add documentation for file_io files

file_io/src/File.cpp

@@ -7,6 +7,9 @@
 namespace aare {
 
 File::File(std::filesystem::path fname, std::string mode, FileConfig cfg) {
+    if (mode != "r" && mode != "w" && mode != "a") {
+        throw std::invalid_argument("Unsupported file mode");
+    }
 
     if ((mode == "r" or mode == "a") and not std::filesystem::exists(fname)) {
         throw std::runtime_error(fmt::format("File does not exist: {}", fname.c_str()));

file_io/src/RawFile.cpp

@@ -15,7 +15,6 @@ RawFile::RawFile(const std::filesystem::path &fname, const std::string &mode, co
             aare::logger::warn(
                 "In read mode it is not necessary to provide a config, the provided config will be ignored");
         }
-        aare::logger::debug("XXXXXXXXLoading raw file");
         parse_fname();
         parse_metadata();
         find_number_of_subfiles();
@@ -49,6 +48,27 @@ sls_detector_header RawFile::read_header(const std::filesystem::path &fname) {
         throw std::runtime_error("Could not read header from file");
     return h;
 }
+bool RawFile::is_master_file(std::filesystem::path fpath) {
+    std::string stem = fpath.stem();
+    if (stem.find("_master_") != std::string::npos)
+        return true;
+    else
+        return false;
+}
+
+void RawFile::find_number_of_subfiles() {
+    int n_mod = 0;
+    while (std::filesystem::exists(data_fname(++n_mod, 0)))
+        ;
+    n_subfiles = n_mod;
+}
+inline std::filesystem::path RawFile::data_fname(int mod_id, int file_id) {
+    return this->m_base_path / fmt::format("{}_d{}_f{}_{}.raw", this->m_base_name, file_id, mod_id, this->m_findex);
+}
+
+inline std::filesystem::path RawFile::master_fname() {
+    return this->m_base_path / fmt::format("{}_master_{}{}", this->m_base_name, this->m_findex, this->m_ext);
+}
 
 void RawFile::find_geometry() {
     uint16_t r{};
@@ -163,7 +183,6 @@ void RawFile::parse_fname() {
     m_base_path = m_fname.parent_path();
     m_base_name = m_fname.stem();
     m_ext = m_fname.extension();
-    aare::logger::debug("EXTEXT", m_ext);
     auto pos = m_base_name.rfind("_");
     m_findex = std::stoi(m_base_name.substr(pos + 1));
     pos = m_base_name.find("_master_");

file_io/src/RawFileHelpers.cpp

@@ -1,32 +0,0 @@
-#include "aare/file_io/RawFileFactory.hpp"
-#include "aare/core/defs.hpp"
-#include "aare/file_io/RawFile.hpp"
-#include "aare/file_io/SubFile.hpp"
-#include "aare/file_io/helpers.hpp"
-#include "aare/utils/logger.hpp"
-
-#include <fstream>
-#include <iostream>
-#include <nlohmann/json.hpp>
-
-using json = nlohmann::json;
-
-namespace aare::RawFileHelpers {
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-} // namespace aare

file_io/src/SubFile.cpp

@@ -16,7 +16,7 @@ SubFile::SubFile(std::filesystem::path fname, DetectorType detector, ssize_t row
     if (read_impl_map.find({detector, bitdepth}) == read_impl_map.end()) {
         auto error_msg = LOCATION + "No read_impl function found for detector: " + toString(detector) +
                          " and bitdepth: " + std::to_string(bitdepth);
-        throw std::runtime_error(error_msg);
+        throw std::invalid_argument(error_msg);
     }
     this->read_impl = read_impl_map.at({detector, bitdepth});
 }

file_io/src/helpers.cpp

@@ -1,13 +0,0 @@
-#include "aare/file_io/helpers.hpp"
-
-namespace aare {
-
-bool is_master_file(std::filesystem::path fpath) {
-    std::string stem = fpath.stem();
-    if (stem.find("_master_") != std::string::npos)
-        return true;
-    else
-        return false;
-}
-
-} // namespace aare