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fixed adc mask and roi, also the test for hdf5 for jungfrua

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This commit is contained in:
maliakal_d
2025-06-13 10:20:33 +02:00
parent 286b2888ca
commit 053536d135
3 changed files with 40 additions and 73 deletions
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2
include/aare/Hdf5MasterFile.hpp
View File

@ -43,7 +43,7 @@ class Hdf5MasterFile {
std::optional<bool> m_quad{};
std::optional<int> m_number_of_rows{};
std::optional<std::vector<size_t>> m_rate_corrections{};
uint32_t m_adc_mask{};
std::optional<uint32_t> m_adc_mask{};
bool m_analog_flag{};
std::optional<int> m_analog_samples{};
bool m_digital_flag{};

17
src/Hdf5MasterFile.cpp
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@ -308,8 +308,6 @@ void Hdf5MasterFile::parse_acquisition_metadata(
LOG(logDEBUG) << "Threshold Energies: "
<< ToString(m_threshold_energy_all);
} catch (H5::FileIException &e) {
std::cout << "No Threshold Energies found in file: " << fpath
<< std::endl;
// keep the optional empty
}
@ -366,10 +364,10 @@ void Hdf5MasterFile::parse_acquisition_metadata(
try {
m_adc_mask = h5_get_scalar_dataset<uint32_t>(
file, std::string(metadata_group_name + "ADC Mask"));
LOG(logDEBUG) << "ADC Mask: " << m_adc_mask;
} catch (H5::FileIException &e) {
// keep the optional empty
}
LOG(logDEBUG) << "ADC Mask: " << m_adc_mask;
// Analog Flag
// ----------------------------------------------------------------
@ -468,19 +466,16 @@ void Hdf5MasterFile::parse_acquisition_metadata(
file, std::string(metadata_group_name + "receiver roi ymax"));
// if any of the values are set update the roi
if (tmp_roi.xmin != 4294967295 || tmp_roi.xmax != 4294967295 ||
tmp_roi.ymin != 4294967295 || tmp_roi.ymax != 4294967295) {
if (tmp_roi.xmin != -1 || tmp_roi.xmax != -1 ||
tmp_roi.ymin != -1 || tmp_roi.ymax != -1) {
// why?? TODO
if (dVersion < 6.61) {
//if (dVersion < 6.6) {
tmp_roi.xmax++;
tmp_roi.ymax++;
}
//}
m_roi = tmp_roi;
}
// Not Done TODO
// if we have an roi we need to update the geometry for the subfiles
if (m_roi) {
}
LOG(logDEBUG) << "ROI: " << m_roi;
} catch (H5::FileIException &e) {
// keep the optional empty

94
src/Hdf5MasterFile.test.cpp
View File

@ -12,78 +12,50 @@ TEST_CASE("Parse a master file in .h5 format", "[.integration]") {
REQUIRE(std::filesystem::exists(fpath));
Hdf5MasterFile f(fpath);
// "Version": 7.2,
REQUIRE(f.version() == "6.6");
// "Timestamp": "Tue Feb 20 08:28:24 2024",
// "Detector Type": "Jungfrau",
REQUIRE(f.detector_type() == DetectorType::Jungfrau);
// "Timing Mode": "auto",
REQUIRE(f.timing_mode() == TimingMode::Auto);
// "Geometry": {
// "x": 1,
// "y": 1
// },
REQUIRE(f.geometry().col == 1);
REQUIRE(f.geometry().row == 2);
// "Image Size in bytes": 1048576,
REQUIRE(f.image_size_in_bytes() == 1048576);
// "Pixels": {
// "x": 1024,
REQUIRE(f.pixels_x() == 1024);
// "y": 512
REQUIRE(f.pixels_y() == 512);
// },
// "Max Frames Per File": 3,
REQUIRE(f.max_frames_per_file() == 10000);
REQUIRE(f.frame_discard_policy() == FrameDiscardPolicy::NoDiscard);
REQUIRE(f.frame_padding() == 1);
REQUIRE(f.scan_parameters()->enabled() == false);
REQUIRE(f.total_frames_expected() == 5);
REQUIRE(f.exptime() == std::chrono::microseconds(10));
REQUIRE(f.period() == std::chrono::milliseconds(2));
REQUIRE_FALSE(f.burst_mode().has_value());
REQUIRE(f.number_of_udp_interfaces() == 1);
// Jungfrau doesn't write but it is 16
REQUIRE(f.bitdepth() == 16);
// "Frame Discard Policy": "nodiscard",
REQUIRE(f.frame_discard_policy() == FrameDiscardPolicy::NoDiscard);
// "Frame Padding": 1,
REQUIRE(f.frame_padding() == 1);
// "Scan Parameters": "[disabled]",
REQUIRE(!f.scan_parameters());
// "Total Frames": 10,
REQUIRE(f.total_frames_expected() == 5);
// "Receiver Roi": {
// "xmin": 4294967295,
// "xmax": 4294967295,
// "ymin": 4294967295,
// "ymax": 4294967295
// },
// "Exptime": "10us",
REQUIRE(ToString(f.exptime()) == "10us");
// "Period": "1ms",
// "Number of UDP Interfaces": 1,
// "Number of rows": 512,
REQUIRE_FALSE(f.ten_giga().has_value());
REQUIRE_FALSE(f.threshold_energy().has_value());
REQUIRE_FALSE(f.threshold_energy_all().has_value());
REQUIRE_FALSE(f.subexptime().has_value());
REQUIRE_FALSE(f.subperiod().has_value());
REQUIRE_FALSE(f.quad().has_value());
REQUIRE(f.number_of_rows() == 512);
// "Frames in File": 10,
REQUIRE(f.frames_in_file() == 5);
// TODO! Should we parse this?
// "Frame Header Format": {
// "Frame Number": "8 bytes",
// "SubFrame Number/ExpLength": "4 bytes",
// "Packet Number": "4 bytes",
// "Bunch ID": "8 bytes",
// "Timestamp": "8 bytes",
// "Module Id": "2 bytes",
// "Row": "2 bytes",
// "Column": "2 bytes",
// "Reserved": "2 bytes",
// "Debug": "4 bytes",
// "Round Robin Number": "2 bytes",
// "Detector Type": "1 byte",
// "Header Version": "1 byte",
// "Packets Caught Mask": "64 bytes"
// }
// }
REQUIRE_FALSE(f.analog_samples());
REQUIRE_FALSE(f.digital_samples());
REQUIRE_FALSE(f.rate_corrections().has_value());
REQUIRE_FALSE(f.adc_mask().has_value());
REQUIRE_FALSE(f.analog_flag());
REQUIRE_FALSE(f.analog_samples().has_value());
REQUIRE_FALSE(f.digital_flag());
REQUIRE_FALSE(f.digital_samples().has_value());
REQUIRE_FALSE(f.dbit_offset().has_value());
REQUIRE_FALSE(f.dbit_list().has_value());
REQUIRE_FALSE(f.transceiver_mask().has_value());
REQUIRE_FALSE(f.transceiver_flag());
REQUIRE_FALSE(f.transceiver_samples().has_value());
REQUIRE_FALSE(f.roi().has_value());
REQUIRE_FALSE(f.counter_mask().has_value());
REQUIRE_FALSE(f.exptime_array().has_value());
REQUIRE_FALSE(f.gate_delay_array().has_value());
REQUIRE_FALSE(f.gates().has_value());
REQUIRE_FALSE(f.additional_json_header().has_value());
REQUIRE(f.frames_in_file() == 5);
REQUIRE(f.n_modules() == 2);
}