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added roi, noise and gain (#143)
- Moved definitions of Cluster_2x2 and Cluster_3x3 to it's own file - Added optional members for ROI, noise_map and gain_map in ClusterFile **API:** After creating the ClusterFile the user can set one or all of: roi, noise_map, gain_map ```python f = ClusterFile(fname) f.set_roi(roi) #aare.ROI f.set_noise_map(noise_map) #numpy array f.set_gain_map(gain_map) #numpy array ``` **When reading clusters they are evaluated in the order:** 1. If ROI is enabled check that the cluster is within the ROI 1. If noise_map is enabled check that the cluster meets one of the conditions - Center pixel above noise - Highest 2x2 sum above 2x noise - 3x3 sum above 3x noise 1. If gain_map is set apply the gain map before returning the clusters (not used for noise cut) **Open questions:** 1. Check for out of bounds access in noise and gain map? closes #139 closes #135 closes #90
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@ -7,6 +7,6 @@ inline auto test_data_path(){
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if(const char* env_p = std::getenv("AARE_TEST_DATA")){
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return std::filesystem::path(env_p);
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}else{
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throw std::runtime_error("AARE_TEST_DATA_PATH not set");
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throw std::runtime_error("Path to test data: $AARE_TEST_DATA not set");
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}
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}
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