143 Commits

Author	SHA1	Message	Date
maliakal_d	031d9503d8	fixed size_t for consistencies, done everything except array of ns and map	2025-06-10 17:20:56 +02:00
maliakal_d	cba2e46e2f	threshold energy	2025-06-10 11:02:13 +02:00
maliakal_d	be7f510775	fix for burst mode when not in file	2025-06-10 10:42:43 +02:00
maliakal_d	56fa6f6bfb	added counter mask, fixed adc mask data type, removed redundant scan parameter parsing	2025-06-10 09:25:20 +02:00
maliakal_d	ca4d392b2f	dbit offset and transceiver mask	2025-06-09 16:03:55 +02:00
maliakal_d	3b65e92cb7	added num interfaces and ten giga enable	2025-06-09 15:14:35 +02:00
maliakal_d	755a8fb2b7	added exptime, period in hdf5, also added print for chrono and StringTo	2025-06-09 14:41:07 +02:00
maliakal_d	dc7f6d44f2	fixed master h5	2025-06-09 00:41:21 +02:00
maliakal_d	480e28c927	wip at fixing hdf5 master file	2025-06-06 16:36:40 +02:00
maliakal_d	d7242671b2	Merge branch 'main' into dev/hdf5	2025-06-05 16:18:05 +02:00
maliakal_d	a6a02249bc	refactoring, removing redundant functiosn to read header fields	2025-06-05 16:17:22 +02:00
Erik Fröjdh	1bc2fd770a	Binding 5x5, 7x7 and 9x9 clusters in python (#188) ... - New binding code with macros to bind all cluster templates - Simplified factory function on the python side - 5x5, 7x7 and 9x9 bindings in python	2025-06-05 08:57:59 +02:00
maliakal_d	a3f831dc9e	efficiently read in one hyperslab read instead of multiple reads in a loop	2025-06-05 00:38:27 +02:00
maliakal_d	76b8872fe6	refactored a bit	2025-06-05 00:11:24 +02:00
maliakal_d	e7d3e667b0	should work for other multiple frame reads	2025-06-04 16:54:18 +02:00
maliakal_d	d9cbf0f481	able to get headers from multiple modules as well	2025-06-04 15:59:27 +02:00
maliakal_d	5681e18403	merge from latest developer	2025-06-03 11:24:37 +02:00
Erik Fröjdh	9e1b8731b0	RawSubFile support multi file access (#173) ... This PR is a fix/improvement to a problem that Jonathan had. (#156) The original implementation opened all subfiles at once witch works for normal sized datasets but fails at a certain point (thousands of files). - This solution uses RawSubFile to manage the different file indicies and only opens the file we need - Added logger.h from slsDetectorPackage for debug printing (in production no messages should be visible)	2025-05-22 11:00:03 +02:00
Erik Fröjdh	a6eebbe9bd	removed extra const on return type, added cast (#177) ... Fixed warnings on apple clang: - removed extra const on return type - added cast to suppress a float to double conversion warning	2025-05-20 15:27:38 +02:00
Erik Fröjdh	cf158e2dcd	Added scurve fitting (#168) ... - added scurve fitting with two different signs (scurve, scurve2) - at the moment no option to set initial parameters --------- Co-authored-by: JulianHeymes <julian.heymes@psi.ch>	2025-05-05 11:40:04 +02:00
Erik Fröjdh	12ae1424fb	consistent use of ssize_t instead of int64_t (#167) ... - Consistent use of ssize_t to avoid issues on 32 bit platforms and also mac with (long long int as ssize_t)	2025-04-25 15:52:02 +02:00
mazzol_a	eb6862ff99	changed name of GainMap to InvertedGainMap	2025-04-25 12:03:59 +02:00
mazzol_a	f06e722dce	changes from PR review	2025-04-25 11:38:56 +02:00
Erik Fröjdh	7b5e32a824	Api extra (#166) ... Changes to be able to run the example notebooks: - Invert gain map on setting (multiplication is faster but user supplies ADU/energy) - Cast after applying gain map not to loose precision (Important for int32 clusters) - "factor" for ClusterFileSink - Cluster size available to be able to create the right file sink	2025-04-25 10:31:16 +02:00
froejdh_e	86d343f5f5	merged with developer	2025-04-23 11:45:04 +02:00
froejdh_e	c6e8e5f6a1	inverted gain map	2025-04-22 16:16:27 +02:00
Erik Fröjdh	326941e2b4	Custom base for decoding ADC data (#163) ... New function apply_custom_weights (can we find a better name) that takes a uint16 and a NDView<double,1> of bases for the conversion. For each supplied weight it is used as base (instead of 2) to convert from bits to a double. --------- Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-04-22 15:20:46 +02:00
mazzol_a	177459c98a	added multithreaded cluster finder test	2025-04-17 17:09:53 +02:00
Mazzoleni Alice Francesca	c49a2fdf8e	removed cluster_2x2 and cluster3x3 specializations	2025-04-16 16:40:42 +02:00
Mazzoleni Alice Francesca	acd9d5d487	moved parts of ClusterFile implementation into declaration	2025-04-15 15:15:34 +02:00
Mazzoleni Alice Francesca	d4050ec557	enum is now enum class	2025-04-15 14:57:25 +02:00
Mazzoleni Alice Francesca	fca9d5d2fa	replaced extract template parameters	2025-04-15 14:40:09 +02:00
Mazzoleni Alice Francesca	1174f7f434	fixed calculate eta	2025-04-15 13:18:25 +02:00
Mazzoleni Alice Francesca	54def26334	added ClusterFile tests fixed some bugs in ClusterFile	2025-04-14 15:48:09 +02:00
Erik Fröjdh	a59e9656be	Making RawSubFile usable from Python (#158) ... - Removed a printout left from debugging - return also header when reading - added read_n - check for error in ifstream	2025-04-11 16:54:21 +02:00
Mazzoleni Alice Francesca	15e52565a9	dont convert to byte	2025-04-11 14:35:20 +02:00
froejdh_e	e71569b15e	resize before read	2025-04-11 13:38:33 +02:00
froejdh_e	113f34cc98	fixes	2025-04-10 16:50:04 +02:00
Mazzoleni Alice Francesca	53a90e197e	added additional tests	2025-04-10 10:41:58 +02:00
Mazzoleni Alice Francesca	76f050f69f	solved merge conflict	2025-04-10 09:21:50 +02:00
Erik Fröjdh	8b0eee1e66	fixed warnings and removed ambiguous read_frame (#154) ... Fixed warnings: - unused variable in Interpolator - Narrowing conversions uint64-->int64 Removed an ambiguous function from JungfrauDataFile - NDarry read_frame(header&=nullptr) - Frame read_frame() NDArray and NDView size() is now signed	2025-04-09 17:54:55 +02:00
Erik Fröjdh	f16273a566	Adding support for Jungfrau .dat files (#152) ... closes #150 **Not addressed in this PR:** - pixels_per_frame, bytes_per_frame and tell should be made cost in FileInterface	2025-04-08 15:31:04 +02:00
Mazzoleni Alice Francesca	a12e43b176	underlying container of ClusterVcetor is now a std::vector	2025-04-07 12:27:44 +02:00
Mazzoleni Alice Francesca	9de84a7f87	added some python tests	2025-04-04 17:19:15 +02:00
Mazzoleni Alice Francesca	885309d97c	fix build	2025-04-03 17:14:28 +02:00
Mazzoleni Alice Francesca	e24ed68416	fixed include	2025-04-03 16:50:02 +02:00
Mazzoleni Alice Francesca	248d25486f	refactored python files	2025-04-03 16:38:12 +02:00
Mazzoleni Alice Francesca	d7ef9bb1d8	missed some refactoring of datatypes	2025-04-03 11:36:15 +02:00
Mazzoleni Alice Francesca	de9fc16e89	generalize is_selected	2025-04-03 09:28:54 +02:00
Mazzoleni Alice Francesca	50eeba4005	restructured GainMap to have own class and generalized	2025-04-02 17:58:26 +02:00