undeploy tubulin

Signed-off-by: Basil Bruhn <basil.bruhn@psi.ch>
2026-09-16 12:48:12 +02:00
1 parent 6356ae4abc
commit f421394fcb
@@ -431,168 +431,168 @@ services:
    networks:
      - leaps_db

-  # João Pedro Agostinho de Sousa <joao.agostinho-de-sousa@psi.ch>
-  # tubulin.xyz
-  neo4j:
-    image: neo4j:5
-    environment:
-      NEO4J_AUTH: neo4j/${NEO4J_PASSWORD}
-      NEO4J_server_memory_heap_initial__size: 1G
-      NEO4J_server_memory_heap_max__size: 2G
-      NEO4J_server_memory_pagecache_size: 1G
-    volumes:
-      - /mount/webhosting_dmz_write/tubulin/neo4j/data:/data
-      - /mount/webhosting_dmz_write/tubulin/neo4j/logs:/logs
-    healthcheck:
-      test:
-        [
-          "CMD",
-          "cypher-shell",
-          "-u",
-          "neo4j",
-          "-p",
-          "${NEO4J_PASSWORD}",
-          "RETURN 1",
-        ]
-      interval: 10s
-      timeout: 5s
-      retries: 10
-      start_period: 30s
-    restart: always
-    networks:
-      - tubulinxyz_backend
-    stop_grace_period: 60s
-    logging:
-      driver: json-file
-      options:
-        max-size: "50m"
-        max-file: "5"
-    deploy:
-      resources:
-        limits:
-          memory: 4G
-
-  bootstrap:
-    image: ghcr.io/rtviii/tubulinxyz:latest
-    pull_policy: always
-    environment:
-      NEO4J_URI: bolt://neo4j:7687
-      NEO4J_USER: neo4j
-      NEO4J_PASSWORD: ${NEO4J_PASSWORD}
-      NEO4J_CURRENTDB: neo4j
-      TUBXZ_ROOT: /app
-      TUBETL_DATA: /mnt/tubetl_data
-      NCBI_TAXA_SQLITE: /app/.etetoolkit/taxa.sqlite
-    volumes:
-      - /mount/webhosting_dmz_write/tubulin/data:/mnt/tubetl_data
-      - /mount/webhosting_dmz_write/tubulin/log:/var/log/tubxz
-    depends_on:
-      neo4j:
-        condition: service_healthy
-    entrypoint: ["/bin/sh", "/app/scripts/init_and_seed.sh"]
-    restart: always
-    networks:
-      - tubulinxyz_backend
-    logging:
-      driver: json-file
-      options:
-        max-size: "50m"
-        max-file: "3"
-    deploy:
-      resources:
-        limits:
-          memory: 4G
-
-  backend:
-    image: ghcr.io/rtviii/tubulinxyz:latest
-    pull_policy: always
-    environment:
-      NEO4J_URI: bolt://neo4j:7687
-      NEO4J_USER: neo4j
-      NEO4J_PASSWORD: ${NEO4J_PASSWORD}
-      NEO4J_CURRENTDB: neo4j
-      SECRET_KEY: ${SECRET_KEY}
-      TUBXZ_ROOT: /app
-      TUBETL_DATA: /mnt/tubetl_data
-      NCBI_TAXA_SQLITE: /app/.etetoolkit/taxa.sqlite
-    volumes:
-      - /mount/webhosting_dmz_write/tubulin/data:/mnt/tubetl_data
-      - /mount/webhosting_dmz_write/tubulin/log:/var/log/tubxz:ro
-    depends_on:
-      neo4j:
-        condition: service_healthy
-    healthcheck:
-      test: ["CMD", "curl", "-f", "http://localhost:8000/health"]
-      interval: 30s
-      timeout: 5s
-      retries: 3
-      start_period: 15s
-    restart: always
-    networks:
-      - backend
-      - tubulinxyz_backend
-    stop_grace_period: 30s
-    logging:
-      driver: json-file
-      options:
-        max-size: "50m"
-        max-file: "5"
-    deploy:
-      resources:
-        limits:
-          memory: 2G
-
-  scheduler:
-    image: ghcr.io/rtviii/tubulinxyz:latest
-    pull_policy: always
-    environment:
-      NEO4J_URI: bolt://neo4j:7687
-      NEO4J_USER: neo4j
-      NEO4J_PASSWORD: ${NEO4J_PASSWORD}
-      NEO4J_CURRENTDB: neo4j
-      TUBXZ_ROOT: /app
-      TUBETL_DATA: /mnt/tubetl_data
-      NCBI_TAXA_SQLITE: /app/.etetoolkit/taxa.sqlite
-    volumes:
-      - /mount/webhosting_dmz_write/tubulin/data:/mnt/tubetl_data
-      - /mount/webhosting_dmz_write/tubulin/log:/var/log/tubxz
-    depends_on:
-      neo4j:
-        condition: service_healthy
-    entrypoint: ["/bin/sh", "/app/scripts/start_scheduler.sh"]
-    restart: always
-    networks:
-      - tubulinxyz_backend
-    logging:
-      driver: json-file
-      options:
-        max-size: "50m"
-        max-file: "5"
-    deploy:
-      resources:
-        limits:
-          memory: 4G
-
-  frontend:
-    image: ghcr.io/rtviii/tubulinxyz-frontend:latest
-    pull_policy: always
-    depends_on:
-      backend:
-        condition: service_healthy
-    restart: always
-    networks:
-      - backend
-      - tubulinxyz_backend
-    logging:
-      driver: json-file
-      options:
-        max-size: "50m"
-        max-file: "3"
-    deploy:
-      resources:
-        limits:
-          memory: 512M
-
+#   # João Pedro Agostinho de Sousa <joao.agostinho-de-sousa@psi.ch>
+#   # tubulin.xyz
+#   neo4j:
+#     image: neo4j:5
+#     environment:
+#       NEO4J_AUTH: neo4j/${NEO4J_PASSWORD}
+#       NEO4J_server_memory_heap_initial__size: 1G
+#       NEO4J_server_memory_heap_max__size: 2G
+#       NEO4J_server_memory_pagecache_size: 1G
+#     volumes:
+#       - /mount/webhosting_dmz_write/tubulin/neo4j/data:/data
+#       - /mount/webhosting_dmz_write/tubulin/neo4j/logs:/logs
+#     healthcheck:
+#       test:
+#         [
+#           "CMD",
+#           "cypher-shell",
+#           "-u",
+#           "neo4j",
+#           "-p",
+#           "${NEO4J_PASSWORD}",
+#           "RETURN 1",
+#         ]
+#       interval: 10s
+#       timeout: 5s
+#       retries: 10
+#       start_period: 30s
+#     restart: always
+#     networks:
+#       - tubulinxyz_backend
+#     stop_grace_period: 60s
+#     logging:
+#       driver: json-file
+#       options:
+#         max-size: "50m"
+#         max-file: "5"
+#     deploy:
+#       resources:
+#         limits:
+#           memory: 4G
+#
+#   bootstrap:
+#     image: ghcr.io/rtviii/tubulinxyz:latest
+#     pull_policy: always
+#     environment:
+#       NEO4J_URI: bolt://neo4j:7687
+#       NEO4J_USER: neo4j
+#       NEO4J_PASSWORD: ${NEO4J_PASSWORD}
+#       NEO4J_CURRENTDB: neo4j
+#       TUBXZ_ROOT: /app
+#       TUBETL_DATA: /mnt/tubetl_data
+#       NCBI_TAXA_SQLITE: /app/.etetoolkit/taxa.sqlite
+#     volumes:
+#       - /mount/webhosting_dmz_write/tubulin/data:/mnt/tubetl_data
+#       - /mount/webhosting_dmz_write/tubulin/log:/var/log/tubxz
+#     depends_on:
+#       neo4j:
+#         condition: service_healthy
+#     entrypoint: ["/bin/sh", "/app/scripts/init_and_seed.sh"]
+#     restart: always
+#     networks:
+#       - tubulinxyz_backend
+#     logging:
+#       driver: json-file
+#       options:
+#         max-size: "50m"
+#         max-file: "3"
+#     deploy:
+#       resources:
+#         limits:
+#           memory: 4G
+#
+#   backend:
+#     image: ghcr.io/rtviii/tubulinxyz:latest
+#     pull_policy: always
+#     environment:
+#       NEO4J_URI: bolt://neo4j:7687
+#       NEO4J_USER: neo4j
+#       NEO4J_PASSWORD: ${NEO4J_PASSWORD}
+#       NEO4J_CURRENTDB: neo4j
+#       SECRET_KEY: ${SECRET_KEY}
+#       TUBXZ_ROOT: /app
+#       TUBETL_DATA: /mnt/tubetl_data
+#       NCBI_TAXA_SQLITE: /app/.etetoolkit/taxa.sqlite
+#     volumes:
+#       - /mount/webhosting_dmz_write/tubulin/data:/mnt/tubetl_data
+#       - /mount/webhosting_dmz_write/tubulin/log:/var/log/tubxz:ro
+#     depends_on:
+#       neo4j:
+#         condition: service_healthy
+#     healthcheck:
+#       test: ["CMD", "curl", "-f", "http://localhost:8000/health"]
+#       interval: 30s
+#       timeout: 5s
+#       retries: 3
+#       start_period: 15s
+#     restart: always
+#     networks:
+#       - backend
+#       - tubulinxyz_backend
+#     stop_grace_period: 30s
+#     logging:
+#       driver: json-file
+#       options:
+#         max-size: "50m"
+#         max-file: "5"
+#     deploy:
+#       resources:
+#         limits:
+#           memory: 2G
+#
+#   scheduler:
+#     image: ghcr.io/rtviii/tubulinxyz:latest
+#     pull_policy: always
+#     environment:
+#       NEO4J_URI: bolt://neo4j:7687
+#       NEO4J_USER: neo4j
+#       NEO4J_PASSWORD: ${NEO4J_PASSWORD}
+#       NEO4J_CURRENTDB: neo4j
+#       TUBXZ_ROOT: /app
+#       TUBETL_DATA: /mnt/tubetl_data
+#       NCBI_TAXA_SQLITE: /app/.etetoolkit/taxa.sqlite
+#     volumes:
+#       - /mount/webhosting_dmz_write/tubulin/data:/mnt/tubetl_data
+#       - /mount/webhosting_dmz_write/tubulin/log:/var/log/tubxz
+#     depends_on:
+#       neo4j:
+#         condition: service_healthy
+#     entrypoint: ["/bin/sh", "/app/scripts/start_scheduler.sh"]
+#     restart: always
+#     networks:
+#       - tubulinxyz_backend
+#     logging:
+#       driver: json-file
+#       options:
+#         max-size: "50m"
+#         max-file: "5"
+#     deploy:
+#       resources:
+#         limits:
+#           memory: 4G
+#
+#   frontend:
+#     image: ghcr.io/rtviii/tubulinxyz-frontend:latest
+#     pull_policy: always
+#     depends_on:
+#       backend:
+#         condition: service_healthy
+#     restart: always
+#     networks:
+#       - backend
+#       - tubulinxyz_backend
+#     logging:
+#       driver: json-file
+#       options:
+#         max-size: "50m"
+#         max-file: "3"
+#     deploy:
+#       resources:
+#         limits:
+#           memory: 512M
+#
 networks:
  public:
  backend: