mirror of
https://github.com/slsdetectorgroup/slsDetectorPackage.git
synced 2026-01-21 19:48:53 +01:00
deleted the wrong files
This commit is contained in:
@@ -0,0 +1,55 @@
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# SPDX-License-Identifier: LGPL-3.0-or-other
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# Copyright (C) 2021 Contributors to the SLS Detector Package
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#module add CBFlib/0.9.5
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INCDIR=-I. -I../ -I../interpolations -I../interpolations/etaVEL -I../dataStructures -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/ -I../tiffio/include
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LDFLAG= ../tiffio/src/tiffIO.cpp -L/usr/lib64/ -lpthread -lm -lstdc++ -pthread -lrt -ltiff -O3 -std=c++11
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MAIN=jungfrauClusterFinder.cpp
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all: jungfrauRawDataProcess
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jungfrauRawDataProcess: jungfrauRawDataProcess.cpp $(INCS) clean
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g++ -o jungfrauRawDataProcess jungfrauRawDataProcess.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL
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jungfrauClusterFinder: jungfrauClusterFinder.cpp $(INCS) clean
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g++ -o jungfrauClusterFinder jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL
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jungfrauClusterFinderHighZ: jungfrauClusterFinder.cpp $(INCS) clean
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g++ -o jungfrauClusterFinderHighZ jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DHIGHZ
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jungfrauClusterFinderStrx: jungfrauClusterFinder.cpp $(INCS) clean
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g++ -o jungfrauClusterFinderStrx jungfrauClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DJFSTRX
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jungfrauMakeEta: jungfrauInterpolation.cpp $(INCS) clean
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g++ -o jungfrauMakeEta jungfrauInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DFF
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jungfrauInterpolation: jungfrauInterpolation.cpp $(INCS) clean
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g++ -o jungfrauInterpolation jungfrauInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
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jungfrauNoInterpolation: jungfrauNoInterpolation.cpp $(INCS) clean
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g++ -o jungfrauNoInterpolation jungfrauNoInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
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jungfrauPhotonCounter: jungfrauPhotonCounter.cpp $(INCS) clean
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g++ -o jungfrauPhotonCounter jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER
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jungfrauAnalog: jungfrauPhotonCounter.cpp $(INCS) clean
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g++ -o jungfrauAnalog jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG
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jungfrauPhotonCounterHighZ: jungfrauPhotonCounter.cpp $(INCS) clean
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g++ -o jungfrauPhotonCounterHighZ jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DHIGHZ
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jungfrauAnalogHighZ: jungfrauPhotonCounter.cpp $(INCS) clean
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g++ -o jungfrauAnalogHighZ jungfrauPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG -DHIGHZ
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clean:
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rm -f jungfrauClusterFinder jungfrauMakeEta jungfrauInterpolation jungfrauNoInterpolation jungfrauPhotonCounter jungfrauAnalog
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@@ -1,49 +0,0 @@
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# SPDX-License-Identifier: LGPL-3.0-or-other
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# Copyright (C) 2021 Contributors to the SLS Detector Package
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#module add CBFlib/0.9.5
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INCDIR=-I. -I../ -I../interpolations -I../interpolations/etaVEL -I../dataStructures -I../../slsSupportLib/include/ -I../../slsReceiverSoftware/include/
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LDFLAG= ../tiffIO.cpp -L/usr/lib64/ -lpthread -lm -lstdc++ -pthread -lrt -ltiff -O3 -std=c++11
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MAIN=moench03ClusterFinder.cpp
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all: moenchClusterFinder moenchMakeEta moenchInterpolation moenchNoInterpolation moenchPhotonCounter moenchAnalog
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moenchClusterFinder: moench03ClusterFinder.cpp $(INCS) clean
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g++ -o moenchClusterFinder moench03ClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DNEWRECEIVER
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moenchClusterFinderHighZ: moench03ClusterFinder.cpp $(INCS) clean
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g++ -o moenchClusterFinderHighZ moench03ClusterFinder.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DSAVE_ALL -DNEWRECEIVER -DHIGHZ
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moenchMakeEta: moench03Interpolation.cpp $(INCS) clean
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g++ -o moenchMakeEta moench03Interpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DFF
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moenchInterpolation: moench03Interpolation.cpp $(INCS) clean
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g++ -o moenchInterpolation moench03Interpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
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moenchNoInterpolation: moench03NoInterpolation.cpp $(INCS) clean
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g++ -o moenchNoInterpolation moench03NoInterpolation.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF)
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moenchPhotonCounter: moenchPhotonCounter.cpp $(INCS) clean
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g++ -o moenchPhotonCounter moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER
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moenchAnalog: moenchPhotonCounter.cpp $(INCS) clean
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g++ -o moenchAnalog moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG
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moenchPhotonCounterHighZ: moenchPhotonCounter.cpp $(INCS) clean
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g++ -o moenchPhotonCounterHighZ moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DHIGHZ
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moenchAnalogHighZ: moenchPhotonCounter.cpp $(INCS) clean
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g++ -o moenchAnalogHighZ moenchPhotonCounter.cpp $(LDFLAG) $(INCDIR) $(LIBHDF5) $(LIBRARYCBF) -DNEWRECEIVER -DANALOG -DHIGHZ
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clean:
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rm -f moenchClusterFinder moenchMakeEta moenchInterpolation moenchNoInterpolation moenchPhotonCounter moenchAnalog
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@@ -0,0 +1,160 @@
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// SPDX-License-Identifier: LGPL-3.0-or-other
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// Copyright (C) 2021 Contributors to the SLS Detector Package
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//#include "sls/ansi.h"
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#include <iostream>
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//#include "moench03T1ZmqData.h"
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#ifndef JFSTRX
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#include "jungfrauHighZSingleChipData.h"
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#endif
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#ifdef JFSTRX
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#include "jungfrauLGADStrixelsData.h"
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#endif
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#include "multiThreadedAnalogDetector.h"
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#include "singlePhotonDetector.h"
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#include <fstream>
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#include <map>
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#include <stdio.h>
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#include <sys/stat.h>
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#include <ctime>
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using namespace std;
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int main(int argc, char *argv[]) {
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if (argc < 6) {
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cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax "
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<< endl;
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return 1;
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}
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int p = 10000;
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int fifosize = 1000;
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int nthreads = 1;
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int nsubpix = 25;
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int etabins = nsubpix * 10;
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double etamin = -1, etamax = 2;
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int csize = 3;
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int nx = 400, ny = 400;
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int save = 1;
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int nsigma = 5;
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int nped = 1000;
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int ndark = 100;
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int ok;
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int iprog = 0;
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#ifndef JFSTRX
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jungfrauHighZSingleChipData *decoder = new jungfrauHighZSingleChipData();
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#endif
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#ifdef JFSTRX
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cout << "bbb" << endl;
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jungfrauLGADStrixelsData *decoder = new jungfrauLGADStrixelsData();
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#endif
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decoder->getDetectorSize(nx, ny);
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cout << "nx " << nx << " ny " << ny << endl;
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// moench03T1ZmqData *decoder=new moench03T1ZmqData();
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singlePhotonDetector *filter =
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new singlePhotonDetector(decoder, csize, nsigma, 1, 0, nped, 200);
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// char tit[10000];
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cout << "filter " << endl;
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int *image;
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filter->newDataSet();
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int ff, np;
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int dsize = decoder->getDataSize();
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cout << " data size is " << dsize;
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char data[dsize];
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ifstream filebin;
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char *indir = argv[1];
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char *outdir = argv[2];
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char *fformat = argv[3];
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int runmin = atoi(argv[4]);
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int runmax = atoi(argv[5]);
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char fname[10000];
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char outfname[10000];
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char imgfname[10000];
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char pedfname[10000];
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char fn[10000];
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std::time_t end_time;
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FILE *of = NULL;
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cout << "input directory is " << indir << endl;
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cout << "output directory is " << outdir << endl;
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cout << "fileformat is " << fformat << endl;
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std::time(&end_time);
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cout << std::ctime(&end_time) << endl;
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char *buff;
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multiThreadedAnalogDetector *mt =
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new multiThreadedAnalogDetector(filter, nthreads, fifosize);
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mt->setDetectorMode(ePhotonCounting);
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mt->setFrameMode(eFrame);
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mt->StartThreads();
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mt->popFree(buff);
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cout << "mt " << endl;
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int ifr = 0;
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for (int irun = runmin; irun < runmax; irun++) {
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sprintf(fn, fformat, irun);
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sprintf(fname, "%s/%s.dat", indir, fn);
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sprintf(outfname, "%s/%s.clust", outdir, fn);
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sprintf(imgfname, "%s/%s.tiff", outdir, fn);
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std::time(&end_time);
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cout << std::ctime(&end_time) << endl;
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cout << fname << " " << outfname << " " << imgfname << endl;
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filebin.open((const char *)(fname), ios::in | ios::binary);
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// //open file
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if (filebin.is_open()) {
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of = fopen(outfname, "w");
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if (of) {
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mt->setFilePointer(of);
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// cout << "file pointer set " << endl;
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} else {
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cout << "Could not open " << outfname << " for writing "
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<< endl;
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mt->setFilePointer(NULL);
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return 1;
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}
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// //while read frame
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ff = -1;
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while (decoder->readNextFrame(filebin, ff, np, buff)) {
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mt->pushData(buff);
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mt->nextThread();
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mt->popFree(buff);
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ifr++;
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if (ifr % 10000 == 0)
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cout << ifr << " " << ff << endl;
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ff = -1;
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}
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cout << "--" << endl;
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filebin.close();
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while (mt->isBusy()) {
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;
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} // wait until all data are processed from the queues
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if (of)
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fclose(of);
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mt->writeImage(imgfname);
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mt->clearImage();
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std::time(&end_time);
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cout << std::ctime(&end_time) << endl;
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} else
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cout << "Could not open " << fname << " for reading " << endl;
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}
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return 0;
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}
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@@ -1,237 +0,0 @@
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//#include "sls/ansi.h"
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#include <iostream>
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//#include "moench03T1ZmqData.h"
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#ifdef NEWRECEIVER
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#ifndef RECT
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#include "moench03T1ReceiverDataNew.h"
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#endif
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#ifdef RECT
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#include "moench03T1ReceiverDataNewRect.h"
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#endif
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#endif
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#ifdef CSAXS_FP
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#include "moench03T1ReceiverData.h"
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#endif
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#ifdef OLDDATA
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#include "moench03Ctb10GbT1Data.h"
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#endif
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#ifdef REORDERED
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#include "moench03T1ReorderedData.h"
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#endif
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// #include "interpolatingDetector.h"
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//#include "etaInterpolationPosXY.h"
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// #include "linearInterpolation.h"
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// #include "noInterpolation.h"
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#include "multiThreadedAnalogDetector.h"
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#include "singlePhotonDetector.h"
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//#include "interpolatingDetector.h"
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#include <stdio.h>
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#include <map>
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#include <fstream>
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#include <sys/stat.h>
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#include <ctime>
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using namespace std;
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int main(int argc, char *argv[]) {
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if (argc<6) {
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cout << "Usage is " << argv[0] << "indir outdir fname runmin runmax " << endl;
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return 1;
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}
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int p=10000;
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int fifosize=1000;
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int nthreads=1;
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int nsubpix=25;
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int etabins=nsubpix*10;
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double etamin=-1, etamax=2;
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int csize=3;
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int nx=400, ny=400;
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int save=1;
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int nsigma=5;
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int nped=1000;
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int ndark=100;
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int ok;
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int iprog=0;
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#ifdef NEWRECEIVER
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#ifdef RECT
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cout << "Should be rectangular!" <<endl;
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#endif
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moench03T1ReceiverDataNew *decoder=new moench03T1ReceiverDataNew();
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cout << "RECEIVER DATA WITH ONE HEADER!"<<endl;
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#endif
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#ifdef CSAXS_FP
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moench03T1ReceiverData *decoder=new moench03T1ReceiverData();
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cout << "RECEIVER DATA WITH ALL HEADERS!"<<endl;
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#endif
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|
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#ifdef OLDDATA
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moench03Ctb10GbT1Data *decoder=new moench03Ctb10GbT1Data();
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cout << "OLD RECEIVER DATA!"<<endl;
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#endif
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|
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#ifdef REORDERED
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moench03T1ReorderedData *decoder=new moench03T1ReorderedData();
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cout << "REORDERED DATA!"<<endl;
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#endif
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decoder->getDetectorSize(nx,ny);
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cout << "nx " << nx << " ny " << ny << endl;
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|
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//moench03T1ZmqData *decoder=new moench03T1ZmqData();
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singlePhotonDetector *filter=new singlePhotonDetector(decoder,csize, nsigma, 1, 0, nped, 200);
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// char tit[10000];
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cout << "filter " << endl;
|
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|
||||
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||||
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// filter->readPedestals("/scratch/ped_100.tiff");
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// interp->readFlatField("/scratch/eta_100.tiff",etamin,etamax);
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// cout << "filter "<< endl;
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||||
|
||||
|
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int size = 327680;////atoi(argv[3]);
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|
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int* image;
|
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//int* image =new int[327680/sizeof(int)];
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filter->newDataSet();
|
||||
|
||||
|
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int ff, np;
|
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int dsize=decoder->getDataSize();
|
||||
cout << " data size is " << dsize;
|
||||
|
||||
|
||||
char data[dsize];
|
||||
|
||||
ifstream filebin;
|
||||
char *indir=argv[1];
|
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char *outdir=argv[2];
|
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char *fformat=argv[3];
|
||||
int runmin=atoi(argv[4]);
|
||||
int runmax=atoi(argv[5]);
|
||||
|
||||
char fname[10000];
|
||||
char outfname[10000];
|
||||
char imgfname[10000];
|
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char pedfname[10000];
|
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// strcpy(pedfname,argv[6]);
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char fn[10000];
|
||||
|
||||
std::time_t end_time;
|
||||
|
||||
FILE *of=NULL;
|
||||
cout << "input directory is " << indir << endl;
|
||||
cout << "output directory is " << outdir << endl;
|
||||
cout << "fileformat is " << fformat << endl;
|
||||
|
||||
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
char* buff;
|
||||
multiThreadedAnalogDetector *mt=new multiThreadedAnalogDetector(filter,nthreads,fifosize);
|
||||
|
||||
|
||||
mt->setDetectorMode(ePhotonCounting);
|
||||
mt->setFrameMode(eFrame);
|
||||
mt->StartThreads();
|
||||
mt->popFree(buff);
|
||||
|
||||
|
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cout << "mt " << endl;
|
||||
|
||||
int ifr=0;
|
||||
|
||||
|
||||
for (int irun=runmin; irun<runmax; irun++) {
|
||||
sprintf(fn,fformat,irun);
|
||||
sprintf(fname,"%s/%s.raw",indir,fn);
|
||||
sprintf(outfname,"%s/%s.clust",outdir,fn);
|
||||
sprintf(imgfname,"%s/%s.tiff",outdir,fn);
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
cout << fname << " " << outfname << " " << imgfname << endl;
|
||||
filebin.open((const char *)(fname), ios::in | ios::binary);
|
||||
// //open file
|
||||
if (filebin.is_open()){
|
||||
of=fopen(outfname,"w");
|
||||
if (of) {
|
||||
mt->setFilePointer(of);
|
||||
// cout << "file pointer set " << endl;
|
||||
} else {
|
||||
cout << "Could not open "<< outfname << " for writing " << endl;
|
||||
mt->setFilePointer(NULL);
|
||||
return 1;
|
||||
}
|
||||
// //while read frame
|
||||
ff=-1;
|
||||
while (decoder->readNextFrame(filebin, ff, np,buff)) {
|
||||
// cout << "*"<<ifr++<<"*"<<ff<< endl;
|
||||
// cout << ff << " " << np << endl;
|
||||
// //push
|
||||
// for (int ix=0; ix<400; ix++)
|
||||
// for (int iy=0; iy<400; iy++) {
|
||||
// if (decoder->getChannel(buff, ix, iy)<3000 || decoder->getChannel(buff, ix, iy)>8000) {
|
||||
// cout << ifr << " " << ff << " " << ix << " " << iy << " " << decoder->getChannel(buff, ix, iy) << endl ;
|
||||
// }
|
||||
// }
|
||||
|
||||
mt->pushData(buff);
|
||||
// // //pop
|
||||
mt->nextThread();
|
||||
// // // cout << " " << (void*)buff;
|
||||
mt->popFree(buff);
|
||||
ifr++;
|
||||
if (ifr%10000==0) cout << ifr << " " << ff << endl;
|
||||
ff=-1;
|
||||
}
|
||||
cout << "--" << endl;
|
||||
filebin.close();
|
||||
// //close file
|
||||
// //join threads
|
||||
while (mt->isBusy()) {;}//wait until all data are processed from the queues
|
||||
if (of)
|
||||
fclose(of);
|
||||
|
||||
mt->writeImage(imgfname);
|
||||
mt->clearImage();
|
||||
|
||||
std::time(&end_time);
|
||||
cout << std::ctime(&end_time) << endl;
|
||||
|
||||
} else
|
||||
cout << "Could not open "<< fname << " for reading " << endl;
|
||||
|
||||
|
||||
}
|
||||
|
||||
|
||||
return 0;
|
||||
}
|
||||
|
||||
Reference in New Issue
Block a user