83 Commits

Author	SHA1	Message	Date
Mazzoleni Alice Francesca	a12e43b176	underlying container of ClusterVcetor is now a std::vector	2025-04-07 12:27:44 +02:00
Mazzoleni Alice Francesca	9de84a7f87	added some python tests	2025-04-04 17:19:15 +02:00
Mazzoleni Alice Francesca	248d25486f	refactored python files	2025-04-03 16:38:12 +02:00
Mazzoleni Alice Francesca	a24bbd9cf9	started to do python refactoring	2025-04-03 11:56:25 +02:00
Mazzoleni Alice Francesca	4240942cec	solved merge conflict	2025-04-01 17:48:48 +02:00
Erik Fröjdh	a42c0d645b	added roi, noise and gain (#143) ... - Moved definitions of Cluster_2x2 and Cluster_3x3 to it's own file - Added optional members for ROI, noise_map and gain_map in ClusterFile **API:** After creating the ClusterFile the user can set one or all of: roi, noise_map, gain_map ```python f = ClusterFile(fname) f.set_roi(roi) #aare.ROI f.set_noise_map(noise_map) #numpy array f.set_gain_map(gain_map) #numpy array ``` **When reading clusters they are evaluated in the order:** 1. If ROI is enabled check that the cluster is within the ROI 1. If noise_map is enabled check that the cluster meets one of the conditions - Center pixel above noise - Highest 2x2 sum above 2x noise - 3x3 sum above 3x noise 1. If gain_map is set apply the gain map before returning the clusters (not used for noise cut) **Open questions:** 1. Check for out of bounds access in noise and gain map? closes #139 closes #135 closes #90	2025-04-01 14:31:25 +02:00
Erik Fröjdh	b529b6d33b	Merge branch 'main' into developer	2025-03-19 19:29:15 +01:00
Erik Fröjdh	11cd2ec654	Interpolate (#137) ... - added eta based interpolation	2025-03-18 17:45:38 +01:00
froejdh_e	e59a361b51	removed workspace	2025-03-17 15:23:55 +01:00
froejdh_e	332bdeb02b	modified algo	2025-03-14 11:07:09 +01:00
froejdh_e	5614cb4673	WIP	2025-03-05 17:40:08 +01:00
froejdh_e	8ae6bb76f8	removed warnings added clang-tidy	2025-02-21 11:18:39 +01:00
Xiangyu Xie	1d2c38c1d4	Enable VarClusterFinder (#134) ... Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch>	2025-02-19 16:11:24 +01:00
Erik Fröjdh	b7a47576a1	Multi threaded fitting and returning chi2 (#132) ... Co-authored-by: Patrick <patrick.sieberer@psi.ch> Co-authored-by: JulianHeymes <julian.heymes@psi.ch> Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>	2025-02-19 07:19:59 +01:00
Erik Fröjdh	fc1c9f35d6	Merge branch 'main' into developer	2025-02-18 21:52:20 +01:00
Erik Fröjdh	6a83988485	Added chi2 to fit results (#131) ... - fit_gaus and fit_pol1 now return a dict - calculate chi2 after fit - cleaned up code	2025-02-18 21:13:27 +01:00
Erik Fröjdh	dadf5f4869	Added fitting, fixed roi etc (#129) ... Co-authored-by: Patrick <patrick.sieberer@psi.ch> Co-authored-by: JulianHeymes <julian.heymes@psi.ch>	2025-02-12 16:50:31 +01:00
Erik Fröjdh	7309cff47c	Added fitting with lmfit (#128) ... - added stand alone fitting using: https://jugit.fz-juelich.de/mlz/lmfit.git - fit_gaus, fit_pol1 with and without errors - multi threaded fitting --------- Co-authored-by: JulianHeymes <julian.heymes@psi.ch>	2025-02-12 16:35:48 +01:00
Erik Fröjdh	c0c5e07ad8	added decoding of adc_sar_04 (#127)	2025-02-12 16:17:32 +01:00
Erik Fröjdh	d86cb533c8	Fix minor warnings (#126) ... - Unused variables - signed vs. unsigned - added -flto=auto	2025-02-11 11:48:01 +01:00
Erik Fröjdh	4c750cc3be	Fixing ROI read of RawFile (#125) ... - Bugfixes - New abstraction for detector geometry - Tests for updating geo with ROI	2025-02-11 11:08:22 +01:00
Erik Fröjdh	5a3ca2ae2d	Decoding for ADC SAR 05 64->16bit (#124) ... Co-authored-by: Patrick <patrick.sieberer@psi.ch>	2025-02-05 14:40:26 +01:00
froejdh_e	6cde968c60	summing 2x2	2025-01-15 16:12:06 +01:00
froejdh_e	f6d736facd	docs for ClusterFile	2025-01-15 09:15:41 +01:00
froejdh_e	d0f435a7ab	bounds checking on subfiles	2025-01-10 19:02:50 +01:00
froejdh_e	7ce02006f2	clear pedestal	2025-01-10 17:26:23 +01:00
froejdh_e	7550a2cb97	fixing read bug	2025-01-10 15:33:56 +01:00
froejdh_e	caf7b4ecdb	added docs for ClusterFinderMT	2025-01-10 10:22:04 +01:00
froejdh_e	cc95561eda	MultiThreaded Cluster finder	2025-01-09 16:53:22 +01:00
froejdh_e	dc9e10016d	WIP	2025-01-08 16:45:24 +01:00
froejdh_e	acdce8454b	moved pd to double	2025-01-07 15:01:43 +01:00
froejdh_e	e6098c02ef	bumped version	2024-12-16 14:24:46 +01:00
froejdh_e	f88b53387f	WIP	2024-12-12 17:58:04 +01:00
froejdh_e	a0f481c0ee	mod pedestal	2024-12-12 14:34:10 +01:00
froejdh_e	b3a9e9576b	WIP	2024-12-11 16:27:36 +01:00
froejdh_e	60534add92	WIP	2024-12-11 09:54:33 +01:00
froejdh_e	7f2a23d5b1	accumulating clusters in one array	2024-12-10 22:00:12 +01:00
froejdh_e	6a150e8d98	WIP	2024-12-10 17:21:05 +01:00
Erik Fröjdh	659f1f36c5	AARE_INSTALL_PYTHONEXT (#109) ... - added AARE_INSTALL_PYTHONEXT option to install also python files in aare folder	2024-11-29 15:28:02 +01:00
Dhanya Thattil	2e4a491d7a	CMAKE_INSTALL_PREFIX not needed to specify destination folder and removed	2024-11-29 14:38:32 +01:00
Dhanya Thattil	fdce2f69b9	python 3.10 required in cmake	2024-11-29 11:07:05 +01:00
froejdh_e	115dfc0abf	bugfix on iteration and returning master file	2024-11-28 21:14:40 +01:00
Dhanya Thattil	31b834c3fd	added AARE_INSTALL_PYTHONEXT option to install python in make install, which also installs the python files in the aare folder	2024-11-28 15:18:13 +01:00
froejdh_e	8bf9ac55ce	modified read_n also for File and RawFile	2024-11-27 09:31:57 +01:00
froejdh_e	8e3d997bed	read_n returns remaining frames	2024-11-26 12:07:17 +01:00
JulianHeymes	d48482e9da	Modified moench05 transform: new firmware (moench05), legacy firmware (moench05_old), 1g readout (moench05_1g)	2024-11-25 16:39:08 +01:00
Erik Fröjdh	9f7cdbcb48	conversion warnings	2024-11-18 18:18:55 +01:00
Erik Fröjdh	17f8d28019	frame reading for cluster file	2024-11-15 16:13:46 +01:00
Erik Fröjdh	e77b615293	Added expression templates (#98) ... - Works with NDArray - Works with NDView	2024-11-15 15:17:52 +01:00
Erik Fröjdh	0d058274d5	WIP	2024-11-14 17:03:16 +01:00