 yoshikisd
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9792b141ef
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Merge remote-tracking branch 'origin/master' into multigpu
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2025-12-12 00:34:51 +00:00 |
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yoshikisd
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ebe5b54bea
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Merge remote-tracking branch 'origin/master' into multigpu
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2025-12-12 00:33:59 +00:00 |
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Dayne Yoshiki Sasaki
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126bfaa92c
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Merge pull request #62 from cdtools-developers/fix-divzero-error
Stop Ptycho2DDataset.inspec() from raising a divzero error in many situations
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2025-12-08 10:08:13 -08:00 |
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Abe Levitan
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9402939e40
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Merge pull request #63 from cdtools-developers/surface_normal
Make it easier to change the surface normal in Bragg2DPtycho.from_dataset
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2025-12-04 09:08:46 +01:00 |
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 levita_a
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8f3ad59c6d
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Suggested changes: Make surface_normal work with anything castable to an array with np.asarray, change the check for length-3 to cover all cases, and add a check to explicitly fail if the scattering_mode argument is improperly set, instead of silently falling back to default
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2025-12-02 15:27:20 +01:00 |
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yoshikisd
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7286bad264
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Added heirarchy of surface_normal definition in Bragg2DPtycho from_dataset
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2025-12-01 22:20:28 +00:00 |
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yoshikisd
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bac95b7636
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Make it easier to change surface normal in Bragg2DPtycho.from_dataset
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2025-11-20 21:42:19 +00:00 |
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levita_a
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c78b528930
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Change how the dataset mask is calculated, so that it only raises a divide by zero error if unmasked pixels have an issue. Add an option to ptycho_2d_dataset to plot the mask
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2025-11-19 10:46:01 +01:00 |
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Dayne Yoshiki Sasaki
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4a94ea13c9
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Merge pull request #61 from gnzng/customdocs
[docs] Adding instruction to build custom documentation based on version or commit hashes
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2025-11-18 13:12:38 -08:00 |
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gnzng
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444b56b829
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docs: update installation instructions for dependencies to include pip
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2025-11-16 11:21:36 -06:00 |
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gnzng
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4d18171e59
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docs: add instructions for building custom documentation
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2025-11-16 11:00:33 -06:00 |
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Dayne Yoshiki Sasaki
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36055d04be
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Merge pull request #59 from gnzng/quickfixdocs
fix: documentation build step to use Sphinx directly
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2025-11-12 14:54:57 -08:00 |
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gnzng
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f0f44e3c83
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fix: documentation build step to use Sphinx directly
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2025-11-12 11:54:17 -06:00 |
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Abe Levitan
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562bcab171
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Merge pull request #57 from gnzng/pyprojecttoml
Change to Pyproject.toml installation and uv, remove python 3.8 support, add python 3.13 and 3.14 support
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2025-11-12 16:41:21 +01:00 |
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gnzng
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3f46caf757
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update authors list in pyproject.toml and move further doc link
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2025-11-12 09:04:53 -06:00 |
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gnzng
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3c9e9eb1c7
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adding pure pip install pipeline to CI
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2025-11-12 08:59:37 -06:00 |
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gnzng
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11ed3df35e
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ending python 3.8 support, adding python 3.14 to automatic test
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2025-11-11 14:33:55 -06:00 |
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gnzng
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5a3e154e8d
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add Python 3.13 to the CI workflow matrix
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2025-11-10 12:50:59 -08:00 |
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gnzng
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e94499a6a4
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fix: update pytest command to use 'uv' for consistency in CI workflow
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2025-11-10 12:42:32 -08:00 |
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gnzng
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18c794b5db
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fix: add virtual environment creation step in CI github workflows
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2025-11-10 12:37:44 -08:00 |
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gnzng
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728cf9d590
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update readme and installation docs
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2025-11-10 12:23:25 -08:00 |
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gnzng
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be28903be7
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refactor: CI installation process to use 'uv' for faster dependency management
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2025-11-10 12:23:09 -08:00 |
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yoshikisd
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e5996a49fd
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Merge branch 'master' into multigpu
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2025-11-09 04:19:51 +00:00 |
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yoshikisd
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32e92562eb
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Added multi-GPU pytests
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2025-11-09 03:53:42 +00:00 |
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yoshikisd
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a8d2bfa07f
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Simplified the logic in MASTER_ADDR and MASTER_PORT definition in multigpu.setup
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2025-11-09 03:37:25 +00:00 |
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yoshikisd
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cd584fca81
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multigpu.setup now recognizes MASTER_ADDR and MASTER_PORT when setting up spawn-based jobs
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2025-11-09 03:34:08 +00:00 |
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yoshikisd
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cad3d9cc33
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Fixed linting issues on multigpu
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2025-11-09 00:32:50 +00:00 |
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yoshikisd
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1a3d0cd011
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Modified runtime error message in multigpu.setup
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2025-11-09 00:28:54 +00:00 |
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yoshikisd
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842bb49a01
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Added example script for running a multi-GPU speed test
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2025-11-09 00:19:18 +00:00 |
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yoshikisd
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6f15c362f3
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Added example scripts for running multi-GPU jobs with spawn or torchrun
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2025-11-09 00:19:00 +00:00 |
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yoshikisd
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b784620515
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Multi-GPU compatibility added for CDIModel
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2025-11-08 23:36:27 +00:00 |
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yoshikisd
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0f1f990e10
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Added a check for init_method in multigpu.setup
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2025-11-08 23:33:05 +00:00 |
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yoshikisd
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b0604d4595
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Prevent dataset from plotting/saving outside of Rank 0
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2025-11-08 06:46:23 +00:00 |
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yoshikisd
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8d8da151d7
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Multi-GPU compatability added for base Reconstructor and AdamReconstructor
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2025-11-08 06:41:48 +00:00 |
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yoshikisd
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10229e4e28
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Renamed cdtools.tools.distributed to cdtools.tools.multigpu. Also added several functions to multigpu
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2025-11-08 06:35:08 +00:00 |
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Abe Levitan
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5d43b05822
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Merge pull request #54 from gnzng/versiontests
Add tests for version existence and semantic format
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2025-10-31 11:47:25 +01:00 |
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gnzng
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f79836bfc2
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Add tests for version existence and semantic format
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2025-10-29 21:40:12 -07:00 |
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Damian Guenzing
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14e4c99ec7
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Merge pull request #53 from cdtools-developers/version_source_of_truth
Add cdtools.__version__ and set it up so that there is a single source of truth for the version number
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2025-10-29 21:34:33 -07:00 |
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levita_a
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008fef6244
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Add cdtools.__version__ and set it up so that there is a single source of truth for the version number. Still not done with setuptools_scm, but one step at a time)
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2025-10-28 16:06:21 +01:00 |
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Dayne Yoshiki Sasaki
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1fa9a75806
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Merge pull request #52 from cdtools-developers/bugfix/masking
Fix a high priority bug with the masking system which was introduced in the switch to reconstructors classes
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2025-10-24 07:14:41 -07:00 |
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levita_a
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e38ebd7372
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Fix a high priority bug with the masking system which was introduced in the switch to reconstructors classes
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2025-10-24 15:11:46 +02:00 |
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yoshikisd
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fded573ef8
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Added additional functions to distributed
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2025-10-20 01:07:32 +00:00 |
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yoshikisd
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0268f5bc97
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Created the distributed module
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2025-10-19 21:05:16 +00:00 |
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Dayne Yoshiki Sasaki
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fbfbf4fa87
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Merge pull request #49 from cdtools-developers/show_original_pos
Add the original positions to the fancy_ptycho position plotting
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2025-10-19 12:05:48 -07:00 |
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levita_a
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86e85e1853
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Fix a bug where the x-axis was double flipped
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2025-10-19 13:08:16 +02:00 |
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levita_a
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3eec9c0cec
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Add the original positions to the fancy_ptycho position plotting
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2025-10-19 12:45:19 +02:00 |
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Abe Levitan
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d9c4ebfdf3
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Merge pull request #47 from yoshikisd/refactor/reconstructors
Separate optimization methods from CDIModel into separate class Reconstructors
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2025-10-17 20:15:43 -03:00 |
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Dayne Yoshiki Sasaki
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6443b16f5c
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Merge pull request #1 from cdtools-developers/refactor/reconstructors
Various suggested changes for the reconstructors branch
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2025-10-17 15:58:47 -07:00 |
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levita_a
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7d39015719
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response to dayne's review
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2025-10-17 23:41:08 +02:00 |
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Abe LevitanandDayne Yoshiki Sasaki
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9d633074d8
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Apply suggestions from code review
Co-authored-by: Dayne Yoshiki Sasaki <37006268+yoshikisd@users.noreply.github.com>
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2025-10-17 18:37:38 -03:00 |
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