Commit Graph

144 Commits

Author SHA1 Message Date
be7f510775 fix for burst mode when not in file 2025-06-10 10:42:43 +02:00
56fa6f6bfb added counter mask, fixed adc mask data type, removed redundant scan parameter parsing 2025-06-10 09:25:20 +02:00
ca4d392b2f dbit offset and transceiver mask
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2025-06-09 16:03:55 +02:00
3b65e92cb7 added num interfaces and ten giga enable 2025-06-09 15:14:35 +02:00
755a8fb2b7 added exptime, period in hdf5, also added print for chrono and StringTo 2025-06-09 14:41:07 +02:00
dc7f6d44f2 fixed master h5
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2025-06-09 00:41:21 +02:00
480e28c927 wip at fixing hdf5 master file
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2025-06-06 16:36:40 +02:00
a6a02249bc refactoring, removing redundant functiosn to read header fields 2025-06-05 16:17:22 +02:00
a3f831dc9e efficiently read in one hyperslab read instead of multiple reads in a loop
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2025-06-05 00:38:27 +02:00
76b8872fe6 refactored a bit 2025-06-05 00:11:24 +02:00
55236ce6cc todo minor
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2025-06-04 16:58:09 +02:00
e7d3e667b0 should work for other multiple frame reads 2025-06-04 16:54:18 +02:00
d9cbf0f481 able to get headers from multiple modules as well 2025-06-04 15:59:27 +02:00
5681e18403 merge from latest developer
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2025-06-03 11:24:37 +02:00
froejdh_e
9ecf4f4b44 merge
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2025-05-22 11:23:57 +02:00
Erik Fröjdh
9e1b8731b0 RawSubFile support multi file access (#173)
This PR is a fix/improvement to a problem that Jonathan had. (#156) The
original implementation opened all subfiles at once witch works for
normal sized datasets but fails at a certain point (thousands of files).

- This solution uses RawSubFile to manage the different file indicies
and only opens the file we need
- Added logger.h from slsDetectorPackage for debug printing (in
production no messages should be visible)
2025-05-22 11:00:03 +02:00
Erik Fröjdh
a6eebbe9bd removed extra const on return type, added cast (#177)
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Fixed warnings on apple clang:

- removed extra const on return type
- added cast to suppress a float to double conversion warning
2025-05-20 15:27:38 +02:00
Erik Fröjdh
81588fba3b linking to threads and removed extra ; (#176)
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- Fixing broken build of tests on RH8 by linking pthreads
- Removed extra ; causing warnings with -Wpedantic
2025-05-06 17:18:54 +02:00
Erik Fröjdh
cf158e2dcd Added scurve fitting (#168)
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- added scurve fitting with two different signs (scurve, scurve2)
- at the moment no option to set initial parameters

---------

Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
2025-05-05 11:40:04 +02:00
Erik Fröjdh
12ae1424fb consistent use of ssize_t instead of int64_t (#167)
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- Consistent use of ssize_t to avoid issues on 32 bit platforms and also
mac with (long long int as ssize_t)
2025-04-25 15:52:02 +02:00
mazzol_a
f06e722dce changes from PR review 2025-04-25 11:38:56 +02:00
Erik Fröjdh
7b5e32a824 Api extra (#166)
Changes to be able to run the example notebooks: 

- Invert gain map on setting (multiplication is faster but user supplies
ADU/energy)
- Cast after applying gain map not to loose precision (Important for
int32 clusters)
- "factor" for ClusterFileSink 
- Cluster size available to be able to create the right file sink
2025-04-25 10:31:16 +02:00
froejdh_e
86d343f5f5 merged with developer
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2025-04-23 11:45:04 +02:00
Erik Fröjdh
fd0196f2fd Developer (#164)
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- State before merging the new cluster vector API

---------

Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>
Co-authored-by: Xiangyu Xie <45243914+xiangyuxie@users.noreply.github.com>
Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch>
Co-authored-by: siebsi <sieb.patr@gmail.com>
2025-04-22 16:41:48 +02:00
Erik Fröjdh
4088b0889d Merge branch 'main' into developer 2025-04-22 16:18:48 +02:00
froejdh_e
c6e8e5f6a1 inverted gain map 2025-04-22 16:16:27 +02:00
froejdh_e
b501c31e38 added missed commit 2025-04-22 15:22:47 +02:00
Erik Fröjdh
326941e2b4 Custom base for decoding ADC data (#163)
New function apply_custom_weights (can we find a better name) that takes
a uint16 and a NDView<double,1> of bases for the conversion. For each
supplied weight it is used as base (instead of 2) to convert from bits
to a double.

---------

Co-authored-by: siebsi <sieb.patr@gmail.com>
2025-04-22 15:20:46 +02:00
mazzol_a
177459c98a added multithreaded cluster finder test
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2025-04-17 17:09:53 +02:00
Mazzoleni Alice Francesca
c49a2fdf8e removed cluster_2x2 and cluster3x3 specializations
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2025-04-16 16:40:42 +02:00
Mazzoleni Alice Francesca
d4050ec557 enum is now enum class 2025-04-15 14:57:25 +02:00
Mazzoleni Alice Francesca
1174f7f434 fixed calculate eta 2025-04-15 13:18:25 +02:00
froejdh_e
8d8182c632 qMerge branch 'testing_clusters' of github.com:slsdetectorgroup/aare into testing_clusters 2025-04-15 08:05:12 +02:00
froejdh_e
5f34ab6df1 minor comment 2025-04-15 08:05:05 +02:00
Erik Fröjdh
5c8a5099fd Merge branch 'api_cluster_vector' into testing_clusters 2025-04-14 16:40:47 +02:00
froejdh_e
7c93632605 tests and fix 2025-04-14 16:38:25 +02:00
Mazzoleni Alice Francesca
54def26334 added ClusterFile tests fixed some bugs in ClusterFile
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2025-04-14 15:48:09 +02:00
Erik Fröjdh
a59e9656be Making RawSubFile usable from Python (#158)
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- Removed a printout left from debugging
- return also header when reading
- added read_n 
- check for error in ifstream
2025-04-11 16:54:21 +02:00
Mazzoleni Alice Francesca
15e52565a9 dont convert to byte 2025-04-11 14:35:20 +02:00
froejdh_e
113f34cc98 fixes 2025-04-10 16:50:04 +02:00
Mazzoleni Alice Francesca
53a90e197e added additional tests
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2025-04-10 10:41:58 +02:00
Mazzoleni Alice Francesca
76f050f69f solved merge conflict
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2025-04-10 09:21:50 +02:00
Erik Fröjdh
8b0eee1e66 fixed warnings and removed ambiguous read_frame (#154)
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Fixed warnings:
- unused variable in Interpolator
- Narrowing conversions uint64-->int64

Removed an ambiguous function from JungfrauDataFile
- NDarry read_frame(header&=nullptr)
- Frame read_frame()

NDArray and NDView size() is now signed
2025-04-09 17:54:55 +02:00
Erik Fröjdh
f16273a566 Adding support for Jungfrau .dat files (#152)
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closes #150 

**Not addressed in this PR:** 

- pixels_per_frame, bytes_per_frame and tell should be made cost in
FileInterface
2025-04-08 15:31:04 +02:00
Mazzoleni Alice Francesca
a12e43b176 underlying container of ClusterVcetor is now a std::vector 2025-04-07 12:27:44 +02:00
Mazzoleni Alice Francesca
9de84a7f87 added some python tests
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2025-04-04 17:19:15 +02:00
Mazzoleni Alice Francesca
885309d97c fix build
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2025-04-03 17:14:28 +02:00
Mazzoleni Alice Francesca
de9fc16e89 generalize is_selected 2025-04-03 09:28:54 +02:00
Mazzoleni Alice Francesca
50eeba4005 restructured GainMap to have own class and generalized
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2025-04-02 17:58:26 +02:00
Mazzoleni Alice Francesca
61af1105a1 templated eta and updated test 2025-04-02 14:42:38 +02:00