added patternGenerator and slsDteectorCalibration directory in order to compile the ctbGui

This commit is contained in:
2019-05-29 11:38:43 +02:00
parent a008c2b2c8
commit 25541b37f6
67 changed files with 15213 additions and 2 deletions

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#ifndef MYTHEN301JCTBDATA_H
#define MYTHEN301JCTBDATA_H
class mythen3_01_jctbData : public slsDetectorData<short unsigned int> {
public:
mythen3_01_jctbData( int nch=64*3,int dr=24, int off=5): slsDetectorData<short unsigned int>(64*3,1,dr*8*nch,NULL,NULL,NULL), dynamicRange(dr), serialOffset(off), frameNumber(0), numberOfCounters(nch) {};
virtual void getPixel(int ip, int &x, int &y) {x=-1; y=-1;};
virtual short unsigned int getChannel(char *data, int ix, int iy=0) {
int ret=-1;
short unsigned int *val=mythen03_frame(data,dynamicRange,numberOfCounters,serialOffset);
if (ix>=0 && ix<numberOfCounters) ret=val[ix];
delete [] val;
return ret;
};
virtual int getFrameNumber(char *buff) {return frameNumber;};
virtual char *findNextFrame(char *data, int &ndata, int dsize) {
ndata=dsize;
return data;
}
virtual char *readNextFrame(ifstream &filebin) {
char *data=NULL;
if (filebin.is_open()) {
data=new char[dataSize];
filebin.read(data,dataSize);
}
return data;
}
virtual short unsigned int **getData(char *ptr, int dsize=-1) {
short unsigned int **val;
val=new short unsigned int*[1];
val[0]=mythen03_frame(ptr,dynamicRange,nx,serialOffset);
return val;
}
virtual short unsigned int* mythen03_frame(char *ptr, int dr=24, int nch=64*3, int off=5) {
// off=0;
int iarg;
int64_t word, *wp;
short unsigned int* val=new short unsigned int[nch];
int bit[64];
int nb=2;
int ioff=0;
int idr=0;
int ib=0;
int iw=0;
int ii=0;
bit[0]=19;
bit[1]=8;
idr=0;
for (ib=0; ib<nch; ib++) {
val[ib]=0;
}
wp=(int64_t*)ptr;
for (iw=0; iw<nch/nb; iw) {
word=*wp;;
if (ioff<off) {
ioff++;
cout <<"*";
} else {
if (idr<16) {
for (ib=0; ib<nb; ib++) {
if (word&(1<<bit[ib])) {
cout << "+" ;
val[iw+nch/nb*(ib)]|=(1<<idr);
} else {
cout << "-" ;
}
}//end for()
}
idr++;
if (idr==dr) {
idr=0;
// cout << dec << " " << iw << " " << val[iw] << " " << val[iw+nch/2] << endl;
cout <<dec << iw<<endl;
iw++;
}//end if()
}//end else()
wp+=1;
ii++;
}//end for
cout << "M3.01 Decoded "<<ii << " samples"<< endl;
cout << "M3.01 Should be "<< nch/nb*dr+off << " samples"<< endl;
return val;
}
virtual int setFrameNumber(int f=0) {if (f>=0) frameNumber=f; return frameNumber; };
virtual int setDynamicRange(int d=-1) {if (d>0 && d<=24) dynamicRange=d; return dynamicRange;};
virtual int setSerialOffset(int d=-1) {if (d>=0) serialOffset=d; return serialOffset;};
virtual int setNumberOfCounters(int d=-1) {if (d>=0) numberOfCounters=d; return numberOfCounters;};
private:
int dynamicRange;
int serialOffset;
int frameNumber;
int numberOfCounters;
};
#endif

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#ifndef MYTHEN302JCTBDATA_H
#define MYTHEN302JCTBDATA_H
#include "Mythen3_01_jctbData.h"
//class mythen3_02_jctbData : public slsDetectorData<short unsigned int> {
class mythen3_02_jctbData : public mythen3_01_jctbData {
public:
mythen3_02_jctbData( int nch=64*3,int dr=24, int off=5): mythen3_01_jctbData( nch,dr, off)
//slsDetectorData<short unsigned int>(64*3,1,dr*8*nch,NULL,NULL,NULL), dynamicRange(dr), serialOffset(off), frameNumber(0), numberOfCounters(nch)
{};
/* virtual void getPixel(int ip, int &x, int &y) {x=-1; y=-1;}; */
/* virtual short unsigned int getChannel(char *data, int ix, int iy=0) { */
/* int ret=-1; */
/* short unsigned int *val=mythen03_frame(data,dynamicRange,numberOfCounters,serialOffset); */
/* if (ix>=0 && ix<numberOfCounters) ret=val[ix]; */
/* delete [] val; */
/* return ret; */
/* }; */
/* virtual int getFrameNumber(char *buff) {return frameNumber;}; */
/* virtual char *findNextFrame(char *data, int &ndata, int dsize) { */
/* ndata=dsize; */
/* return data; */
/* } */
/* virtual char *readNextFrame(ifstream &filebin) { */
/* char *data=NULL; */
/* if (filebin.is_open()) { */
/* data=new char[dataSize]; */
/* filebin.read(data,dataSize); */
/* } */
/* return data; */
/* } */
/* virtual short unsigned int **getData(char *ptr, int dsize=-1) { */
/* short unsigned int **val; */
/* val=new short unsigned int*[1]; */
/* val[0]=mythen03_frame(ptr,dynamicRange,nx,serialOffset); */
/* return val; */
/* } */
virtual short unsigned int* mythen03_frame(char *ptr, int dr=24, int nch=64*3, int off=5) {
// off=0;
int iarg;
int64_t word, *wp;
short unsigned int* val=new short unsigned int[nch];
int bit[64];
int nb=2;
int ioff=0;
int idr=0;
int ib=0;
int ich=0;
int ii=0;
int iw=0;
bit[0]=17;//19;
bit[1]=6;//8;
idr=0;
for (ib=0; ib<nch; ib++) {
val[ib]=0;
}
wp=(int64_t*)ptr;
for (iw=0; iw<nch/nb; iw) {
word=*wp;
if (ioff<off) {
ioff++;
cout <<"*";
} else {
if (idr<16) {
for (ib=0; ib<nb; ib++) {
if (word&(1<<bit[ib])) {
cout << "+" ;
val[iw+nch/nb*(ib)]|=(1<<idr);
} else {
cout << "-" ;
}
// cout << iw+nch/nb*(ib)<< " " ;
}//end for()
}
idr++;
if (idr==dr) {
idr=0;
// cout << dec << " " << iw << " " << val[iw] << " " << val[iw+nch/2] << endl;
cout <<dec << iw<<endl;
iw++;
}//end if()
}//end else()
wp+=1;
ii++;
}//end for
cout << "M3.02 Decoded "<<ii << " samples"<< endl;
cout << "M3.02 Should be "<< nch/nb*dr+off << " samples"<< endl;
return val;
}
/* virtual int setFrameNumber(int f=0) {if (f>=0) frameNumber=f; return frameNumber; }; */
/* virtual int setDynamicRange(int d=-1) {if (d>0 && d<=24) dynamicRange=d; return dynamicRange;}; */
/* virtual int setSerialOffset(int d=-1) {if (d>=0) serialOffset=d; return serialOffset;}; */
/* virtual int setNumberOfCounters(int d=-1) {if (d>=0) numberOfCounters=d; return numberOfCounters;}; */
/* private: */
/* int dynamicRange; */
/* int serialOffset; */
/* int frameNumber; */
/* int numberOfCounters; */
};
#endif

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#ifndef ADCSAR2_JCTBDATA_H
#define ADCSAR2_JCTBDATA_H
class adcSar2_jctbData : public slsDetectorData<short unsigned int> {
public:
adcSar2_jctbData(int nsamples=1000): slsDetectorData<short unsigned int>(nsamples,1,nsamples*8,NULL,NULL,NULL){};
virtual void getPixel(int ip, int &x, int &y) {x=ip/8; y=1;};
virtual short unsigned int getChannel(char *data, int ix, int iy=0) {
int adcvalue=0;
int vv1= *((int16_t*) (data+8*ix));
int vv2= *((int16_t*) (data+8*ix+2));
for (int jj=0;jj<8;jj++){
adcvalue=adcvalue+ (((vv1>>(jj*2)) & 0x1)<<(jj));
}
for (int jj=0;jj<4;jj++){
adcvalue=adcvalue+ (((vv2>>(jj*2)) & 0x1)<<(jj+8));
}
return adcvalue;
};
virtual int getFrameNumber(char *buff) {return frameNumber;};
virtual char *findNextFrame(char *data, int &ndata, int dsize) {
ndata=dsize;
return data;
}
virtual char *readNextFrame(ifstream &filebin) {
char *data=NULL;
if (filebin.is_open()) {
data=new char[dataSize];
filebin.read(data,dataSize);
}
return data;
}
/* virtual int **getData(char *ptr, int dsize=-1) { */
/* int **val; */
/* val=new int*[1]; */
/* val[0]=mythen03_frame(ptr,dynamicRange,nx,serialOffset); */
/* return val; */
/* } */
virtual int setFrameNumber(int f=0) {if (f>=0) frameNumber=f; return frameNumber; };
private:
int frameNumber;
};
#endif

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#ifndef CHIPTESTDATA_H
#define CHIPTESTDATA_H
#include "slsDetectorData.h"
class chiptestBoardData : public slsDetectorData<uint16_t> {
public:
/**
chiptestBoard data structure. Works for data acquired using the chiptestBoard.
Inherits and implements slsDetectorData.
Constructor (no error checking if datasize and offsets are compatible!)
\param npx number of pixels in the x direction
\param npy number of pixels in the y direction (1 for strips)
\param nadc number of adcs
\param offset offset at the beginning of the pattern
\param dMap array of size nx*ny storing the pointers to the data in the dataset (as offset)
\param dMask Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required)
\param dROI Array of size nx*ny. The elements are 1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all 1s.
*/
chiptestBoardData(int npx, int npy, int nadc, int offset, int **dMap=NULL, uint16_t **dMask=NULL, int **dROI=NULL): slsDetectorData<uint16_t>(npx, npy, nadc*(npx*npy)+offset, dMap, dMask, dROI), nAdc(nadc), offSize(offset), iframe(0) {}; // should be? nadc*(npx*npy+offset)
/**
Returns the frame number for the given dataset. Virtual func: works for slsDetectorReceiver data (also for each packet), but can be overloaded.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff){(void)buff; return iframe;};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param data pointer to the memory to be analyzed
\param ndata size of frame returned
\param dsize size of the memory slot to be analyzed
\returns always return the pointer to data (no frame loss!)
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize) {ndata=dsize;setDataSize(dsize); return data;};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the first packet of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin) {
int afifo_length=0;
uint16_t *afifo_cont;
if (filebin.is_open()) {
if (filebin.read((char*)&afifo_length,sizeof(uint32_t))) {
setDataSize(afifo_length*nAdc*sizeof(uint16_t));
afifo_cont=new uint16_t[afifo_length*nAdc];
if (filebin.read((char*)afifo_cont,afifo_length*sizeof(uint16_t)*nAdc)) {
iframe++;
return (char*)afifo_cont;
} else {
delete [] afifo_cont;
return NULL;
}
} else {
return NULL;
}
}
return NULL;
};
private:
const int nAdc; /**<number of ADC read out */
const int offSize; /**< offset at the beginning of the frame (depends on the pattern) */
int iframe; /**< frame number (calculated in software! not in the data)*/
};
#endif

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#ifndef GOTTHARD2MODULEDATANEW_H
#define GOTTHARD2MODULEDATANEW_H
#include "gotthardModuleDataNew.h"
class gotthardDoubleModuleDataNew : public slsDetectorData<uint16_t> {
private:
const int nModules;
const int offset;
int iframe;
public:
/**
Implements the slsReceiverData structure for the gotthard read out by a module i.e. using the slsReceiver
(1x1280 pixels, 2 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
gotthardDoubleModuleDataNew(int off=24*2, int nmod=2): slsDetectorData<uint16_t>(1280*nmod, 1, nmod*(1280*2+off)), nModules(nmod), offset(off),iframe(0) {
#ifdef BCHIP074_BCHIP075
cout << "This is a bchip074-bchip075 system " << endl;
#endif
uint16_t **dMask;
int **dMap;
int ix, iy;
int ypixels=1;
int xpixels=1280*nmod;
int imod, ipix;
dMask=new uint16_t*[1];
dMap=new int*[1];
dMap[0] = new int[1280*nmod];
dMask[0] = new uint16_t[1280*nmod];
for(int ix=0; ix<xpixels; ix++) {
imod=ix%2;
if (imod==0)
ipix=ix/2;
else
ipix=1280-1-ix/2;
if (imod==0)
dMap[0][ix] =ipix*2+offset;
else
dMap[0][ix] = 1280*2+2*offset+ipix*2;//dataSize-2-ix;//+2*offset;
// dMap[0][ix] = 2*ipix+offset*(imod+1)+1280*2*imod;
dMask[0][ix] = 0x0;
#ifdef BCHIP074_BCHIP075
int ibad=ix/2+1280*imod;
if ((ibad>=128*4 && ibad<128*5) || (ibad>=9*128 && ibad<10*128) || (ibad>=(1280+128*4) && ibad<ibad>=(1280+128*6)))
dataROIMask[0][ix]=0;
#endif
}
setDataMap(dMap);
setDataMask(dMask);
};
/**
Returns the frame number for the given dataset.
\param buff pointer to the dataset
\returns frame number
*/
int getFrameNumber(char *buff){if (offset>=sizeof(sls_detector_header)) return ((sls_detector_header*)buff)->frameNumber; return iframe;};//*((int*)(buff+5))&0xffffff;};
/**
gets the packets number (last packet is labelled with 0 and is replaced with 40)
\param buff pointer to the memory
\returns packet number
*/
int getPacketNumber(char *buff){if (offset>=sizeof(sls_detector_header))return ((sls_detector_header*)buff)->packetNumber;};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){
if (dsize<dataSize) ndata=dsize;
else ndata=dataSize;
return data;
}
virtual char *readNextFrame(ifstream &filebin) {
int ff=-1, np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int &ff) {
int np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
char *data=new char[dataSize];
char *d=readNextFrame(filebin, ff, np, data);
if (d==NULL) {delete [] data; data=NULL;}
return data;
}
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
char *retval=0;
int nd;
int fnum = -1;
np=0;
int pn;
// cout << dataSize << endl;
if (ff>=0)
fnum=ff;
if (filebin.is_open()) {
if (filebin.read(data, dataSize) ){
ff=getFrameNumber(data);
np=getPacketNumber(data);
return data;
}
}
return NULL;
};
};
#endif

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#ifndef GOTTHARDSHORTMODULEDATA_H
#define GOTTHARDSHORTMODULEDATA_H
#include "slsReceiverData.h"
class gotthardShortModuleData : public slsReceiverData<uint16_t> {
public:
/**
Implements the slsReceiverData structure for the gotthard short read out by a module i.e. using the slsReceiver
(1x256 pixels, 1 packet 256 large etc.)
\param c crosstalk parameter for the output buffer
*/
gotthardShortModuleData(double c=0): slsReceiverData<uint16_t>(xpixels, ypixels, npackets, buffersize), xtalk(c){
uint16_t **dMask;
int **dMap;
int ix, iy;
int offset = 2;
dMask=new uint16_t*[ypixels];
dMap=new int*[ypixels];
for (int i = 0; i < ypixels; i++) {
dMap[i] = new int[xpixels];
dMask[i] = new uint16_t[xpixels];
}
for(ix=0; ix<ypixels; ++ix)
for(iy=0; iy<xpixels; ++iy)
dMask[ix][iy] = 0x0;
for(ix=0; ix<ypixels; ++ix)
for(iy=0; iy<xpixels; ++iy){
dMap[ix][iy] = offset;
offset++;
}
setDataMap(dMap);
setDataMask(dMask);
};
/**
Returns the frame number for the given dataset.
\param buff pointer to the dataset
\returns frame number
*/
int getFrameNumber(char *buff){
return (*(int*)buff);
};
/**
gets the packets number (last packet is labelled with 0 and is replaced with 40)
\param buff pointer to the memory
\returns packet number
*/
int getPacketNumber(char *buff){
return 1;
};
/**
returns the pixel value as double correcting for the output buffer crosstalk
\param data pointer to the memory
\param ix coordinate in the x direction
\param iy coordinate in the y direction
\returns channel value as double
*/
double getValue(char *data, int ix, int iy=0) {
//check how it is for gotthard
if (xtalk==0)
return slsDetectorData<uint16_t>::getValue(data, ix, iy);
else
return slsDetectorData<uint16_t>::getValue(data, ix, iy)-xtalk*slsDetectorData<uint16_t>::getValue(data, ix-1, iy);
};
/** sets the output buffer crosstalk correction parameter
\param c output buffer crosstalk correction parameter to be set
\returns current value for the output buffer crosstalk correction parameter
*/
double setXTalk(double c) {xtalk=c; return xtalk;}
/** gets the output buffer crosstalk parameter
\returns current value for the output buffer crosstalk correction parameter
*/
double getXTalk() {return xtalk;}
private:
double xtalk; /**<output buffer crosstalk correction parameter */
const static int xpixels = 256;
const static int ypixels = 1;
const static int npackets = 1;
const static int buffersize = 518;
};
#endif

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#ifndef MOENCH02CTBDATA_H
#define MOENCH02CTBDATA_H
#include "slsDetectorData.h"
class moench02CtbData : public slsDetectorData<uint16_t> {
private:
int iframe;
// int *xmap, *ymap;
int nadc;
int sc_width;
int sc_height;
int maplength;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench02CtbData(int ns=6400): slsDetectorData<uint16_t>(160, 160, ns*2*32, NULL, NULL) , nadc(32), sc_width(40), sc_height(160) {
int adc_off[4]={40,0,120,80};
int adc_nr[4]={8,10,20,22};
int row, col;
int isample;
int iadc, iiadc;
int ix, iy;
maplength=this->getDataSize()/2;
//cout << maplength << endl;
for (iiadc=0; iiadc<4; iiadc++) {
iadc=adc_nr[iiadc];
//cout << iiadc << endl;
for (int i=0; i<sc_width*sc_height; i++) {
col=adc_off[iiadc]+(i%sc_width);
row=i/sc_width;
dataMap[row][col]=(32*i+iadc)*2;
if (dataMap[row][col]<0 || dataMap[row][col]>=dataSize) {
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
}
for (int i=0; i<maplength; i++) {
//cout << i << endl;
isample=i/32;
iiadc=i%32;
iadc=-1;
for (int iii=0; iii<4; iii++) {
if (iiadc==adc_nr[iii]) iadc=iii;
}
ix=isample%sc_width;
iy=isample/sc_width;
if(iadc>=0){
xmap[i]=adc_off[iadc]+ix;
ymap[i]=iy;
}else{
xmap[i]=-1;
ymap[i]=-1;
}
}
iframe=0;
cout << "data struct created" << endl;
};
void getPixel(int ip, int &x, int &y) {
if(ip>=0 && ip<maplength){
x=xmap[ip];
y=ymap[ip];
}/*else{
cerr<<"WRONG ARRAY LENGTH"<<endl;
cerr<<"Trying to access the "<<ip<<"-th element"<<endl;
}*/
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff){(void)buff; return iframe;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
virtual int getPacketNumber(char *buff)=0;
*/
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin){
// int afifo_length=0;
uint16_t *afifo_cont;
int ib=0;
if (filebin.is_open()) {
afifo_cont=new uint16_t[dataSize/2];
while (filebin.read(((char*)afifo_cont)+ib,2)) {
ib+=2;
if (ib==dataSize) break;
}
if (ib>0) {
iframe++;
//cout << ib/2 << "-" << endl;
//for (int i=0; i<ib/2; i++)
//cout << i << " " << afifo_cont[i] << endl;
return (char*)afifo_cont;
} else {
delete [] afifo_cont;
return NULL;
}
}
return NULL;
};
};
#endif

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#ifndef MOENCH03CTBDATA_H
#define MOENCH03CTBDATA_H
#include "slsDetectorData.h"
class moench03CtbData : public slsDetectorData<uint16_t> {
private:
int iframe;
int nadc;
int sc_width;
int sc_height;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench03CtbData(int ns=5000): slsDetectorData<uint16_t>(400, 400, ns*2*32, NULL, NULL) , nadc(32), sc_width(25), sc_height(200) {
int row, col;
int isample;
int iadc;
int ix, iy;
int adc_nr[32]={200,225,250,275,300,325,350,375,\
0,25,50,75,100,125,150,175,\
175,150,125,100,75,50,25,0,\
375,350,325,300,275,250,225,200};
/* int adc_nr[32]={300,325,350,375,300,325,350,375, \ */
/* 200,225,250,275,200,225,250,275,\ */
/* 100,125,150,175,100,125,150,175,\ */
/* 0,25,50,75,0,25,50,75}; */
for (iadc=0; iadc<nadc; iadc++) {
for (int i=0; i<sc_width*sc_height; i++) {
col=adc_nr[iadc]+(i%sc_width);
if (iadc<16) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
dataMap[row][col]=(nadc*i+iadc)*2;
if (dataMap[row][col]<0 || dataMap[row][col]>=2*400*400)
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
for (int i=0; i<nx*ny; i++) {
isample=i/nadc;
iadc=i%nadc;
ix=isample%sc_width;
iy=isample/sc_width;
if (iadc<(nadc/2)) {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2-1-iy;
} else {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2+iy;
}
}
iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff){(void)buff; return iframe;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
virtual int getPacketNumber(char *buff)=0;
*/
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin){
// int afifo_length=0;
uint16_t *afifo_cont;
int ib=0;
if (filebin.is_open()) {
afifo_cont=new uint16_t[dataSize/2];
while (filebin.read(((char*)afifo_cont)+ib,2)) {
ib+=2;
if (ib==dataSize) break;
}
if (ib>0) {
iframe++;
// cout << ib << "-" << endl;
return (char*)afifo_cont;
} else {
delete [] afifo_cont;
return NULL;
}
}
return NULL;
};
};
#endif

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#ifndef MOENCH03T1CTBDATA_H
#define MOENCH03T1CTBDATA_H
#include "slsDetectorData.h"
class moench03T1CtbData : public slsDetectorData<uint16_t> {
private:
int iframe;
int nadc;
int sc_width;
int sc_height;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench03T1CtbData(int ns=5000): slsDetectorData<uint16_t>(400, 400, ns*2*32, NULL, NULL) , nadc(32), sc_width(25), sc_height(200) {
int adc_nr[32]={300,325,350,375,300,325,350,375, \
200,225,250,275,200,225,250,275,\
100,125,150,175,100,125,150,175,\
0,25,50,75,0,25,50,75};
int row, col;
int isample;
int iadc;
int ix, iy;
for (iadc=0; iadc<nadc; iadc++) {
for (int i=0; i<sc_width*sc_height; i++) {
col=adc_nr[iadc]+(i%sc_width);
if (iadc<16) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
dataMap[row][col]=(nadc*i+iadc)*2;
if (dataMap[row][col]<0 || dataMap[row][col]>=2*400*400)
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
int adc4;
for (int i=0; i<nx*ny; i++) {
isample=i/nadc;
iadc=i%nadc;
ix=isample%sc_width;
iy=isample/sc_width;
adc4 = (int)iadc/4;
// if (iadc<(nadc/2)) {
if (adc4%2==0) {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2-1-iy;
} else {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2+iy;
}
}
iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff){(void)buff; return iframe;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
virtual int getPacketNumber(char *buff)=0;
*/
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin){
// int afifo_length=0;
uint16_t *afifo_cont;
int ib=0;
if (filebin.is_open()) {
afifo_cont=new uint16_t[dataSize/2];
while (filebin.read(((char*)afifo_cont)+ib,2)) {
ib+=2;
if (ib==dataSize) break;
}
if (ib>0) {
iframe++;
// cout << ib << "-" << endl;
return (char*)afifo_cont;
} else {
delete [] afifo_cont;
return NULL;
}
}
return NULL;
};
};
#endif

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#ifndef MOENCH03T1RECDATANEW_H
#define MOENCH03T1RECDATANEW_H
#include "slsDetectorData.h"
//#define VERSION_V2
/**
@short structure for a Detector Packet or Image Header
@li frameNumber is the frame number
@li expLength is the subframe number (32 bit eiger) or real time exposure time in 100ns (others)
@li packetNumber is the packet number
@li bunchId is the bunch id from beamline
@li timestamp is the time stamp with 10 MHz clock
@li modId is the unique module id (unique even for left, right, top, bottom)
@li xCoord is the x coordinate in the complete detector system
@li yCoord is the y coordinate in the complete detector system
@li zCoord is the z coordinate in the complete detector system
@li debug is for debugging purposes
@li roundRNumber is the round robin set number
@li detType is the detector type see :: detectorType
@li version is the version number of this structure format
*/
typedef struct {
uint64_t frameNumber; /**< is the frame number */
uint32_t expLength; /**< is the subframe number (32 bit eiger) or real time exposure time in 100ns (others) */
uint32_t packetNumber; /**< is the packet number */
uint64_t bunchId; /**< is the bunch id from beamline */
uint64_t timestamp; /**< is the time stamp with 10 MHz clock */
uint16_t modId; /**< is the unique module id (unique even for left, right, top, bottom) */
uint16_t xCoord; /**< is the x coordinate in the complete detector system */
uint16_t yCoord; /**< is the y coordinate in the complete detector system */
uint16_t zCoord; /**< is the z coordinate in the complete detector system */
uint32_t debug; /**< is for debugging purposes */
uint16_t roundRNumber; /**< is the round robin set number */
uint8_t detType; /**< is the detector type see :: detectorType */
uint8_t version; /**< is the version number of this structure format */
#ifndef VERSION_V1
uint64_t packetCaught[8]; /**< is the version number of this structure format */
#endif
} sls_detector_header;
class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
private:
int iframe;
int nadc;
int sc_width;
int sc_height;
const int nSamples;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench03T1ReceiverDataNew(int ns=5000): slsDetectorData<uint16_t>(400, 400, ns*2*32+sizeof(sls_detector_header)), nSamples(ns) {
int nadc=32;
int sc_width=25;
int sc_height=200;
int adc_nr[32]={300,325,350,375,300,325,350,375, \
200,225,250,275,200,225,250,275,\
100,125,150,175,100,125,150,175,\
0,25,50,75,0,25,50,75};
int row, col;
int isample;
int iadc;
int ix, iy;
int npackets=40;
int i;
int adc4(0);
for (int ip=0; ip<npackets; ip++) {
for (int is=0; is<128; is++) {
for (iadc=0; iadc<nadc; iadc++) {
i=128*ip+is;
adc4=(int)iadc/4;
if (i<sc_width*sc_height) {
// for (int i=0; i<sc_width*sc_height; i++) {
col=adc_nr[iadc]+(i%sc_width);
if (adc4%2==0) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
dataMap[row][col]=sizeof(sls_detector_header)+(nadc*i+iadc)*2;//+16*(ip+1);
if (dataMap[row][col]<0 || dataMap[row][col]>=nSamples*2*32)
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
}
}
int ipacket;
int ibyte;
int ii=0;
for (ibyte=0; ibyte<sizeof(sls_detector_header)/2; ibyte++){
xmap[ibyte]=-1;
ymap[ibyte]=-1;
}
int off=sizeof(sls_detector_header)/2;
for (ipacket=0; ipacket<npackets; ipacket++) {
for (ibyte=0; ibyte< 8192/2; ibyte++) {
i=ipacket*8208/2+ibyte;
isample=ii/nadc;
if (isample<nSamples) {
iadc=ii%nadc;
adc4 = (int)iadc/4;
ix=isample%sc_width;
iy=isample/sc_width;
if (adc4%2==0) {
xmap[i+off]=adc_nr[iadc]+ix;
ymap[i+off]=ny/2-1-iy;
} else {
xmap[i+off]=adc_nr[iadc]+ix;
ymap[i+off]=ny/2+iy;
}
}
ii++;
// }
}
}
iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
/* class jfrau_packet_header_t { */
/* public: */
/* unsigned char reserved[4]; */
/* unsigned char packetNumber[1]; */
/* unsigned char frameNumber[3]; */
/* unsigned char bunchid[8]; */
/* }; */
int getFrameNumber(char *buff){return ((sls_detector_header*)buff)->frameNumber;};//*((int*)(buff+5))&0xffffff;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
*/
int getPacketNumber(char *buff){return ((sls_detector_header*)buff)->packetNumber;}//((*(((int*)(buff+4))))&0xff)+1;};
/* /\** */
/* Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
/* \param data pointer to the memory to be analyzed */
/* \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
/* \param dsize size of the memory slot to be analyzed */
/* \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found */
/* *\/ */
/* virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;}; */
/* /\** */
/* Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors! */
/* \param filebin input file stream (binary) */
/* \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
/* *\/ */
/* virtual char *readNextFrame(ifstream &filebin){ */
/* // int afifo_length=0; */
/* uint16_t *afifo_cont; */
/* int ib=0; */
/* if (filebin.is_open()) { */
/* afifo_cont=new uint16_t[dataSize/2]; */
/* while (filebin.read(((char*)afifo_cont)+ib,2)) { */
/* ib+=2; */
/* if (ib==dataSize) break; */
/* } */
/* if (ib>0) { */
/* iframe++; */
/* // cout << ib << "-" << endl; */
/* return (char*)afifo_cont; */
/* } else { */
/* delete [] afifo_cont; */
/* return NULL; */
/* } */
/* } */
/* return NULL; */
/* }; */
virtual char *readNextFrame(ifstream &filebin) {
int ff=-1, np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int &ff) {
int np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
char *data=new char[dataSize];
char *d=readNextFrame(filebin, ff, np, data);
if (d==NULL) {delete [] data; data=NULL;}
return data;
}
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
char *retval=0;
int nd;
int fnum = -1;
np=0;
int pn;
// cout << dataSize << endl;
if (ff>=0)
fnum=ff;
if (filebin.is_open()) {
if (filebin.read(data, dataSize) ){
ff=getFrameNumber(data);
np=getPacketNumber(data);
return data;
}
}
return NULL;
};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){
if (dsize<dataSize) ndata=dsize;
else ndata=dataSize;
return data;
}
//int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
};
#endif

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#ifndef MOENCH03T1RECDATANEWRECT_H
#define MOENCH03T1RECDATANEWRECT_H
#include "slsDetectorData.h"
#define VERT 1
/**
@short structure for a Detector Packet or Image Header
@li frameNumber is the frame number
@li expLength is the subframe number (32 bit eiger) or real time exposure time in 100ns (others)
@li packetNumber is the packet number
@li bunchId is the bunch id from beamline
@li timestamp is the time stamp with 10 MHz clock
@li modId is the unique module id (unique even for left, right, top, bottom)
@li xCoord is the x coordinate in the complete detector system
@li yCoord is the y coordinate in the complete detector system
@li zCoord is the z coordinate in the complete detector system
@li debug is for debugging purposes
@li roundRNumber is the round robin set number
@li detType is the detector type see :: detectorType
@li version is the version number of this structure format
*/
typedef struct {
uint64_t frameNumber; /**< is the frame number */
uint32_t expLength; /**< is the subframe number (32 bit eiger) or real time exposure time in 100ns (others) */
uint32_t packetNumber; /**< is the packet number */
uint64_t bunchId; /**< is the bunch id from beamline */
uint64_t timestamp; /**< is the time stamp with 10 MHz clock */
uint16_t modId; /**< is the unique module id (unique even for left, right, top, bottom) */
uint16_t xCoord; /**< is the x coordinate in the complete detector system */
uint16_t yCoord; /**< is the y coordinate in the complete detector system */
uint16_t zCoord; /**< is the z coordinate in the complete detector system */
uint32_t debug; /**< is for debugging purposes */
uint16_t roundRNumber; /**< is the round robin set number */
uint8_t detType; /**< is the detector type see :: detectorType */
uint8_t version; /**< is the version number of this structure format */
} sls_detector_header;
class moench03T1ReceiverDataNew : public slsDetectorData<uint16_t> {
private:
int iframe;
int nadc;
int sc_width;
int sc_height;
const int nSamples;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
#ifdef HOR
moench03T1ReceiverDataNew(int ns=5000): slsDetectorData<uint16_t>(800, 200, ns*2*32+sizeof(sls_detector_header)), nSamples(ns) {
#endif
#ifdef VERT
moench03T1ReceiverDataNew(int ns=5000): slsDetectorData<uint16_t>(200, 800, ns*2*32+sizeof(sls_detector_header)), nSamples(ns) {
#endif
int nadc=32;
int sc_width=25;
int sc_height=200;
int adc_nr[32]={300,325,350,375,300,325,350,375, \
200,225,250,275,200,225,250,275,\
100,125,150,175,100,125,150,175,\
0,25,50,75,0,25,50,75};
int row, col;
int isample;
int iadc;
int ix, iy;
int npackets=40;
int i;
int adc4(0);
int pix;
int off=0;
#ifdef OFF_1
off=1;
#endif
cout << "This is a MOENCH with rectangular pixels!" << endl;
for (int ip=0; ip<npackets; ip++) {
for (int is=0; is<128; is++) {
for (iadc=0; iadc<nadc; iadc++) {
i=128*ip+is;
adc4=(int)iadc/4;
if (i<sc_width*sc_height) {
// for (int i=0; i<sc_width*sc_height; i++) {
col=adc_nr[iadc]+(i%sc_width);
if (adc4%2==0) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
pix=sizeof(sls_detector_header)+(nadc*i+iadc)*2;//+16*(ip+1);
if (pix<0 || pix>=nSamples*2*32+sizeof(sls_detector_header))
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
ix=col;
iy=row;
#ifdef HOR
if (row%2==off) {
ix=2*col;
iy=row/2;
} else {
ix=2*col+1;
iy=row/2;
}
#endif
#ifdef VERT
if (col%2==off) {
ix=col/2;
iy=row*2+1;
} else {
ix=col/2;
iy=row*2;
}
#endif
dataMap[iy][ix]=pix;
}
}
}
}
/* int ipacket; */
/* int ibyte; */
/* int ii=0; */
/* for (ibyte=0; ibyte<sizeof(sls_detector_header)/2; ibyte++){ */
/* xmap[ibyte]=-1; */
/* ymap[ibyte]=-1; */
/* } */
/* int off=sizeof(sls_detector_header)/2; */
/* for (ipacket=0; ipacket<npackets; ipacket++) { */
/* for (ibyte=0; ibyte< 8192/2; ibyte++) { */
/* i=ipacket*8208/2+ibyte; */
/* isample=ii/nadc; */
/* if (isample<nSamples) { */
/* iadc=ii%nadc; */
/* adc4 = (int)iadc/4; */
/* ix=isample%sc_width; */
/* iy=isample/sc_width; */
/* if (adc4%2==0) { */
/* xmap[i+off]=adc_nr[iadc]+ix; */
/* ymap[i+off]=ny/2-1-iy; */
/* } else { */
/* xmap[i+off]=adc_nr[iadc]+ix; */
/* ymap[i+off]=ny/2+iy; */
/* } */
/* } */
/* ii++; */
/* // } */
/* } */
/* } */
iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
/* class jfrau_packet_header_t { */
/* public: */
/* unsigned char reserved[4]; */
/* unsigned char packetNumber[1]; */
/* unsigned char frameNumber[3]; */
/* unsigned char bunchid[8]; */
/* }; */
int getFrameNumber(char *buff){return ((sls_detector_header*)buff)->frameNumber;};//*((int*)(buff+5))&0xffffff;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
*/
int getPacketNumber(char *buff){return ((sls_detector_header*)buff)->packetNumber;}//((*(((int*)(buff+4))))&0xff)+1;};
/* /\** */
/* Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
/* \param data pointer to the memory to be analyzed */
/* \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
/* \param dsize size of the memory slot to be analyzed */
/* \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found */
/* *\/ */
/* virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;}; */
/* /\** */
/* Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors! */
/* \param filebin input file stream (binary) */
/* \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
/* *\/ */
/* virtual char *readNextFrame(ifstream &filebin){ */
/* // int afifo_length=0; */
/* uint16_t *afifo_cont; */
/* int ib=0; */
/* if (filebin.is_open()) { */
/* afifo_cont=new uint16_t[dataSize/2]; */
/* while (filebin.read(((char*)afifo_cont)+ib,2)) { */
/* ib+=2; */
/* if (ib==dataSize) break; */
/* } */
/* if (ib>0) { */
/* iframe++; */
/* // cout << ib << "-" << endl; */
/* return (char*)afifo_cont; */
/* } else { */
/* delete [] afifo_cont; */
/* return NULL; */
/* } */
/* } */
/* return NULL; */
/* }; */
virtual char *readNextFrame(ifstream &filebin) {
int ff=-1, np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int &ff) {
int np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
char *data=new char[dataSize];
char *d=readNextFrame(filebin, ff, np, data);
if (d==NULL) {delete [] data; data=NULL;}
return data;
}
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
char *retval=0;
int nd;
int fnum = -1;
np=0;
int pn;
// cout << dataSize << endl;
if (ff>=0)
fnum=ff;
if (filebin.is_open()) {
if (filebin.read(data, dataSize) ){
ff=getFrameNumber(data);
np=getPacketNumber(data);
return data;
}
}
return NULL;
};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){
if (dsize<dataSize) ndata=dsize;
else ndata=dataSize;
return data;
}
//int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
};
#endif

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#ifndef MOENCH03T1REORDERED_H
#define MOENCH03T1REORDERED_H
#include "slsDetectorData.h"
class moench03T1ReorderedData : public slsDetectorData<uint16_t> {
private:
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
fwrite(&ff, 8, 1,of);//write detector frame number
fwrite(&ifr, 8, 1,of);//write datset frame number
fwrite(data,2,NX*NY,of);//write reordered data
*/
moench03T1ReorderedData(): slsDetectorData<uint16_t>(400, 400, 2*400*400+2*8) {
for (int iy=0; iy<400; iy++)
for (int ix=0; ix<400; ix++)
dataMap[iy][ix]=2*8+2*(iy*400+ix);
int ibyte;
for (ibyte=0; ibyte<8; ibyte++){
xmap[ibyte]=-1;
ymap[ibyte]=-1;
}
for (ibyte=0; ibyte<400*400; ibyte++){
xmap[ibyte+8]=ibyte%400;
ymap[ibyte+8]=ibyte/400;
}
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
/* class jfrau_packet_header_t { */
/* public: */
/* unsigned char reserved[4]; */
/* unsigned char packetNumber[1]; */
/* unsigned char frameNumber[3]; */
/* unsigned char bunchid[8]; */
/* }; */
int getFrameNumber(char *buff){return *((int*)buff);};
/* /\** */
/* Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
/* \param data pointer to the memory to be analyzed */
/* \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
/* \param dsize size of the memory slot to be analyzed */
/* \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found */
/* *\/ */
/* virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;}; */
/* /\** */
/* Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors! */
/* \param filebin input file stream (binary) */
/* \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
/* *\/ */
/* virtual char *readNextFrame(ifstream &filebin){ */
/* // int afifo_length=0; */
/* uint16_t *afifo_cont; */
/* int ib=0; */
/* if (filebin.is_open()) { */
/* afifo_cont=new uint16_t[dataSize/2]; */
/* while (filebin.read(((char*)afifo_cont)+ib,2)) { */
/* ib+=2; */
/* if (ib==dataSize) break; */
/* } */
/* if (ib>0) { */
/* iframe++; */
/* // cout << ib << "-" << endl; */
/* return (char*)afifo_cont; */
/* } else { */
/* delete [] afifo_cont; */
/* return NULL; */
/* } */
/* } */
/* return NULL; */
/* }; */
virtual char *readNextFrame(ifstream &filebin) {
int ff=-1, np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int &ff) {
int np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
char *data=new char[dataSize];
char *d=readNextFrame(filebin, ff, np, data);
if (d==NULL) {delete [] data; data=NULL;}
return data;
}
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
char *retval=0;
int nd;
int fnum = -1;
np=0;
int pn;
if (ff>=0)
fnum=ff;
if (filebin.is_open()) {
if (filebin.read(data, dataSize) ){
ff=getFrameNumber(data);
np=40;
return data;
}
}
return NULL;
};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){
if (dsize<dataSize) ndata=dsize;
else ndata=dataSize;
return data;
}
//int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
};
#endif

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#ifndef MOENCH03T1ZMQDATANEW_H
#define MOENCH03T1ZMQDATANEW_H
#include "slsDetectorData.h"
class moench03T1ZmqDataNew : public slsDetectorData<uint16_t> {
private:
// int iframe;
int nadc;
int sc_width;
int sc_height;
const int nSamples;
const int offset;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench03T1ZmqDataNew(int ns=5000): slsDetectorData<uint16_t>(400, 400, ns*32*2+sizeof(int)), nSamples(ns), offset(sizeof(int)) {
int nadc=32;
int sc_width=25;
int sc_height=200;
int adc_nr[32]={300,325,350,375,300,325,350,375, \
200,225,250,275,200,225,250,275,\
100,125,150,175,100,125,150,175,\
0,25,50,75,0,25,50,75};
int row, col;
int isample;
int iadc;
int ix, iy;
int npackets=40;
int i;
int adc4(0);
for (int ip=0; ip<npackets; ip++) {
for (int is=0; is<128; is++) {
for (iadc=0; iadc<nadc; iadc++) {
i=128*ip+is;
adc4=(int)iadc/4;
if (i<sc_width*sc_height) {
// for (int i=0; i<sc_width*sc_height; i++) {
col=adc_nr[iadc]+(i%sc_width);
if (adc4%2==0) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
dataMap[row][col]=(nadc*i+iadc)*2+offset;//+16*(ip+1);
if (dataMap[row][col]<0 || dataMap[row][col]>=dataSize)
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
}
}
int ii=0;
for (i=0; i< dataSize; i++) {
if (i<offset) {
//header! */
xmap[i]=-1;
ymap[i]=-1;
} else {
// ii=ibyte+128*32*ipacket;
isample=ii/nadc;
if (isample<nSamples) {
iadc=ii%nadc;
adc4 = (int)iadc/4;
ix=isample%sc_width;
iy=isample/sc_width;
if (adc4%2==0) {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2-1-iy;
} else {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2+iy;
}
}
ii++;
}
}
// iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
/* class jfrau_packet_header_t { */
/* public: */
/* unsigned char reserved[4]; */
/* unsigned char packetNumber[1]; */
/* unsigned char frameNumber[3]; */
/* unsigned char bunchid[8]; */
/* }; */
int getFrameNumber(char *buff){return *((int*)buff);};//*((int*)(buff+5))&0xffffff;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
*/
int getPacketNumber(char *buff){return 0;}//((*(((int*)(buff+4))))&0xff)+1;};
/* /\** */
/* Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
/* \param data pointer to the memory to be analyzed */
/* \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
/* \param dsize size of the memory slot to be analyzed */
/* \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found */
/* *\/ */
/* virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;}; */
/* /\** */
/* Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors! */
/* \param filebin input file stream (binary) */
/* \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
/* *\/ */
/* virtual char *readNextFrame(ifstream &filebin){ */
/* // int afifo_length=0; */
/* uint16_t *afifo_cont; */
/* int ib=0; */
/* if (filebin.is_open()) { */
/* afifo_cont=new uint16_t[dataSize/2]; */
/* while (filebin.read(((char*)afifo_cont)+ib,2)) { */
/* ib+=2; */
/* if (ib==dataSize) break; */
/* } */
/* if (ib>0) { */
/* iframe++; */
/* // cout << ib << "-" << endl; */
/* return (char*)afifo_cont; */
/* } else { */
/* delete [] afifo_cont; */
/* return NULL; */
/* } */
/* } */
/* return NULL; */
/* }; */
virtual char *readNextFrame(ifstream &filebin) {
int ff=-1, np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int &ff) {
int np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
char *data=new char[32*2*nSamples];
char *d=readNextFrame(filebin, ff, np, data);
if (d==NULL) {delete [] data; data=NULL;}
return data;
}
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
char *retval=0;
int nd;
int fnum = -1;
np=0;
int pn;
if (ff>=0)
fnum=ff;
if (filebin.is_open()) {
if (filebin.read(data, 32*2*nSamples) ){
// iframe++;
//ff=iframe;
return data;
}
}
return NULL;
};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){
if (dsize<32*2*nSamples) ndata=dsize;
else ndata=32*2*nSamples;
return data;
}
// virtual int setFrameNumber(int ff){iframe=ff};
int getPacketNumber(int x, int y) {return 0;};
};
#endif

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#ifndef MOENCH03TCTBDATA_H
#define MOENCH03TCTBDATA_H
#include "slsDetectorData.h"
class moench03TCtbData : public slsDetectorData<uint16_t> {
private:
int iframe;
int nadc;
int sc_width;
int sc_height;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench03TCtbData(int ns=5000): slsDetectorData<uint16_t>(400, 400, ns*2*32, NULL, NULL) , nadc(32), sc_width(25), sc_height(200) {
int row, col;
int isample;
int iadc;
int ix, iy;
int adc_nr[32]={300,325,350,375,300,325,350,375, \
200,225,250,275,200,225,250,275,\
100,125,150,175,100,125,150,175,\
0,25,50,75,0,25,50,75};
/* int adc_nr[32]={200,225,250,275,300,325,350,375,\ */
/* 0,25,50,75,100,125,150,175,\ */
/* 175,150,125,100,75,50,25,0,\ */
/* 375,350,325,300,275,250,225,200}; */
for (iadc=0; iadc<nadc; iadc++) {
for (int i=0; i<sc_width*sc_height; i++) {
col=adc_nr[iadc]+(i%sc_width);
if (iadc<16) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
dataMap[row][col]=(nadc*i+iadc)*2;
if (dataMap[row][col]<0 || dataMap[row][col]>=2*400*400)
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
int adc4;
for (int i=0; i<nx*ny; i++) {
isample=i/nadc;
iadc=i%nadc;
ix=isample%sc_width;
iy=isample/sc_width;
adc4 = (int)iadc/4;
// if (iadc<(nadc/2)) {
if (adc4%2==0) {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2-1-iy;
} else {
xmap[i]=adc_nr[iadc]+ix;
ymap[i]=ny/2+iy;
}
}
/* for (int i=0; i<nx*ny; i++) { */
/* isample=i/nadc; */
/* iadc=i%nadc; */
/* ix=isample%sc_width; */
/* iy=isample/sc_width; */
/* if (iadc<(nadc/2)) { */
/* xmap[i]=adc_nr[iadc]+ix; */
/* ymap[i]=ny/2-1-iy; */
/* } else { */
/* xmap[i]=adc_nr[iadc]+ix; */
/* ymap[i]=ny/2+iy; */
/* } */
/* } */
iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff){(void)buff; return iframe;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
virtual int getPacketNumber(char *buff)=0;
*/
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin){
// int afifo_length=0;
uint16_t *afifo_cont;
int ib=0;
if (filebin.is_open()) {
afifo_cont=new uint16_t[dataSize/2];
while (filebin.read(((char*)afifo_cont)+ib,2)) {
ib+=2;
if (ib==dataSize) break;
}
if (ib>0) {
iframe++;
// cout << ib << "-" << endl;
return (char*)afifo_cont;
} else {
delete [] afifo_cont;
return NULL;
}
}
return NULL;
};
};
#endif

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#ifndef MOENCH04RECDATA_H
#define MOENCH04RECDATA_H
#include "slsDetectorData.h"
//#define VERSION_V2
/**
@short structure for a Detector Packet or Image Header
@li frameNumber is the frame number
@li expLength is the subframe number (32 bit eiger) or real time exposure time in 100ns (others)
@li packetNumber is the packet number
@li bunchId is the bunch id from beamline
@li timestamp is the time stamp with 10 MHz clock
@li modId is the unique module id (unique even for left, right, top, bottom)
@li xCoord is the x coordinate in the complete detector system
@li yCoord is the y coordinate in the complete detector system
@li zCoord is the z coordinate in the complete detector system
@li debug is for debugging purposes
@li roundRNumber is the round robin set number
@li detType is the detector type see :: detectorType
@li version is the version number of this structure format
*/
typedef struct {
uint64_t frameNumber; /**< is the frame number */
uint32_t expLength; /**< is the subframe number (32 bit eiger) or real time exposure time in 100ns (others) */
uint32_t packetNumber; /**< is the packet number */
uint64_t bunchId; /**< is the bunch id from beamline */
uint64_t timestamp; /**< is the time stamp with 10 MHz clock */
uint16_t modId; /**< is the unique module id (unique even for left, right, top, bottom) */
uint16_t xCoord; /**< is the x coordinate in the complete detector system */
uint16_t yCoord; /**< is the y coordinate in the complete detector system */
uint16_t zCoord; /**< is the z coordinate in the complete detector system */
uint32_t debug; /**< is for debugging purposes */
uint16_t roundRNumber; /**< is the round robin set number */
uint8_t detType; /**< is the detector type see :: detectorType */
uint8_t version; /**< is the version number of this structure format */
uint64_t packetCaught[8]; /**< is the version number of this structure format */
} sls_detector_header;
class moench04ReceiverData : public slsDetectorData<uint16_t> {
private:
int iframe;
int nadc;
int sc_width;
int sc_height;
const int aSamples;
const int dSamples;
public:
/**
Implements the slsReceiverData structure for the moench02 prototype read out by a module i.e. using the slsReceiver
(160x160 pixels, 40 packets 1286 large etc.)
\param c crosstalk parameter for the output buffer
*/
moench04ReceiverData(int nas=5000, int nds=0): slsDetectorData<uint16_t>(400, 400, nas*2*32+sizeof(sls_detector_header)+nds*8), aSamples(nas), dSamples(nds) {
int nadc=32;
int sc_width=25;
int sc_height=200;
int adc_nr[32]={9, 8,11,10,13,12,15,14,1,0,3,2,5,4,7,6,23,22,21,20,19,18,17,16,31,30,29,28,27,26,25,24 };
int row, col;
int isample;
int iadc;
int ix, iy;
int npackets=40;
int i;
int adc4(0);
for (int ip=0; ip<npackets; ip++) {
for (int is=0; is<128; is++) {
for (iadc=0; iadc<nadc; iadc++) {
i=128*ip+is;
adc4=(int)iadc/4;
if (i<sc_width*sc_height) {
// for (int i=0; i<sc_width*sc_height; i++) {
col=(adc_nr[iadc]%16)*sc_width+(i%sc_width);
// if (adc4%2==0) {
if (iadc/16>0) {
row=199-i/sc_width;
} else {
row=200+i/sc_width;
}
dataMap[row][col]=sizeof(sls_detector_header)+(nadc*i+iadc)*2;//+16*(ip+1);
if (dataMap[row][col]<0 || dataMap[row][col]>=nSamples*2*32)
cout << "Error: pointer " << dataMap[row][col] << " out of range "<< endl;
}
}
}
}
int ipacket;
int ibyte;
int ii=0;
for (ibyte=0; ibyte<sizeof(sls_detector_header)/2; ibyte++){
xmap[ibyte]=-1;
ymap[ibyte]=-1;
}
/* int off=sizeof(sls_detector_header)/2; */
/* for (ibyte=0; ibyte<dataSize; ibyte++) { */
/* for (ipacket=0; ipacket<npackets; ipacket++) { */
/* for (ibyte=0; ibyte< 8192/2; ibyte++) { */
/* i=ipacket*8208/2+ibyte; */
/* isample=ii/nadc; */
/* if (isample<nSamples) { */
/* iadc=ii%nadc; */
/* adc4 = (int)iadc/4; */
/* ix=isample%sc_width; */
/* iy=isample/sc_width; */
/* if (adc4%2==0) { */
/* xmap[i+off]=adc_nr[iadc]+ix; */
/* ymap[i+off]=ny/2-1-iy; */
/* } else { */
/* xmap[i+off]=adc_nr[iadc]+ix; */
/* ymap[i+off]=ny/2+iy; */
/* } */
/* } */
/* ii++; */
/* // } */
/* } */
/* } */
iframe=0;
// cout << "data struct created" << endl;
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
/* class jfrau_packet_header_t { */
/* public: */
/* unsigned char reserved[4]; */
/* unsigned char packetNumber[1]; */
/* unsigned char frameNumber[3]; */
/* unsigned char bunchid[8]; */
/* }; */
int getFrameNumber(char *buff){return ((sls_detector_header*)buff)->frameNumber;};//*((int*)(buff+5))&0xffffff;};
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
*/
int getPacketNumber(char *buff){return ((sls_detector_header*)buff)->packetNumber;}//((*(((int*)(buff+4))))&0xff)+1;};
/* /\** */
/* Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func */
/* \param data pointer to the memory to be analyzed */
/* \param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot */
/* \param dsize size of the memory slot to be analyzed */
/* \returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found */
/* *\/ */
/* virtual char *findNextFrame(char *data, int &ndata, int dsize){ndata=dsize; setDataSize(dsize); return data;}; */
/* /\** */
/* Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors! */
/* \param filebin input file stream (binary) */
/* \returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete */
/* *\/ */
/* virtual char *readNextFrame(ifstream &filebin){ */
/* // int afifo_length=0; */
/* uint16_t *afifo_cont; */
/* int ib=0; */
/* if (filebin.is_open()) { */
/* afifo_cont=new uint16_t[dataSize/2]; */
/* while (filebin.read(((char*)afifo_cont)+ib,2)) { */
/* ib+=2; */
/* if (ib==dataSize) break; */
/* } */
/* if (ib>0) { */
/* iframe++; */
/* // cout << ib << "-" << endl; */
/* return (char*)afifo_cont; */
/* } else { */
/* delete [] afifo_cont; */
/* return NULL; */
/* } */
/* } */
/* return NULL; */
/* }; */
virtual char *readNextFrame(ifstream &filebin) {
int ff=-1, np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int &ff) {
int np=-1;
return readNextFrame(filebin, ff, np);
};
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np) {
char *data=new char[dataSize];
char *d=readNextFrame(filebin, ff, np, data);
if (d==NULL) {delete [] data; data=NULL;}
return data;
}
virtual char *readNextFrame(ifstream &filebin, int& ff, int &np, char *data) {
char *retval=0;
int nd;
int fnum = -1;
np=0;
int pn;
// cout << dataSize << endl;
if (ff>=0)
fnum=ff;
if (filebin.is_open()) {
if (filebin.read(data, dataSize) ){
ff=getFrameNumber(data);
np=getPacketNumber(data);
return data;
}
}
return NULL;
};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize){
if (dsize<dataSize) ndata=dsize;
else ndata=dataSize;
return data;
}
//int getPacketNumber(int x, int y) {return dataMap[y][x]/packetSize;};
};
#endif

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#ifndef SLSDETECTORDATA_H
#define SLSDETECTORDATA_H
#include <inttypes.h>
#include <iostream>
#include <fstream>
using namespace std;
template <class dataType>
class slsDetectorData {
protected:
const int nx; /**< Number of pixels in the x direction */
const int ny; /**< Number of pixels in the y direction */
int dataSize; /**<size of the data constituting one frame */
int **dataMap; /**< Array of size nx*ny storing the pointers to the data in the dataset (as offset)*/
dataType **dataMask; /**< Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required) */
int **dataROIMask; /**< Array of size nx*ny 1 if channel is good (or in the ROI), 0 if bad channel (or out of ROI) */
int *xmap;
int *ymap;
public:
/**
General slsDetectors data structure. Works for data acquired using the slsDetectorReceiver. Can be generalized to other detectors (many virtual funcs).
Constructor (no error checking if datasize and offsets are compatible!)
\param npx number of pixels in the x direction
\param npy number of pixels in the y direction (1 for strips)
\param dsize size of the data
\param dMap array of size nx*ny storing the pointers to the data in the dataset (as offset)
\param dMask Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required)
\param dROI Array of size nx*ny. The elements are 1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all 1s.
*/
slsDetectorData(int npx, int npy, int dsize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): nx(npx), ny(npy), dataSize(dsize) {
xmap=new int[dsize/sizeof(dataType)];
ymap=new int[dsize/sizeof(dataType)];
// if (dataMask==NULL) {
dataMask=new dataType*[ny];
for(int i = 0; i < ny; i++) {
dataMask[i] = new dataType[nx];
}
// }
// if (dataMap==NULL) {
dataMap=new int*[ny];
for(int i = 0; i < ny; i++) {
dataMap[i] = new int[nx];
}
// }
// if (dataROIMask==NULL) {
dataROIMask=new int*[ny];
for(int i = 0; i < ny; i++) {
dataROIMask[i] = new int[nx];
for (int j=0; j<nx; j++)
dataROIMask[i][j]=1;
}
// }
for (int ip=0; ip<dsize/sizeof(dataType); ip++){
xmap[ip]=-1;
ymap[ip]=-1;
}
setDataMap(dMap);
setDataMask(dMask);
setDataROIMask(dROI);
};
virtual ~slsDetectorData() {
for(int i = 0; i < ny; i++) {
delete [] dataMap[i];
delete [] dataMask[i];
delete [] dataROIMask[i];
}
delete [] dataMap;
delete [] dataMask;
delete [] dataROIMask;
delete [] xmap;
delete [] ymap;
};
/**
defines the data map (as offset) - no error checking if datasize and offsets are compatible!
\param dMap array of size nx*ny storing the pointers to the data in the dataset (as offset). If NULL (default),the data are arranged as if read out row by row (dataMap[iy][ix]=(iy*nx+ix)*sizeof(dataType);)
*/
void setDataMap(int **dMap=NULL) {
int ip=0;
int ix, iy;
if (dMap==NULL) {
for (iy=0; iy<ny; iy++) {
for (ix=0; ix<nx; ix++) {
dataMap[iy][ix]=(iy*nx+ix)*sizeof(dataType);
}
}
} else {
//cout << "set dmap "<< dataMap << " " << dMap << endl;
for (iy=0; iy<ny; iy++){
// cout << iy << endl;
for (ix=0; ix<nx; ix++) {
dataMap[iy][ix]=dMap[iy][ix];
// cout << ix << " " << iy << endl;
/*ip=dataMap[ix][iy]/sizeof(dataType);
xmap[ip]=ix;
ymap[ip]=iy;Annaa*/
}
}
}
for (iy=0; iy<ny; iy++){
for (ix=0; ix<nx; ix++) {
ip=dataMap[iy][ix]/sizeof(dataType);
xmap[ip]=ix;
ymap[ip]=iy;
}
}
// cout << "nx:" <<nx << " ny:" << ny << endl;
};
/**
defines the data mask i.e. the polarity of the data
\param dMask Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required)
*/
void setDataMask(dataType **dMask=NULL){
if (dMask!=NULL) {
for (int iy=0; iy<ny; iy++)
for (int ix=0; ix<nx; ix++)
dataMask[iy][ix]=dMask[iy][ix];
} else {
for (int iy=0; iy<ny; iy++)
for (int ix=0; ix<nx; ix++)
dataMask[iy][ix]=0;
}
};
/**
defines the region of interest and/or the bad channels mask
\param dROI Array of size nx*ny. The lements are 1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all 1s.
*/
void setDataROIMask(int **dROI=NULL){
if (dROI!=NULL) {
for (int iy=0; iy<ny; iy++)
for (int ix=0; ix<nx; ix++)
dataROIMask[iy][ix]=dROI[iy][ix];
} else {
for (int iy=0; iy<ny; iy++)
for (int ix=0; ix<nx; ix++)
dataROIMask[iy][ix]=1;
}
};
/**
Define bad channel or roi mask for a single channel
\param ix channel x coordinate
\param iy channel y coordinate (1 for strips)
\param i 1 if pixel is good (or in the roi), 0 if bad
\returns 1 if pixel is good, 0 if it's bad, -1 if pixel is out of range
*/
int setGood(int ix, int iy, int i=1) { if (ix>=0 && ix<nx && iy>=0 && iy<ny) dataROIMask[iy][ix]=i; return isGood(ix,iy);};
/**
Define bad channel or roi mask for a single channel
\param ix channel x coordinate
\param iy channel y coordinate (1 for strips)
\returns 1 if pixel is good, 0 if it's bad, -1 if pixel is out of range
*/
int isGood(int ix, int iy) { if (ix>=0 && ix<nx && iy>=0 && iy<ny) return dataROIMask[iy][ix]; else return -1;};
/**
Returns detector size in x,y
\param npx reference to number of channels in x
\param npy reference to number of channels in y (will be 1 for strips)
\returns total number of channels
*/
int getDetectorSize(int &npx, int &npy){npx=nx; npy=ny; return nx*ny;};
/** Returns the size of the data frame */
int getDataSize() {return dataSize;};
/** changes the size of the data frame */
int setDataSize(int d) {dataSize=d; return dataSize;};
virtual void getPixel(int ip, int &x, int &y) {x=xmap[ip]; y=ymap[ip];};
virtual dataType **getData(char *ptr, int dsize=-1) {
dataType **data;
int ix,iy;
data=new dataType*[ny];
for(int i = 0; i < ny; i++) {
data[i]=new dataType[nx];
}
if (dsize<=0 || dsize>dataSize) dsize=dataSize;
for (int ip=0; ip<(dsize/sizeof(dataType)); ip++) {
getPixel(ip,ix,iy);
if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
data[iy][ix]=getChannel(ptr,ix,iy);
}
}
return data;
};
virtual double **getImage(char *ptr, int dsize=-1) {
double **data;
int ix,iy;
data=new double*[ny];
for(int i = 0; i < ny; i++) {
data[i]=new double[nx];
}
if (dsize<=0 || dsize>dataSize) dsize=dataSize;
for (int ip=0; ip<(dsize/sizeof(dataType)); ip++) {
getPixel(ip,ix,iy);
if (ix>=0 && ix<nx && iy>=0 && iy<ny) {
data[iy][ix]=getValue(ptr,ix,iy);
}
}
return data;
};
/**
Returns the value of the selected channel for the given dataset. Virtual function, can be overloaded.
\param data pointer to the dataset (including headers etc)
\param ix pixel number in the x direction
\param iy pixel number in the y direction
\returns data for the selected channel, with inversion if required
*/
virtual dataType getChannel(char *data, int ix, int iy=0) {
dataType m=0, d=0;
if (ix>=0 && ix<nx && iy>=0 && iy<ny && dataMap[iy][ix]>=0 && dataMap[iy][ix]<dataSize) {
// cout << ix << " " << iy << " " ;
//cout << dataMap[ix][iy] << " " << (void*)data << " " << dataSize<< endl;
m=dataMask[iy][ix];
d=*((dataType*)(data+dataMap[iy][ix]));
}
return d^m;
};
/**
Returns the value of the selected channel for the given dataset. Virtual function, can be overloaded.
\param data pointer to the dataset (including headers etc)
\param ix pixel number in the x direction
\param iy pixel number in the y direction
\returns data for the selected channel, with inversion if required or -1 if its a missing packet
*/
virtual int getChannelwithMissingPackets(char *data, int ix, int iy) {
return 0;
};
/**
Returns the value of the selected channel for the given dataset as double.
\param data pointer to the dataset (including headers etc)
\param ix pixel number in the x direction
\param iy pixel number in the y direction
\returns data for the selected channel, with inversion if required as double
*/
virtual double getValue(char *data, int ix, int iy=0) {
/* cout << " x "<< ix << " y"<< iy << " val " << getChannel(data, ix, iy)<< endl;*/
return (double)getChannel(data, ix, iy);
};
/**
Returns the frame number for the given dataset. Purely virtual func.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff)=0;
/**
Returns the packet number for the given dataset. purely virtual func
\param buff pointer to the dataset
\returns packet number number
virtual int getPacketNumber(char *buff)=0;
*/
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). purely virtual func
\param data pointer to the memory to be analyzed
\param ndata reference to the amount of data found for the frame, in case the frame is incomplete at the end of the memory slot
\param dsize size of the memory slot to be analyzed
\returns pointer to the beginning of the last good frame (might be incomplete if ndata smaller than dataSize), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize)=0;
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the begin of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin)=0;
};
#endif

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#ifndef SLSRECEIVERDATA_H
#define SLSRECEIVERDATA_H
#include "slsDetectorData.h"
#include <cstring>
#include <stdlib.h> // exit()
template <class dataType>
class slsReceiverData : public slsDetectorData<dataType> {
public:
/**
slsReceiver data structure. Works for data acquired using the slsDetectorReceiver subdivided in different packets with headers and footers.
Inherits and implements slsDetectorData.
Constructor (no error checking if datasize and offsets are compatible!)
\param npx number of pixels in the x direction
\param npy number of pixels in the y direction (1 for strips)
\param np number of packets
\param psize packets size
\param dMap array of size nx*ny storing the pointers to the data in the dataset (as offset)
\param dMask Array of size nx*ny storing the polarity of the data in the dataset (should be 0 if no inversion is required, 0xffffffff is inversion is required)
\param dROI Array of size nx*ny. The elements are 1s if the channel is good or in the ROI, 0 is bad or out of the ROI. NULL (default) means all 1s.
*/
slsReceiverData(int npx, int npy, int np, int psize, int **dMap=NULL, dataType **dMask=NULL, int **dROI=NULL): slsDetectorData<dataType>(npx, npy, np*psize, dMap, dMask, dROI), nPackets(np), packetSize(psize) {};
/**
Returns the frame number for the given dataset. Virtual func: works for slsDetectorReceiver data (also for each packet), but can be overloaded.
\param buff pointer to the dataset
\returns frame number
*/
virtual int getFrameNumber(char *buff){return ((*(int*)buff)&(0xffffff00))>>8;};
/**
Returns the packet number for the given dataset. Virtual func: works for slsDetectorReceiver packets, but can be overloaded.
\param buff pointer to the dataset
\returns packet number number
*/
virtual int getPacketNumber(char *buff){return (*(int*)buff)&0xff;};
/**
Loops over a memory slot until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param data pointer to the memory to be analyzed
\param ndata size of frame returned
\param dsize size of the memory slot to be analyzed
\returns pointer to the first packet of the last good frame (might be incomplete if npackets lower than the number of packets), or NULL if no frame is found
*/
virtual char *findNextFrame(char *data, int &ndata, int dsize) {
char *retval=NULL, *p=data;
int dd=0;
int fn, fnum=-1, np=0, pnum=-1;
while (dd<=(dsize-packetSize)) {
pnum=getPacketNumber(p);
fn=getFrameNumber(p);
//cout <<"fnum:"<<fn<<" pnum:"<<pnum<<" np:"<< np << "\t";
if (pnum<1 || pnum>nPackets) {
//cout << "Bad packet number " << pnum << " frame "<< fn << endl;
retval=NULL;
np=0;
} else if (pnum==1) {
retval=p;
if (np>0)
/*cout << "*Incomplete frame number " << fnum << endl;*/
np=0;
fnum=fn;
} else if (fn!=fnum) {
if (fnum!=-1) {
/* cout << " **Incomplete frame number " << fnum << " pnum " << pnum << " " << getFrameNumber(p) << endl;*/
retval=NULL;
}
np=0;
}
p+=packetSize;
dd+=packetSize;
np++;
//cout <<"fnum:"<<fn<<" pnum:"<<pnum<<" np:"<< np << "\t";
// cout << pnum << " " << fn << " " << np << " " << dd << " " << dsize << endl;
if (np==nPackets){
if (pnum==nPackets) {
//cprintf(BG_GREEN, "Frame Found\n");
// cout << "Frame found!" << endl;
break;
} else {
//cprintf(BG_RED, "Too many packets for this frame! fnum:%d, pnum:%d np:%d\n",fnum,pnum,np);
cout << "Too many packets for this frame! "<< fnum << " " << pnum << endl;//cprintf(BG_RED,"Exiting\n");exit(-1);
retval=NULL;
}
}
}
if (np<nPackets) {
if (np>0){
//cprintf(BG_RED, "Too few packets for this frame! fnum:%d, pnum:%d np:%d\n",fnum,pnum,np);
cout << "Too few packets for this frame! "<< fnum << " " << pnum << " " << np <<endl;//cprintf(BG_RED,"Exiting\n");exit(-1);
}
}
ndata=np*packetSize;
// cout << "return " << ndata << endl;
return retval;
};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\returns pointer to the first packet of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin) {
char *data=new char[packetSize*nPackets];
char *retval=0;
int np=0, nd;
if (filebin.is_open()) {
while (filebin.read(data+np*packetSize,packetSize)) {
if (np==(nPackets-1)) {
retval=findNextFrame(data,nd,packetSize*nPackets);
np=nd/packetSize;
// cout << np << endl;
if (retval==data && np==nPackets) {
// cout << "-" << endl;
return data;
} else if (np>nPackets) {
cout << "too many packets!!!!!!!!!!" << endl;
delete [] data;
return NULL;
} else if (retval!=NULL) {
// cout << "+" << endl;;
for (int ip=0; ip<np; ip++)
memcpy(data+ip*packetSize,retval+ip*packetSize,packetSize);
}
} else if (np>nPackets) {
cout << "*******too many packets!!!!!!!!!!" << endl;
delete [] data;
return NULL;
} else {
// cout << "." << endl;;
np++;
}
}
}
delete [] data;
return NULL;
};
/**
Loops over a file stream until a complete frame is found (i.e. all packets 0 to nPackets, same frame number). Can be overloaded for different kind of detectors!
\param filebin input file stream (binary)
\param fnum frame number of frame returned
\returns pointer to the first packet of the last good frame, NULL if no frame is found or last frame is incomplete
*/
virtual char *readNextFrame(ifstream &filebin, int& fnum) {
char *data=new char[packetSize*nPackets];
char *retval=0;
int np=0, nd;
fnum = -1;
if (filebin.is_open()) {
while (filebin.read(data+np*packetSize,packetSize)) {
if (np==(nPackets-1)) {
fnum=getFrameNumber(data); //cout << "fnum:"<<fnum<<endl;
retval=findNextFrame(data,nd,packetSize*nPackets);
np=nd/packetSize;
// cout << np << endl;
if (retval==data && np==nPackets) {
// cout << "-" << endl;
return data;
} else if (np>nPackets) {
cout << "too many packets!!!!!!!!!!" << endl;
delete [] data;
return NULL;
} else if (retval!=NULL) {
// cout << "+" << endl;;
for (int ip=0; ip<np; ip++)
memcpy(data+ip*packetSize,retval+ip*packetSize,packetSize);
}
} else if (np>nPackets) {
cout << "*******too many packets!!!!!!!!!!" << endl;
delete [] data;
return NULL;
} else {
// cout << "." << endl;;
np++;
//cout<<"np:"<<np<<endl;
}
}
}
delete [] data;
return NULL;
};
virtual int* readNextFramewithMissingPackets(ifstream &filebin, int& fnum) {return NULL;}
virtual void getChannelArray(double* data, char* buffer){};
virtual int* readNextFrameOnlyData(ifstream &filebin, int& fnum) {return NULL;};
virtual int* decodeData(int* datain) {return NULL;};
virtual int getPacketNumber(int x, int y) {return 0;};
protected:
const int nPackets; /**<number of UDP packets constituting one frame */
const int packetSize; /**< size of a udp packet */
};
#endif