Merge pull request #47 from slsdetectorgroup/frame-test

Added tests to Frame and some cleanup

CMakeLists.txt

@@ -120,6 +120,7 @@ if(AARE_USE_WARNINGS)
 endif()
 
 if(AARE_TESTS)
+    enable_testing()
     add_subdirectory(tests)
 endif()
 

core/CMakeLists.txt

@@ -21,6 +21,7 @@ if(AARE_TESTS)
     set(TestSources
             ${CMAKE_CURRENT_SOURCE_DIR}/test/defs.test.cpp
             ${CMAKE_CURRENT_SOURCE_DIR}/test/DType.test.cpp
+            ${CMAKE_CURRENT_SOURCE_DIR}/test/Frame.test.cpp
             ${CMAKE_CURRENT_SOURCE_DIR}/test/ProducerConsumerQueue.test.cpp
             ${CMAKE_CURRENT_SOURCE_DIR}/test/NDArray.test.cpp
             ${CMAKE_CURRENT_SOURCE_DIR}/test/NDView.test.cpp

core/include/aare/Frame.hpp

@@ -26,13 +26,24 @@ class Frame {
     Frame(ssize_t rows, ssize_t cols, ssize_t m_bitdepth);
     Frame(std::byte *fp, ssize_t rows, ssize_t cols, ssize_t m_bitdepth);
     std::byte *get(int row, int col);
-    template <typename T> void set(int row, int col, T data);
-    // std::vector<std::vector<DataType>> get_array();
+
+    
+    //TODO! can we, or even want to remove the template?
+    template <typename T>
+    void set(int row, int col, T data) {
+        assert(sizeof(T) == m_bitdepth/8);
+        if (row < 0 || row >= m_rows || col < 0 || col >= m_cols) {
+            throw std::out_of_range("Invalid row or column index");
+        }
+        std::memcpy(m_data+(row*m_cols + col)*(m_bitdepth/8), &data, m_bitdepth/8);
+    }
+
     ssize_t rows() const { return m_rows; }
     ssize_t cols() const { return m_cols; }
     ssize_t bitdepth() const { return m_bitdepth; }
-    inline ssize_t size() const { return m_rows * m_cols * m_bitdepth / 8; }
-    std::byte *_get_data() { return m_data; }
+    ssize_t size() const { return m_rows * m_cols * m_bitdepth / 8; }
+    std::byte *data() const { return m_data; }
+    
     Frame &operator=(Frame &other) {
         m_rows = other.rows();
         m_cols = other.cols();

core/src/Frame.cpp

@@ -14,6 +14,7 @@ Frame::Frame(std::byte* bytes, ssize_t rows, ssize_t cols, ssize_t bitdepth):
 Frame::Frame(ssize_t rows, ssize_t cols, ssize_t bitdepth):
   m_rows(rows), m_cols(cols), m_bitdepth(bitdepth) {
     m_data = new std::byte[rows*cols*bitdepth/8];
+    std::memset(m_data, 0, rows*cols*bitdepth/8);
   }
 
 
@@ -26,29 +27,5 @@ std::byte* Frame::get(int row, int col) {
   return m_data+(row*m_cols + col)*(m_bitdepth/8);
 }
 
-template <typename T>
-void Frame::set(int row, int col, T data) {
-  assert(sizeof(T) == m_bitdepth/8);
-  if (row < 0 || row >= m_rows || col < 0 || col >= m_cols) {
-    std::cerr << "Invalid row or column index" << std::endl;
-    return;
-  }
-  std::memcpy(m_data+(row*m_cols + col)*(m_bitdepth/8), &data, m_bitdepth/8);
-}
-
-template void Frame::set(int row, int col, uint16_t data);
-template void Frame::set(int row, int col, uint32_t data);
-
-
-// std::vector<std::vector<DataType>> Frame<DataType>::get_array() {
-//   std::vector<std::vector<DataType>> array;
-//   for (int i = 0; i < m_rows; i++) {
-//     std::vector<DataType> row;
-//     row.assign(m_data + i*m_cols, m_data + (i+1)*m_cols);
-//     array.push_back(row);
-//   }
-
-//   return array;
-// }
 
 } // namespace aare

core/test/Frame.test.cpp

@@ -0,0 +1,105 @@
+#include "aare/Frame.hpp"
+#include <catch2/catch_test_macros.hpp>
+
+using aare::Frame;
+
+TEST_CASE("Construct a frame"){
+    ssize_t rows = 10;
+    ssize_t cols = 10;
+    ssize_t bitdepth = 8;
+
+    Frame frame(rows, cols, bitdepth);
+
+    REQUIRE(frame.rows() == rows);
+    REQUIRE(frame.cols() == cols);
+    REQUIRE(frame.bitdepth() == bitdepth);
+    REQUIRE(frame.size() == rows*cols*bitdepth/8);
+
+
+    // data should be initialized to 0
+    for (int i = 0; i < rows; i++){
+        for (int j = 0; j < cols; j++){
+            uint8_t *data = (uint8_t*)frame.get(i, j);
+            REQUIRE(data != nullptr);
+            REQUIRE(*data == 0);
+        }
+    }
+}
+
+TEST_CASE("Set a value in a 8 bit frame"){
+    ssize_t rows = 10;
+    ssize_t cols = 10;
+    ssize_t bitdepth = 8;
+
+    Frame frame(rows, cols, bitdepth);
+
+    // set a value
+    uint8_t value = 255;
+    frame.set(5, 7, value);
+
+
+    // only the value we did set should be non-zero
+    for (int i = 0; i < rows; i++){
+        for (int j = 0; j < cols; j++){
+            uint8_t *data = (uint8_t*)frame.get(i, j);
+            REQUIRE(data != nullptr);
+            if (i == 5 && j == 7){
+                REQUIRE(*data == value);
+            } else {
+                REQUIRE(*data == 0);
+            }
+        }
+    }
+}
+
+TEST_CASE("Set a value in a 64 bit frame"){
+    ssize_t rows = 10;
+    ssize_t cols = 10;
+    ssize_t bitdepth = 64;
+
+    Frame frame(rows, cols, bitdepth);
+
+    // set a value
+    uint64_t value = 255;
+    frame.set(5, 7, value);
+
+
+    // only the value we did set should be non-zero
+    for (int i = 0; i < rows; i++){
+        for (int j = 0; j < cols; j++){
+            uint64_t *data = (uint64_t*)frame.get(i, j);
+            REQUIRE(data != nullptr);
+            if (i == 5 && j == 7){
+                REQUIRE(*data == value);
+            } else {
+                REQUIRE(*data == 0);
+            }
+        }
+    }
+}
+
+
+TEST_CASE("Move construct a frame"){
+    ssize_t rows = 10;
+    ssize_t cols = 10;
+    ssize_t bitdepth = 8;
+
+    Frame frame(rows, cols, bitdepth);
+    std::byte* data = frame.data();
+
+    Frame frame2(std::move(frame));
+
+    //state of the moved from object
+    REQUIRE(frame.rows() == 0);
+    REQUIRE(frame.cols() == 0);
+    REQUIRE(frame.bitdepth() == 0);
+    REQUIRE(frame.size() == 0);
+    REQUIRE(frame.data() == nullptr);
+
+    //state of the moved to object
+    REQUIRE(frame2.rows() == rows);
+    REQUIRE(frame2.cols() == cols);
+    REQUIRE(frame2.bitdepth() == bitdepth);
+    REQUIRE(frame2.size() == rows*cols*bitdepth/8);
+    REQUIRE(frame2.data() == data);
+}

file_io/src/NumpyFile.cpp

@@ -38,14 +38,14 @@ void NumpyFile::write(Frame &frame) {
         throw std::runtime_error("File not open for writing");
     }
     fseek(fp, 0, SEEK_END);
-    fwrite(frame._get_data(), frame.size(), 1, fp);
+    fwrite(frame.data(), frame.size(), 1, fp);
 }
 
 
 
 Frame NumpyFile::get_frame(size_t frame_number) {
     Frame frame(m_header.shape[1], m_header.shape[2], m_header.dtype.bitdepth());
-    get_frame_into(frame_number, frame._get_data());
+    get_frame_into(frame_number, frame.data());
     return frame;
 }
 void NumpyFile::get_frame_into(size_t frame_number, std::byte *image_buf) {

file_io/src/RawFile.cpp

@@ -5,7 +5,7 @@ namespace aare{
 
 Frame RawFile::get_frame(size_t frame_number) {
     auto f = Frame(this->m_rows, this->m_cols, this->m_bitdepth);
-    std::byte *frame_buffer = f._get_data();
+    std::byte *frame_buffer = f.data();
     get_frame_into(frame_number, frame_buffer);
     return f;
 }

tests/CMakeLists.txt

@@ -24,6 +24,7 @@ set_target_properties(tests PROPERTIES
 
 include(CTest)
 include(Catch)
+catch_discover_tests(tests)
 
 set(TestSources
         ${CMAKE_CURRENT_SOURCE_DIR}/test.cpp
@@ -34,11 +35,10 @@ target_sources(tests PRIVATE ${TestSources} )
 # target_include_directories(tests PRIVATE ${CMAKE_SOURCE_DIR}/include/common)
 target_link_libraries(tests PRIVATE core aare_compiler_flags utils)
 
-catch_discover_tests(tests
-    # WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/data
-)
+
 
 #configure a header to pass test file paths
 get_filename_component(TEST_FILE_PATH ${PROJECT_SOURCE_DIR}/data ABSOLUTE)
 configure_file(test_config.hpp.in test_config.hpp)
-target_include_directories(tests PRIVATE ${CMAKE_CURRENT_BINARY_DIR})
+target_include_directories(tests PRIVATE ${CMAKE_CURRENT_BINARY_DIR})
+