283 Commits

Include renames

Author	SHA1	Message	Date
mazzol_a	b73f3b723f	added test for apply_remap	2026-09-08 12:34:28 +02:00
mazzol_a	f8eeca2f7a	python bindings for strixel remap	2026-09-07 22:53:58 +02:00
mazzol_a	a3cce166f0	solved merge conflict	2026-09-02 23:26:15 +02:00
Erik Fröjdh	eddb919328	FastPedestal + optimizations in the cluster finder (#341) ... Optimized pedestal tracking with FastPedestal and performance improvements to the cluster finder. - ~2x faster hitting 14k FPS on benchmark dataset on 16 core threadripper pro **Changes** - No bounds check on interior of frame. (only within half of a cluster) (~15% improvement) - Cache threshold (std*n_rms) Biggest improvement comes from not computing std for each access - Cache pedestal subtracted frame - Switched to FastPedestal which assumes we reached steady state **Things tried but rejected:** - Always store cluster values, commit on val==max (~15% drop in frame rate) **Options** - using 16 bit clusters and 16 bit pedestal. (slows down the single threaded case but allow us to reach 12k with multi threading) **Other notes on performance** - Passing in memory frames from python and doing nothing: 0.8us/frame - Passing + pedestal subtraction: 28us/frame - Passing + pedestal + cluster finding (no store): 652us/frame - Passing + pedestal + cluster finding: 886 us/frame	2026-09-01 18:41:12 +02:00
hinger_v	05b4219f6e	Edit doc strings	2026-09-01 14:28:13 +02:00
hinger_v	4880b6e449	Remove chip_id dependent generators	2026-09-01 13:50:45 +02:00
hinger_v	c511231d2a	Template SensorConfig on number of strixel groups and make it std::array	2026-08-31 20:10:06 +02:00
hinger_v	1816b0c3ab	Add test cases for bond shift and rotation, update description of test structure	2026-08-31 19:35:44 +02:00
mazzol_a	152ef2e58c	Merge branch 'main' into dev/strixels/remap_simple	2026-08-26 17:37:41 +02:00
mazzol_a	bffeab15f4	added to documentation	2026-08-26 17:33:49 +02:00
hinger_v	69c2cacbd8	Fix compilation errors	2026-08-25 16:10:18 +02:00
Erik Fröjdh	85f9d0176a	Dev/guess clusters (#355) ... - exposing ClusterVector::empty in python - added member guess_n_clusters	2026-08-25 09:15:38 +02:00
Erik Fröjdh	26d11f74a8	Fix/expand const buffer (#354) ... Minor API change: - NDView<T> implicitly converts to NDView<const T> (as std::span in C++20) - expand4to8bit and expand24to32bit now takes a view over const uint8_t to show that the input is not changes closes #291	2026-08-25 08:51:41 +02:00
hinger_v	16bce7df47	Merge branch 'main' into dev/strixels/remap_simple	2026-08-24 19:07:46 +02:00
hinger_v	fc871377a0	Add first template for InclusiveROI unit tests	2026-08-24 18:31:21 +02:00
hinger_v	d7addfba3e	Make gap_rows size_t	2026-08-24 18:30:29 +02:00
hinger_v	a0a8fb6341	Remove designated initializers (C++20 -> C++17)	2026-08-21 17:05:41 +02:00
hinger_v	794275fa62	Rename all to 'StrixepPixelRemap...'	2026-08-21 14:02:09 +02:00
hinger_v	99e4baffd2	Adapt algorithm to reflect new mirroring definition	2026-08-20 17:02:53 +02:00
hinger_v	13b9f288a0	Rework ROI mirroring to clarify intent: Mirror on an axis	2026-08-20 16:49:22 +02:00
hinger_v	57e035abc3	Format	2026-08-20 14:44:25 +02:00
hinger_v	cb76a948e4	Merge remote-tracking branch 'refs/remotes/origin/dev/strixels/remap_simple' into dev/strixels/remap_simple	2026-08-20 13:55:30 +02:00
hinger_v	605c28bc19	Fix names of format helpers and remove unused	2026-08-20 12:30:11 +02:00
Erik Fröjdh	fef57c13c9	added const overload for NDArray::view() (#351) ... - Added missing const T overload for NDArray::view() - Tests	2026-08-19 16:21:37 +02:00
mazzol_a	e96778909e	Merge branch 'main' into dev/strixels/remap_simple	2026-08-19 11:47:39 +02:00
Erik Fröjdh	aa39470686	Removed unused DynamicCluster (#346) ... - Removed unused DynamicCluster - Removed commented out references to ClusterFileV2	2026-08-14 11:11:43 +02:00
Erik Fröjdh	4f6b69fba6	Removing deprecated use of lmfit (#344) ... Removed the lmfit based fitting and the old API for calling functions closes #296	2026-08-14 10:31:07 +02:00
Erik Fröjdh	e26db97b5c	Prototype multi threaded file reader (#343) ... - Reading files from nfs shares tops out at ~1GB/s for single threaded reads. - MultiThreadedFileReader uses our File wrapper to read a generic file in parallel - Placed in aare::experimental to show that it's not production ready	2026-08-11 15:28:54 +02:00
hinger_v	4bfe7eceea	InclusiveROI comment	2026-07-24 11:47:25 +02:00
hinger_v	13f8c9ea80	Document generators	2026-07-22 15:52:58 +02:00
hinger_v	98cdc6ba08	Refactoring and simplifications: ... - Adjust for reduced remap result struct - Add predefined SensorConfigs - Move combine_group_maps to implementation detail of RemapGenerate - Remove apply_rotation_shift and Rotation flip (have become superfluous)	2026-07-22 14:34:47 +02:00
hinger_v	9b5a15f2a4	Consistently add briefs	2026-07-21 16:13:15 +02:00
hinger_v	c5ccd44a4c	Refactoring suggestion for remap result (better doc)	2026-07-21 16:04:41 +02:00
hinger_v	857059cdaf	Fix duplicate include	2026-07-21 15:46:09 +02:00
hinger_v	81b91fb959	Refactoring suggestion for mapping result (reduced + doc)	2026-07-21 15:45:39 +02:00
hinger_v	9a63c9ac94	Refactoring suggestion for remap result (correct comments)	2026-07-21 15:22:25 +02:00
hinger_v	f09ede2646	Refactoring suggestion for mapping result	2026-07-21 15:00:36 +02:00
hinger_v	9344cea819	Improve documentation of structs in defs and rename SensorPlacement -> SensorModulePlacement	2026-07-17 15:51:16 +02:00
hinger_v	9bc4a4d6a9	Delete legacy configs	2026-07-17 14:23:21 +02:00
hinger_v	6b0598cd30	Move SensorPixelGeometry to SensorConfig and rename group-specific entities to reflect independence of sensor	2026-07-17 14:16:50 +02:00
hinger_v	67690aacf9	Fix only one SensorPlacement also in RemapGenerate.hpp	2026-07-17 11:36:23 +02:00
hinger_v	d3e337d061	Fix compiler warning -> ssize_t	2026-07-16 19:39:24 +02:00
hinger_v	1b05488173	Separate flat_index < 0 from >= input.size() and throw only at the latter	2026-07-16 19:30:02 +02:00
hinger_v	14bfc19b6a	Rework RemapAlgorithm.hpp according to comments ... - Add assert to flip - Only one SensorPlacement for strixel_to_pixel_maps - Pass order_map as NDView to ApplyRemap Additional: - Check output.shape() matches order_map.shape (correct buffer allocation) - Chash nrows and ncols - pass NDViews by value (copying is cheap and it makes the intent more clear that it only takes a snapshot of the arrays	2026-07-16 19:21:09 +02:00
hinger_v	a6927310a5	SImplify and document according to comments	2026-07-16 12:15:01 +02:00
hinger_v	98385902df	Merge branch 'main' into dev/strixels/remap_simple	2026-07-16 11:05:30 +02:00
hinger_v	afd92ac457	Bugfix: Separate Rotation and Routing	2026-07-16 11:04:43 +02:00
3 people	4aadb6f7f0	refactor: hide Minuit2 from aare's public API (#331) ... - Move Chi2.hpp from include/aare/ to src/ (private) - Pimpl on FitModel<Model>: MnUserParameters/MnStrategy behind opaque src/FitModelImpl.hpp, no Minuit2 includes in public headers - Move fit_pixel/fit_3d bodies to Fit.cpp with explicit instantiations for all 8 models; drop FCN template param from public API - CMake: aare::Minuit2 wrapped in $<BUILD_INTERFACE:...> (hidden from exported targets, same pattern as lmfit), MINUIT2_INSTALL OFF, Chi2.hpp removed from PUBLICHEADERS - Update python bindings and benchmark callsites accordingly --------- Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch> Co-authored-by: Alice <alice.mazzoleni@psi.ch>	2026-07-02 16:04:22 +02:00
mazzol_a	b4686e6b85	added moench05 defs (#333) ... - add moench05 chip/chiptestboard defs	2026-06-26 17:43:06 +02:00
Erik Fröjdh	b4b28fc9e0	len() and pedestal subtraction (#328) ... Collection of small improvements in usability: - NDView works for large arrays - Direct subtraction of Pedestal from np.array - len() support for python bindings of files	2026-06-15 11:38:06 +02:00