 levita_a
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c03d4284f2
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Fix the issue with obj view padding in Bragg2DPtycho not working with a probe fourier crop
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2024-12-23 10:10:40 +01:00 |
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levita_a
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a22ae1b476
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Fix the issue with oversampling in bragg 2d ptycho when correct_tilt=True, and fix one other issue with object sizing in bragg 2d ptycho with oversampling
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2024-12-22 16:59:30 +01:00 |
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levita_a
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08a77ce5c6
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Add the object view crop to Bragg2DPtycho for parity, and add a small fix to obj_view_crop which limits the view expansion to the actual object array size
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2024-12-22 15:08:23 +01:00 |
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 allevitan
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41fa25fdef
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Merge pull request #7 from cdtools-developers/dataset-downsample
Add a function to downsample a dataset by an integer factor
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2024-12-09 11:10:24 +01:00 |
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levita_a
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ba7c8a17c6
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Add a function to downsample a dataset by an integer factor
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2024-12-06 15:59:56 +01:00 |
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allevitan
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93a5083455
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Merge pull request #6 from cdtools-developers/report_msg
CDIModel: Refactor report method
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2024-11-19 09:19:58 +01:00 |
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Clemens Schmid
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eee9ac073b
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Pad epoch index
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2024-11-11 17:20:49 +01:00 |
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Clemens Schmid
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4a3349bbad
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CDIModel: Refactor report method
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2024-11-11 09:04:31 +01:00 |
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clemisch
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ce16fbcedc
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Merge pull request #5 from cdtools-developers/numpy2
Add support for numpy 2.0
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2024-11-08 15:17:39 +01:00 |
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allevitan
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26f4eb4cd1
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Merge pull request #3 from cdtools-developers/citation
Added a citation.cff file
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2024-10-25 10:05:26 +02:00 |
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allevitan
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6097d5549c
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Added a citation.cff file
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2024-10-25 10:02:30 +02:00 |
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allevitan
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a86fe10e1f
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Merge pull request #2 from cdtools-developers/license
Add a license!
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2024-10-25 00:42:34 +02:00 |
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levita_a
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0cbfb556f5
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Add all contributors to the license
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2024-10-25 00:39:49 +02:00 |
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allevitan
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40651eaf54
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Remove the various deprication warnings related to converting h5py datasets to arrays with np.array()
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2024-10-14 08:30:15 -04:00 |
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allevitan
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e9e2fd4bee
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Get all tests passing
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2024-10-13 13:14:19 -04:00 |
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allevitan
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25224d4d44
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deal with the string_ related issues
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2024-10-13 13:08:17 -04:00 |
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allevitan
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059c253756
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Added authorship and copyright info to license for data
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2024-10-13 11:46:09 -04:00 |
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levita_a
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2ed4802755
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Add a CC BY license to the included datasets
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2024-10-10 17:41:36 +02:00 |
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levita_a
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2f16c43a11
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Add an MIT license to the repo to prep for open release
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2024-10-10 17:26:28 +02:00 |
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allevitan
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7fba211b5d
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Merge pull request #1 from cdtools-developers/signal_estimate
Add the tools to quickly estimate the signal level from raw data
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2024-09-20 13:44:51 +02:00 |
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levita_a
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30593c9c5c
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Get the mean pattern to show up by default with dataset.inspect()
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2024-09-20 13:42:12 +02:00 |
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levita_a
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6b2358df36
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Add a fourier translation to fancy ptycho
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2024-09-19 18:09:37 +02:00 |
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levita_a
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ad9420c3f2
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random things
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2024-09-17 14:46:56 +02:00 |
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levita_a
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1052d5bcb6
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Move documentation to the new organization
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2024-09-02 14:23:59 +02:00 |
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allevitan
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3b6b0534af
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Merge pull request #1 from allevitan/organization
Organization
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2024-09-02 11:20:37 +02:00 |
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Abe Levitan
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13a2ba86df
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Make big changes to docs to update the tutorial section, and also to finally autoload the documentation of the models and datasets
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2024-09-01 13:04:28 +02:00 |
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levita_a
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30a989fe3e
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Add first tests for models, and replace t.tensor with t.as_tensor in models
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2024-08-30 16:10:26 +02:00 |
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levita_a
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21b618d2e0
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Remove the vestigges of the polarization-dependent code. It belongs in it's own repo
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2024-08-30 14:13:36 +02:00 |
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levita_a
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47aa3c41e2
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Remove a bunch of models that really didn't belong in the main repo, and fix an issue with the RPI interaction conventions
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2024-08-30 11:53:20 +02:00 |
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levita_a
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b3b19554d0
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Add a phase only constraint to RPI and fancy_ptycho, misc small changes
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2024-08-30 11:29:51 +02:00 |
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levita_a
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35f140d348
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Fully replace orthogonalize_probes and update most models
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2024-07-25 17:35:48 +02:00 |
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levita_a
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943dde13e6
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Fix a remaining bug in orthogonalize_probes and also fix some lingering issues with the liveplotting for unified mode fancy ptycho
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2024-07-25 16:32:10 +02:00 |
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levita_a
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5141320c6f
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rewrite the probe orthogonalization for fancy_ptycho, and introduce a new probe orthogonalization tool in analysis. Also, update some tracking plots in fancy_ptycho
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2024-07-25 15:46:53 +02:00 |
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levita_a
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a02a0466ae
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fix a stupid bug I introduced at the last minute in the last commit
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2024-07-02 10:58:17 +02:00 |
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levita_a
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59d103f6d6
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update RPI to work with the latest data saving method, change dependence to latest pytorch for LBFGS to work on complex leaf tensors, and fix an issue with the test for the FRCs
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2024-07-01 17:16:07 +02:00 |
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levita_a
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ee0d483f26
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excise some old code from the RPI model that was making it fail, re: the old way of cropping out a detector slice
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2024-06-26 11:09:43 +02:00 |
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levita_a
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29d14c9537
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Get a basic version of checkpointing working
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2024-04-18 14:22:14 +02:00 |
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levita_a
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edc94ec09b
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Introducing new multislice model
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2024-04-18 09:28:03 +02:00 |
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levita_a
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7b2509cfe1
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remove useless old examples, and update the examples and docs to be useful for the current version
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2024-02-26 17:56:19 +01:00 |
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levita_a
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46b00807c8
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Fix a bug that I introduced in fancy_ptycho's oversampling, and also update some example scripts
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2024-02-26 13:44:46 +01:00 |
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levita_a
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d7c7e8f396
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start getting the docs back up to date
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2024-02-23 16:54:48 +01:00 |
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levita_a
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2e6db5517d
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get the projected views for bragg_2d_Ptycho working
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2024-02-22 15:57:35 +01:00 |
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levita_a
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30f9b142b6
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Fix up bragg_2d_ptycho a bit and add model.save_on_exception
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2024-02-22 14:41:07 +01:00 |
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Abe Levitan
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5925ee74ab
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Checked and fixed the tests, got them all running
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2024-02-12 14:55:26 -05:00 |
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Abe Levitan
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1502d567bf
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honestly, not sure
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2024-02-12 09:49:26 -05:00 |
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Abe Levitan
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dd30f58d2d
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Start to make the lab bragg ptycho code sane, and fix the bug with probe bases when using probe fourier crop
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2024-02-11 17:32:41 -05:00 |
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Abe Levitan
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44a6fac37a
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Add a tool to split ptycho datasets and a context manager to save .mat files, and slightly adjust the save format
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2024-02-11 10:29:07 -05:00 |
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Abraham Levitan
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e48970f7a9
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Add an option for probe fourier crop to Bragg 2D Ptycho
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2024-02-10 13:42:22 -05:00 |
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levita_a
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d0a0d12521
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Add a normalize reconstruction set function
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2024-01-04 16:50:10 +01:00 |
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levita_a
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7c269cff47
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remove an errant print statement
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2023-12-04 15:35:05 +01:00 |
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