update README

README.md

@@ -14,6 +14,7 @@ For calibration of storage cells:
 - *CuFluo_exposure_sc.sh* to perform the exposure in the X-ray box
 - *CuFluo_analysis_sc_singlethread_data.cpp* to read pixel spectra from a single storage cell into .root
 - *CuFluo_analysis_sc_singlethread_fits.cpp* to measure the peak-to-peak distance for a single storage cell
+
 Not written multithreaded, but can be launched for multiple storage cells on multiple cores in parallel.
 
 ## Backplane pulsing
@@ -44,30 +45,30 @@ The full dynamic range can be calibrated by combining information from the vario
 - Low gain = high gain [ADU / keV] * medium gain / high gain * low gain / medium gain
 
 Scripts are:
-- *JFMC_CalibWriter.cpp* to perform the calibration
+- *JFMC_CalibWriter_wBP.cpp* to perform the calibration
 
 For calibration of storage cells:
-- *JFMC_CalibWriter_sc.cpp* to perform the calibration
+- *JFMC_CalibWriter_wBP_sc.cpp* to perform the calibration
 
 ## Basic steps to perform the calibration
 Data taking:
-- Setup environment variables: *source setup_env.sh*
+- Set up environment variables: *source setup_env.sh*
 - Set receiver PC: *source pccalib.sh <pc_name>* (either mpc2012 or pc-jungfrau-test)
 - Create receiver commands: *source filename_creator.sh <module number>*
 - *sls_detector_put hostname jfcalib_x* (x=0..5)
 - If required: Setup pulse generator serial connection on pc8830 (BP_scan)
-- If required: Setup x-ray box (CuFluo_exposure)
+- If required: Setup X-ray box (CuFluo_exposure)
 - Launch data taking script (*BP_scan.sh*, *CS_scan.sh*, *CuFluo_exposure.sh*)
 - Monitor if there is any significant package loss. (For BP_scan and CS_scan, there must not be any loss! CuFluo exposure tolerates some loss.)
 - Data are saved to /mnt/sls_det_storage/jungfrau_calib/data/Module_XXX_Calib/
 
 Data analysis:
-- Edit *CS_analysis.cpp* to add the module number(s) you want to calibrate (if they are not already included): *scan_v6.push_back("<module number>");*
-- Recompile *make CS_analysis* (easiest to do it on mpc2012 to avoid running into issues with the version of ROOT)
+- Edit *CS_analysis.cpp* to add the module number(s) you want to calibrate (if they are not already included): *scan_v6.push_back(<"module number">);*
+- Recompile: *make CS_analysis* (easiest to do it on mpc2012 to avoid running into issues with the version of ROOT)
 - Rerun *source filename_creator.sh <module number>* to get the commands to launch scripts for the module
 - If required: Modify commands for storage cells
 - Launch the analysis scripts (*JFMC_CalibWriter_wBP* only when all the other analyses have finished)
-- Output is saved to data/ and plots/
+- Output is saved to data/ and plots/ (local)