hinger_v
ed18504809
modified: BP_scan.sh modified: BP_scan_JF11.sh modified: CS_analysis.cpp modified: CS_analysis_JF11 modified: CS_scan.sh modified: CS_scan_JF11.sh modified: CuFluo_exposure.sh modified: filename_creator.sh modified: makefile modified: pccalib.sh modified: run_JFCalibration.txt modified: slsDetector_bin modified: CS_analysis.cpp BP_analysis_M431.cpp BP_analysis_thin.cpp BP_fit.cpp BP_fit_M431.cpp BP_fit_thin.cpp BP_scan_both_speeds.sh BP_scan_thinSensor.sh CS_analysis_M431.cpp CS_analysis_M439.cpp CS_fit.cpp CS_fit_M431.cpp CS_scan_both_speeds.sh CuFluo_exposure_both_speeds.sh CuFluo_fit.cpp Default_pixels_arrays.cpp
139 lines
4.8 KiB
Bash
139 lines
4.8 KiB
Bash
#!/bin/bash
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if [[ "$0" == *"filename_creator.sh"* ]]; then
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echo "script changes env. variables: should be invoked with source, not sh "
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exit
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fi
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echo "Run pccalib.sh [pc_name] to set the DST ip address before running the filename creator"
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echo $0
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echo "printing filenames for module " $1
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#define folder structure
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parentdir="/mnt/sls_det_storage/jungfrau_calib/"
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calib_relativedir="data/Module_"$1"_Calib/"
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ana_relativedir="ana/M"$1"_CalibAna/"
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calibdatafolder=$parentdir$calib_relativedir
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anadatafolder=$parentdir$ana_relativedir
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#datafolder="/mnt/sls_det_storage/jungfrau_calib/data/Module_"$1"_Calib/"
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datestring=$(date +%F)
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echo "Relative calib directory is "$calib_relativedir
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echo "Relative analysis results directory is "$ana_relativedir
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echo "mkdir "$calibdatafolder "if not already existing."
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mkdir -p $calibdatafolder
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#Rcv="./slsDetector_bin_8_0_2_RHEL7/ju_udp_receiver_3threads_2_0 S " #mpc2012 RHEL7
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Rcv="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S " #pc-jungfrau-02 RHEL8
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export TKBPG0=$Rcv$calibdatafolder"BP_M"$1"_"$datestring"_ "$DSTIP
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#export TKBPG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"BP_M"$1"_"$datestring"_ 10.1.1.106"
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export TKBPHG0=$Rcv$calibdatafolder"BP_M"$1"_"$datestring"_HGOG1G2_ "$DSTIP
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#export TKBPHG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"BP_M"$1"_"$datestring"_HGOG1G2_ 10.1.1.106"
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export TKCSHG0=$Rcv$calibdatafolder"CS_M"$1"_"$datestring"_HGOG1G2_ "$DSTIP
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#export TKCSHG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CS_M"$1"_"$datestring"_HGOG1G2_ 10.1.1.106"
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export TKCSG0=$Rcv$calibdatafolder"CS_M"$1"_"$datestring"_ $DSTIP"
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#export TKCSG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CS_M"$1"_"$datestring"_ 10.1.1.106"
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echo "exporting the fluorescence receiver commands "
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export TKFG0=$Rcv$calibdatafolder"CuFluoG0_M"$1"_"$datestring"_ "$DSTIP
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#export TKFG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CuFluoG0_M"$1"_"$datestring"_ 10.1.1.106"
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export TKFHG0=$Rcv$calibdatafolder"CuFluoHG0_M"$1"_"$datestring"_ "$DSTIP
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#export TKFHG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"CuFluoHG0_M"$1"_"$datestring"_ 10.1.1.106"
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export TKPG0=$Rcv$calibdatafolder"pedeG0_M"$1"_"$datestring"_ "$DSTIP
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#export TKPG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"pedeG0_M"$1"_"$datestring"_ 10.1.1.106"
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export TKPHG0=$Rcv$calibdatafolder"pedeHG0_M"$1"_"$datestring"_ "$DSTIP
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#export TKPHG0="./slsDetector_bin/ju_udp_receiver_3threads_2_0 S "$calibdatafolder"pedeHG0_M"$1"_"$datestring"_ 10.1.1.106"
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echo "printing the analysis commands "
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for file in $(find $calibdatafolder -type f -exec basename {} \; | grep 000000 ); do
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prefix=${file%_000000.dat}
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echo $prefix ;
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if [[ $prefix == *"BP"* ]]; then
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bpfile=$prefix
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fi
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if [[ $prefix == *"CS"* ]]; then
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csfile=$prefix
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fi
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if [[ $prefix == *"oG0"* ]]; then
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cgofile=$prefix
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fi
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if [[ $prefix == *"eG0"* ]]; then
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pgofile=$prefix
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fi
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if [[ $prefix == *"oHG0"* ]]; then
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chgofile=$prefix
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fi
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if [[ $prefix == *"eHG0"* ]]; then
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phgofile=$prefix
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fi
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# echo "ss"
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done
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echo "----------------------------------------------------------------------"
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echo "---------------------START OF ANALYSIS CLI commands --------------------"
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echo "----------------------------------------------------------------------"
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echo "M"$1
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echo "./BP_analysis "$1" "$calibdatafolder$bpfile" "$anadatafolder
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echo "./CS_analysis "$1" "$calibdatafolder" "$csfile" "$anadatafolder
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echo "./CuFluo_analysis "$1" G0 "$calibdatafolder $pgofile $cgofile $anadatafolder
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echo "./CuFluo_analysis "$1" HG0 "$calibdatafolder $phgofile $chgofile $anadatafolder
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echo "./JFMC_CalibWriter_wBP" "$1"
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echo " "
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echo "----------------------------------------------------------------------"
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echo "---------------------END OF ANALYSIS CLI commands --------------------"
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echo "----------------------------------------------------------------------"
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echo "creating the output folders? Y for yes "
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if [ ! -v $2 ]; then
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input=$2
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echo $input
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else
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read -n 1 -s input
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echo $input
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fi
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if [[ $input = "Y" ]]; then
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echo "creating the output folders."
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plotbasefolder="/afs/psi.ch/project/mythen/sophie/JFCalibration/plots/M"$1
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mkdir -v $plotbasefolder
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mkdir -v $plotbasefolder"/BackplanePulsing"
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# mkdir -v $plotbasefolder"/Calib_"$datestring #done by/JFMC_CalibWrite
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mkdir -v $plotbasefolder"/CuFluo"
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mkdir -v $plotbasefolder"/CuFluo/G0"
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mkdir -v $plotbasefolder"/CuFluo/HG0"
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mkdir -v $plotbasefolder"/CurrentSource"
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outdatabasefolder="/afs/psi.ch/project/mythen/sophie/JFCalibration/data/M"$1
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mkdir -v $outdatabasefolder
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echo "Output folders created"
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else
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echo "Exiting script"
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fi
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