mazzol_a
eb6862ff99
changed name of GainMap to InvertedGainMap
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2025-04-25 12:03:59 +02:00
Erik Fröjdh
7b5e32a824
Api extra ( #166 )
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Changes to be able to run the example notebooks:
- Invert gain map on setting (multiplication is faster but user supplies
ADU/energy)
- Cast after applying gain map not to loose precision (Important for
int32 clusters)
- "factor" for ClusterFileSink
- Cluster size available to be able to create the right file sink
2025-04-25 10:31:16 +02:00
froejdh_e
86d343f5f5
merged with developer
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2025-04-23 11:45:04 +02:00
mazzol_a
d5f8daf194
removed debug option in CMakelist
Build on RHEL9 / buildh (push) Successful in 2m36s
2025-04-22 16:16:31 +02:00
Erik Fröjdh
326941e2b4
Custom base for decoding ADC data ( #163 )
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New function apply_custom_weights (can we find a better name) that takes
a uint16 and a NDView<double,1> of bases for the conversion. For each
supplied weight it is used as base (instead of 2) to convert from bits
to a double.
---------
Co-authored-by: siebsi <sieb.patr@gmail.com>
2025-04-22 15:20:46 +02:00
Erik Fröjdh
84aafa75f6
Building wheels and uploading to pypi ( #160 )
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Still to be resolved in another PR:
- Consistent versioning across compiled code, conda and pypi
2025-04-22 08:36:34 +02:00
Mazzoleni Alice Francesca
c49a2fdf8e
removed cluster_2x2 and cluster3x3 specializations
Build on RHEL9 / buildh (push) Successful in 1m58s
2025-04-16 16:40:42 +02:00
Mazzoleni Alice Francesca
14211047ff
added function warpper around ClusterFinderMT and ClusterCollector to construct object
2025-04-16 14:22:44 +02:00
Erik Fröjdh
5c8a5099fd
Merge branch 'api_cluster_vector' into testing_clusters
2025-04-14 16:40:47 +02:00
froejdh_e
7c93632605
tests and fix
2025-04-14 16:38:25 +02:00
Mazzoleni Alice Francesca
54def26334
added ClusterFile tests fixed some bugs in ClusterFile
Build on RHEL9 / buildh (push) Successful in 1m55s
2025-04-14 15:48:09 +02:00
Erik Fröjdh
a59e9656be
Making RawSubFile usable from Python ( #158 )
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Build on RHEL8 / build (push) Successful in 1m55s
Build on RHEL9 / build (push) Successful in 1m44s
- Removed a printout left from debugging
- return also header when reading
- added read_n
- check for error in ifstream
2025-04-11 16:54:21 +02:00
Mazzoleni Alice Francesca
15e52565a9
dont convert to byte
2025-04-11 14:35:20 +02:00
froejdh_e
92f5421481
np test
2025-04-10 16:58:47 +02:00
froejdh_e
113f34cc98
fixes
2025-04-10 16:50:04 +02:00
Mazzoleni Alice Francesca
53a90e197e
added additional tests
Build on RHEL9 / buildh (push) Successful in 1m52s
2025-04-10 10:41:58 +02:00
Erik Fröjdh
6e4db45b57
Activated RH8 build on PSI gitea ( #155 )
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Build on RHEL9 / build (push) Successful in 1m44s
2025-04-10 10:17:16 +02:00
Mazzoleni Alice Francesca
76f050f69f
solved merge conflict
Build on RHEL9 / buildh (push) Failing after 1m22s
2025-04-10 09:21:50 +02:00
Mazzoleni Alice Francesca
a13affa4d3
changed template arguments added tests
2025-04-10 09:13:58 +02:00
froejdh_e
894065fe9c
added utility plot
Build on RHEL9 / buildh (push) Successful in 1m48s
2025-04-09 12:19:14 +02:00
Erik Fröjdh
f16273a566
Adding support for Jungfrau .dat files ( #152 )
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Build on RHEL9 / buildh (push) Successful in 1m48s
closes #150
**Not addressed in this PR:**
- pixels_per_frame, bytes_per_frame and tell should be made cost in
FileInterface
2025-04-08 15:31:04 +02:00
froejdh_e
10e4e10431
function signature for push back
2025-04-07 15:33:37 +02:00
Mazzoleni Alice Francesca
017960d963
added push_back property
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Failing after 37s
2025-04-07 13:41:14 +02:00
Mazzoleni Alice Francesca
a12e43b176
underlying container of ClusterVcetor is now a std::vector
2025-04-07 12:27:44 +02:00
Mazzoleni Alice Francesca
9de84a7f87
added some python tests
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Failing after 41s
2025-04-04 17:19:15 +02:00
Mazzoleni Alice Francesca
248d25486f
refactored python files
2025-04-03 16:38:12 +02:00
Mazzoleni Alice Francesca
a24bbd9cf9
started to do python refactoring
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Failing after 44s
2025-04-03 11:56:25 +02:00
Mazzoleni Alice Francesca
4240942cec
solved merge conflict
2025-04-01 17:48:48 +02:00
froejdh_e
8cad7a50a6
fixed py
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Failing after 42s
2025-04-01 15:00:03 +02:00
Erik Fröjdh
9d8e803474
Merge branch 'main' into developer
2025-04-01 14:35:27 +02:00
Erik Fröjdh
a42c0d645b
added roi, noise and gain ( #143 )
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- Moved definitions of Cluster_2x2 and Cluster_3x3 to it's own file
- Added optional members for ROI, noise_map and gain_map in ClusterFile
**API:**
After creating the ClusterFile the user can set one or all of: roi,
noise_map, gain_map
```python
f = ClusterFile(fname)
f.set_roi(roi) #aare.ROI
f.set_noise_map(noise_map) #numpy array
f.set_gain_map(gain_map) #numpy array
```
**When reading clusters they are evaluated in the order:**
1. If ROI is enabled check that the cluster is within the ROI
1. If noise_map is enabled check that the cluster meets one of the
conditions
- Center pixel above noise
- Highest 2x2 sum above 2x noise
- 3x3 sum above 3x noise
1. If gain_map is set apply the gain map before returning the clusters
(not used for noise cut)
**Open questions:**
1. Check for out of bounds access in noise and gain map?
closes #139
closes #135
closes #90
2025-04-01 14:31:25 +02:00
Erik Fröjdh
5d8ad27b21
Developer ( #138 )
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Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Successful in 1m45s
- Fully functioning variable size cluster finder
- Added interpolation
- Bit reordering for ADC SAR 05
---------
Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>
Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch>
2025-03-20 12:52:04 +01:00
Erik Fröjdh
b529b6d33b
Merge branch 'main' into developer
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Successful in 1m33s
2025-03-19 19:29:15 +01:00
Erik Fröjdh
11cd2ec654
Interpolate ( #137 )
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- added eta based interpolation
2025-03-18 17:45:38 +01:00
froejdh_e
e59a361b51
removed workspace
Build the package using cmake then documentation / build (ubuntu-latest, 3.12) (push) Failing after 48s
Build the package using cmake then documentation / deploy (push) Has been skipped
2025-03-17 15:23:55 +01:00
froejdh_e
332bdeb02b
modified algo
2025-03-14 11:07:09 +01:00
froejdh_e
5614cb4673
WIP
2025-03-05 17:40:08 +01:00
froejdh_e
8ae6bb76f8
removed warnings added clang-tidy
2025-02-21 11:18:39 +01:00
Xiangyu Xie
1d2c38c1d4
Enable VarClusterFinder ( #134 )
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Co-authored-by: xiangyu.xie <xiangyu.xie@psi.ch>
2025-02-19 16:11:24 +01:00
Erik Fröjdh
b7a47576a1
Multi threaded fitting and returning chi2 ( #132 )
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Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
Co-authored-by: Dhanya Thattil <dhanya.thattil@psi.ch>
2025-02-19 07:19:59 +01:00
Erik Fröjdh
fc1c9f35d6
Merge branch 'main' into developer
2025-02-18 21:52:20 +01:00
Erik Fröjdh
6a83988485
Added chi2 to fit results ( #131 )
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- fit_gaus and fit_pol1 now return a dict
- calculate chi2 after fit
- cleaned up code
2025-02-18 21:13:27 +01:00
Erik Fröjdh
dadf5f4869
Added fitting, fixed roi etc ( #129 )
...
Co-authored-by: Patrick <patrick.sieberer@psi.ch>
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
2025-02-12 16:50:31 +01:00
Erik Fröjdh
7309cff47c
Added fitting with lmfit ( #128 )
...
- added stand alone fitting using:
https://jugit.fz-juelich.de/mlz/lmfit.git
- fit_gaus, fit_pol1 with and without errors
- multi threaded fitting
---------
Co-authored-by: JulianHeymes <julian.heymes@psi.ch>
2025-02-12 16:35:48 +01:00
Erik Fröjdh
c0c5e07ad8
added decoding of adc_sar_04 ( #127 )
2025-02-12 16:17:32 +01:00
Erik Fröjdh
d86cb533c8
Fix minor warnings ( #126 )
...
- Unused variables
- signed vs. unsigned
- added -flto=auto
2025-02-11 11:48:01 +01:00
Erik Fröjdh
4c750cc3be
Fixing ROI read of RawFile ( #125 )
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- Bugfixes
- New abstraction for detector geometry
- Tests for updating geo with ROI
2025-02-11 11:08:22 +01:00
Erik Fröjdh
5a3ca2ae2d
Decoding for ADC SAR 05 64->16bit ( #124 )
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Co-authored-by: Patrick <patrick.sieberer@psi.ch>
2025-02-05 14:40:26 +01:00
froejdh_e
6cde968c60
summing 2x2
2025-01-15 16:12:06 +01:00
froejdh_e
f6d736facd
docs for ClusterFile
2025-01-15 09:15:41 +01:00
