allevitan
e7f943e254
Made a few more updates to some example scripts, to show the panel plot mode
2026-03-20 17:35:25 +01:00
allevitan and Claude Sonnet 4.6
f4260837bc
Add title option to plot_image and wrappers; misc fixes
...
- Add title parameter to plot_image, plot_real, plot_imag, plot_amplitude,
plot_phase, and plot_colorized
- Various fixes to base.py and fancy_ptycho.py
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-03-20 17:20:52 +01:00
allevitan and Claude Sonnet 4.6
dd744a00a4
Improve plotting infrastructure and fix various bugs
...
- Switch panel plots to use subfigures with constrained_layout for better layout management
- Add plot_loss_history method to CDIModel base class
- Fix matplotlib compatibility for older versions (interactive backend detection)
- Make CUDA usage conditional in examples
- Add panel_plot_mode and plot_level params to FancyPtycho constructor
- Default plot_level filtering to 1 instead of 0
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
2026-03-20 15:33:49 +01:00
levita_a
44fe36d24f
Kill a bunch of bugs and make the flow more sensible by hand
2026-03-20 11:09:13 +01:00
levita_a
1d57005b33
Add the example data
2026-02-06 13:28:00 +01:00
levita_a
a97e4cdf39
Add licensed near-field ptycho data to enable testing
2026-01-14 17:01:11 +01:00
levita_a
8328b852d3
Update the docs to include the reconstructors class and discuss their use in the examples
2025-10-16 14:43:04 +02:00
levita_a
3c8de5dc19
Update the example codes
2025-10-16 14:16:12 +02:00
allevitan
059c253756
Added authorship and copyright info to license for data
2024-10-13 11:46:09 -04:00
levita_a
2ed4802755
Add a CC BY license to the included datasets
2024-10-10 17:41:36 +02:00
Abe Levitan
13a2ba86df
Make big changes to docs to update the tutorial section, and also to finally autoload the documentation of the models and datasets
2024-09-01 13:04:28 +02:00
levita_a
7b2509cfe1
remove useless old examples, and update the examples and docs to be useful for the current version
2024-02-26 17:56:19 +01:00
levita_a
46b00807c8
Fix a bug that I introduced in fancy_ptycho's oversampling, and also update some example scripts
2024-02-26 13:44:46 +01:00
levita_a
d7c7e8f396
start getting the docs back up to date
2024-02-23 16:54:48 +01:00
levita_a
2e6db5517d
get the projected views for bragg_2d_Ptycho working
2024-02-22 15:57:35 +01:00
Abe Levitan
5925ee74ab
Checked and fixed the tests, got them all running
2024-02-12 14:55:26 -05:00
Abe Levitan
1502d567bf
honestly, not sure
2024-02-12 09:49:26 -05:00
Abe Levitan
dd30f58d2d
Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop
2024-02-11 17:32:41 -05:00
Abe Levitan
44a6fac37a
Add a tool to split ptycho datasets and a context manager to save .mat files, and slightly adjust the save format
2024-02-11 10:29:07 -05:00
levita_a
a9e0157707
Get tests to past and removeopt_for_fft
2023-12-01 15:58:18 +01:00
Abe Levitan
e8023703a0
Start documenting the models, and change the default FOV on fancy_ptycho reconstruction inspections
2023-10-17 15:38:48 +02:00
Abe Levitan
a260168d9d
Honestly I don't know, I must have forgotten to commit something
2023-01-10 16:30:35 -08:00
abe
e13b519e22
some horrible state but I need to stop developing on perlmutter
2022-10-17 16:32:59 -07:00
abe
cb954a6067
Fix the annoying warning printing from interactions and get a minimum usable script going for simpleptycho and distributeddataparallel
2022-10-16 17:06:44 -07:00
Abe Levitan
1a34aaef60
Start making changes to enable multi-GPU, beginning with simple_ptycho
2022-10-16 12:01:55 -07:00
Abe Levitan
883ac0175a
Changed module name no lowercase because that's really how it should be
2022-06-08 12:52:33 -07:00
Abe Levitan
53cd966c33
Update the RPI model and clean up the examples section
2021-07-06 13:58:00 -04:00
Abe Levitan
8ddcc7683f
Start cleaning up the repo and tidying up the example scripts
2021-06-28 11:14:41 -04:00
Abe Levitan
76e6d5efae
get tests working
2021-06-21 16:55:34 -04:00
Abe Levitan
a3765e9097
remove all reference to cmath, get code and tests to the point where they run at least.
2021-06-17 16:47:24 -04:00
Abe Levitan
188a685503
Fix a bug in multislice where it doesn't work when prevent_alias is set to True
2021-06-02 14:48:57 -04:00
Abe Levitan
2854a872ee
Make a program to visualize the shot to shot fluctuations when using the unified mode model
2021-04-08 16:28:24 -04:00
Abe Levitan
f6f8084978
Added unified modes to multislice, added units to fancy_ptycho, and added more sane normalization option (for reconstructions) to unified mode models
2021-03-11 17:01:55 -05:00
Abe Levitan
d664bf351b
Remove the original, worse unified mode model, and update the plotting functions to handle stacks of images, very helpful for multislice and also multi-mode models
2021-02-04 18:55:55 -05:00
Abe Levitan
3acd1ece3c
Make it so it doesn't require a crazy amount of memory
2021-01-26 22:46:15 -05:00
Abe Levitan
a536e3bdb4
Maybe last time it didn't actually commit?
2021-01-25 13:38:38 -05:00
Abe Levitan
936b203aac
Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
2020-12-28 22:09:20 -05:00
Abe Levitan
6b735a431f
Clean up namespaces and also add a test of RPI with incoherent probes
2020-12-28 21:32:18 -05:00
Abe Levitan
4be2af8609
Finally finally finally add an RPI model. Makes it soooo much easier...
2020-12-22 14:12:51 -05:00
Abe Levitan
aea0ff9bf8
Write a multislice and s_matrix ptychography program
2020-10-28 13:55:04 -04:00
Abe Levitan
19f61ab946
Add option for propagation vector separate from offset vector
2020-04-29 17:55:00 -04:00
Abe Levitan
a5b2337293
Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
2020-04-29 13:50:13 -04:00
Abe Levitan
8d589eef86
Merge branch 'master' of github.mit.edu:Scattering/CDTools
2020-01-25 19:01:11 -05:00
Abe Levitan
a1cca0dcea
misc updates
2020-01-25 19:01:03 -05:00
Abraham Levitan
f78a39daf5
add the test for simple_ptycho_model'
2019-10-07 15:44:17 -04:00
Abe Levitan
120e23ef15
Write the model and dataset tutorials, update the dependencies, and various small bug fixes
2019-10-04 16:53:22 -04:00
Abe Levitan
f58f3cc2c5
misc small changes
2019-10-02 13:27:32 -04:00
Abe Levitan
40998908f1
refactor datasets, wrote more docs, added one more test dataset
2019-09-09 14:16:42 -04:00
Abe Levitan
99d02f95cf
Finish fleshing out the examples
2019-09-04 18:23:34 -04:00
Abe Levitan
e80bf05f25
Further improve docs layout and add unfinished ptycho models to repo
2019-09-04 16:27:55 -04:00
allevitan
levita_a