Cafe 1.21 setup script and module template final

.gitignore

@@ -9,5 +9,7 @@ SL6-x86_64
 windows-x64
 felix-cache
 readme.txt
-makefile_rel*
+makefile_rel_1.1*
+makefile_rel_1.3*
+makefile_rel_1.20*
 *.*.orig

RHEL8-x86_64/2022b/mcaunlock.m

@@ -8,4 +8,4 @@ function mcaunlock;
 % loosing channel access connections.
 %mca(0);
 mocha('mexUnlock');
-disp('mca mex-file is now UNLOCKED');
+%disp('mca mex-file is now UNLOCKED');

macchinettaSwitch.cpp

@@ -501,7 +501,7 @@ void macchinettaFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prh
         break;
 
     case MOCHA_VERSION:
-        plhs[0]=mxCreateString((char *) "mocha-1.20.1 : 7 May 2024");
+        plhs[0]=mxCreateString((char *) "mocha-1.21.0 : 12 July 2024; Contact: Felix Armborst");
         break;
 
     case SHOW:

makefile_rel_1.21-gcc-10.4.0

@@ -0,0 +1,105 @@
+#
+# Jan Chrin
+# Version: July 2019 - Qt5 
+#
+# makefile to build mocha mex file
+# printenv | grep MATLAB to reveal your MATLAB Directory
+#
+#
+# local executables are built in  ./${EPICS_HOST_ARCH}/$(MVER)
+# where the MATLAB version is grepped from $(MATLAB)
+
+MATLAB_ROOT=${MATLAB}
+MATLAB_VERSION=$(notdir $(MATLAB_ROOT))
+
+##### CHANGE AS APPROPRIATE #################
+#Mocha Version to install
+MOCHA_VERSION=mocha-1.21.0-gcc-10.4.0
+#CAFE version to link to
+CAFE_VERSION=cafe-1.21.0-gcc-10.4.0
+
+EPICS_BASE=${EPICS}/base-7.0.8
+#CAFE project base
+CAFE_BASE=/opt/gfa/cafe
+CAFE_MOCHA_BASE=${CAFE_BASE}/mocha
+CAFE_CPP_BASE=$(CAFE_BASE)/cpp/$(CAFE_VERSION)
+BOOST_BASE=${CAFE_BASE}/boost/boost_1_61_0/include
+
+CAFE_OBJS_DIR = $(CAFE_BASE)/cpp/$(CAFE_VERSION)/lib/$(EPICS_HOST_ARCH)/libcafe.a
+
+#if qt5 has libQt5Core.so link
+#QT5_DIR= /opt/psi/Cafe/cafe-matlab/${MATLAB_VERSION}/libexec
+QT5_DIR= ${MATLAB_ROOT}/bin/glnxa64
+
+INSTALL_MOCHA_LIBDIR= $(CAFE_MOCHA_BASE)/$(MOCHA_VERSION)/lib/$(EPICS_HOST_ARCH)/$(MATLAB_VERSION)
+#############################################
+
+
+#First deteremine if we are on a 32/64 bit machine
+#as mex file extensions are named differently
+pattern64=x86_64
+pattern32=i386
+
+PWD=$(shell pwd)
+      #hardware platform   
+      HW=$(shell uname -i)
+      ifeq ($(pattern64),$(findstring $(pattern64), $(HW)))
+        MEXE=mexa64
+	      MATLAB_LIB = $(MATLAB_ROOT)/bin/glnxa64 
+      else
+	ifeq ($(pattern32),$(findstring $(pattern32), $(HW)))	
+	  MEXE=mexglx
+	  MATLAB_LIB = $(MATLAB_ROOT)/bin/glnxa86 
+	endif
+      endif
+
+INSTALL_PATH?=$(INSTALL_MOCHA_LIBDIR)
+OBJ_DIR= ${EPICS_HOST_ARCH}/$(MATLAB_VERSION)
+
+INCLUDEPATH_MOCHA += -I$(MATLAB_ROOT)/extern/include \
+ -I$(CAFE_CPP_BASE)/include -I./ \
+ -I$(EPICS_BASE)/include -I$(EPICS_BASE)/include/os/Linux \
+ -I$(EPICS_BASE)/include/compiler/gcc
+
+INCLUDEPATH_MACHINETTA += $(INCLUDEPATH_MOCHA) -I$(BOOST_BASE) -I$(BOOST_BASE)/boost 
+
+
+# linkage to qt5 required if cafe built with Qt5
+#-lboost_system -lboost_thread-mt
+LIBS += -ldl -lca -lCom -lmx -lmex -lmat -lQt5Core -lQt5Xml
+#LIBS += -lmx -lmex -lmat
+
+$(OBJ_DIR)/mocha.$(MEXE): mocha.cpp $(OBJ_DIR)/macchinettaSwitch.o
+	mex CXXFLAGS='$(CXXFLAGS) -v -largeArrayDims -ansi -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++1z' \
+	'LDFLAGS=-L$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -Wl,-rpath,$(EPICS_BASE)/lib/${EPICS_HOST_ARCH}  -L${QT5_DIR} -Wl,-rpath,${QT5_DIR} -L$(MATLAB_LIB) -Wl,-rpath,$(MATLAB_LIB) $(LIBS)' \
+	 mocha.cpp $(OBJ_DIR)/macchinettaSwitch.o $(CAFE_OBJS_DIR) \
+	-outdir $(OBJ_DIR) -output mocha.$(MEXE) \
+	$(INCLUDEPATH_MOCHA)
+	cp example.m $(OBJ_DIR)
+	cp scripts/*.m $(OBJ_DIR)
+	cp scripts/test.xml  $(OBJ_DIR)
+
+
+$(OBJ_DIR)/macchinettaSwitch.o: macchinettaSwitch.cpp macchinettaHelper.h \
+					macchinetta.h containerMochaccino.h
+	mex CXXFLAGS='-v -largeArrayDims -ansi -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++1z' \
+	-c macchinettaSwitch.cpp $(INCLUDEPATH_MACHINETTA) 'LDFLAGS=-L$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -Wl,-rpath,$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -L$(MATLAB_LIB) -Wl,-rpath,$(MATLAB_LIB) $(LIBS)' -outdir $(OBJ_DIR)   
+
+install: $(OBJ_DIR)/mocha.$(MEXE)
+	mkdir -p $(INSTALL_PATH)
+	mex  CXXFLAGS='-v -largeArrayDims -ansi -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++1z' \
+	mocha.cpp $(OBJ_DIR)/macchinettaSwitch.o $(CAFE_OBJS_DIR) -outdir $(INSTALL_PATH) -output mocha.$(MEXE) $(INCLUDEPATH_MOCHA) \
+	'LDFLAGS=-L$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -Wl,-rpath,$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -L$(MATLAB_LIB) -Wl,-rpath,$(MATLAB_LIB)  $(LIBS)'
+
+	cp example.m $(INSTALL_PATH)
+	cp scripts/*.m $(INSTALL_PATH)
+	cp scripts/test.xml  $(INSTALL_PATH)
+
+install_lib: $(OBJ_DIR)/libmacchinetta.so
+	mkdir -p $(INSTALL_PATH)
+	cp $(OBJ_DIR)/libmacchinetta.so  $(INSTALL_PATH)
+
+clean:
+	rm -f $(OBJ_DIR)/*.o $(OBJ_DIR)/*.so $(OBJ_DIR)/*.$(MEXE)
+
+print-%  : ; @echo $* = $($*)

makefile_rel_1.21-gcc-10.4.0.sh

@@ -0,0 +1,5 @@
+module unload gcc
+module load gcc/10.4.0
+echo "$1"
+action=$1
+make -f makefile_rel_1.21-gcc-10.4.0 -s $action

makefile_rel_1.21-gcc-7.3.0

@@ -0,0 +1,105 @@
+#
+# Jan Chrin
+# Version: July 2019 - Qt5 
+#
+# makefile to build mocha mex file
+# printenv | grep MATLAB to reveal your MATLAB Directory
+#
+#
+# local executables are built in  ./${EPICS_HOST_ARCH}/$(MVER)
+# where the MATLAB version is grepped from $(MATLAB)
+
+MATLAB_ROOT=${MATLAB}
+MATLAB_VERSION=$(notdir $(MATLAB_ROOT))
+
+##### CHANGE AS APPROPRIATE #################
+#Mocha Version to install
+MOCHA_VERSION=mocha-1.21.0-gcc-7.3.0
+#CAFE version to link to
+CAFE_VERSION=cafe-1.21.0-gcc-7.3.0
+
+EPICS_BASE=${EPICS}/base-7.0.8
+#CAFE project base
+CAFE_BASE=/opt/gfa/cafe
+CAFE_MOCHA_BASE=${CAFE_BASE}/mocha
+CAFE_CPP_BASE=$(CAFE_BASE)/cpp/$(CAFE_VERSION)
+BOOST_BASE=${CAFE_BASE}/boost/boost_1_61_0/include
+
+CAFE_OBJS_DIR = $(CAFE_BASE)/cpp/$(CAFE_VERSION)/lib/$(EPICS_HOST_ARCH)/libcafe.a
+
+#if qt5 has libQt5Core.so link
+#QT5_DIR= /opt/psi/Cafe/cafe-matlab/${MATLAB_VERSION}/libexec
+QT5_DIR= ${MATLAB_ROOT}/bin/glnxa64
+
+INSTALL_MOCHA_LIBDIR= $(CAFE_MOCHA_BASE)/$(MOCHA_VERSION)/lib/$(EPICS_HOST_ARCH)/$(MATLAB_VERSION)
+#############################################
+
+
+#First deteremine if we are on a 32/64 bit machine
+#as mex file extensions are named differently
+pattern64=x86_64
+pattern32=i386
+
+PWD=$(shell pwd)
+      #hardware platform   
+      HW=$(shell uname -i)
+      ifeq ($(pattern64),$(findstring $(pattern64), $(HW)))
+        MEXE=mexa64
+	      MATLAB_LIB = $(MATLAB_ROOT)/bin/glnxa64 
+      else
+	ifeq ($(pattern32),$(findstring $(pattern32), $(HW)))	
+	  MEXE=mexglx
+	  MATLAB_LIB = $(MATLAB_ROOT)/bin/glnxa86 
+	endif
+      endif
+
+INSTALL_PATH?=$(INSTALL_MOCHA_LIBDIR)
+OBJ_DIR= ${EPICS_HOST_ARCH}/$(MATLAB_VERSION)
+
+INCLUDEPATH_MOCHA += -I$(MATLAB_ROOT)/extern/include \
+ -I$(CAFE_CPP_BASE)/include -I./ \
+ -I$(EPICS_BASE)/include -I$(EPICS_BASE)/include/os/Linux \
+ -I$(EPICS_BASE)/include/compiler/gcc
+
+INCLUDEPATH_MACHINETTA += $(INCLUDEPATH_MOCHA) -I$(BOOST_BASE) -I$(BOOST_BASE)/boost 
+
+
+# linkage to qt5 required if cafe built with Qt5
+#-lboost_system -lboost_thread-mt
+LIBS += -ldl -lca -lCom -lmx -lmex -lmat -lQt5Core -lQt5Xml
+#LIBS += -lmx -lmex -lmat
+
+$(OBJ_DIR)/mocha.$(MEXE): mocha.cpp $(OBJ_DIR)/macchinettaSwitch.o
+	mex CXXFLAGS='$(CXXFLAGS) -v -largeArrayDims -ansi -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++1z' \
+	'LDFLAGS=-L$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -Wl,-rpath,$(EPICS_BASE)/lib/${EPICS_HOST_ARCH}  -L${QT5_DIR} -Wl,-rpath,${QT5_DIR} -L$(MATLAB_LIB) -Wl,-rpath,$(MATLAB_LIB) $(LIBS)' \
+	 mocha.cpp $(OBJ_DIR)/macchinettaSwitch.o $(CAFE_OBJS_DIR) \
+	-outdir $(OBJ_DIR) -output mocha.$(MEXE) \
+	$(INCLUDEPATH_MOCHA)
+	cp example.m $(OBJ_DIR)
+	cp scripts/*.m $(OBJ_DIR)
+	cp scripts/test.xml  $(OBJ_DIR)
+
+
+$(OBJ_DIR)/macchinettaSwitch.o: macchinettaSwitch.cpp macchinettaHelper.h \
+					macchinetta.h containerMochaccino.h
+	mex CXXFLAGS='-v -largeArrayDims -ansi -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++1z' \
+	-c macchinettaSwitch.cpp $(INCLUDEPATH_MACHINETTA) 'LDFLAGS=-L$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -Wl,-rpath,$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -L$(MATLAB_LIB) -Wl,-rpath,$(MATLAB_LIB) $(LIBS)' -outdir $(OBJ_DIR)   
+
+install: $(OBJ_DIR)/mocha.$(MEXE)
+	mkdir -p $(INSTALL_PATH)
+	mex  CXXFLAGS='-v -largeArrayDims -ansi -fexceptions -fPIC -fno-omit-frame-pointer -pthread -std=c++1z' \
+	mocha.cpp $(OBJ_DIR)/macchinettaSwitch.o $(CAFE_OBJS_DIR) -outdir $(INSTALL_PATH) -output mocha.$(MEXE) $(INCLUDEPATH_MOCHA) \
+	'LDFLAGS=-L$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -Wl,-rpath,$(EPICS_BASE)/lib/${EPICS_HOST_ARCH} -L$(MATLAB_LIB) -Wl,-rpath,$(MATLAB_LIB)  $(LIBS)'
+
+	cp example.m $(INSTALL_PATH)
+	cp scripts/*.m $(INSTALL_PATH)
+	cp scripts/test.xml  $(INSTALL_PATH)
+
+install_lib: $(OBJ_DIR)/libmacchinetta.so
+	mkdir -p $(INSTALL_PATH)
+	cp $(OBJ_DIR)/libmacchinetta.so  $(INSTALL_PATH)
+
+clean:
+	rm -f $(OBJ_DIR)/*.o $(OBJ_DIR)/*.so $(OBJ_DIR)/*.$(MEXE)
+
+print-%  : ; @echo $* = $($*)

makefile_rel_1.21-gcc-7.3.0.sh

@@ -0,0 +1,5 @@
+module unload gcc
+module load gcc/7.3.0
+echo "$1"
+action=$1
+make -f makefile_rel_1.21-gcc-7.3.0 -s $action

modulefile_template

@@ -0,0 +1,20 @@
+#%Module1.0
+
+module-whatis		"mocha matlab executable"
+module-url		"https://cafe.psi.ch"
+module-license 		"GPL V3"
+module-maintainer	"Felix Armborst <felix.armborst@psi.ch>"
+
+module-help	"
+Versions
+  RHEL	vrhel
+  EPICS	vepics
+  GCC	vgcc
+  CAFE	vcafe  
+
+Further details under https://cafe.psi.ch/mocha.html 
+"
+
+module load matlab/vmatlab
+
+prepend-path MATLABPATH "$PREFIX/libexec"

setup_each_matlab.sh

@@ -0,0 +1,108 @@
+#!/bin/bash
+
+# user prompt for setup step
+while [[ ! $step =~ ^(0|1|2|3|4|5|6)$ ]]
+do
+	echo "Which setup step should be run?"
+	echo "   0 - cleanup (make clean)"
+	echo "   1 - local build (make)"
+	echo "   2 - test local build (matlab -batch ...)"
+	echo "   3 - install build to /opt/gfa/cafe/mocha/ (make install)"
+	echo "   4 - deploy build to pmodules"
+	echo "   5 - update pmodule info files"
+	echo "   6 - test module (module load && matlab -batch ...)"
+	read -p "choose step (0-6): " step
+done
+
+ca office network
+module use Cafe
+vrhel=${RHREL}
+vcafe=1.21.0
+vepics=7.0.8
+
+for vmatlab in 2024a 2023b 2023a 2022b 2022a 2021b 2021a 2020b 2020a 2019b 2019a 2018b 2018a
+do
+	if [[ "$vmatlab" =~ ^(2018a|2018b|2019a|2019b|2020a|2020b|2021a|2021b)$ ]]; then
+		vgcc=7.3.0
+	elif [[ "$vmatlab" =~ ^(2022a|2022b|2023a|2023b|2024a)$ ]]; then
+		vgcc=10.4.0
+	fi
+	printf "\n\n\n=======================================================================\n"
+	printf "=======================================================================\n"
+	echo "Versions"
+	echo "  Matlab: $vmatlab"
+	echo "  RHEL: $vrhel"
+	echo "  gcc: $vgcc"
+	echo "  Cafe: $vcafe"
+	echo "  EPICS: $vepics"
+	printf "=======================================================================\n"
+	printf "=======================================================================\n"
+	module unload cafe-matlab
+	module unload matlab
+	module load matlab/$vmatlab
+	module unload gcc
+    	module load gcc/$vgcc
+	module list
+	
+	if [ $step -eq 0 ]; then
+		echo "0 - cleanup (make clean)"
+		make -f makefile_rel_1.21-gcc-$vgcc clean
+
+	elif [ $step -eq 1 ]; then
+		echo "1 - local build (make)"
+		make -f makefile_rel_1.21-gcc-$vgcc
+
+	elif [ $step -eq 2 ]; then
+		echo "2 - test local build (matlab -batch ...)"
+		if [[ "$vmatlab" =~ ^(2019a|2019b|2020a|2020b|2021a|2021b|2022a|2022b|2023a|2023b|2024a)$ ]]; then
+			matlab -batch "cd RHEL8-x86_64/$vmatlab;disp(mocha('version'));example"
+		else
+			matlab -nodisplay -nosplash -nodesktop -r "cd RHEL8-x86_64/$vmatlab;disp(mocha('version'));example;exit"
+		fi
+
+	elif [ $step -eq 3 ]; then
+		echo "3 - install build to /opt/gfa/cafe/mocha/ (make install)"
+		make -f makefile_rel_1.21-gcc-$vgcc install
+
+	elif [ $step -eq 4 ]; then
+		echo "4 - deploy build to pmodules"
+		new_dir="/opt/psi/Cafe/cafe-matlab/$vmatlab-$vrhel-gcc-$vgcc-cafe-$vcafe/libexec"
+		src_dir="/opt/gfa/cafe/mocha/mocha-$vcafe-gcc-$vgcc/lib/$vrhel-x86_64/$vmatlab"
+
+		echo "  new Dir: $new_dir"
+		echo "  src Dir: $src_dir"
+
+		mkdir -p $new_dir
+		# cp mocha mex file
+		cp $src_dir/* $new_dir
+		# cp mca/ca scripts
+		cp /afs/psi.ch/project/cafe/gitlab/CAFE/mocha/scripts/* $new_dir
+		ls -la $new_dir
+		rm -f /opt/psi/Cafe/cafe-matlab/$vmatlab
+		ln -s $vmatlab-$vrhel-gcc-$vgcc-cafe-$vcafe /opt/psi/Cafe/cafe-matlab/$vmatlab
+	elif [ $step -eq 5 ]; then
+		echo "5 - update pmodule info files"
+		cp modulefile_template $vmatlab
+		sed -i -e "s/vmatlab/$vmatlab/g" $vmatlab
+		sed -i -e "s/vrhel/$vrhel/g" $vmatlab
+		sed -i -e "s/vepics/$vepics/g" $vmatlab
+		sed -i -e "s/vgcc/$vgcc/g" $vmatlab
+		sed -i -e "s/vcafe/$vcafe/g" $vmatlab
+
+		cp $vmatlab /opt/psi/Cafe/modulefiles/cafe-matlab/$vmatlab
+		rm $vmatlab
+
+	elif [ $step -eq 6 ]; then
+		echo "6 - test module (module load && matlab -batch ...)"
+		
+		echo $vmatlab	
+		module help cafe-matlab/$vmatlab
+		module load cafe-matlab/$vmatlab
+		module list
+		if [[ "$vmatlab" =~ ^(2019a|2019b|2020a|2020b|2021a|2021b|2022a|2022b|2023a|2023b|2024a)$ ]]; then
+			matlab -batch "cd RHEL8-x86_64/$vmatlab;disp(mocha('version'));example"
+		else
+			matlab -nodisplay -nosplash -nodesktop -r "cd RHEL8-x86_64/$vmatlab;disp(mocha('version'));example;exit"
+		fi
+	fi
+done