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Data structures
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@ -0,0 +1,422 @@
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// SPDX-License-Identifier: LGPL-3.0-or-other
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// Copyright (C) 2021 Contributors to the SLS Detector Package
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#ifndef JUNGFRAULGADSTRIXELSDATAQUAD_H
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#define JUNGFRAULGADSTRIXELSDATAQUAD_H
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#ifdef CINT
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#include "sls/sls_detector_defs_CINT.h"
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#else
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#include "sls/sls_detector_defs.h"
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#endif
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#include "slsDetectorData.h"
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// #define VERSION_V2
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/**
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@short structure for a Detector Packet or Image Header
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@li frameNumber is the frame number
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@li expLength is the subframe number (32 bit eiger) or real time exposure
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time in 100ns (others)
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@li packetNumber is the packet number
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@li bunchId is the bunch id from beamline
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@li timestamp is the time stamp with 10 MHz clock
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@li modId is the unique module id (unique even for left, right, top, bottom)
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@li xCoord is the x coordinate in the complete detector system
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@li yCoord is the y coordinate in the complete detector system
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@li zCoord is the z coordinate in the complete detector system
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@li debug is for debugging purposes
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@li roundRNumber is the round robin set number
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@li detType is the detector type see :: detectorType
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@li version is the version number of this structure format
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*/
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#include <algorithm>
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#include <numeric>
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#include <tuple>
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namespace strixelQuad {
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constexpr int nc_rawimg = 1024; // for full images //256;
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constexpr int nc_quad = 512;
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constexpr int nr_rawimg = 512;
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constexpr int nr_chip = 256;
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constexpr int gr = 9;
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//shift due to extra pixels
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constexpr int shift_x = 2; //left
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constexpr int nc_strixel = ( nc_quad - shift_x - 2*gr ) / 3; //164
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constexpr int nr_strixel = ( nr_chip - 1 - gr ) * 3; //one half (-1 because double sided pixel) //738
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constexpr int nr_center = 6; //double sided pixels to be skipped
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// boundaries in ASIC coordinates (pixels at both bounds are included)
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constexpr int xstart = 256 + gr; // 265
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constexpr int xend = 255 + nc_quad - gr; // 758
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constexpr int bottom_ystart = gr; // 9
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constexpr int bottom_yend = nr_chip - 2; // 254
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constexpr int top_ystart = nr_chip + 1; // 257
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constexpr int top_yend = nr_chip*2 + gr - 1; // 502
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// x shift because of 2-pixel strixels on one side
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constexpr int shift = 2;
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} // namespace strixelQuad
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//to account for module rotation
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enum rotation {
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NORMAL = 0,
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INVERSE = 1
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};
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const int rota = NORMAL;
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typedef struct {
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uint64_t bunchNumber; /**< is the frame number */
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uint64_t pre; /**< something */
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} jf_header; // Aldo's header
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using namespace strixelQuad;
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class jungfrauLGADStrixelsDataQuad : public slsDetectorData<uint16_t> {
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private:
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int iframe;
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int x0, y0, x1, y1, shifty;
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struct {
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uint16_t xmin;
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uint16_t xmax;
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uint16_t ymin;
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uint16_t ymax;
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int nc;
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} globalROI;
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//to account for the inverted routing of the two different quad halfs
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enum location {
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BOTTOM = 0,
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TOP = 1
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}
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int multiplicator = 3;
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std::vector<int> mods{ 0, 1, 2 };
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void reverseVector( std::vector<int>& v ) {
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std::reverse( v.begin(), v.end() );
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std::cout << "mods reversed ";
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for ( auto i : v )
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std::cout << i << " ";
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std::cout << '\n';
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}
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void setMappingShifts( const int rot, const int half ) {
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x0 = xstart;
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x1 = xend;
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if (rot==NORMAL) {
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x0 += shift;
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} else {
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x1-=shift;
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reverseVector(mods);
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}
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if (half==BOTTOM) {
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y0 = bottom_ystart;
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y1 = bottom_yend;
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shifty = 0;
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} else {
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y0 = top_ystart;
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y1 = top_yend;
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reverseVector(mods);
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shifty = nr_strixel + nr_center; //double-sided pixels in the center have to be jumped
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}
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}
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void remap( int xmin=0, int xmax=0, int ymin=0, int ymax=0 ) {
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int ix, iy = 0;
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// remapping loop
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for (int ipy = y0; ipy <= y1; ipy++) {
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for (int ipx = x0; ipx <= x1; ipx++) {
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ix = int((ipx - x0) / multiplicator);
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for (int m = 0; m < multiplicator; ++m) {
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if ((ipx - x0) % multiplicator == mods[m])
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iy = (ipy - y0) * multiplicator + mods[m] + shifty;
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}
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// if (iy< 40) cout << iy << " " << ix <<endl;
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if (xmin < xmax && ymin < ymax) {
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if ( ipx>=xmin && ipx<=xmax && ipy>=ymin && ipy <=ymax )
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dataMap[iy][ix] =
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sizeof(header) + (globalROI.nc * (ipy - globalROI.ymin) + (ipx - globalROI.xmin)) * 2;
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} else {
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dataMap[iy][ix] = sizeof(header) + (nc_rawimg * ipy + ipx) * 2;
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}
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}
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}
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}
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void remapQuad(const int rot) {
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setMappingShifts( rot, BOTTOM );
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remap();
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setMappingShifts( rot, TOP );
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remap();
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}
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std::tuple< uint16_t, uint16_t, uint16_t, uint16_t > adjustROItoLimits(uint16_t xmin,
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uint16_t xmax,
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uint16_t ymin,
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uint16_t ymax,
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uint16_t lim_roi_xmin,
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uint16_t lim_roi_xmax,
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uint16_t lim_roi_ymin,
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uint16_t lim_roi_ymax) {
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uint16_t xmin_roi, xmax_roi, ymin_roi, ymax_roi;
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if ( xmin < lim_roi_xmin)
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xmin_roi = lim_roi_xmin;
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else
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xmin_roi = xmin;
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if ( xmax > lim_roi_xmax )
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xmax_roi = lim_roi_xmax;
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else
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xmax_roi = xmax;
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if ( ymin < lim_roi_ymin )
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ymin_roi = lim_roi_ymin;
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else
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ymin_roi = ymin;
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if ( ymax > lim_roi_ymax )
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ymax_roi = lim_roi_ymax;
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else
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ymax_roi = ymax;
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return std::make_tuple(xmin_roi, xmax_roi, ymin_roi, ymax_roi);
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}
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std::vector < std::tuple< int, uint16_t, uint16_t, uint16_t, uint16_t > > mapSubROIs(uint16_t xmin,
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uint16_t xmax,
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uint16_t ymin,
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uint16_t ymax) {
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bool bottom = false;
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bool top = false;
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for ( int x=xmin; x!=xmax+1; ++x ) {
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for ( int y=ymin; y!=ymax; ++y ) {
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if ( xstart<=x && x<=xend && bottom_ystart<=y && y<=bottom_yend )
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bottom = true;
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if ( xstart<=x && x<=xend && top_ystart<=y && y<=top_yend )
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top = true;
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}
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}
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uint16_t xmin_roi{}, xmax_roi{}, ymin_roi{}, ymax_roi{};
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std::vector < std::tuple< int, uint16_t, uint16_t, uint16_t, uint16_t > > rois{};
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if (bottom) {
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std::tie( xmin_roi, xmax_roi, ymin_roi, ymax_roi ) =
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adjustROItoLimits( xmin, xmax, ymin, ymax,
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xstart, xend, bottom_ystart, bottom_yend );
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rois.push_back( std::make_tuple( BOTTOM, xmin_roi, xmax_roi, ymin_roi, ymax_roi ) );
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}
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if (top) {
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std::tie( xmin_roi, xmax_roi, ymin_roi, ymax_roi ) =
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adjustROItoLimits( xmin, xmax, ymin, ymax,
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xstart, xend, top_ystart, top_yend );
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rois.push_back( std::make_tuple( TOP, xmin_roi, xmax_roi, ymin_roi, ymax_roi ) );
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}
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return rois;
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}
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void remapROI(std::tuple< int, uint16_t, uint16_t, uint16_t, uint16_t > roi, const int rot ) {
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int half, xmin, xmax, ymin, ymax;
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std::tie( half, xmin, xmax, ymin, ymax ) = roi;
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setMappingShifts(rot, half);
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std::cout << "remapping roi: "
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<< ", x0: " << x0 << ", x1: " << x1 << ", y0: " << y0
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<< ", y1: " << y1 << std::endl;
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std::cout << "Adjusted roi: [" << xmin << ", " << xmax << ", " << ymin << ", " << ymax << "]" << std::endl;
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remap( xmin, xmax, ymin, ymax );
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}
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public:
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using header = sls::defs::sls_receiver_header;
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jungfrauLGADStrixelsDataQuad(uint16_t xmin = 0, uint16_t xmax = 0,
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uint16_t ymin = 0, uint16_t ymax = 0)
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: slsDetectorData<uint16_t>(
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nc_strixel,
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nr_strixel * 2 + nr_center,
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nc_strixel * ( nr_strixel * 2 + nr_center ) * 2 + sizeof(header)) {
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std::cout << "Jungfrau strixels quad with full module data "
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<< std::endl;
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// Fill all strixels with dummy values
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for (int ix = 0; ix != nc_strixel; ++ix) {
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for (int iy = 0; iy != nr_strixel * 2 + nr_center; ++iy) {
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dataMap[iy][ix] = sizeof(header);
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}
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}
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globalROI.xmin = xmin;
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globalROI.xmax = xmax;
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globalROI.ymin = ymin;
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globalROI.ymax = ymax;
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std::cout << "sizeofheader = " << sizeof(header) << std::endl;
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std::cout << "Jungfrau strixels quad with full module data "
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<< std::endl;
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if (xmin < xmax && ymin < ymax) {
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// get ROI raw image number of columns
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globalROI.nc = xmax - xmin + 1;
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std::cout << "nc_roi = " << globalROI.nc << std::endl;
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dataSize =
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(xmax - xmin + 1) * (ymax - ymin + 1) * 2 + sizeof(header);
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std::cout << "datasize " << dataSize << std::endl;
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auto rois = mapSubROIs(xmin, xmax, ymin, ymax);
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//function to fill vector of rois from globalROI
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for ( auto roi : rois )
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remapROI(roi, rota);
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} else {
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remapQuad( rota );
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}
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iframe = 0;
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std::cout << "data struct created" << std::endl;
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};
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/**
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Returns the value of the selected channel for the given dataset as
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double. \param data pointer to the dataset (including headers etc) \param
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ix pixel number in the x direction \param iy pixel number in the y
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direction \returns data for the selected channel, with inversion if
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required as double
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*/
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virtual double getValue(char *data, int ix, int iy = 0) {
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uint16_t val = getChannel(data, ix, iy) & 0x3fff;
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return val;
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};
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/**
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Returns the frame number for the given dataset. Purely virtual func.
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\param buff pointer to the dataset
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\returns frame number
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*/
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int getFrameNumber(char *buff) {
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#ifdef ALDO // VH
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return ((jf_header *)buff)->bunchNumber; // VH
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#endif // VH
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return ((header *)buff)->detHeader.frameNumber;
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};
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/**
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Returns the packet number for the given dataset. purely virtual func
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\param buff pointer to the dataset
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\returns packet number number
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*/
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int getPacketNumber(char *buff) {
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#ifdef ALDO // VH
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// uint32_t fakePacketNumber = 1000;
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// return fakePacketNumber; //VH //TODO: Keep in mind in case of bugs!
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// //This is definitely bad!
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return 1000;
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#endif // VH
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return ((header *)buff)->detHeader.packetNumber;
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};
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char *readNextFrame(std::ifstream &filebin) {
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int ff = -1, np = -1;
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return readNextFrame(filebin, ff, np);
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};
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char *readNextFrame(std::ifstream &filebin, int &ff) {
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int np = -1;
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return readNextFrame(filebin, ff, np);
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};
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char *readNextFrame(std::ifstream &filebin, int &ff, int &np) {
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char *data = new char[dataSize];
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char *d = readNextFrame(filebin, ff, np, data);
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if (d == NULL) {
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delete[] data;
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data = NULL;
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}
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return data;
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};
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char *readNextFrame(std::ifstream &filebin, int &ff, int &np, char *data) {
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//char *retval = 0;
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//int nd;
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//int fnum = -1;
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np = 0;
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//int pn;
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//std::cout << dataSize << std::endl;
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//if (ff >= 0) {
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// fnum = ff; }
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if (filebin.is_open()) {
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if (filebin.read(data, dataSize)) {
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std::cout << "*";
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ff = getFrameNumber(data);
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np = getPacketNumber(data);
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return data;
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}
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std::cout << "#";
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} else {
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std::cout << "File not open" << std::endl;
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}
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return NULL;
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};
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/* Loops over a memory slot until a complete frame is found (i.e. all */
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/* packets 0 to nPackets, same frame number). purely virtual func \param
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*/
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/* data pointer to the memory to be analyzed \param ndata reference to
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* the */
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/* amount of data found for the frame, in case the frame is incomplete at
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*/
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/* the end of the memory slot \param dsize size of the memory slot to be
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*/
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/* analyzed \returns pointer to the beginning of the last good frame
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* (might */
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/* be incomplete if ndata smaller than dataSize), or NULL if no frame is
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*/
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/* found */
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/* *\/ */
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virtual char *findNextFrame(char *data, int &ndata, int dsize) {
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if (dsize < dataSize)
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ndata = dsize;
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else
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ndata = dataSize;
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return data;
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};
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// int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
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};
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#endif
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@ -331,7 +331,7 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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void remapROI(std::tuple< int, int, uint16_t, uint16_t, uint16_t, uint16_t > roi) {
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// determine group and chip selected by ROI
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int group, xmin, xmax, ymin, ymax;
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std::tie( mchip, group, xmin, xmax, ymin, ymax ) = roi;
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std::tie( mchip, group, xmin, xmax, ymin, ymax ) = roi;
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/*
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if (ymax <= c1g1_yend + bond_shift_y) {
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group = 1;
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@ -359,13 +359,13 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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mchip = -1;
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}
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*/
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int multiplicator = getMultiplicator(group);
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setMappingShifts(group);
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std::cout << "remapping chip: " << mchip << ", group: " << group << ", m: " << multiplicator
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<< ", x0: " << x0 << ", x1: " << x1 << ", y0: " << y0
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<< ", y1: " << y1 << std::endl;
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std::cout << "Adjusted roi: [" << xmin << ", " << xmax << ", " << ymin << ", " << ymax << "]" << std::endl;
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int multiplicator = getMultiplicator(group);
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setMappingShifts(group);
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std::cout << "remapping chip: " << mchip << ", group: " << group << ", m: " << multiplicator
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<< ", x0: " << x0 << ", x1: " << x1 << ", y0: " << y0
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<< ", y1: " << y1 << std::endl;
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std::cout << "Adjusted roi: [" << xmin << ", " << xmax << ", " << ymin << ", " << ymax << "]" << std::endl;
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// make sure loop bounds are correct
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/*
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@ -381,24 +381,24 @@ class jungfrauLGADStrixelsData : public slsDetectorData<uint16_t> {
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*/
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// remapping loop
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int ix, iy = 0;
|
||||
for (int ipy = y0; ipy <= y1; ++ipy) {
|
||||
for (int ipx = x0; ipx <= x1; ++ipx) {
|
||||
int ix, iy = 0;
|
||||
for (int ipy = y0; ipy <= y1; ++ipy) {
|
||||
for (int ipx = x0; ipx <= x1; ++ipx) {
|
||||
|
||||
ix = int((ipx - x0 /*-xmin*/) / multiplicator);
|
||||
for (int m = 0; m < multiplicator; m++) {
|
||||
if ((ipx - x0 /*-xmin*/) % multiplicator == m)
|
||||
iy = (ipy - y0 /*-ymin*/) * multiplicator + m + shifty;
|
||||
}
|
||||
|
||||
// if (iy< 40) cout << iy << " " << ix <<endl;
|
||||
if ( ipx>=xmin && ipx<=xmax && ipy>=ymin && ipy <=ymax )
|
||||
dataMap[iy][ix] =
|
||||
sizeof(header) + (globalROI.nc * (ipy - globalROI.ymin) + (ipx - globalROI.xmin)) * 2;
|
||||
else dataMap[iy][ix] = sizeof(header);
|
||||
groupmap[iy][ix] = group - 1;
|
||||
}
|
||||
}
|
||||
ix = int((ipx - x0 /*-xmin*/) / multiplicator);
|
||||
for (int m = 0; m < multiplicator; m++) {
|
||||
if ((ipx - x0 /*-xmin*/) % multiplicator == m)
|
||||
iy = (ipy - y0 /*-ymin*/) * multiplicator + m + shifty;
|
||||
}
|
||||
|
||||
// if (iy< 40) cout << iy << " " << ix <<endl;
|
||||
if ( ipx>=xmin && ipx<=xmax && ipy>=ymin && ipy <=ymax )
|
||||
dataMap[iy][ix] =
|
||||
sizeof(header) + (globalROI.nc * (ipy - globalROI.ymin) + (ipx - globalROI.xmin)) * 2;
|
||||
else dataMap[iy][ix] = sizeof(header);
|
||||
groupmap[iy][ix] = group - 1;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
public:
|
||||
|
||||
Loading…
x
Reference in New Issue
Block a user