jungfrau server: changes for new firmware, aligning adc deserializer. ctb serveR: removed unnecessary pll reset and polling mode for pll

slsDetectorServers/slsDetectorServer/AD9257.h

@@ -205,13 +205,8 @@ void AD9257_Configure(){
     AD9257_Set(AD9257_OUT_MODE_REG, AD9257_OUT_BINARY_OFST_VAL);
 
     //output clock phase
-//if defined(GOTTHARDD)  || defined(JUNGFRAUD)
-#ifdef GOTTHARDD
+#if defined(GOTTHARDD)  || defined(JUNGFRAUD)
     FILE_LOG(logINFO, ("\tOutput clock phase is at default: 180\n"));
-#elif JUNGFRAUD
-    // This is not required (by default it is 180) (like gotthard)
-	FILE_LOG(logINFO, ("\tOutput clock phase: 180\n"));
-	AD9257_Set(AD9257_OUT_PHASE_REG, AD9257_OUT_CLK_180_VAL);
 #else
 	FILE_LOG(logINFO, ("\tOutput clock phase: 60\n"));
 	AD9257_Set(AD9257_OUT_PHASE_REG, AD9257_OUT_CLK_60_VAL);

slsDetectorServers/slsDetectorServer/ALTERA_PLL.h

@@ -225,9 +225,6 @@ int ALTERA_PLL_SetOuputFrequency (int clkIndex, int pllVCOFreqMhz, int value) {
     // write frequency (post-scale output counter C)
     ALTERA_PLL_SetPllReconfigReg(ALTERA_PLL_C_COUNTER_REG, val);
 
-    // reset only PLL
-    ALTERA_PLL_ResetPLL();
-
     return (pllVCOFreqMhz / (low_count + high_count));
 }
 

slsDetectorServers/slsDetectorServer/slsDetectorFunctionList.h

@@ -280,7 +280,7 @@ extern void eraseFlash();													// programfpga.h
 extern int 	startWritingFPGAprogram(FILE** filefp);							// programfpga.h
 extern void stopWritingFPGAprogram(FILE* filefp);							// programfpga.h
 extern int 	writeFPGAProgram(char* fpgasrc, size_t fsize, FILE* filefp);	// programfpga.h
-void		setUnknowns();
+void		alignDeserializer();
 
 // eiger specific - iodelay, pulse, rate, temp, activate, delay nw parameter
 #elif EIGERD