163 Commits

Author	SHA1	Message	Date
Dhanya Thattil	351f4626b3	roi max should be incremented by 1 for all versions of the file	2025-10-16 12:26:30 +02:00
Alice	1f46266183	clang-format	2025-10-01 20:25:27 +02:00
Alice	d3d9f760b3	updated parse_json to parse new master json file	2025-10-01 20:17:37 +02:00
Alice	474c35cc6b	Merge branch 'main' into dev/reduce	2025-09-08 15:39:27 +02:00
Alice	7926993bb2	reduction tests for python	2025-09-01 14:15:08 +02:00
Alice	b59277c4bf	3x3 reduction for general cluszter sizes	2025-08-19 12:37:55 +02:00
Alice	cb163c79b4	reduction to 2x2 clusters for general clusters	2025-08-18 18:23:15 +02:00
AliceMazzoleni99	f54e76e6bf	view is only allowed on l-value frame (#220) ... Vadym accidentally called view() directly on an R-value frame, which leads to a dangling view pointer. Adjusted code such that compiler throws an error if called on an R-value frame. Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2025-08-18 11:02:05 +02:00
Erik Fröjdh	1527a45cf3	Merge branch 'template_on_gain0' into dev/move_dim	2025-07-25 10:45:20 +02:00
froejdh_e	d6222027d0	move constructor for Ndim-1	2025-07-25 10:40:32 +02:00
Alice	1195a5e100	added drop dimension test, added file calibration.test.cpp	2025-07-25 10:18:55 +02:00
Alice	1347158235	templated calculate_pedestal with boolean template argument only_gain0, added drop_dimension to NDArray and reference pointer to data	2025-07-24 15:40:05 +02:00
froejdh_e	8c4d8b687e	using make_subview	2025-07-24 12:16:08 +02:00
froejdh_e	9a7713e98a	added g0 calibration, pedestal and pixel counting	2025-07-22 16:42:09 +02:00
Erik Fröjdh	fa3b7a5afe	Merge branch 'main' into fix/mh02-map	2025-07-16 17:03:31 +02:00
Erik Fröjdh	e95326faa1	Fix/remove cpp (#213) ... - Removed unused ClusterFile.cpp (code from before it was templated) - Updated the list of .cpp files in CMakeLists.txt to match alphabetic listing in the browser	2025-07-16 16:43:08 +02:00
froejdh_e	8e2346abf8	fixed pixel map for mh02	2025-07-16 15:54:29 +02:00
Erik Fröjdh	97dae4ac60	added empty() to ClusterVector and fixed docs (#209) ... - added ClusterVector::empty() to check if the vector is empty - Fixed generation of missing docs for ClusterVector	2025-06-27 17:00:46 +02:00
Erik Fröjdh	e3f4b34b72	Const element access and fixed comparing bug (#208) ... - Added const element access - Added const data* - Fixed bug comparing two Views of same size but different shapes closes #207	2025-06-27 14:13:51 +02:00
Erik Fröjdh	6ec8fbee72	migrated tags for tests and added missing raw files (#206) ... - No changes or evaluation of existing tests - Tags for including tests that require data is changed to **[.with-data]** and **--with-data** for C++ and python respectively - Minor update to docs - Added missing files to the test data repo	2025-06-26 17:11:20 +02:00
Alice	ff7312f45d	replaced fmt with LOG	2025-06-24 16:24:25 +02:00
Alice	df4dbb8fd0	fixed numpy test	2025-06-24 13:39:32 +02:00
Alice	c92be4bca2	added eiger quad test	2025-06-24 11:29:25 +02:00
Alice	664055de92	fixed quad structure	2025-06-23 17:27:13 +02:00
Alice	318e640639	only test over the public interface	2025-06-23 17:27:13 +02:00
Alice	9f8eee5d08	fixed python bindings - only read headers of modules that are in the roi	2025-06-16 11:07:00 +02:00
Alice	35114cde9d	fatal error did not open any subfiles	2025-06-13 18:12:47 +02:00
Alice	b13f864b2b	need n_modules	2025-06-13 17:01:13 +02:00
Alice	0f56846e3d	deleted some commented lines	2025-06-13 16:33:25 +02:00
Alice	be67bbab6b	extended DetectorGeometry class with find_geometry, update_geometry (refactoring)	2025-06-13 16:16:23 +02:00
Alice	bd7870e75a	review comments	2025-06-12 18:14:48 +02:00
Alice	75f63607fc	friend_test macro	2025-06-12 17:46:10 +02:00
Alice	cfe7c31fe4	changed data path of test data	2025-06-12 09:53:15 +02:00
Alice	19ecc82fff	solved merge conflict	2025-06-10 17:01:40 +02:00
Alice	f9751902a2	formatted main branch	2025-06-10 16:09:06 +02:00
Alice	ad7525cd02	considered num_udp_interafces for jungfrau and quad structure for eiger	2025-06-10 11:35:15 +02:00
Alice	87d8682b1e	added test cases	2025-06-06 11:31:39 +02:00
Alice	9c6e629298	only files within the ROI are opened & geometry always read in RawMasterFile	2025-06-04 16:34:40 +02:00
Erik Fröjdh	94ac58b09e	For 2025.5.22 release (#181) ... Co-authored-by: Patrick <patrick.sieberer@psi.ch> Co-authored-by: JulianHeymes <julian.heymes@psi.ch> Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch> Co-authored-by: Xiangyu Xie <45243914+xiangyuxie@users.noreply.github.com> Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch> Co-authored-by: AliceMazzoleni99 <alice.mazzoleni@psi.ch> Co-authored-by: Mazzoleni Alice Francesca <mazzol_a@pc17378.psi.ch> Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-05-22 11:40:39 +02:00
froejdh_e	9ecf4f4b44	merge	2025-05-22 11:23:57 +02:00
Erik Fröjdh	9e1b8731b0	RawSubFile support multi file access (#173) ... This PR is a fix/improvement to a problem that Jonathan had. (#156) The original implementation opened all subfiles at once witch works for normal sized datasets but fails at a certain point (thousands of files). - This solution uses RawSubFile to manage the different file indicies and only opens the file we need - Added logger.h from slsDetectorPackage for debug printing (in production no messages should be visible)	2025-05-22 11:00:03 +02:00
Erik Fröjdh	a6eebbe9bd	removed extra const on return type, added cast (#177) ... Fixed warnings on apple clang: - removed extra const on return type - added cast to suppress a float to double conversion warning	2025-05-20 15:27:38 +02:00
Erik Fröjdh	81588fba3b	linking to threads and removed extra ; (#176) ... - Fixing broken build of tests on RH8 by linking pthreads - Removed extra ; causing warnings with -Wpedantic	2025-05-06 17:18:54 +02:00
Erik Fröjdh	cf158e2dcd	Added scurve fitting (#168) ... - added scurve fitting with two different signs (scurve, scurve2) - at the moment no option to set initial parameters --------- Co-authored-by: JulianHeymes <julian.heymes@psi.ch>	2025-05-05 11:40:04 +02:00
Erik Fröjdh	12ae1424fb	consistent use of ssize_t instead of int64_t (#167) ... - Consistent use of ssize_t to avoid issues on 32 bit platforms and also mac with (long long int as ssize_t)	2025-04-25 15:52:02 +02:00
mazzol_a	f06e722dce	changes from PR review	2025-04-25 11:38:56 +02:00
Erik Fröjdh	7b5e32a824	Api extra (#166) ... Changes to be able to run the example notebooks: - Invert gain map on setting (multiplication is faster but user supplies ADU/energy) - Cast after applying gain map not to loose precision (Important for int32 clusters) - "factor" for ClusterFileSink - Cluster size available to be able to create the right file sink	2025-04-25 10:31:16 +02:00
froejdh_e	86d343f5f5	merged with developer	2025-04-23 11:45:04 +02:00
Erik Fröjdh	fd0196f2fd	Developer (#164) ... - State before merging the new cluster vector API --------- Co-authored-by: Patrick <patrick.sieberer@psi.ch> Co-authored-by: JulianHeymes <julian.heymes@psi.ch> Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch> Co-authored-by: Xiangyu Xie <45243914+xiangyuxie@users.noreply.github.com> Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch> Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-04-22 16:41:48 +02:00
Erik Fröjdh	4088b0889d	Merge branch 'main' into developer	2025-04-22 16:18:48 +02:00