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• 46b00807c8 Fix a bug that I introduced in fancy_ptycho's oversampling, and also update some example scripts levita_a 2024-02-26 13:44:46 +01:00
• d7c7e8f396 start getting the docs back up to date levita_a 2024-02-23 16:54:48 +01:00
• 2e6db5517d get the projected views for bragg_2d_Ptycho working levita_a 2024-02-22 15:57:35 +01:00
• 30f9b142b6 Fix up bragg_2d_ptycho a bit and add model.save_on_exception levita_a 2024-02-22 14:41:07 +01:00
• 5925ee74ab Checked and fixed the tests, got them all running Abe Levitan 2024-02-12 14:55:14 -05:00
• 1502d567bf honestly, not sure Abe Levitan 2024-02-12 09:49:26 -05:00
• dd30f58d2d Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop Abe Levitan 2024-02-11 17:32:41 -05:00
• 44a6fac37a Add a tool to split ptycho datasets and a context manager to save .mat files, and slightly adjust the save format Abe Levitan 2024-02-11 10:29:07 -05:00
• e48970f7a9 Add an option for probe fourier crop to Bragg 2D Ptycho Abraham Levitan 2024-02-10 13:42:22 -05:00
• d0a0d12521 Add a normalize reconstruction set function levita_a 2024-01-04 16:50:10 +01:00
• 7c269cff47 remove an errant print statement levita_a 2023-12-04 15:35:05 +01:00
• f3b6ac9056 fix the numerical stability issue in the angular spectrum propagator code, but remove the ability to choose whether or not to include an explicit z dependence levita_a 2023-12-04 15:29:40 +01:00
• a9e0157707 Get tests to past and removeopt_for_fft levita_a 2023-12-01 15:58:18 +01:00
• 8ef3411604 Whoops I forgot some files in the last commit Abe Levitan 2023-11-08 13:09:54 +01:00
• 1f44fdd57c Some misc work toward the no analyzer jones matrix model (polarization swept) Abe Levitan 2023-11-08 13:09:10 +01:00
• e8023703a0 Start documenting the models, and change the default FOV on fancy_ptycho reconstruction inspections Abe Levitan 2023-05-10 14:05:31 -07:00
• 88aedcc448 Update the poisson loss function to use xlogy and start work on the poisson + detector loss function Abe Levitan 2023-08-15 10:47:50 -07:00
• a5699ed508 fix the oversampling + finite pixel issue Abe Levitan 2023-03-15 12:05:54 -07:00
• 10cffb62c3 Add wavelength info to the data saved by fancy_ptycho Abe Levitan 2023-02-16 17:26:56 -08:00
• 9f341fb4bd update the requirements files and fix a bug that prevented install when not in developer mode Abe Levitan 2023-01-13 11:59:07 -08:00
• a260168d9d Honestly I don't know, I must have forgotten to commit something Abe Levitan 2023-01-10 16:30:35 -08:00
• e13b519e22 some horrible state but I need to stop developing on perlmutter abe 2022-10-17 16:32:59 -07:00
• cb954a6067 Fix the annoying warning printing from interactions and get a minimum usable script going for simpleptycho and distributeddataparallel abe 2022-10-16 17:06:44 -07:00
• 1a34aaef60 Start making changes to enable multi-GPU, beginning with simple_ptycho Abe Levitan 2022-10-16 12:01:55 -07:00
• 978c9d3206 Add an option to simulate finite pixel sizes Abe Levitan 2022-09-29 14:14:43 -07:00
• 036fa8ea2c remove dependency on fftpack completely Abe Levitan 2022-08-19 10:02:11 -07:00
• b8b508ce2c remove a dependency on scipy fftpack Abe Levitan 2022-08-19 09:30:41 -07:00
• a37b30f06d And update the readme Abe Levitan 2022-06-08 13:33:17 -07:00
• 08eb1ad2ef And update the readme Abe Levitan 2022-06-08 13:32:39 -07:00
• 858d8f3b2a Make edits to the docs to handle the lowercaseness of cdtools now Abe Levitan 2022-06-08 13:30:49 -07:00
• 672096085b renamed to lowercase Abe Levitan 2022-06-08 13:13:13 -07:00
• b8500bd5a8 renaming Abe Levitan 2022-06-08 13:12:50 -07:00
• 883ac0175a Changed module name no lowercase because that's really how it should be Abe Levitan 2022-06-08 12:52:33 -07:00
• 442fa2c71f move to a src directory layout Abe Levitan 2022-06-08 12:09:03 -07:00
• c3fef28314 Clean some stuff that should have been in the polarization channel, get ready for pytorch's move to xy-style meshgrid Abe Levitan 2022-06-08 11:11:46 -07:00
• 54ddb078e1 make some changes relating to oversampling in FancyPtycho Abe Levitan 2022-06-08 11:01:16 -07:00
• 101e969eda Fix the failing tests Abe Levitan 2022-04-18 17:18:20 -07:00
• f3cee949e0 Merging a whole buncha work back into master Abe Levitan 2022-04-18 15:51:45 -07:00
• 20a1479859 Updating LBFGS line search type Abe Levitan 2022-04-07 15:26:33 -07:00
• ddcc5bbab4 Fix ptycho_2d_dataset Abe Levitan 2022-03-08 10:01:26 -05:00
• 571fe19ca3 fixing compression Abe Levitan 2022-02-25 12:40:23 -05:00
• ab8c959652 fixing compression Abe Levitan 2022-02-25 12:25:01 -05:00
• 26b2ecd812 add compression to data saving tools Abe Levitan 2022-02-25 12:16:41 -05:00
• c1663fa964 Add some tools for datasets to store input intensity measurements Abe Levitan 2022-02-22 20:36:50 -05:00
• 0d91272766 Create a base version of the models Abe Levitan 2022-02-15 15:16:07 -05:00
• c66de47f95 Misc updates Abe Levitan 2022-02-01 17:04:46 -05:00
• 2c8f60a11c Add a tool to account for the probe position movement on the detector to fancy_ptycho Abe Levitan 2021-11-12 15:41:17 -05:00
• 6d4cf4067c Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization Abe Levitan 2021-10-26 20:42:23 -04:00
• 1a214b76e4 Small changes to fix stuff Abe Levitan 2021-10-26 20:40:48 -04:00
• 1b5ef2271c Buncha stuff, sorry I wasn't pushing Abe Levitan 2021-10-26 13:11:11 -04:00
• 190808f90c . Anastasiia Kutakh 2021-08-27 12:41:34 -04:00
• 950fe9bdca Merge branch 'polarization' of https://github.mit.edu/Scattering/CDTools into polarization Anastasiia Kutakh 2021-08-27 12:35:29 -04:00
• d48624bf23 . Anastasiia Kutakh 2021-08-27 12:35:06 -04:00
• 24f213d03c Merge with Anastasia's changes Abe Levitan 2021-08-27 11:47:05 -04:00
• 37a97a9618 Fix the input polarizer issue Abe Levitan 2021-08-27 11:46:14 -04:00
• d7697433ba . Anastasiia Kutakh 2021-08-27 05:16:48 -04:00
• c38664c89f Merge branch 'polarization' of https://github.mit.edu/Scattering/CDTools into polarization Anastasiia Kutakh 2021-08-27 01:37:07 -04:00
• b8a4abf7ad . Anastasiia Kutakh 2021-08-27 01:36:36 -04:00
• cd6a811a63 Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization Abe Levitan 2021-08-25 17:06:34 -04:00
• ebafc44acb Minor tweak to initializations Abe Levitan 2021-08-25 17:06:30 -04:00
• e7c15273fa . Anastasiia Kutakh 2021-08-24 11:31:35 -04:00
• d0bca7633b . Anastasiia Kutakh 2021-08-24 01:26:11 -04:00
• aadd720f1e . Anastasiia Kutakh 2021-08-20 23:46:24 -04:00
• 53742d0245 . Anastasiia Kutakh 2021-08-20 21:45:27 -04:00
• 8493a3fb41 . Anastasiia Kutakh 2021-08-20 17:19:28 -04:00
• 540cc997b5 . Anastasiia Kutakh 2021-08-20 11:52:23 -04:00
• 26148f80cb . Anastasiia Kutakh 2021-08-15 23:59:08 -04:00
• 998245ae4a '.' Abe Levitan 2021-08-13 14:17:12 -04:00
• 45f01264c0 Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization Abe Levitan 2021-08-11 14:23:41 -04:00
• 096ec4ff20 Add analysis tools for comparing incoherent wavefields Abe Levitan 2021-08-11 14:23:38 -04:00
• 7f1f7cd8f6 . Anastasiia Kutakh 2021-08-10 15:42:12 -04:00
• 7daabf8409 . Anastasiia Kutakh 2021-08-10 15:29:33 -04:00
• 3db2d0cdf6 . Anastasiia Kutakh 2021-08-05 22:55:43 -04:00
• 5f93deb11e modified polarization and polarization tests Anastasiia Kutakh 2021-08-05 18:51:15 -04:00
• 894a5c697e modified polarization and polarization tests Anastasiia Kutakh 2021-08-05 18:47:46 -04:00
• f84e441843 Standardize the way that data is copied when models are created Abe Levitan 2021-08-05 16:21:58 -04:00
• faceb139d3 Add a function to save out the currently open plots Abe Levitan 2021-08-05 14:39:53 -04:00
• 03fb541f88 Edits to the polarization function Abe Levitan 2021-08-05 13:17:25 -04:00
• 3e6072acb7 Finally remove the scourge of from __future__ import ... and remove any lingering suggestion that this code is python 2 compatible Abe Levitan 2021-08-05 11:08:13 -04:00
• 960740f39f Go over Anastasia's polarization tests and clean up repo a bit Abe Levitan 2021-08-05 10:44:32 -04:00
• 14114f2bd4 Add tests to confirm that that the generation of angular spectrum propagators works with AD (and fix gasp so it indeed is) Abe Levitan 2021-08-04 22:32:58 -04:00
• b3e45af06e Move the polarized ptycho dataset class back to loading data from the actual stored motor positions, and fix the test for the gaussian probe Abe Levitan 2021-08-04 19:43:20 -04:00
• 7421c8527c Merge branch 'polarization' of github.mit.edu:Scattering/CDTools into polarization Abe Levitan 2021-08-04 15:40:09 -04:00
• 5afff73b53 Fix dataset loading so it doesn't use so much dang memory Abe Levitan 2021-08-04 15:38:55 -04:00
• daeac7e983 . Anastasiia Kutakh 2021-08-04 09:39:49 -04:00
• 9f580102ba . Anastasiia Kutakh 2021-08-04 00:09:54 -04:00
• 35c1643721 . Anastasiia Kutakh 2021-08-04 00:04:29 -04:00
• bf4db86ad4 . Anastasiia Kutakh 2021-08-03 23:59:23 -04:00
• 21036f625a . Anastasiia Kutakh 2021-08-03 23:52:19 -04:00
• 1925739174 . Anastasiia Kutakh 2021-08-03 22:54:39 -04:00
• 6adce3a575 . Anastasiia Kutakh 2021-08-03 22:33:32 -04:00
• 8f9cefac05 . Anastasiia Kutakh 2021-08-03 22:06:53 -04:00
• 3bc3622910 '.' Abe Levitan 2021-08-03 20:24:43 -04:00
• 24475dbdac '.' Abe Levitan 2021-08-03 20:14:15 -04:00
• 5d4fba7819 '.' Abe Levitan 2021-08-03 19:54:18 -04:00
• 2db49807d3 Merge branch 'polarization' of https://github.mit.edu/Scattering/CDTools into polarization Abe Levitan 2021-08-03 19:34:39 -04:00
• 061b7f647a '.' Abe Levitan 2021-08-03 19:34:08 -04:00
• 8c22c99d66 . Anastasiia Kutakh 2021-08-03 13:57:25 -04:00
• 332541c951 '.' Abe Levitan 2021-08-03 03:14:00 -04:00
• eb64770258 . Anastasiia Kutakh 2021-08-03 02:25:29 -04:00