iodelay));
+        ("iodelay received %d bytes. iodelay: %d\n", n, myMod->iodelay));
     n = receiveData(file_des, &(myMod->tau), sizeof(myMod->tau), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("tau received. %d bytes. tau: %d\n", n, myMod->tau));
+    LOG(level, ("tau received %d bytes. tau: %d\n", n, myMod->tau));
     n = receiveData(file_des, myMod->eV, sizeof(myMod->eV), INT32);
     if (!n) {
         return -1;
     }
     ts += n;
-    LOG(level, ("eV received. %d bytes. eV: %d\n", n, myMod->eV[0]));
+    LOG(level, ("eV received %d bytes. eV: %d\n", n, myMod->eV[0]));
     // dacs
     if (nDacs != (myMod->ndac)) {
         LOG(logERROR, ("received wrong number of dacs. "
@@ -478,24 +551,22 @@ int receiveModule(int file_des, sls_detector_module *myMod) {
         return -1;
     }
     ts += n;
-    LOG(level, ("dacs received. %d bytes.\n", n));
+    LOG(level, ("dacs received %d bytes.\n", n));
     // channels
-#if defined(EIGERD) || defined(MYTHEN3D)
     if (((myMod->nchan) != 0) &&      // no trimbits
         (nChans != (myMod->nchan))) { // with trimbits
         LOG(logERROR, ("received wrong number of channels. "
                        "Expected %d, got %d\n",
                        nChans, (myMod->nchan)));
-        return 0;
+        return -1;
     }
     n = receiveData(file_des, myMod->chanregs, sizeof(int) * (myMod->nchan),
                     INT32);
-    LOG(level, ("chanregs received. %d bytes.\n", n));
+    LOG(level, ("chanregs received %d bytes.\n", n));
     if (!n && myMod->nchan != 0) {
         return -1;
     }
     ts += n;
-#endif
     LOG(level, ("received module of size %d register %x\n", ts, myMod->reg));
     return ts;
 }

slsDetectorServers/slsDetectorServer/src/programViaBlackfin.c

@@ -19,8 +19,11 @@
 #define CMD_GPIO9_DEFINE "echo 9 > /sys/class/gpio/export"
 #define CMD_GPIO3_DEFINE "echo 3 > /sys/class/gpio/export"
 
+// N config done
 #define CMD_GPIO7_EXIST "/sys/class/gpio/gpio7"
+// N Config
 #define CMD_GPIO9_EXIST "/sys/class/gpio/gpio9"
+// N CE (access to AS interface)
 #define CMD_GPIO3_EXIST "/sys/class/gpio/gpio3"
 
 #define CMD_GPIO9_DEFINE_OUT "echo out > /sys/class/gpio/gpio9/direction"
@@ -29,8 +32,11 @@
 #define CMD_GPIO9_DEFINE_IN "echo in > /sys/class/gpio/gpio9/direction"
 #define CMD_GPIO3_DEFINE_IN "echo in > /sys/class/gpio/gpio3/direction"
 
+// nConfig
 #define CMD_GPIO9_DONT_TOUCH_FLASH "echo 0 > /sys/class/gpio/gpio9/value"
-#define CMD_GPIO3_DONT_TOUCH_FLASH "echo 0 > /sys/class/gpio/gpio3/value"
+// nCE
+#define CMD_GPIO3_DONT_TOUCH_FLASH "echo 1 > /sys/class/gpio/gpio3/value"
+// CD
 #define CMD_FPGA_PICKED_STATUS  "cat /sys/class/gpio/gpio7/value"
 
 #define CMD_GET_FPGA_FLASH_DRIVE    "awk \'$4== \"\\\"bitfile(spi)\\\"\" {print $1}\' /proc/mtd"
@@ -69,7 +75,7 @@ int defineGPIOpins(char *mess) {
         if (FAIL == validateKernelVersion(KERNEL_DATE_VRSN_3GPIO)) {
             latestKernelVerified = 0;
             LOG(logWARNING,
-                ("Kernel too old to use gpio 3 pins. Update kernel to "
+                ("Kernel too old to use gpio3 (nCE). Update kernel to "
                  "guarantee error-free fpga programming. \n\tNot the end "
                  "of the world. Continuing with current kernel...\n"));
         } else {
@@ -82,35 +88,35 @@ int defineGPIOpins(char *mess) {
     if (access(CMD_GPIO7_EXIST, F_OK) != 0) {
         if (executeCommand(CMD_GPIO7_DEFINE, retvals, logDEBUG1) == FAIL) {
             snprintf(mess, MAX_STR_LENGTH,
-                     "Could not define gpio7 pins for fpga (%s)\n", retvals);
+                     "Could not define gpio7 (CD) for fpga (%s)\n", retvals);
             LOG(logERROR, (mess));
             return FAIL;
         }
-        LOG(logINFO, ("\tgpio7: defined\n"));
+        LOG(logINFO, ("\tgpio7 (CD): defined\n"));
     } else {
-        LOG(logINFO, ("\tgpio7: already defined\n"));
+        LOG(logINFO, ("\tgpio7 (CD): already defined\n"));
     }
 
     // define gpio7 direction
     if (executeCommand(CMD_GPIO7_DEFINE_IN, retvals, logDEBUG1) == FAIL) {
         snprintf(mess, MAX_STR_LENGTH,
-                 "Could not set gpio7 as input for fpga (%s)\n", retvals);
+                 "Could not set gpio7 (CD) as input for fpga (%s)\n", retvals);
         LOG(logERROR, (mess));
         return FAIL;
     }
-    LOG(logINFO, ("\tgpio7: setting intput\n"));
+    LOG(logINFO, ("\tgpio7 (CD): setting intput\n"));
 
     // define gpio9
     if (access(CMD_GPIO9_EXIST, F_OK) != 0) {
         if (executeCommand(CMD_GPIO9_DEFINE, retvals, logDEBUG1) == FAIL) {
             snprintf(mess, MAX_STR_LENGTH,
-                     "Could not define gpio9 pins for fpga (%s)\n", retvals);
+                     "Could not define gpio9 (nConfig) for fpga (%s)\n", retvals);
             LOG(logERROR, (mess));
             return FAIL;
         }
-        LOG(logINFO, ("\tgpio9: defined\n"));
+        LOG(logINFO, ("\tgpio9 (nConfig): defined\n"));
     } else {
-        LOG(logINFO, ("\tgpio9: already defined\n"));
+        LOG(logINFO, ("\tgpio9 (nConfig): already defined\n"));
     }
 
     // define gpio3 (not chip enable)
@@ -118,21 +124,21 @@ int defineGPIOpins(char *mess) {
         if (access(CMD_GPIO3_EXIST, F_OK) != 0) {
             if (executeCommand(CMD_GPIO3_DEFINE, retvals, logDEBUG1) == FAIL) {
                 snprintf(mess, MAX_STR_LENGTH,
-                         "Could not define gpio3 pins for fpga (%s)\n",
+                         "Could not define gpio3 (nCE) for fpga (%s)\n",
                          retvals);
                 LOG(logERROR, (mess));
                 return FAIL;
             }
-            LOG(logINFO, ("\tgpio3: defined\n"));
+            LOG(logINFO, ("\tgpio3 (nCE): defined\n"));
         } else {
-            LOG(logINFO, ("\tgpio3: already defined\n"));
+            LOG(logINFO, ("\tgpio3 (nCE): already defined\n"));
         }
     }
 
     return OK;
 }
 
-int FPGAdontTouchFlash(char *mess) {
+int FPGAdontTouchFlash(char *mess, int programming) {
 #ifdef VIRTUAL
     return OK;
 #endif
@@ -140,51 +146,51 @@ int FPGAdontTouchFlash(char *mess) {
     // define gpio9 as output
     if (executeCommand(CMD_GPIO9_DEFINE_OUT, retvals, logDEBUG1) == FAIL) {
         snprintf(mess, MAX_STR_LENGTH,
-                 "Could not set gpio9 as output for fpga (%s)\n", retvals);
+                 "Could not set gpio9 (nConfig) as output for fpga (%s)\n", retvals);
         LOG(logERROR, (mess));
         return FAIL;
     }
-    LOG(logINFO, ("\tgpio9: setting output\n"));
+    LOG(logINFO, ("\tgpio9 (nConfig): setting output\n"));
 
     // define gpio3 as output
-    if (latestKernelVerified == 1) {
+    if (programming && latestKernelVerified == 1) {
         if (executeCommand(CMD_GPIO3_DEFINE_OUT, retvals, logDEBUG1) == FAIL) {
             snprintf(mess, MAX_STR_LENGTH,
-                     "Could not set gpio3 as output for fpga (%s)\n", retvals);
+                     "Could not set gpio3 (nCE) as output for fpga (%s)\n", retvals);
             LOG(logERROR, (mess));
             return FAIL;
         }
-        LOG(logINFO, ("\tgpio3: setting output\n"));
+        LOG(logINFO, ("\tgpio3 (nCE): setting output\n"));
     }
 
     // tell FPGA to not: gpio9
     if (executeCommand(CMD_GPIO9_DONT_TOUCH_FLASH, retvals, logDEBUG1) ==
         FAIL) {
         snprintf(mess, MAX_STR_LENGTH,
-                 "Could not set gpio9 to not touch flash for fpga (%s)\n",
+                 "Could not set gpio9 (nConfig) to not touch flash for fpga (%s)\n",
                  retvals);
         LOG(logERROR, (mess));
         return FAIL;
     }
-    LOG(logINFO, ("\tgpio9: fpga dont touch flash\n"));
+    LOG(logINFO, ("\tgpio9 (nConfig): fpga dont touch flash (Low)\n"));
 
     // tell FPGA to not: gpio3
-    if (latestKernelVerified == 1) {
+    if (programming && latestKernelVerified == 1) {
         if (executeCommand(CMD_GPIO3_DONT_TOUCH_FLASH, retvals, logDEBUG1) ==
             FAIL) {
             snprintf(mess, MAX_STR_LENGTH,
-                     "Could not set gpio3 to not touch flash for fpga (%s)\n",
+                     "Could not set gpio3 (nCE) to not touch flash for fpga (%s)\n",
                      retvals);
             LOG(logERROR, (mess));
             return FAIL;
         }
-        LOG(logINFO, ("\tgpio3: fpga dont touch flash\n"));
+        LOG(logINFO, ("\tgpio3 (nCE): fpga dont touch flash (High)\n"));
     }
     // usleep(100*1000);
     return OK;
 }
 
-int FPGATouchFlash(char *mess) {
+int FPGATouchFlash(char *mess, int programming) {
 #ifdef VIRTUAL
     return OK;
 #endif
@@ -192,20 +198,20 @@ int FPGATouchFlash(char *mess) {
     // tell FPGA to touch flash to program itself
     if (executeCommand(CMD_GPIO9_DEFINE_IN, retvals, logDEBUG1) == FAIL) {
         snprintf(mess, MAX_STR_LENGTH,
-                 "Could not set gpio9 as input for fpga (%s)\n", retvals);
+                 "Could not set gpio9 (nConfig) as input for fpga (%s)\n", retvals);
         LOG(logERROR, (mess));
         return FAIL;
     }
-    LOG(logINFO, ("\tgpio9: setting input\n"));
+    LOG(logINFO, ("\tgpio9 (nConfig): setting input\n"));
 
-    if (latestKernelVerified == 1) {
+    if (programming && latestKernelVerified == 1) {
         if (executeCommand(CMD_GPIO3_DEFINE_IN, retvals, logDEBUG1) == FAIL) {
             snprintf(mess, MAX_STR_LENGTH,
-                     "Could not set gpio3 as input for fpga (%s)\n", retvals);
+                     "Could not set gpio3 (nCE) as input for fpga (%s)\n", retvals);
             LOG(logERROR, (mess));
             return FAIL;
         }
-        LOG(logINFO, ("\tgpio3: setting input\n"));
+        LOG(logINFO, ("\tgpio3 (nCE): setting input\n"));
     }
     return OK;
 }
@@ -215,10 +221,10 @@ int resetFPGA(char *mess) {
 #ifdef VIRTUAL
     return OK;
 #endif
-    if (FPGAdontTouchFlash(mess) == FAIL) {
+    if (FPGAdontTouchFlash(mess, 0) == FAIL) {
         return FAIL;
     }
-    if (FPGATouchFlash(mess) == FAIL) {
+    if (FPGATouchFlash(mess, 0) == FAIL) {
         return FAIL;
     }
     usleep(CTRL_SRVR_INIT_TIME_US);
@@ -341,7 +347,7 @@ int eraseAndWriteToFlash(char *mess, enum PROGRAM_INDEX index,
     }
 
     if (index == PROGRAM_FPGA) {
-        if (FPGAdontTouchFlash(mess) == FAIL) {
+        if (FPGAdontTouchFlash(mess, 1) == FAIL) {
             return FAIL;
         }
     }
@@ -665,14 +671,14 @@ int writeToFlash(char *mess, ssize_t fsize, FILE *flashfd, FILE *srcfd) {
 
 int waitForFPGAtoTouchFlash(char *mess) {
     // touch and program
-    if (FPGATouchFlash(mess) == FAIL) {
+    if (FPGATouchFlash(mess, 1) == FAIL) {
         return FAIL;
     }
 
 #ifdef VIRTUAL
     return OK;
 #endif
-    LOG(logINFO, ("\tWaiting for FPGA to program from flash\n"));
+    LOG(logINFO, ("\tWaiting for FPGA to program from flash... \n\t[gpio7 (CD) should be High when done]\n"));
     int timeSpent = 0;
 
     int result = 0;
@@ -710,8 +716,8 @@ int waitForFPGAtoTouchFlash(char *mess) {
             LOG(logERROR, (mess));
             return FAIL;
         }
-        LOG(logDEBUG1, ("gpi07 returned %d\n", result));
+        LOG(logDEBUG1, ("gpi07 (CD)returned %d\n", result));
     }
-    LOG(logINFO, ("\tFPGA has picked up the program from flash\n"));
+    LOG(logINFO, ("\tFPGA has picked up the program from flash. gpio7 (CD) is High\n"));
     return OK;
 }

slsDetectorServers/slsDetectorServer/src/slsDetectorServer.c

@@ -39,6 +39,7 @@ extern int masterCommandLine;
 #ifdef EIGERD
 extern int topCommandLine;
 #endif
+int portno = DEFAULT_PORTNO;
 
 void error(char *msg) { perror(msg); }
 
@@ -50,7 +51,6 @@ void sigInterruptHandler(int p) {
 int main(int argc, char *argv[]) {
 
     // options
-    int portno = DEFAULT_PORTNO;
     isControlServer = 1;
     debugflag = 0;
     updateFlag = 0;

slsDetectorServers/slsDetectorServer/src/slsDetectorServer_funcs.c

@@ -62,8 +62,8 @@ int firstUDPDestination = 0;
 
 int configured = FAIL;
 char configureMessage[MAX_STR_LENGTH] = "udp parameters not configured yet";
-int maxydet = -1;
-int detectorId = -1;
+int maxYMods = -1;
+int moduleIndex = -1;
 
 // Local variables
 int (*flist[NUM_DET_FUNCTIONS])(int);
@@ -81,28 +81,14 @@ char scanErrMessage[MAX_STR_LENGTH] = "";
 /* initialization functions */
 
 int updateModeAllowedFunction(int file_des) {
-    enum detFuncs allowedFuncs[] = {F_EXEC_COMMAND,
-                                    F_GET_DETECTOR_TYPE,
-                                    F_GET_FIRMWARE_VERSION,
-                                    F_GET_SERVER_VERSION,
-                                    F_GET_SERIAL_NUMBER,
-                                    F_WRITE_REGISTER,
-                                    F_READ_REGISTER,
-                                    F_LOCK_SERVER,
-                                    F_GET_LAST_CLIENT_IP,
-                                    F_PROGRAM_FPGA,
-                                    F_RESET_FPGA,
-                                    F_CHECK_VERSION,
-                                    F_COPY_DET_SERVER,
-                                    F_REBOOT_CONTROLLER,
-                                    F_GET_KERNEL_VERSION,
-                                    F_UPDATE_KERNEL,
-                                    F_UPDATE_DETECTOR_SERVER,
-                                    F_GET_UPDATE_MODE,
-                                    F_SET_UPDATE_MODE,
-                                    F_GET_NUM_CHANNELS,
-                                    F_GET_NUM_INTERFACES,
-                                    F_ACTIVATE};
+    enum detFuncs allowedFuncs[] = {
+        F_EXEC_COMMAND,           F_GET_DETECTOR_TYPE,  F_GET_FIRMWARE_VERSION,
+        F_GET_SERVER_VERSION,     F_GET_SERIAL_NUMBER,  F_WRITE_REGISTER,
+        F_READ_REGISTER,          F_LOCK_SERVER,        F_GET_LAST_CLIENT_IP,
+        F_PROGRAM_FPGA,           F_RESET_FPGA,         F_CHECK_VERSION,
+        F_REBOOT_CONTROLLER,      F_GET_KERNEL_VERSION, F_UPDATE_KERNEL,
+        F_UPDATE_DETECTOR_SERVER, F_GET_UPDATE_MODE,    F_SET_UPDATE_MODE,
+        F_GET_NUM_CHANNELS,       F_GET_NUM_INTERFACES, F_ACTIVATE};
     size_t allowedFuncsSize = sizeof(allowedFuncs) / sizeof(enum detFuncs);
 
     for (unsigned int i = 0; i < allowedFuncsSize; ++i) {
@@ -130,6 +116,7 @@ void init_detector() {
 #ifdef VIRTUAL
     LOG(logINFO, ("This is a VIRTUAL detector\n"));
     udpDetails[0].srcip = LOCALHOSTIP_INT;
+    udpDetails[0].srcip2 = LOCALHOSTIP_INT;
 #endif
     udpDetails[0].srcport = DEFAULT_UDP_SRC_PORTNO;
     udpDetails[0].dstport = DEFAULT_UDP_DST_PORTNO;
@@ -322,7 +309,6 @@ void function_table() {
     flist[F_SOFTWARE_TRIGGER] = &software_trigger;
     flist[F_LED] = &led;
     flist[F_DIGITAL_IO_DELAY] = &digital_io_delay;
-    flist[F_COPY_DET_SERVER] = &copy_detector_server;
     flist[F_REBOOT_CONTROLLER] = &reboot_controller;
     flist[F_SET_ADC_ENABLE_MASK] = &set_adc_enable_mask;
     flist[F_GET_ADC_ENABLE_MASK] = &get_adc_enable_mask;
@@ -472,6 +458,17 @@ void function_table() {
     flist[F_SET_MASTER] = &set_master;
     flist[F_GET_TOP] = &get_top;
     flist[F_SET_TOP] = &set_top;
+    flist[F_GET_POLARITY] = &get_polarity;
+    flist[F_SET_POLARITY] = &set_polarity;
+    flist[F_GET_INTERPOLATION] = &get_interpolation;
+    flist[F_SET_INTERPOLATION] = &set_interpolation;
+    flist[F_GET_PUMP_PROBE] = &get_pump_probe;
+    flist[F_SET_PUMP_PROBE] = &set_pump_probe;
+    flist[F_GET_ANALOG_PULSING] = &get_analog_pulsing;
+    flist[F_SET_ANALOG_PULSING] = &set_analog_pulsing;
+    flist[F_GET_DIGITAL_PULSING] = &get_digital_pulsing;
+    flist[F_SET_DIGITAL_PULSING] = &set_digital_pulsing;
+    flist[F_GET_MODULE] = &get_module;
 
     // check
     if (NUM_DET_FUNCTIONS >= RECEIVER_ENUM_START) {
@@ -1291,7 +1288,12 @@ int validateAndSetDac(enum dacIndex ind, int val, int mV) {
                 LOG(logERROR, (mess));
             } else
 #endif
+#ifdef MYTHEN3D
+                // ignore counter enable to force vth dac values
+                setDAC(serverDacIndex, val, mV, 0);
+#else
                 setDAC(serverDacIndex, val, mV);
+#endif
             retval = getDAC(serverDacIndex, mV);
         }
 #ifdef EIGERD
@@ -1559,6 +1561,71 @@ int read_register(int file_des) {
     return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
 }
 
+int get_module(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+
+    sls_detector_module module;
+    int *myDac = NULL;
+    int *myChan = NULL;
+    module.dacs = NULL;
+    module.chanregs = NULL;
+
+#if !defined(MYTHEN3D) && !defined(EIGERD)
+    functionNotImplemented();
+#else 
+
+    // allocate to receive module structure
+    // allocate dacs
+    myDac = malloc(getNumberOfDACs() * sizeof(int));
+    // error
+    if (getNumberOfDACs() > 0 && myDac == NULL) {
+        ret = FAIL;
+        sprintf(mess, "Could not allocate dacs\n");
+        LOG(logERROR, (mess));
+    } else
+        module.dacs = myDac;
+
+    // allocate chans
+    if (ret == OK) {
+        myChan = malloc(getTotalNumberOfChannels() * sizeof(int));
+        if (getTotalNumberOfChannels() > 0 && myChan == NULL) {
+            ret = FAIL;
+            sprintf(mess, "Could not allocate chans\n");
+            LOG(logERROR, (mess));
+        } else
+            module.chanregs = myChan;
+    }
+
+    // receive module structure
+    if (ret == OK) {
+        module.nchip = getNumberOfChips();
+        module.nchan = getTotalNumberOfChannels();
+        module.ndac = getNumberOfDACs();
+
+        // ensure nchan is not 0, else trimbits not copied
+        if (module.nchan == 0) {
+            strcpy(mess, "Could not get module as the number of channels to copy is 0\n");
+            LOG(logERROR, (mess));
+            return FAIL;
+        }
+        getModule(&module);
+    }
+#endif
+    Server_SendResult(file_des, INT32, NULL, 0);
+    if (ret != FAIL) {
+        if (sendModule(file_des, &module) < 0) {
+            ret = FAIL;
+        }
+    }
+    if (myChan != NULL)
+        free(myChan);
+    if (myDac != NULL)
+        free(myDac);
+    return ret;
+}
+
+
 int set_module(int file_des) {
     ret = OK;
     memset(mess, 0, sizeof(mess));
@@ -1635,8 +1702,10 @@ int set_module(int file_des) {
 #endif
         LOG(logDEBUG1, ("Settings: %d\n", retval));
     }
-    free(myChan);
-    free(myDac);
+    if (myChan != NULL)
+        free(myChan);
+    if (myDac != NULL)
+        free(myDac);
 #endif
 
     return Server_SendResult(file_des, INT32, NULL, 0);
@@ -2049,7 +2118,7 @@ int set_num_frames(int file_des) {
                 arg > MAX_FRAMES_IN_BURST_MODE) {
                 ret = FAIL;
                 sprintf(mess,
-                        "Could not set number of frames %lld. Must be <= %d in "
+                        "Could not set number of frames %lld. Must be less than equal to %d in "
                         "burst mode.\n",
                         (long long unsigned int)arg, MAX_FRAMES_IN_BURST_MODE);
                 LOG(logERROR, (mess));
@@ -2867,7 +2936,12 @@ int set_roi(int file_des) {
         return printSocketReadError();
     if (receiveData(file_des, &arg.xmax, sizeof(int), INT32) < 0)
         return printSocketReadError();
-    LOG(logDEBUG1, ("Set ROI: [%d, %d]\n", arg.xmin, arg.xmax));
+    if (receiveData(file_des, &arg.ymin, sizeof(int), INT32) < 0)
+        return printSocketReadError();
+    if (receiveData(file_des, &arg.ymax, sizeof(int), INT32) < 0)
+        return printSocketReadError();
+    LOG(logDEBUG1, ("Set ROI: [%d, %d, %d, %d]\n", arg.xmin, arg.xmax, arg.ymin,
+                    arg.ymax));
 
 #ifndef GOTTHARDD
     functionNotImplemented();
@@ -2899,13 +2973,16 @@ int get_roi(int file_des) {
 #else
     // only get
     retval = getROI();
-    LOG(logDEBUG1, ("nRois: (%d, %d)\n", retval.xmin, retval.xmax));
+    LOG(logDEBUG1, ("nRois: (%d, %d, %d, %d)\n", retval.xmin, retval.xmax,
+                    retval.ymin, retval.ymax));
 #endif
 
     Server_SendResult(file_des, INT32, NULL, 0);
     if (ret != FAIL) {
         sendData(file_des, &retval.xmin, sizeof(int), INT32);
         sendData(file_des, &retval.xmax, sizeof(int), INT32);
+        sendData(file_des, &retval.ymin, sizeof(int), INT32);
+        sendData(file_des, &retval.ymax, sizeof(int), INT32);
     }
     return ret;
 }
@@ -4143,65 +4220,15 @@ int digital_io_delay(int file_des) {
     return Server_SendResult(file_des, INT32, NULL, 0);
 }
 
-int copy_detector_server(int file_des) {
-    ret = OK;
-    memset(mess, 0, sizeof(mess));
-    char args[2][MAX_STR_LENGTH];
-    char retvals[MAX_STR_LENGTH] = {0};
-
-    memset(args, 0, sizeof(args));
-    memset(retvals, 0, sizeof(retvals));
-
-    if (receiveData(file_des, args, sizeof(args), OTHER) < 0)
-        return printSocketReadError();
-
-#ifdef VIRTUAL
-    functionNotImplemented();
-#else
-
-    // only set
-    if (Server_VerifyLock() == OK) {
-        char *sname = args[0];
-        char *hostname = args[1];
-        LOG(logINFOBLUE, ("Copying server %s from host %s\n", sname, hostname));
-        char cmd[MAX_STR_LENGTH] = {0};
-
-#ifdef BLACKFIN_DEFINED
-        // check update is allowed  (Non Amd OR AMD + current kernel)
-        ret = allowUpdate(mess, "copy detector server");
-#endif
-
-        // tftp server
-        if (ret == OK) {
-            if (snprintf(cmd, MAX_STR_LENGTH, "tftp %s -r %s -g", hostname,
-                         sname) >= MAX_STR_LENGTH) {
-                ret = FAIL;
-                strcpy(mess, "Could not copy detector server. Command to copy "
-                             "server too long\n");
-                LOG(logERROR, (mess));
-            } else if (executeCommand(cmd, retvals, logDEBUG1) == FAIL) {
-                ret = FAIL;
-                snprintf(mess, MAX_STR_LENGTH,
-                         "Could not copy detector server (tftp). %s\n",
-                         retvals);
-                // LOG(logERROR, (mess)); already printed in executecommand
-            } else {
-                LOG(logINFO, ("\tServer copied\n"));
-            }
-        }
-
-        if (ret == OK) {
-            ret = setupDetectorServer(mess, sname);
-        }
-    }
-#endif
-    return Server_SendResult(file_des, OTHER, retvals, sizeof(retvals));
-}
-
 int reboot_controller(int file_des) {
     ret = OK;
     memset(mess, 0, sizeof(mess));
-#if defined(MYTHEN3D) || defined(GOTTHARD2D)
+
+#ifdef EIGERD
+    functionNotImplemented();
+#elif VIRTUAL
+    ret = GOODBYE;
+#elif defined(MYTHEN3D) || defined(GOTTHARD2D)
     if (getHardwareVersionNumber() == 0) {
         ret = FAIL;
         strcpy(mess, "Old board version, reboot by yourself please!\n");
@@ -4209,20 +4236,11 @@ int reboot_controller(int file_des) {
         Server_SendResult(file_des, INT32, NULL, 0);
         return GOODBYE;
     }
-#ifdef VIRTUAL
-    ret = GOODBYE;
+    ret = REBOOT;
 #else
     ret = REBOOT;
 #endif
-#elif EIGERD
-    functionNotImplemented();
-#else
-#ifdef VIRTUAL
-    ret = GOODBYE;
-#else
-    ret = REBOOT;
-#endif
-#endif
+
     Server_SendResult(file_des, INT32, NULL, 0);
     return ret;
 }
@@ -4751,7 +4769,7 @@ int get_read_n_rows(int file_des) {
 }
 
 void calculate_and_set_position() {
-    if (maxydet == -1 || detectorId == -1) {
+    if (maxYMods == -1 || moduleIndex == -1) {
         ret = FAIL;
         sprintf(mess,
                 "Could not set detector position (did not get multi size).\n");
@@ -4760,21 +4778,20 @@ void calculate_and_set_position() {
     }
 
     // calculating new position
-    int modulePorts[2] = {1, 1};
+    int pos[2] = {0, 0};
+
+    int portGeometry[2] = {1, 1};
     // position does change for eiger and jungfrau (2 interfaces)
 #if defined(EIGERD)
-    modulePorts[1] = getNumberofUDPInterfaces(); // horz
+    portGeometry[X] = getNumberofUDPInterfaces(); // horz
 #elif defined(JUNGFRAUD)
-    modulePorts[0] = getNumberofUDPInterfaces(); // vert
+    portGeometry[Y] = getNumberofUDPInterfaces(); // vert
 #endif
-    int maxy = maxydet * modulePorts[0];
-    int pos[2] = {0, 0};
-    // row
-    pos[0] = (detectorId % maxy);
-    // col for horiz. udp ports
-    pos[1] = (detectorId / maxy) * modulePorts[1];
-
-    LOG(logDEBUG, ("Setting Positions (%d,%d)\n", pos[0], pos[1]));
+    LOG(logDEBUG1, ("moduleIndex:%d maxymods:%d portGeo.x:%d portgeo.y:%d\n",
+                    moduleIndex, maxYMods, portGeometry[X], portGeometry[Y]));
+    pos[Y] = (moduleIndex % maxYMods) * portGeometry[Y];
+    pos[X] = (moduleIndex / maxYMods) * portGeometry[X];
+    LOG(logINFO, ("Setting Positions (%d,%d) #(col, row)\n", pos[X], pos[Y]));
     if (setDetectorPosition(pos) == FAIL) {
         ret = FAIL;
         sprintf(mess, "Could not set detector position.\n");
@@ -4786,8 +4803,8 @@ void calculate_and_set_position() {
         if (udpDetails[0].srcmac == 0) {
             char dmac[MAC_ADDRESS_SIZE];
             memset(dmac, 0, MAC_ADDRESS_SIZE);
-            sprintf(dmac, "aa:bb:cc:dd:%02x:%02x", pos[0] & 0xFF,
-                    pos[1] & 0xFF);
+            sprintf(dmac, "aa:bb:cc:dd:%02x:%02x", pos[X] & 0xFF,
+                    pos[Y] & 0xFF);
             LOG(logINFO, ("Udp source mac address created: %s\n", dmac));
             unsigned char a[6];
             sscanf(dmac, "%hhx:%hhx:%hhx:%hhx:%hhx:%hhx", &a[0], &a[1], &a[2],
@@ -4806,8 +4823,8 @@ void calculate_and_set_position() {
             if (udpDetails[0].srcmac2 == 0) {
                 char dmac2[MAC_ADDRESS_SIZE];
                 memset(dmac2, 0, MAC_ADDRESS_SIZE);
-                sprintf(dmac2, "aa:bb:cc:dd:%02x:%02x", (pos[0] + 1) & 0xFF,
-                        pos[1] & 0xFF);
+                sprintf(dmac2, "aa:bb:cc:dd:%02x:%02x", (pos[X] + 1) & 0xFF,
+                        pos[Y] & 0xFF);
                 LOG(logINFO, ("Udp source mac address2 created: %s\n", dmac2));
                 unsigned char a[6];
                 sscanf(dmac2, "%hhx:%hhx:%hhx:%hhx:%hhx:%hhx", &a[0], &a[1],
@@ -4835,15 +4852,16 @@ int set_detector_position(int file_des) {
 
     if (receiveData(file_des, args, sizeof(args), INT32) < 0)
         return printSocketReadError();
-    LOG(logINFO, ("Setting detector positions: [%u, %u]\n", args[0], args[1]));
+    LOG(logDEBUG, ("Setting detector positions: [maxy:%u, modIndex:%u]\n",
+                   args[0], args[1]));
 
     // only set
     if (Server_VerifyLock() == OK) {
         // if in update mode, there is no need to do this (also detector not set
         // up)
         if (!updateFlag && check_detector_idle("configure mac") == OK) {
-            maxydet = args[0];
-            detectorId = args[1];
+            maxYMods = args[0];
+            moduleIndex = args[1];
             calculate_and_set_position();
         }
     }
@@ -7197,6 +7215,8 @@ int get_receiver_parameters(int file_des) {
 #else
         roi.xmin = -1;
         roi.xmax = -1;
+        roi.ymin = -1;
+        roi.ymax = -1;
 #endif
         n += sendData(file_des, &roi.xmin, sizeof(int), INT32);
         if (n < 0)
@@ -7204,6 +7224,12 @@ int get_receiver_parameters(int file_des) {
         n += sendData(file_des, &roi.xmax, sizeof(int), INT32);
         if (n < 0)
             return printSocketReadError();
+        n += sendData(file_des, &roi.ymin, sizeof(int), INT32);
+        if (n < 0)
+            return printSocketReadError();
+        n += sendData(file_des, &roi.ymax, sizeof(int), INT32);
+        if (n < 0)
+            return printSocketReadError();
     }
 
     // counter mask
@@ -8297,33 +8323,35 @@ int set_gain_caps(int file_des) {
         return printSocketReadError();
     LOG(logDEBUG1, ("Setting gain caps to: %u\n", arg));
 
-    int retval = -1;
-
 #ifndef MYTHEN3D
     functionNotImplemented();
 #else
     if (Server_VerifyLock() == OK) {
-        setGainCaps(arg);
-        retval = getChipStatusRegister(); // TODO! fix
-        LOG(logDEBUG1, ("gain caps retval: %u\n", retval));
+        ret = setGainCaps(arg);
+        if (ret == FAIL) {
+            strcpy(mess, "Could not set gain caps.\n");
+            LOG(logERROR, (mess));
+        } else {
+            int retval = getGainCaps();
+            validate(&ret, mess, (int)arg, (int)retval, "set gain caps", DEC);
+            LOG(logDEBUG1, ("gain caps retval: %u\n", retval));
+        }
     }
 #endif
-    return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
+    return Server_SendResult(file_des, INT32, NULL, 0);
 }
 
 int get_gain_caps(int file_des) {
     ret = OK;
     memset(mess, 0, sizeof(mess));
     int retval = -1;
-    LOG(logINFO, ("Getting gain caps\n"));
+    LOG(logDEBUG1, ("Getting gain caps\n"));
 
 #ifndef MYTHEN3D
     functionNotImplemented();
 #else
-    if (Server_VerifyLock() == OK) {
-        retval = getGainCaps();
-        LOG(logDEBUG1, ("Gain caps: %u\n", retval));
-    }
+    retval = getGainCaps();
+    LOG(logDEBUG1, ("Gain caps: %u\n", retval));
 #endif
     return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
 }
@@ -9221,8 +9249,25 @@ int clear_all_udp_dst(int file_des) {
         if (check_detector_idle("clear all udp destinations") == OK) {
             memset(udpDetails, 0, sizeof(udpDetails));
             // minimum 1 destination in fpga
-            numUdpDestinations = 1;
-            configure_mac();
+            int numdest = 1;
+            // set number of destinations
+#if defined(JUNGFRAUD) || defined(EIGERD)
+            if (setNumberofDestinations(numdest) == FAIL) {
+                ret = FAIL;
+                strcpy(mess, "Could not clear udp destinations to 1 entry.\n");
+                LOG(logERROR, (mess));
+            } else
+#endif
+            {
+                numUdpDestinations = numdest;
+                LOG(logINFOBLUE, ("Number of UDP Destinations: %d\n",
+                                    numUdpDestinations));
+                ret = configureMAC();
+                if (ret == FAIL) {
+                    strcpy(mess, "Could not clear all destinations in the fpga.\n");
+                    LOG(logERROR, (mess));
+                }
+            }
         }
     }
     return Server_SendResult(file_des, INT32, NULL, 0);
@@ -9449,10 +9494,18 @@ int receive_program(int file_des, enum PROGRAM_INDEX index) {
         if (receiveData(file_des, &forceDeleteNormalFile,
                         sizeof(forceDeleteNormalFile), INT32) < 0)
             return printSocketReadError();
-        LOG(logINFO,
-            ("\tForce Delete Normal File flag? %s\n", (forceDeleteNormalFile ? "Y" : "N")));
+        LOG(logINFO, ("\tForce Delete Normal File flag? %s\n",
+                      (forceDeleteNormalFile ? "Y" : "N")));
 #endif
 
+        // ensure the name is not the same as the linked name
+        if (!strcmp(serverName, LINKED_SERVER_NAME)) {
+            ret = FAIL;
+            strcpy(mess, "Server name is the same as the symbolic link. Please "
+                         "use a different server name\n");
+            LOG(logERROR, (mess));
+        }
+
         // in same folder as current process (will also work for virtual then
         // with write permissions)
         {
@@ -9477,7 +9530,8 @@ int receive_program(int file_des, enum PROGRAM_INDEX index) {
                                     checksum, serverName);
 #else
             receive_program_via_blackfin(file_des, index, functionType,
-                                         filesize, checksum, serverName, forceDeleteNormalFile);
+                                         filesize, checksum, serverName,
+                                         forceDeleteNormalFile);
 #endif
         }
 
@@ -9493,7 +9547,8 @@ int receive_program(int file_des, enum PROGRAM_INDEX index) {
 
 void receive_program_via_blackfin(int file_des, enum PROGRAM_INDEX index,
                                   char *functionType, uint64_t filesize,
-                                  char *checksum, char *serverName, int forceDeleteNormalFile) {
+                                  char *checksum, char *serverName,
+                                  int forceDeleteNormalFile) {
 
 #if !defined(JUNGFRAUD) && !defined(CHIPTESTBOARDD) && !defined(MOENCHD) &&    \
     !defined(GOTTHARDD)
@@ -9595,6 +9650,8 @@ void receive_program_via_blackfin(int file_des, enum PROGRAM_INDEX index,
                                    totalsize, forceDeleteNormalFile);
         break;
     case PROGRAM_SERVER:
+        // a fail here is not a show stopper (just for memory)
+        deleteOldServers(mess, serverName, "update detector server");
         ret = moveBinaryFile(mess, serverName, TEMP_PROG_FILE_NAME,
                              "update detector server");
         if (ret == OK) {
@@ -9822,3 +9879,257 @@ int set_top(int file_des) {
 #endif
     return Server_SendResult(file_des, INT32, NULL, 0);
 }
+
+int get_polarity(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    enum polarity retval = POSITIVE;
+
+    LOG(logDEBUG1, ("Getting negativepolarity\n"));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // get only
+    retval = getNegativePolarity() ? NEGATIVE : POSITIVE;
+    LOG(logDEBUG1, ("negative polarity retval: %u\n", retval));
+#endif
+    return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
+}
+
+int set_polarity(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    enum polarity arg = POSITIVE;
+
+    if (receiveData(file_des, &arg, sizeof(arg), INT32) < 0)
+        return printSocketReadError();
+    LOG(logDEBUG1, ("Setting negative polarity: %u\n", (int)arg));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // only set
+    if (Server_VerifyLock() == OK) {
+        switch (arg) {
+        case POSITIVE:
+            ret = setNegativePolarity(0);
+            break;
+        case NEGATIVE:
+            ret = setNegativePolarity(1);
+            break;
+        default:
+            modeNotImplemented("Polarity index", (int)arg);
+            break;
+        }
+        if (ret == FAIL) {
+            sprintf(mess, "Could not set polarity\n");
+            LOG(logERROR, (mess));
+        } else {
+            enum polarity retval = getNegativePolarity() ? NEGATIVE : POSITIVE;
+            validate(&ret, mess, (int)arg, (int)retval, "set polarity", DEC);
+            LOG(logDEBUG1, ("negative polarity retval: %u\n", retval));
+        }
+    }
+#endif
+    return Server_SendResult(file_des, INT32, NULL, 0);
+}
+
+int get_interpolation(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int retval = -1;
+
+    LOG(logDEBUG1, ("Getting interpolation\n"));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // get only
+    retval = getInterpolation();
+    LOG(logDEBUG1, ("interpolation retval: %u\n", retval));
+#endif
+    return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
+}
+
+int set_interpolation(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int arg = 0;
+
+    if (receiveData(file_des, &arg, sizeof(arg), INT32) < 0)
+        return printSocketReadError();
+    LOG(logINFO, ("Setting interpolation: %u\n", arg));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // only set
+    if (Server_VerifyLock() == OK) {
+        if (getPumpProbe() && arg) {
+            ret = FAIL;
+            sprintf(mess, "Could not set interpolation. Disable pump probe mode first.\n");
+            LOG(logERROR, (mess));
+        } else {        
+            ret = setInterpolation(arg);
+            if (ret == FAIL) {
+                if (arg)
+                    sprintf(mess, "Could not set interpolation or enable all "
+                                "counters for it.\n");
+                else
+                    sprintf(mess, "Could not set interpolation\n");
+                LOG(logERROR, (mess));
+            } else {
+                int retval = getInterpolation();
+                validate(&ret, mess, (int)arg, (int)retval, "set interpolation",
+                        DEC);
+                LOG(logDEBUG1, ("interpolation retval: %u\n", retval));
+            }
+        }
+    }
+#endif
+    return Server_SendResult(file_des, INT32, NULL, 0);
+}
+
+int get_pump_probe(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int retval = -1;
+
+    LOG(logDEBUG1, ("Getting pump probe\n"));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // get only
+    retval = getPumpProbe();
+    LOG(logDEBUG1, ("pump probe retval: %u\n", retval));
+#endif
+    return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
+}
+
+int set_pump_probe(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int arg = 0;
+
+    if (receiveData(file_des, &arg, sizeof(arg), INT32) < 0)
+        return printSocketReadError();
+    LOG(logINFO, ("Setting pump probe: %u\n", arg));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // only set
+    if (Server_VerifyLock() == OK) {
+        if (getInterpolation() && arg) {
+            ret = FAIL;
+            sprintf(mess, "Could not set pump probe mode. Disable interpolation mode first.\n");
+            LOG(logERROR, (mess));
+        } else { 
+            ret = setPumpProbe(arg);
+            if (ret == FAIL) {
+                sprintf(mess, "Could not set pump probe\n");
+                LOG(logERROR, (mess));
+            } else {
+                int retval = getPumpProbe();
+                validate(&ret, mess, (int)arg, (int)retval, "set pump probe", DEC);
+                LOG(logDEBUG1, ("pump probe retval: %u\n", retval));
+            }
+        }
+    }
+#endif
+    return Server_SendResult(file_des, INT32, NULL, 0);
+}
+
+int get_analog_pulsing(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int retval = -1;
+
+    LOG(logDEBUG1, ("Getting analog pulsing\n"));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // get only
+    retval = getAnalogPulsing();
+    LOG(logDEBUG1, ("analog pulsing retval: %u\n", retval));
+#endif
+    return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
+}
+
+int set_analog_pulsing(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int arg = 0;
+
+    if (receiveData(file_des, &arg, sizeof(arg), INT32) < 0)
+        return printSocketReadError();
+    LOG(logINFO, ("Setting analog pulsing: %u\n", arg));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // only set
+    if (Server_VerifyLock() == OK) {
+        ret = setAnalogPulsing(arg);
+        if (ret == FAIL) {
+            sprintf(mess, "Could not set analog pulsing\n");
+            LOG(logERROR, (mess));
+        } else {
+            int retval = getAnalogPulsing();
+            validate(&ret, mess, (int)arg, (int)retval, "set analog pulsing",
+                     DEC);
+            LOG(logDEBUG1, ("analog pulsing retval: %u\n", retval));
+        }
+    }
+#endif
+    return Server_SendResult(file_des, INT32, NULL, 0);
+}
+
+int get_digital_pulsing(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int retval = -1;
+
+    LOG(logDEBUG1, ("Getting digital pulsing\n"));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // get only
+    retval = getDigitalPulsing();
+    LOG(logDEBUG1, ("digital pulsing retval: %u\n", retval));
+#endif
+    return Server_SendResult(file_des, INT32, &retval, sizeof(retval));
+}
+
+int set_digital_pulsing(int file_des) {
+    ret = OK;
+    memset(mess, 0, sizeof(mess));
+    int arg = 0;
+
+    if (receiveData(file_des, &arg, sizeof(arg), INT32) < 0)
+        return printSocketReadError();
+    LOG(logINFO, ("Setting digital pulsing: %u\n", arg));
+
+#ifndef MYTHEN3D
+    functionNotImplemented();
+#else
+    // only set
+    if (Server_VerifyLock() == OK) {
+        ret = setDigitalPulsing(arg);
+        if (ret == FAIL) {
+            sprintf(mess, "Could not set digital pulsing\n");
+            LOG(logERROR, (mess));
+        } else {
+            int retval = getDigitalPulsing();
+            validate(&ret, mess, (int)arg, (int)retval, "set digital pulsing",
+                     DEC);
+            LOG(logDEBUG1, ("digital pulsing retval: %u\n", retval));
+        }
+    }
+#endif
+    return Server_SendResult(file_des, INT32, NULL, 0);
+}

slsDetectorSoftware/CMakeLists.txt

@@ -17,6 +17,8 @@ add_library(slsDetectorObject OBJECT
 target_include_directories(slsDetectorObject PUBLIC
     "$<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>"
     "$<INSTALL_INTERFACE:${CMAKE_INSTALL_INCLUDEDIR}>"
+    PRIVATE
+    ${SLS_INTERNAL_RAPIDJSON_DIR}
 )
 
 target_link_libraries(slsDetectorObject 

slsDetectorSoftware/include/sls/Detector.h

@@ -10,10 +10,10 @@
 #include <memory>
 #include <vector>
 
-class detectorData;
 
 namespace sls {
 using ns = std::chrono::nanoseconds;
+class detectorData;
 class DetectorImpl;
 class MacAddr;
 class IpAddr;
@@ -144,7 +144,7 @@ class Detector {
                             defs::detectorSettings settings = defs::STANDARD,
                             bool trimbits = true, Positions pos = {});
 
-    /** [Mythen3] It loads trim files from settingspath */
+    /** [Mythen3] It loads trim files from settingspath. An energy of -1 will pick up values from detector */
     void setThresholdEnergy(std::array<int, 3> threshold_ev,
                             defs::detectorSettings settings = defs::STANDARD,
                             bool trimbits = true, Positions pos = {});
@@ -159,6 +159,10 @@ class Detector {
      * is attached. */
     void loadTrimbits(const std::string &fname, Positions pos = {});
 
+    /** [Eiger][Mythen3] If no extension specified, serial number of each module
+     * is attached. */
+    void saveTrimbits(const std::string &fname, Positions pos = {});
+
     /** [Eiger][Mythen3] -1 if they are all different */
     Result<int> getAllTrimbits(Positions pos = {}) const;
 
@@ -884,7 +888,7 @@ class Detector {
     void setRxLock(bool value, Positions pos = {});
 
     /** Client IP Address that last communicated with the receiver */
-    Result<sls::IpAddr> getRxLastClientIP(Positions pos = {}) const;
+    Result<IpAddr> getRxLastClientIP(Positions pos = {}) const;
 
     /** Get thread ids from the receiver in order of [parent, tcp, listener 0,
      * processor 0, streamer 0, listener 1, processor 1, streamer 1, arping]. If
@@ -899,6 +903,16 @@ class Detector {
      * every minute. Useful in 10G mode. */
     void setRxArping(bool value, Positions pos = {});
 
+    /** at module level */
+    Result<defs::ROI> getIndividualRxROIs(Positions pos) const;
+
+    defs::ROI getRxROI() const;
+    
+    /** only at multi module level without gap pixels */
+    void setRxROI(const defs::ROI value);
+
+    void clearRxROI();
+
     ///@}
 
     /** @name File */
@@ -1472,6 +1486,36 @@ class Detector {
 
     Result<int> getGainCaps(Positions pos = {});
 
+    /** [Mythen3] */
+    Result<defs::polarity> getPolarity(Positions pos = {}) const;
+
+    /** [Mythen3] */
+    void setPolarity(defs::polarity value, Positions pos = {});
+
+    /** [Mythen3] */
+    Result<bool> getInterpolation(Positions pos = {}) const;
+
+    /** [Mythen3] interpolation mode enables all counters and disables vth3. Disabling sets back counter mask and vth3. */
+    void setInterpolation(bool value, Positions pos = {});
+
+    /** [Mythen3] */
+    Result<bool> getPumpProbe(Positions pos = {}) const;
+
+    /** [Mythen3] pump probe mode only enables vth2. Disabling sets back to previous value */
+    void setPumpProbe(bool value, Positions pos = {});
+
+    /** [Mythen3] */
+    Result<bool> getAnalogPulsing(Positions pos = {}) const;
+
+    /** [Mythen3] */
+    void setAnalogPulsing(bool value, Positions pos = {});
+
+    /** [Mythen3] */
+    Result<bool> getDigitalPulsing(Positions pos = {}) const;
+
+    /** [Mythen3] */
+    void setDigitalPulsing(bool value, Positions pos = {});
+
     ///@}
 
     /** @name CTB / Moench Specific */
@@ -1614,12 +1658,11 @@ class Detector {
     /** [CTB] Default is enabled. */
     void setLEDEnable(bool enable, Positions pos = {});
 
-
     void setDacNames(const std::vector<std::string> names);
 
     std::vector<std::string> getDacNames() const;
 
-    defs::dacIndex getDacIndex(const std::string& name);
+    defs::dacIndex getDacIndex(const std::string &name);
     std::string getDacName(defs::dacIndex i);
     ///@}
 
@@ -1766,23 +1809,11 @@ class Detector {
     /** [Jungfrau][CTB][Moench]  Advanced user Function!  */
     void resetFPGA(Positions pos = {});
 
-    /** [[deprecated ("Replaced by updateDetectorServer, which does not require
-     * tftp")]] [Jungfrau][Eiger][Gotthard][CTB][Moench][Mythen3][Gotthard2]
-     * Advanced user Function! \n
-     * Copy detector server fname from tftp folder of hostname to detector. Also
-     * creates a symbolic link to a shorter name (without vx.x.x). Then the
-     * detector controller reboots (except eiger) \n
-     * [Jungfrau][Gotthard][CTB][Moench] Also changes respawn server (to the
-     * link), which is effective after a reboot.
-     */
-    void copyDetectorServer(const std::string &fname,
-                            const std::string &hostname, Positions pos = {});
-
     /** [Jungfrau][Eiger][Ctb][Moench][Mythen3][Gotthard2] Copies detector
      * server via TCP (without tftp).\nMakes a symbolic link with a shorter
      * name (without vx.x.x).\nThen, detector controller reboots (except
-     * Eiger).\n[Jungfrau][Ctb][Moench]Also changes respawn server to the
-     * link, which is effective after a reboot.
+     * Eiger).\n[Jungfrau][Ctb][Moench] Also deletes old server binary and
+     *  changes respawn server to the link, which is effective after a reboot.
      */
     void updateDetectorServer(const std::string &fname, Positions pos = {});
 
@@ -1797,19 +1828,6 @@ class Detector {
      * Function! */
     void rebootController(Positions pos = {});
 
-    /** [[deprecated ("Replaced by overloaded updateDetectorServer, which does
-     * not require tftp and has one less argument")]] Advanced user Function!\n
-     * [Jungfrau][Gotthard][CTB][Moench] Updates the firmware, detector server,
-     * make a soft link and then reboots detector controller. \n
-     * [Mythen3][Gotthard2] Will require a script to start up the shorter named
-     * server link at start up \n sname is name of detector server binary found
-     * on tftp folder of host pc \n hostname is name of pc to tftp from \n fname
-     * is programming file name with full path to it
-     */
-    void updateFirmwareAndServer(const std::string &sname,
-                                 const std::string &hostname,
-                                 const std::string &fname, Positions pos = {});
-
     /**
      * Advanced user Function!\n [Jungfrau][Gotthard][CTB][Moench] Updates the
      * firmware, detector server, make a soft link and then reboots detector
@@ -1905,7 +1923,7 @@ class Detector {
     void setDetectorLock(bool lock, Positions pos = {});
 
     /** Client IP Address that last communicated with the detector */
-    Result<sls::IpAddr> getLastClientIP(Positions pos = {}) const;
+    Result<IpAddr> getLastClientIP(Positions pos = {}) const;
 
     /** Execute a command on the detector server console */
     Result<std::string> executeCommand(const std::string &value,

slsDetectorSoftware/include/sls/detectorData.h

@@ -4,32 +4,19 @@
 #include <cstdint>
 #include <string>
 
+namespace sls {
+
 /**
    @short data structure to hold the detector data after postprocessing
  */
 class detectorData {
   public:
-    /**
-     * Constructor
-     * @param progress progress index
-     * @param fname file name prefix
-     * @param x number of detector channels (1D detector) or dimension in x (2D
-     * detector)
-     * @param y dimension in y (2D detector)
-     * @param d pointer to data in char* format
-     * @param dbytes number of bytes of image pointed to by cval pointer
-     * @param dr dynamic range or bits per pixel
-     * @param fIndex file index
-     * @param complete true if complete image, else missing packets
-     */
-    detectorData(double progress, std::string fname, int x, int y, char *d,
-                 int dbytes, int dr, uint64_t fIndex, bool complete)
-        : progressIndex(progress), fileName(fname), fileIndex(fIndex), nx(x),
-          ny(y), data(d), databytes(dbytes), dynamicRange(dr),
-          completeImage(complete){};
+    detectorData(double progressIndex, std::string fileName, int nx, int ny, char *data, int databytes, int dynamicRange, uint64_t fileIndex, bool completeImage)
+        : progressIndex(progressIndex), fileName(fileName), fileIndex(fileIndex), nx(nx), ny(ny), data(data), databytes(databytes), dynamicRange(dynamicRange), completeImage(completeImage){};
 
+    detectorData(double progressIndex, std::string fileName, int nx, int ny, char *data, int databytes, int dynamicRange, uint64_t fileIndex, bool completeImage, std::array<int, 4> rxRoi)
+        : progressIndex(progressIndex), fileName(fileName), fileIndex(fileIndex), nx(nx), ny(ny), data(data), databytes(databytes), dynamicRange(dynamicRange), completeImage(completeImage), rxRoi(rxRoi) {};
     /**
-     * Destructor
      * data has to be deleted by caller
      */
     ~detectorData(){};
@@ -60,8 +47,11 @@ class detectorData {
     uint64_t fileIndex;
     int nx;
     int ny;
-    char *data;
+    char *data{nullptr};
     int databytes;
     int dynamicRange;
     bool completeImage;
+    std::array<int,4> rxRoi{{-1, -1, -1, -1}};
 };
+
+} // namespace sls

slsDetectorSoftware/src/CmdProxy.h

@@ -11,6 +11,8 @@
 #include <string>
 #include <vector>
 
+namespace sls {
+    
 /** Macro to make an integer command.
  * CMDNAME name of the function that does the command
  * GETFCN Detector function to get
@@ -53,7 +55,7 @@
                 os << args[0] << '\n';                                         \
             }                                                                  \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -75,9 +77,9 @@
                 WrongNumberOfParameters(1);                                    \
             }                                                                  \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
-            throw sls::RuntimeError("cannot put");                             \
+            throw RuntimeError("cannot put");                             \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -102,7 +104,7 @@
             det->SETFCN(args[0], std::vector<int>{det_id});                    \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -128,7 +130,7 @@
             det->SETFCN(val, std::vector<int>{det_id});                        \
             os << ToStringHex(val, 16) << '\n';                                \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -154,7 +156,7 @@
             det->SETFCN(val, std::vector<int>{det_id});                        \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -180,7 +182,7 @@
             det->SETFCN(val, std::vector<int>{det_id});                        \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -206,7 +208,7 @@
             det->SETFCN(val, det_id);                                          \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -232,7 +234,7 @@
             det->SETFCN(val, det_id);                                          \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -252,7 +254,7 @@
             os << OutString(t) << '\n';                                        \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
             if (det_id != -1) {                                                \
-                throw sls::RuntimeError(                                       \
+                throw RuntimeError(                                       \
                     "Cannot execute this at module level");                    \
             }                                                                  \
             if (args.size() != 1) {                                            \
@@ -262,7 +264,7 @@
             det->SETFCN(val);                                                  \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -273,7 +275,7 @@
         std::ostringstream os;                                                 \
         os << cmd << ' ';                                                      \
         if (det_id != -1) {                                                    \
-            throw sls::RuntimeError("Cannot execute this at module level");    \
+            throw RuntimeError("Cannot execute this at module level");    \
         }                                                                      \
         if (action == slsDetectorDefs::HELP_ACTION)                            \
             os << HLPSTR << '\n';                                              \
@@ -291,7 +293,7 @@
             det->SETFCN(val);                                                  \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -317,7 +319,7 @@
             det->SETFCN(INDEX, val, std::vector<int>{det_id});                 \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -345,7 +347,7 @@
                         std::vector<int>{det_id});                             \
             os << args[0] << ' ' << args[1] << '\n';                           \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -356,12 +358,12 @@
         std::ostringstream os;                                                 \
         os << cmd << ' ';                                                      \
         if (det_id != -1) {                                                    \
-            throw sls::RuntimeError("Cannot execute this at module level");    \
+            throw RuntimeError("Cannot execute this at module level");    \
         }                                                                      \
         if (action == slsDetectorDefs::HELP_ACTION)                            \
             os << HLPSTR << '\n';                                              \
         else if (action == slsDetectorDefs::GET_ACTION) {                      \
-            throw sls::RuntimeError("Cannot get");                             \
+            throw RuntimeError("Cannot get");                             \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
             if (!args.empty()) {                                               \
                 WrongNumberOfParameters(0);                                    \
@@ -369,7 +371,7 @@
             det->SETFCN();                                                     \
             os << "successful\n";                                              \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -382,7 +384,7 @@
         if (action == slsDetectorDefs::HELP_ACTION)                            \
             os << HLPSTR << '\n';                                              \
         else if (action == slsDetectorDefs::GET_ACTION) {                      \
-            throw sls::RuntimeError("Cannot get");                             \
+            throw RuntimeError("Cannot get");                             \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
             if (!args.empty()) {                                               \
                 WrongNumberOfParameters(0);                                    \
@@ -390,7 +392,7 @@
             det->SETFCN(std::vector<int>{det_id});                             \
             os << "successful\n";                                              \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -401,12 +403,12 @@
         std::ostringstream os;                                                 \
         os << cmd << ' ';                                                      \
         if (det_id != -1) {                                                    \
-            throw sls::RuntimeError("Cannot execute this at module level");    \
+            throw RuntimeError("Cannot execute this at module level");    \
         }                                                                      \
         if (action == slsDetectorDefs::HELP_ACTION)                            \
             os << HLPSTR << '\n';                                              \
         else if (action == slsDetectorDefs::GET_ACTION) {                      \
-            throw sls::RuntimeError("Cannot get");                             \
+            throw RuntimeError("Cannot get");                             \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
             if (args.size() != 1) {                                            \
                 WrongNumberOfParameters(1);                                    \
@@ -414,7 +416,7 @@
             det->SETFCN(args[0]);                                              \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -427,7 +429,7 @@
         if (action == slsDetectorDefs::HELP_ACTION)                            \
             os << HLPSTR << '\n';                                              \
         else if (action == slsDetectorDefs::GET_ACTION) {                      \
-            throw sls::RuntimeError("Cannot get");                             \
+            throw RuntimeError("Cannot get");                             \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
             if (args.size() != 1) {                                            \
                 WrongNumberOfParameters(1);                                    \
@@ -435,7 +437,7 @@
             det->SETFCN(args[0], std::vector<int>{det_id});                    \
             os << args.front() << '\n';                                        \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -454,9 +456,9 @@
             auto t = det->GETFCN(std::vector<int>{det_id});                    \
             os << OutString(t) << '\n';                                        \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
-            throw sls::RuntimeError("Cannot put");                             \
+            throw RuntimeError("Cannot put");                             \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -473,11 +475,11 @@
                 WrongNumberOfParameters(0);                                    \
             }                                                                  \
             auto t = det->GETFCN();                                            \
-            os << sls::ToString(t) << '\n';                                    \
+            os << ToString(t) << '\n';                                    \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
-            throw sls::RuntimeError("Cannot put");                             \
+            throw RuntimeError("Cannot put");                             \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -496,9 +498,9 @@
             auto t = det->GETFCN(std::vector<int>{det_id});                    \
             os << OutStringHex(t) << '\n';                                     \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
-            throw sls::RuntimeError("Cannot put");                             \
+            throw RuntimeError("Cannot put");                             \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
@@ -516,15 +518,13 @@
             auto t = det->GETFCN(VAL, std::vector<int>{det_id});               \
             os << OutString(t) << APPEND << '\n';                              \
         } else if (action == slsDetectorDefs::PUT_ACTION) {                    \
-            throw sls::RuntimeError("Cannot put");                             \
+            throw RuntimeError("Cannot put");                             \
         } else {                                                               \
-            throw sls::RuntimeError("Unknown action");                         \
+            throw RuntimeError("Unknown action");                         \
         }                                                                      \
         return os.str();                                                       \
     }
 
-namespace sls {
-
 class CmdProxy {
   public:
     explicit CmdProxy(Detector *ptr) : det(ptr) {}
@@ -558,7 +558,7 @@ class CmdProxy {
         return ToStringHex(value, width);
     }
 
-    template <typename V> std::string OutString(const sls::Result<V> &value) {
+    template <typename V> std::string OutString(const Result<V> &value) {
         if (value.equal())
             return ToString(value.front());
         return ToString(value);
@@ -743,7 +743,10 @@ class CmdProxy {
 
         /* Pattern */
         /* Moench */
+
         /* Advanced */
+        {"copydetectorserver", "updatedetectorserver"},
+
         /* Insignificant */
         {"nframes", "framecounter"},
         {"now", "runtime"},
@@ -779,7 +782,7 @@ class CmdProxy {
         {"threshold", &CmdProxy::Threshold},
         {"thresholdnotb", &CmdProxy::Threshold},
         {"settingspath", &CmdProxy::settingspath},
-        {"trimbits", &CmdProxy::trimbits},
+        {"trimbits", &CmdProxy::Trimbits},
         {"trimval", &CmdProxy::trimval},
         {"trimen", &CmdProxy::TrimEnergies},
         {"gappixels", &CmdProxy::GapPixels},
@@ -874,8 +877,8 @@ class CmdProxy {
         {"udp_numdst", &CmdProxy::udp_numdst},
         {"udp_cleardst", &CmdProxy::udp_cleardst},
         {"udp_firstdst", &CmdProxy::udp_firstdst},
-        {"udp_srcip", &CmdProxy::udp_srcip},
-        {"udp_srcip2", &CmdProxy::udp_srcip2},
+        {"udp_srcip", &CmdProxy::UDPSourceIP},
+        {"udp_srcip2", &CmdProxy::UDPSourceIP2},
         {"udp_dstip", &CmdProxy::UDPDestinationIP},
         {"udp_dstip2", &CmdProxy::UDPDestinationIP2},
         {"udp_srcmac", &CmdProxy::udp_srcmac},
@@ -906,6 +909,8 @@ class CmdProxy {
         {"rx_lastclient", &CmdProxy::rx_lastclient},
         {"rx_threads", &CmdProxy::rx_threads},
         {"rx_arping", &CmdProxy::rx_arping},
+        {"rx_roi", &CmdProxy::Rx_ROI},
+        {"rx_clearroi", &CmdProxy::rx_clearroi},
 
         /* File */
         {"fformat", &CmdProxy::fformat},
@@ -961,7 +966,7 @@ class CmdProxy {
 
         /* Gotthard Specific */
         {"roi", &CmdProxy::ROI},
-        {"clearroi", &CmdProxy::ClearROI},
+        {"clearroi", &CmdProxy::clearroi},
         {"exptimel", &CmdProxy::exptimel},
 
         /* Gotthard2 Specific */
@@ -992,6 +997,11 @@ class CmdProxy {
         {"gatedelay2", &CmdProxy::GateDelay},
         {"gatedelay3", &CmdProxy::GateDelay},
         {"gaincaps", &CmdProxy::GainCaps},
+        {"polarity", &CmdProxy::polarity},
+        {"interpolation", &CmdProxy::interpolation},
+        {"pumpprobe", &CmdProxy::pumpprobe},
+        {"apulse", &CmdProxy::apulse},
+        {"dpulse", &CmdProxy::dpulse},
 
         /* CTB/ Moench Specific */
         {"samples", &CmdProxy::Samples},
@@ -1062,7 +1072,6 @@ class CmdProxy {
         /* Advanced */
         {"programfpga", &CmdProxy::ProgramFpga},
         {"resetfpga", &CmdProxy::resetfpga},
-        {"copydetectorserver", &CmdProxy::CopyDetectorServer},
         {"updatedetectorserver", &CmdProxy::UpdateDetectorServer},
         {"updatekernel", &CmdProxy::UpdateKernel},
         {"rebootcontroller", &CmdProxy::rebootcontroller},
@@ -1106,6 +1115,7 @@ class CmdProxy {
     std::string ClientVersion(int action);
     std::string DetectorSize(int action);
     std::string Threshold(int action);
+    std::string Trimbits(int action);
     std::string TrimEnergies(int action);
     std::string GapPixels(int action);
     /* acquisition parameters */
@@ -1138,10 +1148,13 @@ class CmdProxy {
     IpAddr getIpFromAuto();
     UdpDestination getUdpEntry();
     std::string UDPDestinationList(int action);
+    std::string UDPSourceIP(int action);
+    std::string UDPSourceIP2(int action);
     std::string UDPDestinationIP(int action);
     std::string UDPDestinationIP2(int action);
     /* Receiver Config */
     std::string ReceiverHostname(int action);
+    std::string Rx_ROI(int action);
     /* File */
     /* ZMQ Streaming Parameters (Receiver<->Client) */
     std::string ZMQHWM(int action);
@@ -1156,7 +1169,6 @@ class CmdProxy {
     std::string TemperatureEvent(int action);
     /* Gotthard Specific */
     std::string ROI(int action);
-    std::string ClearROI(int action);
     /* Gotthard2 Specific */
     std::string InjectChannel(int action);
     std::string VetoPhoton(int action);
@@ -1189,7 +1201,6 @@ class CmdProxy {
     std::string JsonParameter(int action);
     /* Advanced */
     std::string ProgramFpga(int action);
-    std::string CopyDetectorServer(int action);
     std::string UpdateDetectorServer(int action);
     std::string UpdateKernel(int action);
     std::string UpdateFirmwareAndDetectorServer(int action);
@@ -1243,7 +1254,7 @@ class CmdProxy {
 
     INTEGER_COMMAND_VEC_ID(
         settings, getSettings, setSettings,
-        sls::StringTo<slsDetectorDefs::detectorSettings>,
+        StringTo<slsDetectorDefs::detectorSettings>,
         "[standard, fast, highgain, dynamicgain, lowgain, "
         "mediumgain, veryhighgain, highgain0, "
         "fixgain1, fixgain2, forceswitchg1, forceswitchg2, "
@@ -1265,11 +1276,6 @@ class CmdProxy {
                    "[path]\n\t[Eiger][Mythen3] Directory where settings files "
                    "are loaded from/to.");
 
-    EXECUTE_SET_COMMAND_1ARG(
-        trimbits, loadTrimbits,
-        "[fname]\n\t[Eiger][Mythen3] Loads the trimbit file to detector. If no "
-        "extension specified, serial number of each module is attached.");
-
     INTEGER_COMMAND_VEC_ID(
         trimval, getAllTrimbits, setAllTrimbits, StringTo<int>,
         "[n_trimval]\n\t[Eiger][Mythen3] All trimbits set to this "
@@ -1346,7 +1352,7 @@ class CmdProxy {
 
     INTEGER_COMMAND_VEC_ID(
         timing, getTimingMode, setTimingMode,
-        sls::StringTo<slsDetectorDefs::timingMode>,
+        StringTo<slsDetectorDefs::timingMode>,
         "[auto|trigger|gating|burst_trigger]\n\tTiming Mode of "
         "detector.\n\t[Jungfrau][Gotthard][Ctb][Moench][Gotthard2] "
         "[auto|trigger]\n\t[Mythen3] "
@@ -1593,19 +1599,6 @@ class CmdProxy {
         "out from in a round robin fashion. The entry must not have been "
         "empty. Default: 0");
 
-    INTEGER_COMMAND_VEC_ID(
-        udp_srcip, getSourceUDPIP, setSourceUDPIP, IpAddr,
-        "[x.x.x.x]\n\tIp address of the detector (source) udp "
-        "interface. Must be same subnet as destination udp "
-        "ip.\n\t[Eiger] Set only for 10G. For 1G, detector will "
-        "replace with its own DHCP IP address.");
-
-    INTEGER_COMMAND_VEC_ID(
-        udp_srcip2, getSourceUDPIP2, setSourceUDPIP2, IpAddr,
-        "[x.x.x.x]\n\t[Jungfrau][Gotthard2] Ip address of the detector "
-        "(source) udp interface 2. Must be same subnet as destination udp "
-        "ip2.\n\t [Jungfrau] top half or inner interface\n\t [Gotthard2] veto "
-        "debugging.");
 
     INTEGER_COMMAND_VEC_ID(
         udp_srcmac, getSourceUDPMAC, setSourceUDPMAC, MacAddr,
@@ -1718,7 +1711,7 @@ class CmdProxy {
 
     INTEGER_COMMAND_VEC_ID(
         rx_discardpolicy, getRxFrameDiscardPolicy, setRxFrameDiscardPolicy,
-        sls::StringTo<slsDetectorDefs::frameDiscardPolicy>,
+        StringTo<slsDetectorDefs::frameDiscardPolicy>,
         "[nodiscard (default)|discardempty|discardpartial(fastest)]\n\tFrame "
         "discard policy of receiver. nodiscard does not discard frames, "
         "discardempty discards empty frames, discardpartial discards partial "
@@ -1759,11 +1752,16 @@ class CmdProxy {
                            "the interface it is "
                            "listening to every minute. Useful in 10G mode.");
 
+    EXECUTE_SET_COMMAND_NOID(
+        rx_clearroi, clearRxROI,
+        "Resets Region of interest in receiver. Default is all "
+        "channels/pixels enabled.");
+
     /* File */
 
     INTEGER_COMMAND_VEC_ID(
         fformat, getFileFormat, setFileFormat,
-        sls::StringTo<slsDetectorDefs::fileFormat>,
+        StringTo<slsDetectorDefs::fileFormat>,
         "[binary|hdf5]\n\tFile format of data file. For HDF5, package must be "
         "compiled with HDF5 flags. Default is binary.");
 
@@ -1979,13 +1977,13 @@ class CmdProxy {
 
     INTEGER_COMMAND_VEC_ID(
         gainmode, getGainMode, setGainMode,
-        sls::StringTo<slsDetectorDefs::gainMode>,
+        StringTo<slsDetectorDefs::gainMode>,
         "[dynamicgain|forceswitchg1|forceswitchg2|fixg1|fixg2|fixg0]\n\t["
         "Jungfrau] Gain mode.\n\tCAUTION: Do not use fixg0 without caution, "
         "you can damage the detector!!!");
 
     INTEGER_COMMAND_VEC_ID(filtercells, getNumberOfFilterCells,
-                           setNumberOfFilterCells, sls::StringTo<int>,
+                           setNumberOfFilterCells, StringTo<int>,
                            "[0-12]\n\t[Jungfrau] Set Filter Cell. Only for "
                            "chipv1.1. Advanced user Command");
 
@@ -1994,6 +1992,10 @@ class CmdProxy {
                      "[(optional unit) ns|us|ms|s]\n\t[Gotthard] Exposure time "
                      "left for current frame. ");
 
+    EXECUTE_SET_COMMAND(clearroi, clearROI,
+                        "[Gotthard] Resets Region of interest in detector. All "
+                        "channels enabled. Default is all channels enabled.");
+
     /* Gotthard2 Specific */
     INTEGER_COMMAND_SET_NOID_GET_ID(
         bursts, getNumberOfBursts, setNumberOfBursts, StringTo<int64_t>,
@@ -2017,7 +2019,7 @@ class CmdProxy {
 
     INTEGER_COMMAND_VEC_ID(
         timingsource, getTimingSource, setTimingSource,
-        sls::StringTo<slsDetectorDefs::timingSourceType>,
+        StringTo<slsDetectorDefs::timingSourceType>,
         "[internal|external]\n\t[Gotthard2] Timing source. Internal is crystal "
         "and external is system timing. Default is internal.");
 
@@ -2032,6 +2034,30 @@ class CmdProxy {
         "[n_gates]\n\t[Mythen3] Number of external gates in gating "
         "or trigger_gating mode (external gating).");
 
+    INTEGER_COMMAND_VEC_ID(polarity, getPolarity, setPolarity,
+                           StringTo<defs::polarity>,
+                           "[pos|neg]\n\t[Mythen3] Sets negative or positive "
+                           "polarity. Default is positive");
+
+    INTEGER_COMMAND_VEC_ID(interpolation, getInterpolation, setInterpolation,
+                           StringTo<int>,
+                           "[0, 1]\n\t[Mythen3] Enables or disables "
+                           "interpolation. Default is disabled.  Interpolation mode enables all counters and disables vth3. Disabling sets back counter mask and vth3.");
+
+    INTEGER_COMMAND_VEC_ID(pumpprobe, getPumpProbe, setPumpProbe, StringTo<int>,
+                           "[0, 1]\n\t[Mythen3] Enables or disables pump probe "
+                           "mode. Default is disabled. Pump probe mode only enables vth2. Disabling sets back to previous value.");
+
+    INTEGER_COMMAND_VEC_ID(apulse, getAnalogPulsing, setAnalogPulsing,
+                           StringTo<int>,
+                           "[0, 1]\n\t[Mythen3] Enables or disables analog "
+                           "pulsing. Default is disabled");
+
+    INTEGER_COMMAND_VEC_ID(dpulse, getDigitalPulsing, setDigitalPulsing,
+                           StringTo<int>,
+                           "[0, 1]\n\t[Mythen3] Enables or disables digital "
+                           "pulsing. Default is disabled");
+
     /* CTB/ Moench Specific */
 
     INTEGER_COMMAND_VEC_ID(
@@ -2079,7 +2105,7 @@ class CmdProxy {
 
     INTEGER_COMMAND_VEC_ID(
         romode, getReadoutMode, setReadoutMode,
-        sls::StringTo<slsDetectorDefs::readoutMode>,
+        StringTo<slsDetectorDefs::readoutMode>,
         "[analog|digital|analog_digital]\n\t[CTB] Readout mode. "
         "Default is analog.");
 

slsDetectorSoftware/src/Detector.cpp

@@ -5,9 +5,9 @@
 
 #include "CmdParser.h"
 #include "CmdProxy.h"
+#include "CtbConfig.h"
 #include "DetectorImpl.h"
 #include "Module.h"
-#include "CtbConfig.h"
 #include "sls/Pattern.h"
 #include "sls/container_utils.h"
 #include "sls/file_utils.h"
@@ -26,8 +26,8 @@ void freeSharedMemory(int detectorIndex, int moduleIndex) {
     // single module
     if (moduleIndex >= 0) {
         SharedMemory<sharedModule> moduleShm(detectorIndex, moduleIndex);
-        if (moduleShm.IsExisting()) {
-            moduleShm.RemoveSharedMemory();
+        if (moduleShm.exists()) {
+            moduleShm.removeSharedMemory();
         }
         return;
     }
@@ -36,27 +36,27 @@ void freeSharedMemory(int detectorIndex, int moduleIndex) {
     SharedMemory<sharedDetector> detectorShm(detectorIndex, -1);
     int numDetectors = 0;
 
-    if (detectorShm.IsExisting()) {
-        detectorShm.OpenSharedMemory();
-        numDetectors = detectorShm()->numberOfModules;
-        detectorShm.RemoveSharedMemory();
+    if (detectorShm.exists()) {
+        detectorShm.openSharedMemory(false);
+        numDetectors = detectorShm()->totalNumberOfModules;
+        detectorShm.removeSharedMemory();
     }
 
     for (int i = 0; i < numDetectors; ++i) {
         SharedMemory<sharedModule> moduleShm(detectorIndex, i);
-        moduleShm.RemoveSharedMemory();
+        moduleShm.removeSharedMemory();
     }
 
     // Ctb configuration
     SharedMemory<CtbConfig> ctbShm(detectorIndex, -1, CtbConfig::shm_tag());
-    if (ctbShm.IsExisting())
-        ctbShm.RemoveSharedMemory();
+    if (ctbShm.exists())
+        ctbShm.removeSharedMemory();
 }
 
 using defs = slsDetectorDefs;
 
 Detector::Detector(int shm_id)
-    : pimpl(sls::make_unique<DetectorImpl>(shm_id)) {}
+    : pimpl(make_unique<DetectorImpl>(shm_id)) {}
 
 Detector::~Detector() = default;
 
@@ -66,7 +66,7 @@ void Detector::freeSharedMemory() { pimpl->freeSharedMemory(); }
 void Detector::loadConfig(const std::string &fname) {
     int shm_id = getShmId();
     freeSharedMemory();
-    pimpl = sls::make_unique<DetectorImpl>(shm_id);
+    pimpl = make_unique<DetectorImpl>(shm_id);
     LOG(logINFO) << "Loading configuration file: " << fname;
     loadParameters(fname);
 }
@@ -273,6 +273,10 @@ void Detector::loadTrimbits(const std::string &fname, Positions pos) {
     pimpl->Parallel(&Module::loadTrimbits, pos, fname);
 }
 
+void Detector::saveTrimbits(const std::string &fname, Positions pos) {
+    pimpl->Parallel(&Module::saveTrimbits, pos, fname);
+}
+
 Result<int> Detector::getAllTrimbits(Positions pos) const {
     return pimpl->Parallel(&Module::getAllTrimbits, pos);
 }
@@ -781,24 +785,7 @@ void Detector::startReceiver() { pimpl->Parallel(&Module::startReceiver, {}); }
 void Detector::stopReceiver() { pimpl->Parallel(&Module::stopReceiver, {}); }
 
 void Detector::startDetector(Positions pos) {
-    auto detector_type = getDetectorType(pos).squash();
-    if (detector_type == defs::MYTHEN3 && size() > 1) {
-        std::vector<int> slaves(pos);
-        auto is_master = getMaster(pos);
-        int masterPosition = -1;
-        for (unsigned int i = 0; i < is_master.size(); ++i) {
-            if (is_master[i]) {
-                masterPosition = i;
-                slaves.erase(slaves.begin() + i);
-            }
-        }
-        pimpl->Parallel(&Module::startAcquisition, pos);
-        if (masterPosition != -1) {
-            pimpl->Parallel(&Module::startAcquisition, {masterPosition});
-        }
-    } else {
-        pimpl->Parallel(&Module::startAcquisition, pos);
-    }
+    pimpl->startAcquisition(false, pos);
 }
 
 void Detector::startDetectorReadout() {
@@ -888,7 +875,7 @@ Result<int> Detector::getNumberofUDPInterfaces(Positions pos) const {
 
 void Detector::setNumberofUDPInterfaces(int n, Positions pos) {
     if (getDetectorType().squash() != defs::JUNGFRAU) {
-        throw sls::RuntimeError(
+        throw RuntimeError(
             "Cannot set number of udp interfaces for this detector.");
     }
     // also called by vetostream (for gotthard2)
@@ -968,7 +955,7 @@ Result<UdpDestination> Detector::getDestinationUDPList(const uint32_t entry,
 void Detector::setDestinationUDPList(const UdpDestination dest,
                                      const int module_id) {
     if (module_id == -1 && size() > 1) {
-        throw sls::RuntimeError("Cannot set this parameter at detector level.");
+        throw RuntimeError("Cannot set this parameter at detector level.");
     }
     pimpl->Parallel(&Module::setDestinationUDPList, {module_id}, dest);
 }
@@ -1211,7 +1198,7 @@ void Detector::setRxLock(bool value, Positions pos) {
     pimpl->Parallel(&Module::setReceiverLock, pos, value);
 }
 
-Result<sls::IpAddr> Detector::getRxLastClientIP(Positions pos) const {
+Result<IpAddr> Detector::getRxLastClientIP(Positions pos) const {
     return pimpl->Parallel(&Module::getReceiverLastClientIP, pos);
 }
 
@@ -1228,6 +1215,16 @@ void Detector::setRxArping(bool value, Positions pos) {
     pimpl->Parallel(&Module::setRxArping, pos, value);
 }
 
+Result<defs::ROI> Detector::getIndividualRxROIs(Positions pos) const {
+    return pimpl->Parallel(&Module::getRxROI, pos);
+}
+
+defs::ROI Detector::getRxROI() const { return pimpl->getRxROI(); }
+
+void Detector::setRxROI(const defs::ROI value) { pimpl->setRxROI(value); }
+
+void Detector::clearRxROI() { pimpl->clearRxROI(); }
+
 // File
 
 Result<defs::fileFormat> Detector::getFileFormat(Positions pos) const {
@@ -1251,6 +1248,9 @@ Result<std::string> Detector::getFileNamePrefix(Positions pos) const {
 }
 
 void Detector::setFileNamePrefix(const std::string &fname, Positions pos) {
+    if (fname.find_first_of("/ ") != std::string::npos) {
+        throw RuntimeError("Cannot set file name prefix with '/' or ' '");
+    }
     pimpl->Parallel(&Module::setFileName, pos, fname);
 }
 
@@ -1794,7 +1794,7 @@ Detector::getVetoAlgorithm(const defs::streamingInterface interface,
 void Detector::setVetoAlgorithm(const defs::vetoAlgorithm alg,
                                 defs::streamingInterface interface,
                                 Positions pos) {
-    LOG(logINFOBLUE) << "alg:" << ToString(alg)
+    LOG(logDEBUG) << "alg:" << ToString(alg)
                      << " interface:" << ToString(interface);
     pimpl->Parallel(&Module::setVetoAlgorithm, pos, alg, interface);
 }
@@ -1875,6 +1875,46 @@ Result<int> Detector::getGainCaps(Positions pos) {
     return pimpl->Parallel(&Module::getGainCaps, pos);
 }
 
+Result<defs::polarity> Detector::getPolarity(Positions pos) const {
+    return pimpl->Parallel(&Module::getPolarity, pos);
+}
+
+void Detector::setPolarity(defs::polarity value, Positions pos) {
+    pimpl->Parallel(&Module::setPolarity, pos, value);
+}
+
+Result<bool> Detector::getInterpolation(Positions pos) const {
+    return pimpl->Parallel(&Module::getInterpolation, pos);
+}
+
+void Detector::setInterpolation(bool value, Positions pos) {
+    pimpl->Parallel(&Module::setInterpolation, pos, value);
+}
+
+Result<bool> Detector::getPumpProbe(Positions pos) const {
+    return pimpl->Parallel(&Module::getPumpProbe, pos);
+}
+
+void Detector::setPumpProbe(bool value, Positions pos) {
+    pimpl->Parallel(&Module::setPumpProbe, pos, value);
+}
+
+Result<bool> Detector::getAnalogPulsing(Positions pos) const {
+    return pimpl->Parallel(&Module::getAnalogPulsing, pos);
+}
+
+void Detector::setAnalogPulsing(bool value, Positions pos) {
+    pimpl->Parallel(&Module::setAnalogPulsing, pos, value);
+}
+
+Result<bool> Detector::getDigitalPulsing(Positions pos) const {
+    return pimpl->Parallel(&Module::getDigitalPulsing, pos);
+}
+
+void Detector::setDigitalPulsing(bool value, Positions pos) {
+    pimpl->Parallel(&Module::setDigitalPulsing, pos, value);
+}
+
 // CTB/ Moench Specific
 
 Result<int> Detector::getNumberOfAnalogSamples(Positions pos) const {
@@ -2242,19 +2282,10 @@ void Detector::resetFPGA(Positions pos) {
     pimpl->Parallel(&Module::resetFPGA, pos);
 }
 
-void Detector::copyDetectorServer(const std::string &fname,
-                                  const std::string &hostname, Positions pos) {
-    LOG(logINFO) << "Updating Detector Server (via tftp)...";
-    pimpl->Parallel(&Module::copyDetectorServer, pos, fname, hostname);
-    if (getDetectorType().squash() != defs::EIGER) {
-        rebootController(pos);
-    }
-}
-
 void Detector::updateDetectorServer(const std::string &fname, Positions pos) {
     LOG(logINFO) << "Updating Detector Server (no tftp)...";
     std::vector<char> buffer = readBinaryFile(fname, "Update Detector Server");
-    std::string filename = sls::getFileNameFromFilePath(fname);
+    std::string filename = getFileNameFromFilePath(fname);
     pimpl->Parallel(&Module::updateDetectorServer, pos, buffer, filename);
     if (getDetectorType().squash() != defs::EIGER) {
         rebootController(pos);
@@ -2263,7 +2294,7 @@ void Detector::updateDetectorServer(const std::string &fname, Positions pos) {
 
 void Detector::updateKernel(const std::string &fname, Positions pos) {
     LOG(logINFO) << "Updating Kernel...";
-    std::vector<char> buffer = sls::readBinaryFile(fname, "Update Kernel");
+    std::vector<char> buffer = readBinaryFile(fname, "Update Kernel");
     pimpl->Parallel(&Module::updateKernel, pos, buffer);
     rebootController(pos);
 }
@@ -2272,23 +2303,13 @@ void Detector::rebootController(Positions pos) {
     pimpl->Parallel(&Module::rebootController, pos);
 }
 
-void Detector::updateFirmwareAndServer(const std::string &sname,
-                                       const std::string &hostname,
-                                       const std::string &fname,
-                                       Positions pos) {
-    LOG(logINFO) << "Updating Firmware and Detector Server (with tftp)...";
-    LOG(logINFO) << "Updating Detector Server (via tftp)...";
-    pimpl->Parallel(&Module::copyDetectorServer, pos, sname, hostname);
-    programFPGA(fname, false, pos);
-}
-
 void Detector::updateFirmwareAndServer(const std::string &sname,
                                        const std::string &fname,
                                        Positions pos) {
     LOG(logINFO) << "Updating Firmware and Detector Server (no tftp)...";
     LOG(logINFO) << "Updating Detector Server (no tftp)...";
     std::vector<char> buffer = readBinaryFile(sname, "Update Detector Server");
-    std::string filename = sls::getFileNameFromFilePath(sname);
+    std::string filename = getFileNameFromFilePath(sname);
     pimpl->Parallel(&Module::updateDetectorServer, pos, buffer, filename);
     programFPGA(fname, false, pos);
 }
@@ -2376,7 +2397,7 @@ void Detector::setDetectorLock(bool lock, Positions pos) {
     pimpl->Parallel(&Module::setLockDetector, pos, lock);
 }
 
-Result<sls::IpAddr> Detector::getLastClientIP(Positions pos) const {
+Result<IpAddr> Detector::getLastClientIP(Positions pos) const {
     return pimpl->Parallel(&Module::getLastClientIP, pos);
 }
 

slsDetectorSoftware/src/DetectorImpl.cpp

@@ -46,8 +46,8 @@ void DetectorImpl::setupDetector(bool verify, bool update) {
         updateUserdetails();
     }
 
-    if (ctb_shm.IsExisting())
-        ctb_shm.OpenSharedMemory();
+    if (ctb_shm.exists())
+        ctb_shm.openSharedMemory(verify);
 }
 
 void DetectorImpl::setAcquiringFlag(bool flag) { shm()->acquiringFlag = flag; }
@@ -58,8 +58,8 @@ void DetectorImpl::freeSharedMemory(int detectorIndex, int detPos) {
     // single
     if (detPos >= 0) {
         SharedMemory<sharedModule> moduleShm(detectorIndex, detPos);
-        if (moduleShm.IsExisting()) {
-            moduleShm.RemoveSharedMemory();
+        if (moduleShm.exists()) {
+            moduleShm.removeSharedMemory();
         }
         return;
     }
@@ -68,20 +68,20 @@ void DetectorImpl::freeSharedMemory(int detectorIndex, int detPos) {
     SharedMemory<sharedDetector> detectorShm(detectorIndex, -1);
     int numModules = 0;
 
-    if (detectorShm.IsExisting()) {
-        detectorShm.OpenSharedMemory();
-        numModules = detectorShm()->numberOfModules;
-        detectorShm.RemoveSharedMemory();
+    if (detectorShm.exists()) {
+        detectorShm.openSharedMemory(false);
+        numModules = detectorShm()->totalNumberOfModules;
+        detectorShm.removeSharedMemory();
     }
 
     for (int i = 0; i < numModules; ++i) {
         SharedMemory<sharedModule> moduleShm(detectorIndex, i);
-        moduleShm.RemoveSharedMemory();
+        moduleShm.removeSharedMemory();
     }
 
     SharedMemory<CtbConfig> ctbShm(detectorIndex, -1, CtbConfig::shm_tag());
-    if (ctbShm.IsExisting())
-        ctbShm.RemoveSharedMemory();
+    if (ctbShm.exists())
+        ctbShm.removeSharedMemory();
 }
 
 void DetectorImpl::freeSharedMemory() {
@@ -92,11 +92,11 @@ void DetectorImpl::freeSharedMemory() {
     modules.clear();
 
     // clear detector shm
-    shm.RemoveSharedMemory();
+    shm.removeSharedMemory();
     client_downstream = false;
 
-    if (ctb_shm.IsExisting())
-        ctb_shm.RemoveSharedMemory();
+    if (ctb_shm.exists())
+        ctb_shm.removeSharedMemory();
 }
 
 std::string DetectorImpl::getUserDetails() {
@@ -140,11 +140,11 @@ void DetectorImpl::setInitialChecks(const bool value) {
 }
 
 void DetectorImpl::initSharedMemory(bool verify) {
-    if (!shm.IsExisting()) {
-        shm.CreateSharedMemory();
+    if (!shm.exists()) {
+        shm.createSharedMemory();
         initializeDetectorStructure();
     } else {
-        shm.OpenSharedMemory();
+        shm.openSharedMemory(verify);
         if (verify && shm()->shmversion != DETECTOR_SHMVERSION) {
             LOG(logERROR) << "Detector shared memory (" << detectorIndex
                           << ") version mismatch "
@@ -155,14 +155,16 @@ void DetectorImpl::initSharedMemory(bool verify) {
             throw SharedMemoryError("Shared memory version mismatch!");
         }
     }
+
+    // std::cout <<
 }
 
 void DetectorImpl::initializeDetectorStructure() {
     shm()->shmversion = DETECTOR_SHMVERSION;
-    shm()->numberOfModules = 0;
+    shm()->totalNumberOfModules = 0;
     shm()->detType = GENERIC;
-    shm()->numberOfModule.x = 0;
-    shm()->numberOfModule.y = 0;
+    shm()->numberOfModules.x = 0;
+    shm()->numberOfModules.y = 0;
     shm()->numberOfChannels.x = 0;
     shm()->numberOfChannels.y = 0;
     shm()->acquiringFlag = false;
@@ -170,6 +172,10 @@ void DetectorImpl::initializeDetectorStructure() {
     shm()->gapPixels = false;
     // zmqlib default
     shm()->zmqHwm = -1;
+    shm()->rx_roi.xmin = -1;
+    shm()->rx_roi.xmax = -1;
+    shm()->rx_roi.ymin = -1;
+    shm()->rx_roi.ymax = -1;
 }
 
 void DetectorImpl::initializeMembers(bool verify) {
@@ -177,10 +183,10 @@ void DetectorImpl::initializeMembers(bool verify) {
     zmqSocket.clear();
 
     // get objects from single det shared memory (open)
-    for (int i = 0; i < shm()->numberOfModules; i++) {
+    for (int i = 0; i < shm()->totalNumberOfModules; i++) {
         try {
             modules.push_back(
-                sls::make_unique<Module>(detectorIndex, i, verify));
+                make_unique<Module>(detectorIndex, i, verify));
         } catch (...) {
             modules.clear();
             throw;
@@ -193,11 +199,11 @@ void DetectorImpl::updateUserdetails() {
     memset(shm()->lastUser, 0, sizeof(shm()->lastUser));
     memset(shm()->lastDate, 0, sizeof(shm()->lastDate));
     try {
-        sls::strcpy_safe(shm()->lastUser, exec("whoami").c_str());
-        sls::strcpy_safe(shm()->lastDate, exec("date").c_str());
+        strcpy_safe(shm()->lastUser, exec("whoami").c_str());
+        strcpy_safe(shm()->lastDate, exec("date").c_str());
     } catch (...) {
-        sls::strcpy_safe(shm()->lastUser, "errorreading");
-        sls::strcpy_safe(shm()->lastDate, "errorreading");
+        strcpy_safe(shm()->lastUser, "errorreading");
+        strcpy_safe(shm()->lastDate, "errorreading");
     }
 }
 
@@ -244,7 +250,7 @@ void DetectorImpl::setVirtualDetectorServers(const int numdet, const int port) {
 
 void DetectorImpl::setHostname(const std::vector<std::string> &name) {
     // this check is there only to allow the previous detsizechan command
-    if (shm()->numberOfModules != 0) {
+    if (shm()->totalNumberOfModules != 0) {
         LOG(logWARNING) << "There are already module(s) in shared memory."
                            "Freeing Shared memory now.";
         bool initialChecks = shm()->initialChecks;
@@ -261,10 +267,10 @@ void DetectorImpl::setHostname(const std::vector<std::string> &name) {
     // if needed, CTB dac names are only on detector level
 
     if (shm()->detType == defs::CHIPTESTBOARD) {
-        if (ctb_shm.IsExisting())
-            ctb_shm.OpenSharedMemory();
+        if (ctb_shm.exists())
+            ctb_shm.openSharedMemory(true);
         else
-            ctb_shm.CreateSharedMemory();
+            ctb_shm.createSharedMemory();
     }
 }
 
@@ -273,7 +279,7 @@ void DetectorImpl::addModule(const std::string &hostname) {
 
     int port = DEFAULT_PORTNO;
     std::string host = hostname;
-    auto res = sls::split(hostname, ':');
+    auto res = split(hostname, ':');
     if (res.size() > 1) {
         host = res[0];
         port = StringTo<int>(res[1]);
@@ -297,13 +303,13 @@ void DetectorImpl::addModule(const std::string &hostname) {
     // gotthard cannot have more than 2 modules (50um=1, 25um=2
     if ((type == GOTTHARD || type == GOTTHARD2) && modules.size() > 2) {
         freeSharedMemory();
-        throw sls::RuntimeError("Gotthard cannot have more than 2 modules");
+        throw RuntimeError("Gotthard cannot have more than 2 modules");
     }
 
     auto pos = modules.size();
     modules.emplace_back(
-        sls::make_unique<Module>(type, detectorIndex, pos, false));
-    shm()->numberOfModules = modules.size();
+        make_unique<Module>(type, detectorIndex, pos, false));
+    shm()->totalNumberOfModules = modules.size();
     modules[pos]->setControlPort(port);
     modules[pos]->setStopPort(port + 1);
     modules[pos]->setHostname(host, shm()->initialChecks);
@@ -326,49 +332,48 @@ void DetectorImpl::addModule(const std::string &hostname) {
 void DetectorImpl::updateDetectorSize() {
     LOG(logDEBUG) << "Updating Detector Size: " << size();
 
-    const slsDetectorDefs::xy det_size = modules[0]->getNumberOfChannels();
-
-    if (det_size.x == 0 || det_size.y == 0) {
-        throw sls::RuntimeError(
+    const slsDetectorDefs::xy modSize = modules[0]->getNumberOfChannels();
+    if (modSize.x == 0 || modSize.y == 0) {
+        throw RuntimeError(
             "Module size for x or y dimensions is 0. Unable to proceed in "
             "updating detector size. ");
     }
 
     int maxx = shm()->numberOfChannels.x;
     int maxy = shm()->numberOfChannels.y;
-    int ndetx = 0, ndety = 0;
+    int nModx = 0, nMody = 0;
     // 1d, add modules along x axis
-    if (det_size.y == 1) {
+    if (modSize.y == 1) {
         if (maxx == 0) {
-            maxx = det_size.x * size();
+            maxx = modSize.x * size();
         }
-        ndetx = maxx / det_size.x;
-        ndety = size() / ndetx;
-        if ((maxx % det_size.x) > 0) {
-            ++ndety;
+        nModx = maxx / modSize.x;
+        nMody = size() / nModx;
+        if ((maxx % modSize.x) > 0) {
+            ++nMody;
         }
     }
     // 2d, add modules along y axis (due to eiger top/bottom)
     else {
         if (maxy == 0) {
-            maxy = det_size.y * size();
+            maxy = modSize.y * size();
         }
-        ndety = maxy / det_size.y;
-        ndetx = size() / ndety;
-        if ((maxy % det_size.y) > 0) {
-            ++ndetx;
+        nMody = maxy / modSize.y;
+        nModx = size() / nMody;
+        if ((maxy % modSize.y) > 0) {
+            ++nModx;
         }
     }
 
-    shm()->numberOfModule.x = ndetx;
-    shm()->numberOfModule.y = ndety;
-    shm()->numberOfChannels.x = det_size.x * ndetx;
-    shm()->numberOfChannels.y = det_size.y * ndety;
+    shm()->numberOfModules.x = nModx;
+    shm()->numberOfModules.y = nMody;
+    shm()->numberOfChannels.x = modSize.x * nModx;
+    shm()->numberOfChannels.y = modSize.y * nMody;
 
     LOG(logDEBUG) << "\n\tNumber of Modules in X direction:"
-                  << shm()->numberOfModule.x
+                  << shm()->numberOfModules.x
                   << "\n\tNumber of Modules in Y direction:"
-                  << shm()->numberOfModule.y
+                  << shm()->numberOfModules.y
                   << "\n\tNumber of Channels in X direction:"
                   << shm()->numberOfChannels.x
                   << "\n\tNumber of Channels in Y direction:"
@@ -376,7 +381,7 @@ void DetectorImpl::updateDetectorSize() {
 
     for (auto &module : modules) {
         if (module->getUpdateMode() == 0) {
-            module->updateNumberOfModule(shm()->numberOfModule);
+            module->updateNumberOfModule(shm()->numberOfModules);
         }
     }
 }
@@ -384,7 +389,7 @@ void DetectorImpl::updateDetectorSize() {
 int DetectorImpl::size() const { return modules.size(); }
 
 slsDetectorDefs::xy DetectorImpl::getNumberOfModules() const {
-    return shm()->numberOfModule;
+    return shm()->numberOfModules;
 }
 
 slsDetectorDefs::xy DetectorImpl::getNumberOfChannels() const {
@@ -410,7 +415,7 @@ void DetectorImpl::setGapPixelsinCallback(const bool enable) {
             if (size() && modules[0]->getQuad()) {
                 break;
             }
-            if (shm()->numberOfModule.y % 2 != 0) {
+            if (shm()->numberOfModules.y % 2 != 0) {
                 throw RuntimeError("Gap pixels can only be used "
                                    "for full modules.");
             }
@@ -453,7 +458,7 @@ int DetectorImpl::createReceivingDataSockets() {
         portnum += (iSocket % numUDPInterfaces);
         try {
             zmqSocket.push_back(
-                sls::make_unique<ZmqSocket>(modules[iSocket / numUDPInterfaces]
+                make_unique<ZmqSocket>(modules[iSocket / numUDPInterfaces]
                                                 ->getClientStreamingIP()
                                                 .str()
                                                 .c_str(),
@@ -463,7 +468,7 @@ int DetectorImpl::createReceivingDataSockets() {
             if (hwm >= 0) {
                 zmqSocket[iSocket]->SetReceiveHighWaterMark(hwm);
                 if (zmqSocket[iSocket]->GetReceiveHighWaterMark() != hwm) {
-                    throw sls::ZmqSocketError("Could not set zmq rcv hwm to " +
+                    throw ZmqSocketError("Could not set zmq rcv hwm to " +
                                               std::to_string(hwm));
                 }
             }
@@ -493,6 +498,7 @@ void DetectorImpl::readFrameFromReceiver() {
     bool quadEnable = false;
     // to flip image
     bool eiger = false;
+    std::array<int, 4> rxRoi = shm()->rx_roi.getIntArray();
 
     std::vector<bool> runningList(zmqSocket.size());
     std::vector<bool> connectList(zmqSocket.size());
@@ -560,8 +566,8 @@ void DetectorImpl::readFrameFromReceiver() {
                         // allocate
                         size = zHeader.imageSize;
                         multisize = size * zmqSocket.size();
-                        image = sls::make_unique<char[]>(size);
-                        multiframe = sls::make_unique<char[]>(multisize);
+                        image = make_unique<char[]>(size);
+                        multiframe = make_unique<char[]>(multisize);
                         memset(multiframe.get(), 0xFF, multisize);
                         // dynamic range
                         dynamicRange = zHeader.dynamicRange;
@@ -569,7 +575,7 @@ void DetectorImpl::readFrameFromReceiver() {
                         // shape
                         nPixelsX = zHeader.npixelsx;
                         nPixelsY = zHeader.npixelsy;
-                        // module shape (port)
+                        // port geometry
                         nX = zHeader.ndetx;
                         nY = zHeader.ndety;
                         nDetPixelsX = nX * nPixelsX;
@@ -600,14 +606,12 @@ void DetectorImpl::readFrameFromReceiver() {
                     currentSubFrameIndex = zHeader.expLength;
                     coordY = zHeader.row;
                     coordX = zHeader.column;
-                    if (eiger) {
-                        coordY = (nY - 1) - coordY;
-                    }
                     flipRows = zHeader.flipRows;
                     if (zHeader.completeImage == 0) {
                         completeImage = false;
                     }
                     LOG(logDEBUG1)
+                        << zmqSocket[isocket]->GetPortNumber() << " "
                         << "Header Info:"
                            "\n\tcurrentFileName: "
                         << currentFileName << "\n\tcurrentAcquisitionIndex: "
@@ -668,6 +672,7 @@ void DetectorImpl::readFrameFromReceiver() {
                       << "\n\t databytes: " << multisize
                       << "\n\t dynamicRange: " << dynamicRange;
 
+ 
         // send data to callback
         if (data) {
             char *callbackImage = multiframe.get();
@@ -691,7 +696,7 @@ void DetectorImpl::readFrameFromReceiver() {
             thisData = new detectorData(currentProgress, currentFileName,
                                         nDetActualPixelsX, nDetActualPixelsY,
                                         callbackImage, imagesize, dynamicRange,
-                                        currentFileIndex, completeImage);
+                                        currentFileIndex, completeImage, rxRoi);
             try {
                 dataReady(
                     thisData, currentFrameIndex,
@@ -1032,7 +1037,7 @@ int DetectorImpl::getClientStreamingHwm() const {
         return shm()->zmqHwm;
     }
     // enabled
-    sls::Result<int> result;
+    Result<int> result;
     result.reserve(zmqSocket.size());
     for (auto &it : zmqSocket) {
         result.push_back(it->GetReceiveHighWaterMark());
@@ -1043,7 +1048,7 @@ int DetectorImpl::getClientStreamingHwm() const {
 
 void DetectorImpl::setClientStreamingHwm(const int limit) {
     if (limit < -1) {
-        throw sls::RuntimeError(
+        throw RuntimeError(
             "Cannot set hwm to less than -1 (-1 is lib default).");
     }
     // update shm
@@ -1057,7 +1062,7 @@ void DetectorImpl::setClientStreamingHwm(const int limit) {
                 it->SetReceiveHighWaterMark(limit);
                 if (it->GetReceiveHighWaterMark() != limit) {
                     shm()->zmqHwm = -1;
-                    throw sls::ZmqSocketError("Could not set zmq rcv hwm to " +
+                    throw ZmqSocketError("Could not set zmq rcv hwm to " +
                                               std::to_string(limit));
                 }
             }
@@ -1094,9 +1099,6 @@ int DetectorImpl::acquire() {
         return FAIL;
     }
 
-    // We need this to handle Mythen3 synchronization
-    auto detector_type = Parallel(&Module::getDetectorType, {}).squash();
-
     try {
         struct timespec begin, end;
         clock_gettime(CLOCK_REALTIME, &begin);
@@ -1124,25 +1126,7 @@ int DetectorImpl::acquire() {
 
         // start and read all
         try {
-            if (detector_type == defs::MYTHEN3 && modules.size() > 1) {
-                // Multi module mythen
-                std::vector<int> master;
-                std::vector<int> slaves;
-                auto is_master = Parallel(&Module::isMaster, {});
-                slaves.reserve(modules.size() - 1); // check this one!!
-                for (size_t i = 0; i < modules.size(); ++i) {
-                    if (is_master[i])
-                        master.push_back(i);
-                    else
-                        slaves.push_back(i);
-                }
-                Parallel(&Module::startAcquisition, slaves);
-                Parallel(&Module::startAndReadAll, master);
-            } else {
-                // Normal acquire
-                Parallel(&Module::startAndReadAll, {});
-            }
-
+            startAcquisition(true, {});
         } catch (...) {
             if (receiver)
                 Parallel(&Module::stopReceiver, {});
@@ -1191,6 +1175,45 @@ int DetectorImpl::acquire() {
     return OK;
 }
 
+void DetectorImpl::startAcquisition(bool blocking, std::vector<int> positions) {
+    // handle Mythen3 synchronization
+    if (shm()->detType == defs::MYTHEN3 && size() > 1) {
+        std::vector<int> master;
+        std::vector<int> slaves;
+        if (positions.empty() ||
+            (positions.size() == 1 && positions[0] == -1)) {
+            positions.resize(modules.size());
+            std::iota(begin(positions), end(positions), 0);
+        }
+        // could be all slaves in positions
+        slaves.reserve(positions.size()); 
+        auto is_master = Parallel(&Module::isMaster, positions);
+        for (size_t i : positions) {
+            if (is_master[i]) 
+                master.push_back(i);
+            else
+                slaves.push_back(i);
+        }
+
+        if (!slaves.empty()) {
+            Parallel(&Module::startAcquisition, slaves);
+        }
+        if (!master.empty()) {
+            if (blocking) {
+                Parallel(&Module::startAndReadAll, master);
+            } else {
+                Parallel(&Module::startAcquisition, master);
+            }
+        }
+    } else {
+        if (blocking) {
+            Parallel(&Module::startAndReadAll, positions);
+        } else {
+            Parallel(&Module::startAcquisition, positions);
+        }
+    }
+}
+
 void DetectorImpl::printProgress(double progress) {
     // spaces for python printout
     std::cout << "    " << std::fixed << std::setprecision(2) << std::setw(6)
@@ -1286,8 +1309,13 @@ std::vector<char> DetectorImpl::readProgrammingFile(const std::string &fname) {
             throw RuntimeError("Programming file must be an rbf file.");
         }
         break;
-    default:
+    case EIGER:
+    case GOTTHARD:
         throw RuntimeError("programfpga not implemented for this detector");
+    default:
+        throw RuntimeError(
+            "Unknown detector type. Did the 'hostname' command execute "
+            "successfully? Or use update mode in the detector server side.");
     }
 
     LOG(logINFO) << "This can take awhile. Please be patient.";
@@ -1308,7 +1336,7 @@ std::vector<char> DetectorImpl::readProgrammingFile(const std::string &fname) {
     }
 
     // get srcSize to print progress
-    ssize_t srcSize = sls::getFileSize(src, "Program FPGA");
+    ssize_t srcSize = getFileSize(src, "Program FPGA");
 
     // create temp destination file
     char destfname[] = "/tmp/SLS_DET_MCB.XXXXXX";
@@ -1389,7 +1417,7 @@ std::vector<char> DetectorImpl::readProgrammingFile(const std::string &fname) {
     return buffer;
 }
 
-sls::Result<int> DetectorImpl::getDefaultDac(defs::dacIndex index,
+Result<int> DetectorImpl::getDefaultDac(defs::dacIndex index,
                                              defs::detectorSettings sett,
                                              Positions pos) {
     return Parallel(&Module::getDefaultDac, pos, index, sett);
@@ -1400,6 +1428,218 @@ void DetectorImpl::setDefaultDac(defs::dacIndex index, int defaultValue,
     Parallel(&Module::setDefaultDac, pos, index, defaultValue, sett);
 }
 
+defs::xy DetectorImpl::getPortGeometry() const {
+    defs::xy portGeometry(1, 1);
+    switch (shm()->detType) {
+    case EIGER:
+        portGeometry.x = modules[0]->getNumberofUDPInterfacesFromShm();
+        break;
+    case JUNGFRAU:
+        portGeometry.y = modules[0]->getNumberofUDPInterfacesFromShm();
+        break;
+    default:
+        break;
+    }
+    return portGeometry;
+}
+
+defs::xy DetectorImpl::calculatePosition(int moduleIndex,
+                                         defs::xy geometry) const {
+    defs::xy pos{};
+    int maxYMods = shm()->numberOfModules.y;
+    pos.y = (moduleIndex % maxYMods) * geometry.y;
+    pos.x = (moduleIndex / maxYMods) * geometry.x;
+    return pos;
+}
+
+defs::ROI DetectorImpl::getRxROI() const {
+    if (shm()->detType == CHIPTESTBOARD || shm()->detType == MOENCH) {
+        throw RuntimeError("RxRoi not implemented for this Detector");
+    }
+    if (modules.size() == 0) {
+        throw RuntimeError("No Modules added");
+    }
+    // complete detector in roi
+    auto t = Parallel(&Module::getRxROI, {});
+    if (t.equal() && t.front().completeRoi()) {
+        LOG(logDEBUG) << "no roi";
+        return defs::ROI (0, shm()->numberOfChannels.x - 1, 0, shm()->numberOfChannels.y - 1);
+    }
+
+    defs::xy numChansPerMod = modules[0]->getNumberOfChannels();
+    bool is2D = (numChansPerMod.y > 1 ? true : false);
+    defs::xy geometry = getPortGeometry();
+
+    defs::ROI retval{};
+    for (size_t iModule = 0; iModule != modules.size(); ++iModule) {
+
+        defs::ROI moduleRoi = modules[iModule]->getRxROI();
+        if (moduleRoi.noRoi()) {
+            LOG(logDEBUG) << iModule << ": no roi";
+        } else {
+            // expand complete roi
+            if (moduleRoi.completeRoi()) {
+                moduleRoi.xmin = 0;
+                moduleRoi.xmax = numChansPerMod.x;
+                if (is2D) {
+                    moduleRoi.ymin = 0;
+                    moduleRoi.ymax = numChansPerMod.y;
+                }
+            }
+            LOG(logDEBUG) << iModule << ": " << moduleRoi;
+
+            // get roi at detector level
+            defs::xy pos = calculatePosition(iModule, geometry);
+            defs::ROI moduleFullRoi{};
+            moduleFullRoi.xmin = numChansPerMod.x * pos.x + moduleRoi.xmin;
+            moduleFullRoi.xmax = numChansPerMod.x * pos.x + moduleRoi.xmax;
+            if (is2D) {
+                moduleFullRoi.ymin = numChansPerMod.y * pos.y + moduleRoi.ymin;
+                moduleFullRoi.ymax = numChansPerMod.y * pos.y + moduleRoi.ymax;
+            }
+            LOG(logDEBUG) << iModule << ": (full roi)" << moduleFullRoi;
+
+            // get min and max
+            if (retval.xmin == -1 || moduleFullRoi.xmin < retval.xmin) {
+                LOG(logDEBUG) << iModule << ": xmin updated";
+                retval.xmin = moduleFullRoi.xmin;
+            }
+            if (retval.xmax == -1 || moduleFullRoi.xmax > retval.xmax) {
+                LOG(logDEBUG) << iModule << ": xmax updated";
+                retval.xmax = moduleFullRoi.xmax;
+            }
+            if (retval.ymin == -1 || moduleFullRoi.ymin < retval.ymin) {
+                LOG(logDEBUG) << iModule << ": ymin updated";
+                retval.ymin = moduleFullRoi.ymin;
+            }
+            if (retval.ymax == -1 || moduleFullRoi.ymax > retval.ymax) {
+                LOG(logDEBUG) << iModule << ": ymax updated";
+                retval.ymax = moduleFullRoi.ymax;
+            }
+        }
+        LOG(logDEBUG) << iModule << ": (retval): " << retval;
+    }
+    if (retval.ymin == -1) {
+        retval.ymin = 0;
+        retval.ymax = 0;
+    }
+    return retval;
+}
+
+void DetectorImpl::setRxROI(const defs::ROI arg) {
+    if (shm()->detType == CHIPTESTBOARD || shm()->detType == MOENCH) {
+        throw RuntimeError("RxRoi not implemented for this Detector");
+    }
+    if (modules.size() == 0) {
+        throw RuntimeError("No Modules added");
+    }
+    if (arg.noRoi()) {
+        throw RuntimeError("Invalid Roi of size 0.");
+    }
+    if (arg.completeRoi()) {
+        throw RuntimeError("Did you mean the clear roi command (API: clearRxROI, cmd: rx_clearroi)?");
+    }
+    if (arg.xmin > arg.xmax || arg.ymin > arg.ymax) {
+        throw RuntimeError("Invalid Receiver Roi. xmin/ymin exceeds xmax/ymax.");
+    }
+
+    defs::xy numChansPerMod = modules[0]->getNumberOfChannels();
+    bool is2D = (numChansPerMod.y > 1 ? true : false);
+    defs::xy geometry = getPortGeometry();
+
+    if (!is2D && ((arg.ymin != -1 && arg.ymin != 0) || (arg.ymax != -1 && arg.ymax != 0))) {
+        throw RuntimeError("Invalid Receiver roi. Cannot set 2d roi for a 1d detector.");
+    }
+
+    if (arg.xmin < 0 || arg.xmax >= shm()->numberOfChannels.x || (is2D && (arg.ymin < 0 || arg.ymax >= shm()->numberOfChannels.y))) {
+        throw RuntimeError("Invalid Receiver Roi. Outside detector range.");
+    }
+
+    for (size_t iModule = 0; iModule != modules.size(); ++iModule) {
+        // default init = complete roi
+        defs::ROI moduleRoi{};
+
+        // incomplete roi
+        if (!arg.completeRoi()) {
+            // multi module Gotthard2
+            if (shm()->detType == GOTTHARD2 && size() > 1) {
+                moduleRoi.xmin = arg.xmin / 2;
+                moduleRoi.xmax = arg.xmax / 2;
+                if (iModule == 0) {
+                    // all should be even
+                    if (arg.xmin % 2 != 0) {
+                        ++moduleRoi.xmin;
+                    }
+                } else if (iModule == 1) {
+                    // all should be odd
+                    if (arg.xmax % 2 == 0) {
+                        --moduleRoi.xmax;
+                    }
+                } else {
+                    throw RuntimeError("Cannot have more than 2 modules for a Gotthard2 detector");
+                }
+            } else {
+                // get module limits
+                defs::xy pos = calculatePosition(iModule, geometry);
+                defs::ROI moduleFullRoi{};
+                moduleFullRoi.xmin = numChansPerMod.x * pos.x;
+                moduleFullRoi.xmax = numChansPerMod.x * (pos.x + 1) - 1;
+                if (is2D) {
+                    moduleFullRoi.ymin = numChansPerMod.y * pos.y;
+                    moduleFullRoi.ymax = numChansPerMod.y * (pos.y + 1) - 1;
+                }
+
+                // no roi
+                if (arg.xmin > moduleFullRoi.xmax ||
+                    arg.xmax < moduleFullRoi.xmin ||
+                    (is2D && (arg.ymin > moduleFullRoi.ymax ||
+                            arg.ymax < moduleFullRoi.ymin))) {
+                    moduleRoi.setNoRoi();
+                }
+                // incomplete module roi
+                else if (arg.xmin > moduleFullRoi.xmin ||
+                        arg.xmax < moduleFullRoi.xmax ||
+                        (is2D && (arg.ymin > moduleFullRoi.ymin ||
+                                arg.ymax < moduleFullRoi.ymax))) {
+                    moduleRoi.xmin = (arg.xmin <= moduleFullRoi.xmin)
+                                        ? 0
+                                        : (arg.xmin % numChansPerMod.x);
+                    moduleRoi.xmax = (arg.xmax >= moduleFullRoi.xmax)
+                                        ? numChansPerMod.x - 1
+                                        : (arg.xmax % numChansPerMod.x);
+                    if (is2D) {
+                        moduleRoi.ymin = (arg.ymin <= moduleFullRoi.ymin)
+                                            ? 0
+                                            : (arg.ymin % numChansPerMod.y);
+                        moduleRoi.ymax = (arg.ymax >= moduleFullRoi.ymax)
+                                            ? numChansPerMod.y - 1
+                                            : (arg.ymax % numChansPerMod.y);
+                    }
+                }
+            }
+        }
+        modules[iModule]->setRxROI(moduleRoi);
+    }
+    // updating shm rx_roi for gui purposes
+    shm()->rx_roi = arg;
+
+    // metadata
+    if (arg.completeRoi()) {
+        modules[0]->setRxROIMetadata(defs::ROI (0, shm()->numberOfChannels.x - 1, 0, shm()->numberOfChannels.y - 1));
+    } else {
+        modules[0]->setRxROIMetadata(arg);
+    }
+}
+
+void DetectorImpl::clearRxROI() {
+    Parallel(&Module::setRxROI, {}, defs::ROI{});
+    shm()->rx_roi.xmin = -1;
+    shm()->rx_roi.ymin = -1;
+    shm()->rx_roi.xmax = -1;
+    shm()->rx_roi.ymax = -1;
+}
+
+
 std::vector<std::string> DetectorImpl::getCtbDacNames() const {
     return ctb_shm()->getDacNames();
 }

slsDetectorSoftware/src/DetectorImpl.h

@@ -6,11 +6,7 @@
 #include "sls/Result.h"
 #include "sls/logger.h"
 #include "sls/sls_detector_defs.h"
-
-
 #include "CtbConfig.h"
-class ZmqSocket;
-class detectorData;
 
 #include <memory>
 #include <mutex>
@@ -18,18 +14,19 @@ class detectorData;
 #include <string>
 #include <thread>
 #include <vector>
-
-#define DETECTOR_SHMAPIVERSION 0x190809
-#define DETECTOR_SHMVERSION    0x201007
-#define SHORT_STRING_LENGTH    50
-
 #include <future>
 #include <numeric>
 
 namespace sls {
 
+class ZmqSocket;
+class detectorData;
 class Module;
 
+#define DETECTOR_SHMAPIVERSION 0x190809
+#define DETECTOR_SHMVERSION    0x220505
+#define SHORT_STRING_LENGTH    50
+
 /**
  * @short structure allocated in shared memory to store detector settings
  * for IPC and cache
@@ -51,14 +48,14 @@ struct sharedDetector {
     /** last time stamp when accessing the shared memory */
     char lastDate[SHORT_STRING_LENGTH];
 
-    int numberOfModules;
+    int totalNumberOfModules;
     slsDetectorDefs::detectorType detType;
 
     /** END OF FIXED PATTERN
      * -----------------------------------------------*/
 
     /** Number of modules operated at once */
-    slsDetectorDefs::xy numberOfModule;
+    slsDetectorDefs::xy numberOfModules;
 
     /**  max number of channels for complete detector*/
     slsDetectorDefs::xy numberOfChannels;
@@ -68,6 +65,8 @@ struct sharedDetector {
     bool gapPixels;
     /** high water mark of listening tcp port (only data) */
     int zmqHwm;
+    /** in shm for gui purposes */
+    defs::ROI rx_roi{};
 };
 
 class DetectorImpl : public virtual slsDetectorDefs {
@@ -87,12 +86,12 @@ class DetectorImpl : public virtual slsDetectorDefs {
 
     template <class CT> struct NonDeduced { using type = CT; };
     template <typename RT, typename... CT>
-    sls::Result<RT> Parallel(RT (sls::Module::*somefunc)(CT...),
+    Result<RT> Parallel(RT (Module::*somefunc)(CT...),
                              std::vector<int> positions,
                              typename NonDeduced<CT>::type... Args) {
 
         if (modules.empty())
-            throw sls::RuntimeError("No modules added");
+            throw RuntimeError("No modules added");
         if (positions.empty() ||
             (positions.size() == 1 && positions[0] == -1)) {
             positions.resize(modules.size());
@@ -102,11 +101,11 @@ class DetectorImpl : public virtual slsDetectorDefs {
         futures.reserve(positions.size());
         for (size_t i : positions) {
             if (i >= modules.size())
-                throw sls::RuntimeError("Module out of range");
+                throw RuntimeError("Module out of range");
             futures.push_back(std::async(std::launch::async, somefunc,
                                          modules[i].get(), Args...));
         }
-        sls::Result<RT> result;
+        Result<RT> result;
         result.reserve(positions.size());
         for (auto &i : futures) {
             result.push_back(i.get());
@@ -115,12 +114,12 @@ class DetectorImpl : public virtual slsDetectorDefs {
     }
 
     template <typename RT, typename... CT>
-    sls::Result<RT> Parallel(RT (sls::Module::*somefunc)(CT...) const,
+    Result<RT> Parallel(RT (Module::*somefunc)(CT...) const,
                              std::vector<int> positions,
                              typename NonDeduced<CT>::type... Args) const {
 
         if (modules.empty())
-            throw sls::RuntimeError("No modules added");
+            throw RuntimeError("No modules added");
         if (positions.empty() ||
             (positions.size() == 1 && positions[0] == -1)) {
             positions.resize(modules.size());
@@ -130,11 +129,11 @@ class DetectorImpl : public virtual slsDetectorDefs {
         futures.reserve(positions.size());
         for (size_t i : positions) {
             if (i >= modules.size())
-                throw sls::RuntimeError("Module out of range");
+                throw RuntimeError("Module out of range");
             futures.push_back(std::async(std::launch::async, somefunc,
                                          modules[i].get(), Args...));
         }
-        sls::Result<RT> result;
+        Result<RT> result;
         result.reserve(positions.size());
         for (auto &i : futures) {
             result.push_back(i.get());
@@ -143,12 +142,12 @@ class DetectorImpl : public virtual slsDetectorDefs {
     }
 
     template <typename... CT>
-    void Parallel(void (sls::Module::*somefunc)(CT...),
+    void Parallel(void (Module::*somefunc)(CT...),
                   std::vector<int> positions,
                   typename NonDeduced<CT>::type... Args) {
 
         if (modules.empty())
-            throw sls::RuntimeError("No modules added");
+            throw RuntimeError("No modules added");
         if (positions.empty() ||
             (positions.size() == 1 && positions[0] == -1)) {
             positions.resize(modules.size());
@@ -158,7 +157,7 @@ class DetectorImpl : public virtual slsDetectorDefs {
         futures.reserve(positions.size());
         for (size_t i : positions) {
             if (i >= modules.size())
-                throw sls::RuntimeError("Module out of range");
+                throw RuntimeError("Module out of range");
             futures.push_back(std::async(std::launch::async, somefunc,
                                          modules[i].get(), Args...));
         }
@@ -168,12 +167,12 @@ class DetectorImpl : public virtual slsDetectorDefs {
     }
 
     template <typename... CT>
-    void Parallel(void (sls::Module::*somefunc)(CT...) const,
+    void Parallel(void (Module::*somefunc)(CT...) const,
                   std::vector<int> positions,
                   typename NonDeduced<CT>::type... Args) const {
 
         if (modules.empty())
-            throw sls::RuntimeError("No modules added");
+            throw RuntimeError("No modules added");
         if (positions.empty() ||
             (positions.size() == 1 && positions[0] == -1)) {
             positions.resize(modules.size());
@@ -183,7 +182,7 @@ class DetectorImpl : public virtual slsDetectorDefs {
         futures.reserve(positions.size());
         for (size_t i : positions) {
             if (i >= modules.size())
-                throw sls::RuntimeError("Module out of range");
+                throw RuntimeError("Module out of range");
             futures.push_back(std::async(std::launch::async, somefunc,
                                          modules[i].get(), Args...));
         }
@@ -278,6 +277,9 @@ class DetectorImpl : public virtual slsDetectorDefs {
      */
     int acquire();
 
+    /** also takes care of master and slave for multi module mythen */
+    void startAcquisition(bool blocking, std::vector<int> positions);
+
     /**
      * Combines data from all readouts and gives it to the gui
      * or just gives progress of acquisition by polling receivers
@@ -294,16 +296,18 @@ class DetectorImpl : public virtual slsDetectorDefs {
     std::vector<char> readProgrammingFile(const std::string &fname);
 
     void setNumberofUDPInterfaces(int n, Positions pos);
-    sls::Result<int> getDefaultDac(defs::dacIndex index,
+    Result<int> getDefaultDac(defs::dacIndex index,
                                    defs::detectorSettings sett,
                                    Positions pos = {});
     void setDefaultDac(defs::dacIndex index, int defaultValue,
                        defs::detectorSettings sett, Positions pos);
-
+    defs::ROI getRxROI() const;
+    void setRxROI(const defs::ROI arg);
+    void clearRxROI();
 
     std::vector<std::string> getCtbDacNames() const;
     std::string getCtbDacName(defs::dacIndex i) const;
-    void setCtbDacNames(const std::vector<std::string>& names);
+    void setCtbDacNames(const std::vector<std::string> &names);
 
   private:
     /**
@@ -386,10 +390,13 @@ class DetectorImpl : public virtual slsDetectorDefs {
      */
     int kbhit();
 
+    defs::xy getPortGeometry() const;
+    defs::xy calculatePosition(int moduleIndex, defs::xy geometry) const;
+
     const int detectorIndex{0};
-    sls::SharedMemory<sharedDetector> shm{0, -1};
-    sls::SharedMemory<CtbConfig> ctb_shm{0, -1, CtbConfig::shm_tag()};
-    std::vector<std::unique_ptr<sls::Module>> modules;
+    SharedMemory<sharedDetector> shm{0, -1};
+    SharedMemory<CtbConfig> ctb_shm{0, -1, CtbConfig::shm_tag()};
+    std::vector<std::unique_ptr<Module>> modules;
 
     /** data streaming (down stream) enabled in client (zmq sckets created) */
     bool client_downstream{false};

slsDetectorSoftware/src/HelpDacs.h

@@ -2,6 +2,8 @@
 // Copyright (C) 2021 Contributors to the SLS Detector Package
 #include "sls/string_utils.h"
 
+namespace sls {
+
 std::string GetHelpDac(std::string dac) {
     if (sls::is_int(dac)) {
         return std::string("[dac name] [dac or mV value] [(optional unit) mV] "
@@ -304,3 +306,5 @@ std::string GetHelpDac(std::string dac) {
 
     throw sls::RuntimeError("Unknown dac command");
 }
+
+} // namespace sls

slsDetectorSoftware/src/Module.cpp

@@ -33,11 +33,11 @@ Module::Module(detectorType type, int det_id, int module_index, bool verify)
     : moduleIndex(module_index), shm(det_id, module_index) {
 
     // ensure shared memory was not created before
-    if (shm.IsExisting()) {
+    if (shm.exists()) {
         LOG(logWARNING) << "This shared memory should have been "
                            "deleted before! "
-                        << shm.GetName() << ". Freeing it again";
-        shm.RemoveSharedMemory();
+                        << shm.getName() << ". Freeing it again";
+        shm.removeSharedMemory();
     }
 
     initSharedMemory(type, det_id, verify);
@@ -55,8 +55,8 @@ Module::Module(int det_id, int module_index, bool verify)
 Module::~Module() = default;
 
 void Module::freeSharedMemory() {
-    if (shm.IsExisting()) {
-        shm.RemoveSharedMemory();
+    if (shm.exists()) {
+        shm.removeSharedMemory();
     }
 }
 
@@ -68,7 +68,7 @@ std::string Module::getHostname() const { return shm()->hostname; }
 
 void Module::setHostname(const std::string &hostname,
                          const bool initialChecks) {
-    sls::strcpy_safe(shm()->hostname, hostname.c_str());
+    strcpy_safe(shm()->hostname, hostname.c_str());
     auto client = DetectorSocket(shm()->hostname, shm()->controlPort);
     client.close();
     try {
@@ -117,7 +117,7 @@ int64_t Module::getReceiverSoftwareVersion() const {
 slsDetectorDefs::detectorType
 Module::getTypeFromDetector(const std::string &hostname, int cport) {
     LOG(logDEBUG1) << "Getting Module type ";
-    sls::ClientSocket socket("Detector", hostname, cport);
+    ClientSocket socket("Detector", hostname, cport);
     socket.Send(F_GET_DETECTOR_TYPE);
     socket.Receive<int>(); // TODO! Should we look at this OK/FAIL?
     auto retval = socket.Receive<detectorType>();
@@ -173,7 +173,9 @@ std::array<int, 3> Module::getAllThresholdEnergy() const {
 
 void Module::setThresholdEnergy(int e_eV, detectorSettings isettings,
                                 bool trimbits) {
-
+    if (shm()->detType == MYTHEN3) {
+        throw RuntimeError("Mythen3 should have called with 3 energies");
+    }
     // verify e_eV exists in trimEneregies[]
     if (shm()->trimEnergies.empty() || (e_eV < shm()->trimEnergies.front()) ||
         (e_eV > shm()->trimEnergies.back())) {
@@ -214,21 +216,9 @@ void Module::setThresholdEnergy(int e_eV, detectorSettings isettings,
         myMod.iodelay = myMod1.iodelay;
         myMod.tau =
             linearInterpolation(e_eV, trim1, trim2, myMod1.tau, myMod2.tau);
-        // m3, reg is used for gaincaps
-        if (shm()->detType == MYTHEN3) {
-            if (myMod1.reg != myMod2.reg) {
-                throw RuntimeError(
-                    "setThresholdEnergyAndSettings: gaincaps do not "
-                    "match between files");
-            }
-            myMod.reg = myMod1.reg;
-        }
-    }
-    // m3, reg is used for gaincaps
-    if (shm()->detType != MYTHEN3) {
-        myMod.reg = isettings;
     }
 
+    myMod.reg = isettings;
     myMod.eV[0] = e_eV;
     setModule(myMod, trimbits);
     if (getSettings() != isettings) {
@@ -243,42 +233,35 @@ void Module::setThresholdEnergy(int e_eV, detectorSettings isettings,
 
 void Module::setAllThresholdEnergy(std::array<int, 3> e_eV,
                                    detectorSettings isettings, bool trimbits) {
-    // only mythen3
+    if (shm()->detType != MYTHEN3) {
+        throw RuntimeError("This detector should have called with 3 energies");
+    }
     if (shm()->trimEnergies.empty()) {
         throw RuntimeError(
-            "Trim energies have not been defined for this module yet!");
+            "Trim energies have not been defined for this module yet! Use trimen.");
     }
 
-    auto counters = getSetBits(getCounterMask());
-    enum mythen3_DacIndex {
-        M_VCASSH,
-        M_VTH2,
-        M_VRSHAPER,
-        M_VRSHAPER_N,
-        M_VIPRE_OUT,
-        M_VTH3,
-        M_VTH1,
-        M_VICIN,
-        M_VCAS,
-        M_VRPREAMP,
-        M_VCAL_N,
-        M_VIPRE,
-        M_VISHAPER,
-        M_VCAL_P,
-        M_VTRIM,
-        M_VDCSH
-    };
-
-    std::vector<sls_detector_module> myMods{shm()->detType};
     std::vector<int> energy(e_eV.begin(), e_eV.end());
     // if all energies are same
     if (allEqualTo(energy, energy[0])) {
+        if (energy[0] == -1) {
+           throw RuntimeError("Every energy provided to set threshold energy is -1. Typo?"); 
+        }
         energy.resize(1);
     }
-    myMods.resize(energy.size());
 
     // for each threshold
+    std::vector<sls_detector_module> myMods;
     for (size_t i = 0; i < energy.size(); ++i) {
+        if (energy[i] == -1) {
+            sls_detector_module mod = getModule();
+            myMods.push_back(mod);
+            continue;
+        }
+
+        sls_detector_module mod{shm()->detType};
+        myMods.push_back(mod);
+
         // don't interpolate
         if (shm()->trimEnergies.anyEqualTo(energy[i])) {
             std::string settingsfname =
@@ -324,10 +307,9 @@ void Module::setAllThresholdEnergy(std::array<int, 3> e_eV,
 
             myMods[i] = interpolateTrim(&myMod1, &myMod2, energy[i], trim1,
                                         trim2, trimbits);
-            // gaincaps
+            // csr
             if (myMod1.reg != myMod2.reg) {
-                throw RuntimeError("setAllThresholdEnergy: gaincaps do not "
-                                   "match between files for energy (eV) " +
+                throw RuntimeError("setAllThresholdEnergy: chip shift register values do not match between files for energy (eV) " +
                                    std::to_string(energy[i]));
             }
             myMods[i].reg = myMod1.reg;
@@ -337,8 +319,11 @@ void Module::setAllThresholdEnergy(std::array<int, 3> e_eV,
     sls_detector_module myMod{shm()->detType};
     myMod = myMods[0];
 
+    
     // if multiple thresholds, combine
     if (myMods.size() > 1) {
+        auto counters = getSetBits(getCounterMask());
+
 
         // average vtrim of enabled counters
         int sum = 0;
@@ -377,50 +362,15 @@ void Module::setAllThresholdEnergy(std::array<int, 3> e_eV,
         for (int i = 0; i < myMod.nchan; ++i) {
             myMod.chanregs[i] = myMods[i % 3].chanregs[i];
         }
-        // gain caps
+        // csr
         if (myMods[0].reg != myMods[1].reg || myMods[1].reg != myMods[2].reg) {
-            throw RuntimeError("setAllThresholdEnergy: gaincaps do not "
-                               "match between files for all energies");
+            throw RuntimeError("setAllThresholdEnergy: chip shift register values do not match between files for all energies");
         }
     }
 
-    myMod.reg = isettings;
     std::copy(e_eV.begin(), e_eV.end(), myMod.eV);
     LOG(logDEBUG) << "ev:" << ToString(myMod.eV);
 
-    // check for trimbits that are out of range
-    bool out_of_range = false;
-    for (int i = 0; i != myMod.nchan; ++i) {
-        if (myMod.chanregs[i] < 0) {
-            myMod.chanregs[i] = 0;
-            out_of_range = true;
-        } else if (myMod.chanregs[i] > 63) {
-            myMod.chanregs[i] = 63;
-            out_of_range = true;
-        }
-    }
-    if (out_of_range) {
-        LOG(logWARNING)
-            << "Some trimbits were out of range after interpolation, these "
-               "have been replaced with 0 or 63.";
-    }
-
-    // check dacs
-    out_of_range = false;
-    for (auto dac : {M_VTRIM, M_VTH1, M_VTH2, M_VTH3}) {
-        if (myMod.dacs[dac] < 600) {
-            myMod.dacs[dac] = 600;
-            out_of_range = true;
-        } else if (myMod.dacs[dac] > 2400) {
-            myMod.dacs[dac] = 2400;
-            out_of_range = true;
-        }
-    }
-    if (out_of_range) {
-        LOG(logWARNING) << "Some dacs were out of range after interpolation, "
-                           "these have been replaced with 600 or 2400.";
-    }
-
     setModule(myMod, trimbits);
     if (getSettings() != isettings) {
         throw RuntimeError("setThresholdEnergyAndSettings: Could not set "
@@ -437,7 +387,7 @@ std::string Module::getSettingsDir() const {
 }
 
 std::string Module::setSettingsDir(const std::string &dir) {
-    sls::strcpy_safe(shm()->settingsDir, dir.c_str());
+    strcpy_safe(shm()->settingsDir, dir.c_str());
     return shm()->settingsDir;
 }
 
@@ -462,6 +412,27 @@ void Module::loadTrimbits(const std::string &fname) {
     }
 }
 
+void Module::saveTrimbits(const std::string &fname) {
+    // find specific file if it has detid in file name (.snxxx)
+    if (shm()->detType == EIGER || shm()->detType == MYTHEN3) {
+        std::ostringstream ostfn;
+        ostfn << fname;
+        int moduleIdWidth = 3;
+        if (shm()->detType == MYTHEN3) {
+            moduleIdWidth = 4;
+        }
+        if ((fname.find(".sn") == std::string::npos) &&
+            (fname.find(".trim") == std::string::npos)) {
+            ostfn << ".sn" << std::setfill('0') << std::setw(moduleIdWidth)
+                  << std::dec << getModuleId();
+        }
+        auto myMod = getModule();
+        saveSettingsFile(myMod, ostfn.str());
+    } else {
+        throw RuntimeError("not implemented for this detector");
+    }
+}
+
 int Module::getAllTrimbits() const {
     return sendToDetector<int>(F_SET_ALL_TRIMBITS, GET_FLAG);
 }
@@ -888,7 +859,7 @@ std::vector<int64_t> Module::getFramesCaughtByReceiver() const {
             std::vector<int64_t> retval(nports);
             client.Receive(retval);
             LOG(logDEBUG1) << "Frames caught of Receiver" << moduleIndex << ": "
-                           << sls::ToString(retval);
+                           << ToString(retval);
             return retval;
         }
     }
@@ -910,7 +881,7 @@ std::vector<int64_t> Module::getNumMissingPackets() const {
             std::vector<int64_t> retval(nports);
             client.Receive(retval);
             LOG(logDEBUG1) << "Missing packets of Receiver" << moduleIndex
-                           << ": " << sls::ToString(retval);
+                           << ": " << ToString(retval);
             return retval;
         }
     }
@@ -932,7 +903,7 @@ std::vector<int64_t> Module::getReceiverCurrentFrameIndex() const {
             std::vector<int64_t> retval(nports);
             client.Receive(retval);
             LOG(logDEBUG1) << "Frame index of Receiver" << moduleIndex << ": "
-                           << sls::ToString(retval);
+                           << ToString(retval);
             return retval;
         }
     }
@@ -996,8 +967,8 @@ void Module::selectUDPInterface(int n) {
     sendToDetector(F_SET_INTERFACE_SEL, n, nullptr);
 }
 
-sls::IpAddr Module::getSourceUDPIP() const {
-    return sendToDetector<sls::IpAddr>(F_GET_SOURCE_UDP_IP);
+IpAddr Module::getSourceUDPIP() const {
+    return sendToDetector<IpAddr>(F_GET_SOURCE_UDP_IP);
 }
 
 void Module::setSourceUDPIP(const IpAddr ip) {
@@ -1007,8 +978,8 @@ void Module::setSourceUDPIP(const IpAddr ip) {
     sendToDetector(F_SET_SOURCE_UDP_IP, ip, nullptr);
 }
 
-sls::IpAddr Module::getSourceUDPIP2() const {
-    return sendToDetector<sls::IpAddr>(F_GET_SOURCE_UDP_IP2);
+IpAddr Module::getSourceUDPIP2() const {
+    return sendToDetector<IpAddr>(F_GET_SOURCE_UDP_IP2);
 }
 
 void Module::setSourceUDPIP2(const IpAddr ip) {
@@ -1018,33 +989,33 @@ void Module::setSourceUDPIP2(const IpAddr ip) {
     sendToDetector(F_SET_SOURCE_UDP_IP2, ip, nullptr);
 }
 
-sls::MacAddr Module::getSourceUDPMAC() const {
-    return sendToDetector<sls::MacAddr>(F_GET_SOURCE_UDP_MAC);
+MacAddr Module::getSourceUDPMAC() const {
+    return sendToDetector<MacAddr>(F_GET_SOURCE_UDP_MAC);
 }
 
-void Module::setSourceUDPMAC(const sls::MacAddr mac) {
+void Module::setSourceUDPMAC(const MacAddr mac) {
     if (mac == 0) {
         throw RuntimeError("Invalid source udp mac address");
     }
     sendToDetector(F_SET_SOURCE_UDP_MAC, mac, nullptr);
 }
 
-sls::MacAddr Module::getSourceUDPMAC2() const {
-    return sendToDetector<sls::MacAddr>(F_GET_SOURCE_UDP_MAC2);
+MacAddr Module::getSourceUDPMAC2() const {
+    return sendToDetector<MacAddr>(F_GET_SOURCE_UDP_MAC2);
 }
 
-void Module::setSourceUDPMAC2(const sls::MacAddr mac) {
+void Module::setSourceUDPMAC2(const MacAddr mac) {
     if (mac == 0) {
         throw RuntimeError("Invalid source udp mac address2");
     }
     sendToDetector(F_SET_SOURCE_UDP_MAC2, mac, nullptr);
 }
 
-sls::UdpDestination Module::getDestinationUDPList(const uint32_t entry) const {
-    return sendToDetector<sls::UdpDestination>(F_GET_DEST_UDP_LIST, entry);
+UdpDestination Module::getDestinationUDPList(const uint32_t entry) const {
+    return sendToDetector<UdpDestination>(F_GET_DEST_UDP_LIST, entry);
 }
 
-void Module::setDestinationUDPList(const sls::UdpDestination dest) {
+void Module::setDestinationUDPList(const UdpDestination dest) {
     // set them in the default way so the receivers are also set up
     if (dest.entry == 0) {
         if (dest.port != 0) {
@@ -1084,8 +1055,8 @@ void Module::setFirstUDPDestination(const int value) {
     sendToDetector(F_SET_UDP_FIRST_DEST, value, nullptr);
 }
 
-sls::IpAddr Module::getDestinationUDPIP() const {
-    return sendToDetector<sls::IpAddr>(F_GET_DEST_UDP_IP);
+IpAddr Module::getDestinationUDPIP() const {
+    return sendToDetector<IpAddr>(F_GET_DEST_UDP_IP);
 }
 
 void Module::setDestinationUDPIP(const IpAddr ip) {
@@ -1098,7 +1069,7 @@ void Module::setDestinationUDPIP(const IpAddr ip) {
     }
     sendToDetector(F_SET_DEST_UDP_IP, ip, nullptr);
     if (shm()->useReceiverFlag) {
-        sls::MacAddr retval(0LU);
+        MacAddr retval(0LU);
         sendToReceiver(F_SET_RECEIVER_UDP_IP, ip, retval);
         LOG(logINFO) << "Setting destination udp mac of Module " << moduleIndex
                      << " to " << retval;
@@ -1106,8 +1077,8 @@ void Module::setDestinationUDPIP(const IpAddr ip) {
     }
 }
 
-sls::IpAddr Module::getDestinationUDPIP2() const {
-    return sendToDetector<sls::IpAddr>(F_GET_DEST_UDP_IP2);
+IpAddr Module::getDestinationUDPIP2() const {
+    return sendToDetector<IpAddr>(F_GET_DEST_UDP_IP2);
 }
 
 void Module::setDestinationUDPIP2(const IpAddr ip) {
@@ -1121,7 +1092,7 @@ void Module::setDestinationUDPIP2(const IpAddr ip) {
     }
     sendToDetector(F_SET_DEST_UDP_IP2, ip, nullptr);
     if (shm()->useReceiverFlag) {
-        sls::MacAddr retval(0LU);
+        MacAddr retval(0LU);
         sendToReceiver(F_SET_RECEIVER_UDP_IP2, ip, retval);
         LOG(logINFO) << "Setting destination udp mac2 of Module " << moduleIndex
                      << " to " << retval;
@@ -1129,8 +1100,8 @@ void Module::setDestinationUDPIP2(const IpAddr ip) {
     }
 }
 
-sls::MacAddr Module::getDestinationUDPMAC() const {
-    return sendToDetector<sls::MacAddr>(F_GET_DEST_UDP_MAC);
+MacAddr Module::getDestinationUDPMAC() const {
+    return sendToDetector<MacAddr>(F_GET_DEST_UDP_MAC);
 }
 
 void Module::setDestinationUDPMAC(const MacAddr mac) {
@@ -1140,8 +1111,8 @@ void Module::setDestinationUDPMAC(const MacAddr mac) {
     sendToDetector(F_SET_DEST_UDP_MAC, mac, nullptr);
 }
 
-sls::MacAddr Module::getDestinationUDPMAC2() const {
-    return sendToDetector<sls::MacAddr>(F_GET_DEST_UDP_MAC2);
+MacAddr Module::getDestinationUDPMAC2() const {
+    return sendToDetector<MacAddr>(F_GET_DEST_UDP_MAC2);
 }
 
 void Module::setDestinationUDPMAC2(const MacAddr mac) {
@@ -1273,19 +1244,19 @@ void Module::setReceiverHostname(const std::string &receiverIP) {
 
     if (receiverIP == "none") {
         memset(shm()->rxHostname, 0, MAX_STR_LENGTH);
-        sls::strcpy_safe(shm()->rxHostname, "none");
+        strcpy_safe(shm()->rxHostname, "none");
         shm()->useReceiverFlag = false;
         return;
     }
 
     // start updating
     std::string host = receiverIP;
-    auto res = sls::split(host, ':');
+    auto res = split(host, ':');
     if (res.size() > 1) {
         host = res[0];
         shm()->rxTCPPort = std::stoi(res[1]);
     }
-    sls::strcpy_safe(shm()->rxHostname, host.c_str());
+    strcpy_safe(shm()->rxHostname, host.c_str());
     shm()->useReceiverFlag = true;
     checkReceiverVersionCompatibility();
 
@@ -1301,7 +1272,7 @@ void Module::setReceiverHostname(const std::string &receiverIP) {
     memset(retval.hostname, 0, sizeof(retval.hostname));
     strcpy_safe(retval.hostname, shm()->hostname);
 
-    sls::MacAddr retvals[2];
+    MacAddr retvals[2];
     sendToReceiver(F_SETUP_RECEIVER, retval, retvals);
     // update Modules with dest mac
     if (retval.udp_dstmac == 0 && retvals[0] != 0) {
@@ -1387,8 +1358,8 @@ void Module::setReceiverLock(bool lock) {
     sendToReceiver<int>(F_LOCK_RECEIVER, static_cast<int>(lock));
 }
 
-sls::IpAddr Module::getReceiverLastClientIP() const {
-    return sendToReceiver<sls::IpAddr>(F_GET_LAST_RECEIVER_CLIENT_IP);
+IpAddr Module::getReceiverLastClientIP() const {
+    return sendToReceiver<IpAddr>(F_GET_LAST_RECEIVER_CLIENT_IP);
 }
 
 std::array<pid_t, NUM_RX_THREAD_IDS> Module::getReceiverThreadIds() const {
@@ -1404,6 +1375,19 @@ void Module::setRxArping(bool enable) {
     sendToReceiver(F_SET_RECEIVER_ARPING, static_cast<int>(enable), nullptr);
 }
 
+defs::ROI Module::getRxROI() const {
+    return sendToReceiver<slsDetectorDefs::ROI>(F_RECEIVER_GET_RECEIVER_ROI);
+}
+
+void Module::setRxROI(const slsDetectorDefs::ROI arg) {
+    LOG(logDEBUG) << moduleIndex << ": " << arg;
+    sendToReceiver(F_RECEIVER_SET_RECEIVER_ROI, arg, nullptr);
+}
+
+void Module::setRxROIMetadata(const slsDetectorDefs::ROI arg) {
+    sendToReceiver(F_RECEIVER_SET_RECEIVER_ROI_METADATA, arg, nullptr);
+}
+
 // File
 slsDetectorDefs::fileFormat Module::getFileFormat() const {
     return sendToReceiver<fileFormat>(F_GET_RECEIVER_FILE_FORMAT);
@@ -1424,7 +1408,7 @@ void Module::setFilePath(const std::string &path) {
         throw RuntimeError("Cannot set empty file path");
     }
     char args[MAX_STR_LENGTH]{};
-    sls::strcpy_safe(args, path.c_str());
+    strcpy_safe(args, path.c_str());
     sendToReceiver(F_SET_RECEIVER_FILE_PATH, args, nullptr);
 }
 
@@ -1439,7 +1423,7 @@ void Module::setFileName(const std::string &fname) {
         throw RuntimeError("Cannot set empty file name prefix");
     }
     char args[MAX_STR_LENGTH]{};
-    sls::strcpy_safe(args, fname.c_str());
+    strcpy_safe(args, fname.c_str());
     sendToReceiver(F_SET_RECEIVER_FILE_NAME, args, nullptr);
 }
 
@@ -1536,11 +1520,11 @@ void Module::setReceiverStreamingPort(int port) {
     sendToReceiver(F_SET_RECEIVER_STREAMING_PORT, port, nullptr);
 }
 
-sls::IpAddr Module::getReceiverStreamingIP() const {
-    return sendToReceiver<sls::IpAddr>(F_GET_RECEIVER_STREAMING_SRC_IP);
+IpAddr Module::getReceiverStreamingIP() const {
+    return sendToReceiver<IpAddr>(F_GET_RECEIVER_STREAMING_SRC_IP);
 }
 
-void Module::setReceiverStreamingIP(const sls::IpAddr ip) {
+void Module::setReceiverStreamingIP(const IpAddr ip) {
     if (ip == 0) {
         throw RuntimeError("Invalid receiver zmq ip address");
     }
@@ -1555,9 +1539,9 @@ int Module::getClientStreamingPort() const { return shm()->zmqport; }
 
 void Module::setClientStreamingPort(int port) { shm()->zmqport = port; }
 
-sls::IpAddr Module::getClientStreamingIP() const { return shm()->zmqip; }
+IpAddr Module::getClientStreamingIP() const { return shm()->zmqip; }
 
-void Module::setClientStreamingIP(const sls::IpAddr ip) {
+void Module::setClientStreamingIP(const IpAddr ip) {
     if (ip == 0) {
         throw RuntimeError("Invalid client zmq ip address");
     }
@@ -1784,6 +1768,9 @@ int Module::getNumberOfAdditionalStorageCells() const {
 
 void Module::setNumberOfAdditionalStorageCells(int value) {
     sendToDetector(F_SET_NUM_ADDITIONAL_STORAGE_CELLS, value, nullptr);
+    if (shm()->useReceiverFlag) {
+        sendToReceiver(F_SET_RECEIVER_NUM_ADD_STORAGE_CELLS, value, nullptr);
+    }
 }
 
 int Module::getStorageCellStart() const {
@@ -1831,7 +1818,7 @@ void Module::setROI(slsDetectorDefs::ROI arg) {
     }
     sendToDetector(F_SET_ROI, arg, nullptr);
     if (shm()->useReceiverFlag) {
-        sendToReceiver(F_RECEIVER_SET_ROI, arg, nullptr);
+        sendToReceiver(F_RECEIVER_SET_DETECTOR_ROI, arg, nullptr);
     }
 }
 
@@ -2212,10 +2199,8 @@ uint32_t Module::getCounterMask() const {
 }
 
 void Module::setCounterMask(uint32_t countermask) {
-    LOG(logDEBUG1) << "Setting Counter mask to " << countermask;
     sendToDetector(F_SET_COUNTER_MASK, countermask, nullptr);
     if (shm()->useReceiverFlag) {
-        LOG(logDEBUG1) << "Sending Reciver counter mask: " << countermask;
         sendToReceiver(F_RECEIVER_SET_COUNTER_MASK, countermask, nullptr);
     }
 }
@@ -2256,11 +2241,55 @@ int Module::getChipStatusRegister() const {
 }
 
 void Module::setGainCaps(int caps) {
-    sendToDetector<int>(F_SET_GAIN_CAPS, caps);
+    sendToDetector(F_SET_GAIN_CAPS, caps, nullptr);
 }
 
 int Module::getGainCaps() { return sendToDetector<int>(F_GET_GAIN_CAPS); }
 
+defs::polarity Module::getPolarity() const {
+    return sendToDetector<defs::polarity>(F_GET_POLARITY);
+}
+
+void Module::setPolarity(const defs::polarity value) {
+    sendToDetector(F_SET_POLARITY, static_cast<int>(value), nullptr);
+}
+
+bool Module::getInterpolation() const {
+    return sendToDetector<int>(F_GET_INTERPOLATION);
+}
+
+void Module::setInterpolation(const bool enable) {
+    sendToDetector(F_SET_INTERPOLATION, static_cast<int>(enable), nullptr);
+    int mask = getCounterMask();
+    if (shm()->useReceiverFlag) {
+        sendToReceiver(F_RECEIVER_SET_COUNTER_MASK, mask, nullptr);
+    }
+}
+
+bool Module::getPumpProbe() const {
+    return sendToDetector<int>(F_GET_PUMP_PROBE);
+}
+
+void Module::setPumpProbe(const bool enable) {
+    sendToDetector(F_SET_PUMP_PROBE, static_cast<int>(enable), nullptr);
+}
+
+bool Module::getAnalogPulsing() const {
+    return sendToDetector<int>(F_GET_ANALOG_PULSING);
+}
+
+void Module::setAnalogPulsing(const bool enable) {
+    sendToDetector(F_SET_ANALOG_PULSING, static_cast<int>(enable), nullptr);
+}
+
+bool Module::getDigitalPulsing() const {
+    return sendToDetector<int>(F_GET_DIGITAL_PULSING);
+}
+
+void Module::setDigitalPulsing(const bool enable) {
+    sendToDetector(F_SET_DIGITAL_PULSING, static_cast<int>(enable), nullptr);
+}
+
 // CTB / Moench Specific
 int Module::getNumberOfAnalogSamples() const {
     return sendToDetector<int>(F_GET_NUM_ANALOG_SAMPLES);
@@ -2317,12 +2346,9 @@ int Module::getNumberOfDigitalSamples() const {
 }
 
 void Module::setNumberOfDigitalSamples(int value) {
-    LOG(logDEBUG1) << "Setting number of digital samples to " << value;
     sendToDetector(F_SET_NUM_DIGITAL_SAMPLES, value, nullptr);
     updateNumberOfChannels(); // depends on samples and adcmask
     if (shm()->useReceiverFlag) {
-        LOG(logDEBUG1) << "Sending number of digital samples to Receiver: "
-                       << value;
         sendToReceiver(F_RECEIVER_SET_NUM_DIGITAL_SAMPLES, value, nullptr);
     }
 }
@@ -2360,18 +2386,18 @@ void Module::setExternalSampling(bool value) {
 }
 
 std::vector<int> Module::getReceiverDbitList() const {
-    return sendToReceiver<sls::StaticVector<int, MAX_RX_DBIT>>(
+    return sendToReceiver<StaticVector<int, MAX_RX_DBIT>>(
         F_GET_RECEIVER_DBIT_LIST);
 }
 
 void Module::setReceiverDbitList(std::vector<int> list) {
     LOG(logDEBUG1) << "Setting Receiver Dbit List";
     if (list.size() > 64) {
-        throw sls::RuntimeError("Dbit list size cannot be greater than 64\n");
+        throw RuntimeError("Dbit list size cannot be greater than 64\n");
     }
     for (auto &it : list) {
         if (it < 0 || it > 63) {
-            throw sls::RuntimeError(
+            throw RuntimeError(
                 "Dbit list value must be between 0 and 63\n");
         }
     }
@@ -2379,7 +2405,7 @@ void Module::setReceiverDbitList(std::vector<int> list) {
     auto last = std::unique(begin(list), end(list));
     list.erase(last, list.end());
 
-    sls::StaticVector<int, MAX_RX_DBIT> arg = list;
+    StaticVector<int, MAX_RX_DBIT> arg = list;
     sendToReceiver(F_SET_RECEIVER_DBIT_LIST, arg, nullptr);
 }
 
@@ -2568,7 +2594,7 @@ void Module::setAdditionalJsonHeader(
 
 std::string Module::getAdditionalJsonParameter(const std::string &key) const {
     char arg[SHORT_STR_LENGTH]{};
-    sls::strcpy_safe(arg, key.c_str());
+    strcpy_safe(arg, key.c_str());
     char retval[SHORT_STR_LENGTH]{};
     sendToReceiver(F_GET_ADDITIONAL_JSON_PARAMETER, arg, retval);
     return retval;
@@ -2584,8 +2610,8 @@ void Module::setAdditionalJsonParameter(const std::string &key,
             "Key cannot be empty. Both can have max 2 characters");
     }
     char args[2][SHORT_STR_LENGTH]{};
-    sls::strcpy_safe(args[0], key.c_str());
-    sls::strcpy_safe(args[1], value.c_str());
+    strcpy_safe(args[0], key.c_str());
+    strcpy_safe(args[1], value.c_str());
     sendToReceiver(F_SET_ADDITIONAL_JSON_PARAMETER, args, nullptr);
 }
 
@@ -2611,28 +2637,6 @@ void Module::programFPGA(std::vector<char> buffer,
 
 void Module::resetFPGA() { sendToDetector(F_RESET_FPGA); }
 
-void Module::copyDetectorServer(const std::string &fname,
-                                const std::string &hostname) {
-    char args[2][MAX_STR_LENGTH]{};
-    sls::strcpy_safe(args[0], fname.c_str());
-    sls::strcpy_safe(args[1], hostname.c_str());
-    LOG(logINFO) << "Module " << moduleIndex << " (" << shm()->hostname
-                 << "): Sending detector server " << args[0] << " from host "
-                 << args[1];
-    auto client = DetectorSocket(shm()->hostname, shm()->controlPort);
-    client.Send(F_COPY_DET_SERVER);
-    client.Send(args);
-    if (client.Receive<int>() == FAIL) {
-        std::cout << '\n';
-        std::ostringstream os;
-        os << "Module " << moduleIndex << " (" << shm()->hostname << ")"
-           << " returned error: " << client.readErrorMessage();
-        throw DetectorError(os.str());
-    }
-    LOG(logINFO) << "Module " << moduleIndex << " (" << shm()->hostname
-                 << "): Detector server copied";
-}
-
 void Module::updateDetectorServer(std::vector<char> buffer,
                                   const std::string &serverName) {
     switch (shm()->detType) {
@@ -2759,14 +2763,14 @@ void Module::setLockDetector(bool lock) {
     sendToDetector<int>(F_LOCK_SERVER, static_cast<int>(lock));
 }
 
-sls::IpAddr Module::getLastClientIP() const {
-    return sendToDetector<sls::IpAddr>(F_GET_LAST_CLIENT_IP);
+IpAddr Module::getLastClientIP() const {
+    return sendToDetector<IpAddr>(F_GET_LAST_CLIENT_IP);
 }
 
 std::string Module::executeCommand(const std::string &cmd) {
     char arg[MAX_STR_LENGTH]{};
     char retval[MAX_STR_LENGTH]{};
-    sls::strcpy_safe(arg, cmd.c_str());
+    strcpy_safe(arg, cmd.c_str());
     LOG(logINFO) << "Module " << moduleIndex << " (" << shm()->hostname
                  << "): Sending command " << cmd;
     auto client = DetectorSocket(shm()->hostname, shm()->controlPort);
@@ -3171,20 +3175,20 @@ Ret Module::sendToReceiver(int fnum, const Arg &args) {
 
 slsDetectorDefs::detectorType Module::getDetectorTypeFromShm(int det_id,
                                                              bool verify) {
-    if (!shm.IsExisting()) {
-        throw SharedMemoryError("Shared memory " + shm.GetName() +
+    if (!shm.exists()) {
+        throw SharedMemoryError("Shared memory " + shm.getName() +
                                 "does not exist.\n Corrupted Multi Shared "
                                 "memory. Please free shared memory.");
     }
 
-    shm.OpenSharedMemory();
+    shm.openSharedMemory(verify);
     if (verify && shm()->shmversion != MODULE_SHMVERSION) {
         std::ostringstream ss;
         ss << "Single shared memory (" << det_id << "-" << moduleIndex
            << ":)version mismatch (expected 0x" << std::hex << MODULE_SHMVERSION
            << " but got 0x" << shm()->shmversion << ")" << std::dec
            << ". Clear Shared memory to continue.";
-        shm.UnmapSharedMemory();
+        shm.unmapSharedMemory();
         throw SharedMemoryError(ss.str());
     }
     return shm()->detType;
@@ -3192,11 +3196,11 @@ slsDetectorDefs::detectorType Module::getDetectorTypeFromShm(int det_id,
 
 void Module::initSharedMemory(detectorType type, int det_id, bool verify) {
     shm = SharedMemory<sharedModule>(det_id, moduleIndex);
-    if (!shm.IsExisting()) {
-        shm.CreateSharedMemory();
+    if (!shm.exists()) {
+        shm.createSharedMemory();
         initializeModuleStructure(type);
     } else {
-        shm.OpenSharedMemory();
+        shm.openSharedMemory(verify);
         if (verify && shm()->shmversion != MODULE_SHMVERSION) {
             std::ostringstream ss;
             ss << "Single shared memory (" << det_id << "-" << moduleIndex
@@ -3216,8 +3220,8 @@ void Module::initializeModuleStructure(detectorType type) {
     shm()->numberOfModule.y = 0;
     shm()->controlPort = DEFAULT_PORTNO;
     shm()->stopPort = DEFAULT_PORTNO + 1;
-    sls::strcpy_safe(shm()->settingsDir, getenv("HOME"));
-    sls::strcpy_safe(shm()->rxHostname, "none");
+    strcpy_safe(shm()->settingsDir, getenv("HOME"));
+    strcpy_safe(shm()->rxHostname, "none");
     shm()->rxTCPPort = DEFAULT_PORTNO + 2;
     shm()->useReceiverFlag = false;
     shm()->numUDPInterfaces = 1;
@@ -3272,7 +3276,75 @@ void Module::checkReceiverVersionCompatibility() {
     sendToReceiver(F_RECEIVER_CHECK_VERSION, int64_t(APIRECEIVER), nullptr);
 }
 
-int Module::sendModule(sls_detector_module *myMod, sls::ClientSocket &client) {
+void Module::setModule(sls_detector_module &module, bool trimbits) {
+    LOG(logDEBUG1) << "Setting module with trimbits:" << trimbits;
+    // to exclude trimbits
+    if (!trimbits) {
+        module.nchan = 0;
+        module.nchip = 0;
+    }
+    // validate dacs and trimbits
+    if (shm()->detType == MYTHEN3) {
+        // check for trimbits that are out of range
+        bool out_of_range = false;
+        for (int i = 0; i != module.nchan; ++i) {
+            if (module.chanregs[i] < 0) {
+                module.chanregs[i] = 0;
+                out_of_range = true;
+            } else if (module.chanregs[i] > 63) {
+                module.chanregs[i] = 63;
+                out_of_range = true;
+            }
+        }
+        if (out_of_range) {
+            LOG(logWARNING)
+                << "Some trimbits were out of range, these have been replaced with 0 or 63.";
+        }
+        // check dacs
+        out_of_range = false;
+        for (int i = 0; i != module.ndac; ++i) {
+            int dacMin = 0;
+            int dacMax = 2800;
+            if (i == M_VTH1 || i == M_VTH2 || i == M_VTH3) {
+                dacMin = 200;
+                dacMax = 2400;
+            }
+            if (module.dacs[i] < dacMin) {
+                module.dacs[i] = dacMin;
+                out_of_range = true;
+            } else if (module.dacs[i] > dacMax) {
+                module.dacs[i] = dacMax;
+                out_of_range = true;
+            }
+        }
+        if (out_of_range) {
+            LOG(logWARNING) << "Some dacs were out of range, "
+                            "these have been replaced with 0/200 or 2800/2400.";
+        }
+    }
+    auto client = DetectorSocket(shm()->hostname, shm()->controlPort);
+    client.Send(F_SET_MODULE);
+    sendModule(&module, client);
+    if (client.Receive<int>() == FAIL) {
+        throw DetectorError("Module " + std::to_string(moduleIndex) +
+                            " returned error: " + client.readErrorMessage());
+    }
+}
+
+sls_detector_module Module::getModule() {
+    LOG(logDEBUG1) << "Getting module";
+    sls_detector_module module(shm()->detType);
+    auto client = DetectorSocket(shm()->hostname, shm()->controlPort);
+    client.Send(F_GET_MODULE);
+    if (client.Receive<int>() == FAIL) {
+        throw DetectorError("Module " + std::to_string(moduleIndex) +
+                            " returned error: " + client.readErrorMessage());
+    }
+    receiveModule(&module, client);
+    return module;
+}
+
+void Module::sendModule(sls_detector_module *myMod, ClientSocket &client) {
     constexpr TLogLevel level = logDEBUG1;
     LOG(level) << "Sending Module";
     int ts = 0;
@@ -3315,35 +3387,48 @@ int Module::sendModule(sls_detector_module *myMod, sls::ClientSocket &client) {
     ts += n;
     LOG(level) << "dacs sent. " << n << " bytes";
 
-    if (shm()->detType == EIGER || shm()->detType == MYTHEN3) {
-        n = client.Send(myMod->chanregs, sizeof(int) * (myMod->nchan));
-        ts += n;
-        LOG(level) << "channels sent. " << n << " bytes";
+    n = client.Send(myMod->chanregs, sizeof(int) * (myMod->nchan));
+    ts += n;
+    LOG(level) << "channels sent. " << n << " bytes";
+
+    int expectedBytesSent = sizeof(sls_detector_module) - sizeof(myMod->dacs) - sizeof(myMod->chanregs) + (myMod->ndac * sizeof(int)) + (myMod->nchan * sizeof(int));
+
+    if (expectedBytesSent != ts) {
+        throw RuntimeError("Module size "  + std::to_string(ts) + " sent does not match expected size to be sent " + std::to_string(expectedBytesSent));
     }
-    return ts;
 }
 
-void Module::setModule(sls_detector_module &module, bool trimbits) {
-    LOG(logDEBUG1) << "Setting module with trimbits:" << trimbits;
-    // to exclude trimbits
-    if (!trimbits) {
-        module.nchan = 0;
-        module.nchip = 0;
-    }
-    auto client = DetectorSocket(shm()->hostname, shm()->controlPort);
-    client.Send(F_SET_MODULE);
-    sendModule(&module, client);
-    if (client.Receive<int>() == FAIL) {
-        throw DetectorError("Module " + std::to_string(moduleIndex) +
-                            " returned error: " + client.readErrorMessage());
-    }
+
+void Module::receiveModule(sls_detector_module *myMod, ClientSocket &client) {
+    constexpr TLogLevel level = logDEBUG1;
+    LOG(level) << "Receiving Module";
+    myMod->serialnumber = client.Receive<int>();
+    LOG(level) << "serialno: " << myMod->serialnumber;
+    myMod->nchan = client.Receive<int>();
+    LOG(level) << "nchan: " << myMod->nchan;
+    myMod->nchip = client.Receive<int>();
+    LOG(level) << "nchip: " << myMod->nchip;
+    myMod->ndac = client.Receive<int>();
+    LOG(level) << "ndac: " << myMod->ndac;
+    myMod->reg = client.Receive<int>();
+    LOG(level) << "reg: " << myMod->reg;
+    myMod->iodelay = client.Receive<int>();
+    LOG(level) << "iodelay: " << myMod->iodelay;
+    myMod->tau = client.Receive<int>();
+    LOG(level) << "tau: " << myMod->tau;
+    client.Receive(myMod->eV);
+    LOG(level) << "eV: " << ToString(myMod->eV);
+    client.Receive(myMod->dacs, sizeof(int) * (myMod->ndac));
+    LOG(level) << myMod->ndac << " dacs received";
+    client.Receive(myMod->chanregs, sizeof(int) * (myMod->nchan));
+    LOG(level) << myMod->nchan << " chans received";
 }
 
 void Module::updateReceiverStreamingIP() {
     auto ip = getReceiverStreamingIP();
     if (ip == 0) {
         // Hostname could be ip try to decode otherwise look up the hostname
-        ip = sls::IpAddr{shm()->rxHostname};
+        ip = IpAddr{shm()->rxHostname};
         if (ip == 0) {
             ip = HostnameToIp(shm()->rxHostname);
         }
@@ -3368,42 +3453,6 @@ sls_detector_module Module::interpolateTrim(sls_detector_module *a,
     }
 
     sls_detector_module myMod{shm()->detType};
-    enum eiger_DacIndex {
-        E_SVP,
-        E_VTR,
-        E_VRF,
-        E_VRS,
-        E_SVN,
-        E_VTGSTV,
-        E_VCMP_LL,
-        E_VCMP_LR,
-        E_CAL,
-        E_VCMP_RL,
-        E_RXB_RB,
-        E_RXB_LB,
-        E_VCMP_RR,
-        E_VCP,
-        E_VCN,
-        E_VIS
-    };
-    enum mythen3_DacIndex {
-        M_VCASSH,
-        M_VTH2,
-        M_VRSHAPER,
-        M_VRSHAPER_N,
-        M_VIPRE_OUT,
-        M_VTH3,
-        M_VTH1,
-        M_VICIN,
-        M_VCAS,
-        M_VRPREAMP,
-        M_VCAL_N,
-        M_VIPRE,
-        M_VISHAPER,
-        M_VCAL_P,
-        M_VTRIM,
-        M_VDCSH
-    };
 
     // create copy and interpolate dac lists
     std::vector<int> dacs_to_copy, dacs_to_interpolate;
@@ -3577,10 +3626,39 @@ sls_detector_module Module::readSettingsFile(const std::string &fname,
     else {
         throw RuntimeError("Not implemented for this detector");
     }
-    LOG(logINFO) << "Settings file loaded: " << fname.c_str();
+    LOG(logINFO) << "Settings file loaded: " << fname;
     return myMod;
 }
 
+void Module::saveSettingsFile(sls_detector_module &myMod, const std::string &fname) {
+    LOG(logDEBUG1) << moduleIndex << ": Saving settings to " << fname;
+    std::ofstream outfile(fname);
+    if (!outfile) {
+        throw RuntimeError("Could not write settings file: " + fname);
+    }
+    switch (shm()->detType) {
+        case MYTHEN3:
+            outfile.write(reinterpret_cast<char *>(&myMod.reg), sizeof(myMod.reg));
+            outfile.write(reinterpret_cast<char *>(myMod.dacs),
+                    sizeof(int) * (myMod.ndac));
+            outfile.write(reinterpret_cast<char *>(myMod.chanregs),
+                        sizeof(int) * (myMod.nchan));
+            break;
+        case EIGER:
+            outfile.write(reinterpret_cast<char *>(myMod.dacs),
+                        sizeof(int) * (myMod.ndac));
+            outfile.write(reinterpret_cast<char *>(&myMod.iodelay),
+                        sizeof(myMod.iodelay));
+            outfile.write(reinterpret_cast<char *>(&myMod.tau), sizeof(myMod.tau));  
+            outfile.write(reinterpret_cast<char *>(myMod.chanregs),
+                            sizeof(int) * (myMod.nchan));   
+            break;   
+        default:
+            throw RuntimeError("Saving settings file is not implemented for this detector.");
+    }
+    LOG(logINFO) << "Settings for " << shm()->hostname << " written to " << fname; 
+}
+
 void Module::sendProgram(bool blackfin, std::vector<char> buffer,
                          const int functionEnum,
                          const std::string &functionType,
@@ -3596,7 +3674,7 @@ void Module::sendProgram(bool blackfin, std::vector<char> buffer,
     client.Send(filesize);
 
     // send checksum
-    std::string checksum = sls::md5_calculate_checksum(buffer.data(), filesize);
+    std::string checksum = md5_calculate_checksum(buffer.data(), filesize);
     LOG(logDEBUG1) << "Checksum:" << checksum;
     char cChecksum[MAX_STR_LENGTH] = {0};
     strcpy(cChecksum, checksum.c_str());

slsDetectorSoftware/src/Module.h

@@ -14,13 +14,13 @@
 #include <map>
 #include <vector>
 
+namespace sls {
+
 class ServerInterface;
 
 #define MODULE_SHMAPIVERSION 0x190726
 #define MODULE_SHMVERSION    0x200402
 
-namespace sls {
-
 /**
  * @short structure allocated in shared memory to store Module settings for
  * IPC and cache
@@ -40,7 +40,7 @@ struct sharedModule {
     int stopPort;
     char settingsDir[MAX_STR_LENGTH];
     /** list of the energies at which the Module has been trimmed  */
-    sls::StaticVector<int, MAX_TRIMEN> trimEnergies;
+    StaticVector<int, MAX_TRIMEN> trimEnergies;
     /**  number of channels per chip */
     slsDetectorDefs::xy nChan;
     slsDetectorDefs::xy nChip;
@@ -52,7 +52,7 @@ struct sharedModule {
     /** Listening tcp port from gui (only data) */
     int zmqport;
     /**  Listening tcp ip address from gui (only data) **/
-    sls::IpAddr zmqip;
+    IpAddr zmqip;
     int numUDPInterfaces;
     /** to inform rxr when stopping rxr */
     bool stoppedFlag;
@@ -114,6 +114,7 @@ class Module : public virtual slsDetectorDefs {
     std::string getSettingsDir() const;
     std::string setSettingsDir(const std::string &dir);
     void loadTrimbits(const std::string &fname);
+    void saveTrimbits(const std::string &fname);
     int getAllTrimbits() const;
     void setAllTrimbits(int val);
     std::vector<int> getTrimEn() const;
@@ -223,28 +224,28 @@ class Module : public virtual slsDetectorDefs {
     void setNumberofUDPInterfaces(int n);
     int getSelectedUDPInterface() const;
     void selectUDPInterface(int n);
-    sls::IpAddr getSourceUDPIP() const;
-    void setSourceUDPIP(const sls::IpAddr ip);
-    sls::IpAddr getSourceUDPIP2() const;
-    void setSourceUDPIP2(const sls::IpAddr ip);
-    sls::MacAddr getSourceUDPMAC() const;
-    void setSourceUDPMAC(const sls::MacAddr mac);
-    sls::MacAddr getSourceUDPMAC2() const;
-    void setSourceUDPMAC2(const sls::MacAddr mac);
-    sls::UdpDestination getDestinationUDPList(const uint32_t entry) const;
-    void setDestinationUDPList(const sls::UdpDestination dest);
+    IpAddr getSourceUDPIP() const;
+    void setSourceUDPIP(const IpAddr ip);
+    IpAddr getSourceUDPIP2() const;
+    void setSourceUDPIP2(const IpAddr ip);
+    MacAddr getSourceUDPMAC() const;
+    void setSourceUDPMAC(const MacAddr mac);
+    MacAddr getSourceUDPMAC2() const;
+    void setSourceUDPMAC2(const MacAddr mac);
+    UdpDestination getDestinationUDPList(const uint32_t entry) const;
+    void setDestinationUDPList(const UdpDestination dest);
     int getNumberofUDPDestinations() const;
     void clearUDPDestinations();
     int getFirstUDPDestination() const;
     void setFirstUDPDestination(const int value);
-    sls::IpAddr getDestinationUDPIP() const;
-    void setDestinationUDPIP(const sls::IpAddr ip);
-    sls::IpAddr getDestinationUDPIP2() const;
-    void setDestinationUDPIP2(const sls::IpAddr ip);
-    sls::MacAddr getDestinationUDPMAC() const;
-    void setDestinationUDPMAC(const sls::MacAddr mac);
-    sls::MacAddr getDestinationUDPMAC2() const;
-    void setDestinationUDPMAC2(const sls::MacAddr mac);
+    IpAddr getDestinationUDPIP() const;
+    void setDestinationUDPIP(const IpAddr ip);
+    IpAddr getDestinationUDPIP2() const;
+    void setDestinationUDPIP2(const IpAddr ip);
+    MacAddr getDestinationUDPMAC() const;
+    void setDestinationUDPMAC(const MacAddr mac);
+    MacAddr getDestinationUDPMAC2() const;
+    void setDestinationUDPMAC2(const MacAddr mac);
     int getDestinationUDPPort() const;
     void setDestinationUDPPort(int udpport);
     int getDestinationUDPPort2() const;
@@ -286,10 +287,13 @@ class Module : public virtual slsDetectorDefs {
     void setReceiverUDPSocketBufferSize(int udpsockbufsize);
     bool getReceiverLock() const;
     void setReceiverLock(bool lock);
-    sls::IpAddr getReceiverLastClientIP() const;
+    IpAddr getReceiverLastClientIP() const;
     std::array<pid_t, NUM_RX_THREAD_IDS> getReceiverThreadIds() const;
     bool getRxArping() const;
     void setRxArping(bool enable);
+    defs::ROI getRxROI() const;
+    void setRxROI(const slsDetectorDefs::ROI arg);
+    void setRxROIMetadata(const slsDetectorDefs::ROI arg);
 
     /**************************************************
      *                                                *
@@ -331,12 +335,12 @@ class Module : public virtual slsDetectorDefs {
     void setReceiverStreamingStartingFrame(int fnum);
     int getReceiverStreamingPort() const;
     void setReceiverStreamingPort(int port);
-    sls::IpAddr getReceiverStreamingIP() const;
-    void setReceiverStreamingIP(const sls::IpAddr ip);
+    IpAddr getReceiverStreamingIP() const;
+    void setReceiverStreamingIP(const IpAddr ip);
     int getClientStreamingPort() const;
     void setClientStreamingPort(int port);
-    sls::IpAddr getClientStreamingIP() const;
-    void setClientStreamingIP(const sls::IpAddr ip);
+    IpAddr getClientStreamingIP() const;
+    void setClientStreamingIP(const IpAddr ip);
     int getReceiverStreamingHwm() const;
     void setReceiverStreamingHwm(const int limit);
 
@@ -466,6 +470,16 @@ class Module : public virtual slsDetectorDefs {
     int getChipStatusRegister() const;
     void setGainCaps(int caps);
     int getGainCaps();
+    defs::polarity getPolarity() const;
+    void setPolarity(const defs::polarity enable);
+    bool getInterpolation() const;
+    void setInterpolation(const bool enable);
+    bool getPumpProbe() const;
+    void setPumpProbe(const bool enable);
+    bool getAnalogPulsing() const;
+    void setAnalogPulsing(const bool enable);
+    bool getDigitalPulsing() const;
+    void setDigitalPulsing(const bool enable);
 
     /**************************************************
      *                                                *
@@ -548,8 +562,6 @@ class Module : public virtual slsDetectorDefs {
     void programFPGA(std::vector<char> buffer,
                      const bool forceDeleteNormalFile);
     void resetFPGA();
-    void copyDetectorServer(const std::string &fname,
-                            const std::string &hostname);
     void updateDetectorServer(std::vector<char> buffer,
                               const std::string &serverName);
     void updateKernel(std::vector<char> buffer);
@@ -578,7 +590,7 @@ class Module : public virtual slsDetectorDefs {
     void setStopPort(int port_number);
     bool getLockDetector() const;
     void setLockDetector(bool lock);
-    sls::IpAddr getLastClientIP() const;
+    IpAddr getLastClientIP() const;
     std::string executeCommand(const std::string &cmd);
     int64_t getNumberOfFramesFromStart() const;
     int64_t getActualTime() const;
@@ -725,7 +737,9 @@ class Module : public virtual slsDetectorDefs {
     void checkDetectorVersionCompatibility();
     void checkReceiverVersionCompatibility();
     void setModule(sls_detector_module &module, bool trimbits = true);
-    int sendModule(sls_detector_module *myMod, sls::ClientSocket &client);
+    sls_detector_module getModule();
+    void sendModule(sls_detector_module *myMod, ClientSocket &client);
+    void receiveModule(sls_detector_module *myMod, ClientSocket &client);
     void updateReceiverStreamingIP();
 
     void updateRateCorrection();
@@ -759,6 +773,7 @@ class Module : public virtual slsDetectorDefs {
     std::string getTrimbitFilename(detectorSettings settings, int e_eV);
     sls_detector_module readSettingsFile(const std::string &fname,
                                          bool trimbits = true);
+    void saveSettingsFile(sls_detector_module &myMod, const std::string &fname);
     void sendProgram(bool blackfin, std::vector<char> buffer,
                      const int functionEnum, const std::string &functionType,
                      const std::string serverName = "",
@@ -767,13 +782,51 @@ class Module : public virtual slsDetectorDefs {
                                       const int timeRequired);
 
     const int moduleIndex;
-    mutable sls::SharedMemory<sharedModule> shm{0, 0};
+    mutable SharedMemory<sharedModule> shm{0, 0};
     static const int BLACKFIN_ERASE_FLASH_TIME = 65;
     static const int BLACKFIN_WRITE_TO_FLASH_TIME = 30;
     static const int NIOS_ERASE_FLASH_TIME_FPGA = 10;
     static const int NIOS_WRITE_TO_FLASH_TIME_FPGA = 45;
     static const int NIOS_ERASE_FLASH_TIME_KERNEL = 9;
     static const int NIOS_WRITE_TO_FLASH_TIME_KERNEL = 40;
+
+    enum mythen3_DacIndex {
+      M_VCASSH,
+      M_VTH2,
+      M_VRSHAPER,
+      M_VRSHAPER_N,
+      M_VIPRE_OUT,
+      M_VTH3,
+      M_VTH1,
+      M_VICIN,
+      M_VCAS,
+      M_VRPREAMP,
+      M_VCAL_N,
+      M_VIPRE,
+      M_VISHAPER,
+      M_VCAL_P,
+      M_VTRIM,
+      M_VDCSH
+    };
+
+    enum eiger_DacIndex {
+        E_SVP,
+        E_VTR,
+        E_VRF,
+        E_VRS,
+        E_SVN,
+        E_VTGSTV,
+        E_VCMP_LL,
+        E_VCMP_LR,
+        E_CAL,
+        E_VCMP_RL,
+        E_RXB_RB,
+        E_RXB_LB,
+        E_VCMP_RR,
+        E_VCP,
+        E_VCN,
+        E_VIS
+    };
 };
 
 } // namespace sls

slsDetectorSoftware/src/SharedMemory.h

@@ -13,7 +13,7 @@
 #include "sls/logger.h"
 #include "sls/sls_detector_exceptions.h"
 
-#include "stdlib.h"
+#include <cstdlib>
 #include <cerrno>  // errno
 #include <cstring> // strerror
 #include <fcntl.h> // O_CREAT, O_TRUNC..
@@ -22,279 +22,189 @@
 #include <sys/mman.h> // shared memory
 #include <sys/stat.h> // fstat
 #include <unistd.h>
-
-#define SHM_DETECTOR_PREFIX "/slsDetectorPackage_detector_"
-#define SHM_MODULE_PREFIX   "_module_"
-#define SHM_ENV_NAME        "SLSDETNAME"
-
 #include <iostream>
 #include <string>
 
 namespace sls {
 
+#define SHM_DETECTOR_PREFIX "/slsDetectorPackage_detector_"
+#define SHM_MODULE_PREFIX   "_module_"
+#define SHM_ENV_NAME        "SLSDETNAME"
+
 template <typename T> class SharedMemory {
+    static constexpr int NAME_MAX_LENGTH = 255;
+    std::string name;
+    T *shared_struct{};
 
   public:
-    //moduleid of -1 creates a detector only shared memory
-    SharedMemory(int detectorId, int moduleIndex, const std::string& tag = "") {
-        name = ConstructSharedMemoryName(detectorId, moduleIndex, tag);
+    // moduleid of -1 creates a detector only shared memory
+    SharedMemory(int detectorId, int moduleIndex, const std::string &tag = "") {
+        name = constructSharedMemoryName(detectorId, moduleIndex, tag);
     }
 
-    /**
-     * Delete the copy constructor and copy assignment since we don't want two
-     * objects managing the same resource
-     */
+    // Disable copy, since we refer to a unique location
     SharedMemory(const SharedMemory &) = delete;
     SharedMemory &operator=(const SharedMemory &other) = delete;
 
-    // Move constructor
     SharedMemory(SharedMemory &&other)
-        : name(other.name), fd(other.fd), shmSize(other.shmSize),
-          shared_struct(other.shared_struct) {
-
-        other.fd = -1;
+        : name(other.name), shared_struct(other.shared_struct) {
         other.shared_struct = nullptr;
-        other.shmSize = 0;
     }
 
-    // Move assignment
     SharedMemory &operator=(SharedMemory &&other) {
         name = other.name;
-        if (fd) {
-            close(fd);
-        }
-        fd = other.fd;
-        other.fd = -1;
-
-        if (shared_struct != nullptr) {
-            UnmapSharedMemory();
-        }
+        if (shared_struct != nullptr)
+            unmapSharedMemory();
         shared_struct = other.shared_struct;
         other.shared_struct = nullptr;
-
-        shmSize = other.shmSize;
-        other.shmSize = 0;
         return *this;
     }
 
     ~SharedMemory() {
-        if (fd >= 0)
-            close(fd);
-
-        if (shared_struct) {
-            UnmapSharedMemory();
-        }
+        if (shared_struct)
+            unmapSharedMemory();
     }
 
-    /**
-     * Verify if it exists
-     * @return true if exists, else false
-     */
-    bool IsExisting() {
-        bool ret = true;
+    T *operator()() { return shared_struct; }
+    const T *operator()() const { return shared_struct; }
+    std::string getName() const { return name; }
+
+    bool exists() {
         int tempfd = shm_open(name.c_str(), O_RDWR, 0);
         if ((tempfd < 0) && (errno == ENOENT)) {
-            ret = false;
+            return false;
         }
         close(tempfd);
-        return ret;
+        return true;
     }
 
-    std::string GetName() const { return name; }
-    size_t size() const { return shmSize; }
-
-    /**
-     * Create Shared memory and call MapSharedMemory to map it to an address
-     * throws a SharedMemoryError exception on failure to create, ftruncate or
-     * map
-     */
-    void CreateSharedMemory() {
-        fd = shm_open(name.c_str(), O_CREAT | O_TRUNC | O_EXCL | O_RDWR,
-                      S_IRUSR | S_IWUSR);
+    void createSharedMemory() {
+        int fd = shm_open(name.c_str(), O_CREAT | O_TRUNC | O_EXCL | O_RDWR,
+                          S_IRUSR | S_IWUSR);
         if (fd < 0) {
             std::string msg =
                 "Create shared memory " + name + " failed: " + strerror(errno);
-            LOG(logERROR) << msg;
             throw SharedMemoryError(msg);
         }
 
         if (ftruncate(fd, sizeof(T)) < 0) {
             std::string msg = "Create shared memory " + name +
                               " failed at ftruncate: " + strerror(errno);
-            LOG(logERROR) << msg;
             close(fd);
-            RemoveSharedMemory();
+            removeSharedMemory();
             throw SharedMemoryError(msg);
         }
-        shared_struct = MapSharedMemory();
+        shared_struct = mapSharedMemory(fd);
         new (shared_struct) T{};
         LOG(logINFO) << "Shared memory created " << name;
     }
 
-    /**
-     * Open existing Shared memory and call MapSharedMemory to map it to an
-     * address throws a SharedMemoryError exception on failure to open or map
-     */
-    void OpenSharedMemory() {
-        fd = shm_open(name.c_str(), O_RDWR, 0);
+    void openSharedMemory(bool verifySize) {
+        int fd = shm_open(name.c_str(), O_RDWR, 0);
         if (fd < 0) {
             std::string msg = "Open existing shared memory " + name +
                               " failed: " + strerror(errno);
-            LOG(logERROR) << msg;
             throw SharedMemoryError(msg);
         }
-
-        shared_struct = MapSharedMemory();
+        if (verifySize)
+            checkSize(fd);
+        shared_struct = mapSharedMemory(fd);
     }
 
-    /**
-     * Unmap shared memory from an address
-     * throws a SharedMemoryError exception on failure
-     */
-    void UnmapSharedMemory() {
+    void unmapSharedMemory() {
         if (shared_struct != nullptr) {
-            if (munmap(shared_struct, shmSize) < 0) {
+            if (munmap(shared_struct, sizeof(T)) < 0) {
                 std::string msg = "Unmapping shared memory " + name +
                                   " failed: " + strerror(errno);
-                LOG(logERROR) << msg;
-                close(fd);
                 throw SharedMemoryError(msg);
             }
             shared_struct = nullptr;
         }
     }
 
-    /**
-     * Remove existing Shared memory
-     */
-    void RemoveSharedMemory() {
-        UnmapSharedMemory();
+    void removeSharedMemory() {
+        unmapSharedMemory();
         if (shm_unlink(name.c_str()) < 0) {
             // silent exit if shm did not exist anyway
             if (errno == ENOENT)
                 return;
             std::string msg =
                 "Free Shared Memory " + name + " Failed: " + strerror(errno);
-            LOG(logERROR) << msg;
             throw SharedMemoryError(msg);
         }
         LOG(logINFO) << "Shared memory deleted " << name;
     }
 
-    /**
-     * Maximum length of name as from man pages
-     */
-    static const int NAME_MAX_LENGTH = 255;
-
-    /**
-     *Using the call operator to access the pointer
-     */
-    T *operator()() { return shared_struct; }
-
-    /**
-     *Using the call operator to access the pointer, const overload
-     */
-    const T *operator()() const { return shared_struct; }
-
   private:
-    /**
-     * Create Shared memory name
-     * throws exception if name created is longer than required 255(manpages)
-     * @param detectorId  detector id
-     * @param moduleIndex module id, -1 if a detector shared memory
-     * @returns shared memory name
-     */
-    std::string ConstructSharedMemoryName(int detectorId, int moduleIndex, const std::string& tag) {
+    std::string constructSharedMemoryName(int detectorId, int moduleIndex,
+                                          const std::string &tag) {
 
-        // using environment path
-        std::string sEnvPath;
+        // using environment variable
+        std::string slsdetname;
         char *envpath = getenv(SHM_ENV_NAME);
         if (envpath != nullptr) {
-            sEnvPath.assign(envpath);
-            sEnvPath.insert(0, "_");
+            slsdetname = envpath;
+            slsdetname.insert(0, "_");
         }
 
         std::stringstream ss;
-        if (moduleIndex < 0){
-            ss << SHM_DETECTOR_PREFIX << detectorId << sEnvPath;
+        if (moduleIndex < 0) {
+            ss << SHM_DETECTOR_PREFIX << detectorId << slsdetname;
             if (!tag.empty())
                 ss << "_" << tag;
+        } else {
+            ss << SHM_DETECTOR_PREFIX << detectorId << SHM_MODULE_PREFIX
+               << moduleIndex << slsdetname;
         }
 
-        else
-            ss << SHM_DETECTOR_PREFIX << detectorId << SHM_MODULE_PREFIX
-               << moduleIndex << sEnvPath;
-
-        std::string temp = ss.str();
-        if (temp.length() > NAME_MAX_LENGTH) {
+        std::string shm_name = ss.str();
+        if (shm_name.length() > NAME_MAX_LENGTH) {
             std::string msg =
-                "Shared memory initialization failed. " + temp + " has " +
-                std::to_string(temp.length()) + " characters. \n" +
+                "Shared memory initialization failed. " + shm_name + " has " +
+                std::to_string(shm_name.length()) + " characters. \n" +
                 "Maximum is " + std::to_string(NAME_MAX_LENGTH) +
                 ". Change the environment variable " + SHM_ENV_NAME;
-            LOG(logERROR) << msg;
             throw SharedMemoryError(msg);
         }
-        return temp;
+        return shm_name;
     }
 
-    /**
-     * Map shared memory to an address
-     * throws a SharedMemoryException exception on failure
-     */
-
-    T *MapSharedMemory() {
+    // from the Linux manual:
+    // After the mmap() call has returned, the file descriptor, fd, can
+    // be closed immediately without invalidating the mapping.
+    T *mapSharedMemory(int fd) {
         void *addr =
             mmap(nullptr, sizeof(T), PROT_READ | PROT_WRITE, MAP_SHARED, fd, 0);
+        close(fd);
         if (addr == MAP_FAILED) {
             std::string msg =
                 "Mapping shared memory " + name + " failed: " + strerror(errno);
-            LOG(logERROR) << msg;
-            close(fd);
             throw SharedMemoryError(msg);
         }
-        shmSize = sizeof(T);
-        close(fd);
-        return (T *)addr;
+        return static_cast<T *>(addr);
     }
 
-    /**
-     * Verify if existing shared memory size matches expected size
-     * @param expectedSize expected size of shared memory, replaced with smaller
-     * size if size does not match
-     * @return 0 for success, 1 for fail
-     */
-    int VerifySizeMatch(size_t expectedSize) {
+    void checkSize(int fd) {
         struct stat sb;
-        // could not fstat
         if (fstat(fd, &sb) < 0) {
             std::string msg = "Could not verify existing shared memory " +
                               name + " size match " +
                               "(could not fstat): " + strerror(errno);
-            LOG(logERROR) << msg;
             close(fd);
             throw SharedMemoryError(msg);
         }
 
-        // size does not match
-        auto sz = static_cast<size_t>(sb.st_size);
-        if (sz != expectedSize) {
-            std::string msg = "Existing shared memory " + name +
-                              " size does not match" + "Expected " +
-                              std::to_string(expectedSize) + ", found " +
-                              std::to_string(sz);
-            LOG(logERROR) << msg;
+        auto actual_size = static_cast<size_t>(sb.st_size);
+        auto expected_size = sizeof(T);
+        if (actual_size != expected_size) {
+            std::string msg =
+                "Existing shared memory " + name + " size does not match. " +
+                "Expected " + std::to_string(expected_size) + ", found " +
+                std::to_string(actual_size) +
+                ". Detector software mismatch? Try freeing shared memory.";
             throw SharedMemoryError(msg);
-            return 1;
         }
-        return 0;
     }
-
-
-    std::string name;
-    int fd{-1};
-    size_t shmSize{0};
-    T *shared_struct{nullptr};
 };
 
 } // namespace sls