Commit Graph

418 Commits

Author SHA1 Message Date
10483393ee Changed rounding in the cluster finder to use lround to ensure the result is an integer
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2026-01-20 16:48:11 +01:00
7bee7db692 Added python bindings for 21x21 clusters for debugging
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2026-01-20 16:25:48 +01:00
froejdh_e
bf24122db8 added rounding 2026-01-20 15:40:26 +01:00
f79ee55430 fixed parsing of dynamic range (#268)
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1. fixed parsing of dynamic range (bug which I added during refactoring)
2. added tests for bitdepth!
3. updated path for test file
2026-01-19 16:54:19 +01:00
froejdh_e
dceda21496 fixed parsing of dynamic range 2026-01-19 15:20:37 +01:00
055feb2290 Rewrote the multithreading to fix frame loss
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2026-01-06 14:09:51 +01:00
Erik Fröjdh
c0357e2020 Improvements to NDArray (#258)
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- Removed redundant arr.value(ix,iy...) on NDArray use arr(ix,iy...)
- Removed Print/Print_some/Print_all form NDArray (operator << still
works)
- Added const* version of .data()
- Comment for documentation
- Some extra tests
2025-12-19 14:49:41 +01:00
dfb29b719f fixed out of bounds in test (#259)
- fixed test (out of bounds access)
2025-12-19 13:15:49 +01:00
Erik Fröjdh
7f3123d68f Added parsing of exptime and period from master files (#256)
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- New aare:to_string/string_to similar to what we have in
slsDetectorPackage
- Added members period and exptime to RawMasterFile
- Parsing exposure time and period for json and raw master file formats
- Parsing of RawMasterFile from string stream to enable test without
files

Comments:

- to_string is at the moment not a public header. Can make it later if
needed. This gives us full freedom with the API
- FileConfig should probably be deprecated need to look into it.
Meanwhile removed python bindings and string conv
2025-12-18 17:04:12 +01:00
fb95e518b4 Dev/interpolation documentation (#255)
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- added transform_eta_values for easier debugging more control for the
user
- updated Documentation
2025-12-16 13:06:28 +01:00
Erik Fröjdh
80a2b02345 Dev/decode my302 (#254)
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This PR adds support for decoding digital data from the my320 test chip.
- Added BitOffset (strong type)
- Expand 24 to 32 bit 
- Python bindings for decoding my302
- Improved docs
2025-12-09 18:27:02 +01:00
e795310b16 fixed tests (#252)
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- fixed failed tests 
- removed import of pickle, scipy 
- still requires boost_histogram, pytest_check

Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>
2025-11-28 11:28:13 +01:00
1d8b68bf75 Run catch2 tests in CI (#253)
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- Build and run tests in CI
- Added macOS builds (and tests)
- Renamed workflow to build_with_docs.yml
2025-11-27 08:58:24 +01:00
Erik Fröjdh
cf53922bd3 restrict upload artifact 2025-11-26 20:21:57 +01:00
Erik Fröjdh
13cffb1ea8 WIP 2025-11-26 20:11:38 +01:00
Erik Fröjdh
bea373a112 with file 2025-11-26 20:09:05 +01:00
Erik Fröjdh
a66ce15a6c renamed workflow and added macos-latest 2025-11-26 20:07:32 +01:00
Erik Fröjdh
44fd015cfe added catch2 to dev env 2025-11-26 20:00:03 +01:00
Erik Fröjdh
6fe822d5dd WIP 2025-11-26 19:56:53 +01:00
Erik Fröjdh
8ed874a679 using tests 2025-11-26 19:54:43 +01:00
root
c035491b63 Added ability to save a cluster larger than we search for 2025-11-25 14:20:55 +01:00
dd5ed138cf Dev/print filepath in error (#251)
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2025-11-25 11:25:44 +01:00
8201c5e999 Fix/mythenfilereading (#250)
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Add counter mask as member of RawFile
BugFix: temporarily handle -1 for ROI in mythenfile
2025-11-24 12:29:08 +01:00
03af5927ad Release 2025.11.21 (#249)
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- Updated VERSION and script 
- Updated release notes
2025.11.21
2025-11-21 16:34:57 +01:00
Erik Fröjdh
452cfcb60f updated release notes 2025-11-21 16:17:04 +01:00
Erik Fröjdh
e8402d9d36 updated version and version script 2025-11-21 16:14:05 +01:00
a9de336817 added license (#247)
- Added LICENSE file
- Added SPX identifier to source files
2025-11-21 15:11:30 +01:00
6f7cb4ae30 Merge branch 'main' into dev/license 2025-11-21 14:52:54 +01:00
267ca87ab0 Dev/rosenblatttransform (#241)
- added rosenblatttransform 
- added 3x3 eta methods 
- interpolation can be used with various eta functions
- added documentation for interpolation, eta calculation 
- exposed full eta struct in python 
- disable ClusterFinder for 2x2 clusters 
- factory function for ClusterVector

---------

Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>
Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>
2025-11-21 14:48:46 +01:00
Erik Fröjdh
5dbb969bcc Merge branch 'dev/license' of github.com:slsdetectorgroup/aare into dev/license 2025-11-21 14:45:12 +01:00
Erik Fröjdh
d58d8ea82f added comment in readme 2025-11-21 14:44:54 +01:00
f61f76ccf7 changed License in update_version.py added to etc
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2025-11-21 10:29:12 +01:00
Erik Fröjdh
200ae91622 also hpp 2025-11-21 10:14:14 +01:00
Erik Fröjdh
53aed8d8c6 added license 2025-11-20 09:01:28 +01:00
7fb500c44c Dev/expose sum 2x2 to python (#238)
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Saverio requested that max_sum_2x2 exposes index information in  python 
- max_sum_2x2 returns a corner as index
- replaced eta corner with corner enum class
- max_sum_2x2 now returns index as well in python 
- added link to Documenation in README

Note: Some Tests fail in EtaCalculation due to previous PR about
updating Eta 2x2 will fix in other PR
2025-10-27 20:04:16 +01:00
8989d2eb4a Merge branch 'main' into dev/expose_sum_2x2_to_python 2025-10-27 19:47:09 +01:00
c8c681faa8 updated release notes 2025-10-27 19:30:43 +01:00
0faaf2bbc7 updated release notes
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2025-10-27 18:45:23 +01:00
Erik Fröjdh
ac83eeff9b added tell and better error checking to cluster file (#239)
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- Check feof and ferror when reading frames
- added tell member function to ClusterFile
2025-10-27 15:46:31 +01:00
df7b9be5a5 added docstrings wrap struct into tuple
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2025-10-23 19:16:33 +02:00
dbffea15c0 fix: included deleted file 2025-10-23 17:50:17 +02:00
6e38c3259b added documentation link in README 2025-10-23 17:40:55 +02:00
73e8fd31c9 vector class no longer needed 2025-10-23 17:36:29 +02:00
b28abb2668 updated tests 2025-10-23 17:35:16 +02:00
01fa61cf47 index now returns enum type 2025-10-23 17:34:54 +02:00
790dd63ba3 make max_sum_2x2 properly accessible from python 2025-10-23 15:00:52 +02:00
45f506b473 Fix/adapt and test interpolation (#231)
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Adapted eta interpolation: 

### Issues with previous interpolation: 

## Eta Calculation: 
- previously assumed photon hit to be in bottom left pixel of cluster
(photon hit assumed in bottom right pixel of cluster)
- clusters are filled from top left to bottom right (previously assumed:
bottom left to top right)

## Actual Interpolation: 
- photon hits are given in pixel coordinates (previous interpolation
assumed euclidean coordinates, e.g. positive distance in y coordinate
becomes negative distance in row pixels)
- removed *2 of calculated distance 

## General Adaption: 
- max_sum_2x2 return subcluster index relative to cluster center e.g.
bottomleft, bottomright

## Added proper test case 
- simulated photon hit with normal energy distribution 
- Note: Test case for 2x2 cluster fails - Think uniform photon hit
distribution cant be modeled by normalized eta distribution for 2x2
clusters
2025-10-17 10:44:08 +02:00
6f10afbcdc Merge branch 'main' into fix/adapt_and_test_interpolation 2025-10-17 10:03:26 +02:00
e418986fd2 fix/roi_max (#237)
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roi max should be incremented by 1 for all versions of the file
2025-10-16 16:08:10 +02:00
723c8dd013 add nlohmann_json to support CMake find_package after 3.12 split 2025-10-16 15:30:43 +02:00