 gnzng
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88df4c0794
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linting test_image_processing.py and test_initializers.py
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2025-07-07 14:40:17 -07:00 |
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gnzng
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b00f39e1fe
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linting test_analysis.py and test_data.py
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2025-07-07 14:28:23 -07:00 |
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gnzng
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58246966f4
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Add W503 to flake8 ignore list, line break before binary operator
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2025-07-07 14:21:17 -07:00 |
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gnzng
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96d8b10792
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linting test_fancy_ptycho.py
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2025-07-07 14:11:50 -07:00 |
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gnzng
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ecb8ee4864
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linting test_simple_ptycho.py
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2025-07-07 13:59:35 -07:00 |
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gnzng
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745f7b73e6
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Fix background calculation in test_Ptycho2DDataset_downsample
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2025-07-07 13:55:54 -07:00 |
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gnzng
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f463144347
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linting test_datasets.py
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2025-07-07 13:49:46 -07:00 |
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gnzng
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4d812db68a
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restructured conftest.py imports
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2025-07-07 13:39:44 -07:00 |
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gnzng
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38be347a18
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lint conftest.py
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2025-07-07 13:38:52 -07:00 |
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gnzng
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93f5d1969d
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Add .flake8 configuration to ignore line length errors (E501)
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2025-07-07 12:53:06 -07:00 |
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Damian Guenzing
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603d47417b
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Merge pull request #43 from yoshikisd/bugfix/pytest_reconstruct
Set fixed RNG seed for reconstruction pytests
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2025-07-07 11:55:38 -07:00 |
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yoshikisd
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36de44565b
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Set fixed RNG seed for reconstruction pytests
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2025-07-07 15:16:12 +00:00 |
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Damian Guenzing
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3516405954
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Merge pull request #41 from cdtools-developers/pipdocs
Update the documentation to reflect the existence of a PyPI package.
I see I can just merge it.
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2025-07-02 10:00:50 -07:00 |
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 levita_a
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ab30afb10e
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Update the documentation to reflect the existence of a PyPI package
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2025-07-02 15:04:39 +02:00 |
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Dayne Yoshiki Sasaki
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b223011b0f
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Merge pull request #40 from cdtools-developers/fixpypinaming
fix: change name from cdtools to cdtools-py to match pypi naming
v0.3.0pypi1
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2025-06-30 10:17:37 -07:00 |
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Damian Guenzing
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1ecf001ad4
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change name from cdtools to cdtools-py to match pypi naming
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2025-06-29 21:14:49 +00:00 |
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Abe Levitan
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99139f59c9
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Merge pull request #39 from cdtools-developers/pypirelease
Add pypi workflow
v0.3.0pypi
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2025-06-29 11:11:50 +02:00 |
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gnzng
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302decd922
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remove version increase
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2025-06-23 15:46:32 -07:00 |
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gnzng
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2c764d4190
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add pypi workflow
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2025-06-23 15:38:44 -07:00 |
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Dayne Yoshiki Sasaki
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8c216aa7e6
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Merge pull request #36 from cdtools-developers/version0-3-0
Pin current codebase version to 0.3.0
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2025-06-23 09:37:16 -07:00 |
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gnzng
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951636e39f
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pin current version to 0.3.0
v0.3.0
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2025-06-18 14:09:43 -07:00 |
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Dayne Yoshiki Sasaki
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b95bdba1ef
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Merge pull request #35 from gnzng/float64
handling of 64-bit floats in Ptycho2DDataset cxi import
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2025-06-17 16:21:56 -07:00 |
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gnzng
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d7a1ea82c9
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adjusted warn msg based on Daynes suggestion
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2025-06-17 15:50:51 -07:00 |
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gnzng
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b189c3c2af
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Add warning for 64-bit float conversion in Ptycho2DDataset and added to tests
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2025-06-17 11:01:30 -07:00 |
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Abe Levitan
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eb19ce3995
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Merge pull request #32 from yoshikisd/bugfix/rpi_compare
[Bugfix] model.compare(dataset) does not work for the RPI test script
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2025-06-12 07:50:18 -04:00 |
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Dayne Yoshiki Sasaki
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31318819d0
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Merge branch 'cdtools-developers:master' into bugfix/rpi_compare
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2025-06-11 17:03:06 -07:00 |
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yoshikisd
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4c784de922
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Fixed sim_data shape change in CDIModel.compare for RPI measurements
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2025-06-12 00:02:32 +00:00 |
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Dayne Yoshiki Sasaki
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b3a70ec325
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Merge pull request #30 from cdtools-developers/variable_qe
Add the ability for fancy_ptycho to model detectors with spatially varying quantum efficiency
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2025-06-10 08:44:22 -07:00 |
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levita_a
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4ecc782c28
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Reply to Daynes comment's and slightly loosen a tolerance in one test that has been failing
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2025-06-10 14:11:01 +02:00 |
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levita_a
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b6bc7d95cc
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Change the behavior of FancyPtycho.center_probes to center the probe in real space even when fourier_probe is set to True
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2025-06-10 13:57:03 +02:00 |
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levita_a
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2c5587cacf
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Fix an issue for datasets with colinear translations
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2025-06-10 13:57:03 +02:00 |
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Dayne Yoshiki Sasaki
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da695c7c06
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Merge pull request #29 from cdtools-developers/center_probe_real_space
Change the behavior of FancyPtycho.center_probes to always center the probe in real space
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2025-06-09 19:17:10 -07:00 |
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Abe Levitan
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b74aa82c32
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Merge pull request #28 from cdtools-developers/bugfix/notranslationdataset
Fix an issue for datasets with colinear translations
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2025-05-20 11:52:00 +02:00 |
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levita_a
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2c2f2d2d93
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Add a way to save and load the quantum efficiency masks, and add test coverage
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2025-05-13 16:05:16 +02:00 |
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levita_a
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c86e505ae5
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Make it possible to add a quantum efficiency mask to a dataset, allow fancy_ptycho to load that and use it in the forward model
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2025-05-13 14:06:02 +02:00 |
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levita_a
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ac1499f511
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get it running in principle, but it is not good
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2025-05-12 16:55:26 +02:00 |
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levita_a
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91717b65d6
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Change the behavior of FancyPtycho.center_probes to center the probe in real space even when fourier_probe is set to True
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2025-05-12 16:46:28 +02:00 |
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levita_a
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cb5942c39a
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Fix an issue for datasets with colinear translations
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2025-05-12 16:07:12 +02:00 |
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Abe Levitan
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d853a141bf
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Merge pull request #26 from gnzng/update-doc-link
[minor doc fix] update links to automatic docs
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2025-04-02 18:32:31 +02:00 |
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Damian Guenzing
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a2ec05f63b
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Update CITATION.cff
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2025-04-01 10:45:07 -07:00 |
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Damian Guenzing
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dbd54f310b
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Update README.md
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2025-04-01 10:43:54 -07:00 |
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Dayne Yoshiki Sasaki
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1c434dd277
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Merge pull request #25 from cdtools-developers/bugfix/h5_strings
Bugfix/h5 strings
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2025-03-20 12:03:00 -07:00 |
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levita_a
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2fd917350d
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response to Dayne's review
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2025-03-20 10:46:24 +01:00 |
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levita_a
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5b6fd79b28
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Add tests for nested_dict_to_numpy and nested_dict_to_torch
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2025-03-18 13:13:47 +01:00 |
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levita_a
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a30930b082
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Fix bug with loading h5 files including strings, and add test coverage for h5_to_nested_dict and nested_dict_to_h5
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2025-03-18 11:54:06 +01:00 |
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Dayne Yoshiki Sasaki
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fce2add124
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Merge pull request #24 from gnzng/fix-doc-deployment
[fix] remove environment from github actions for docs deployment
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2025-03-07 13:23:00 -08:00 |
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gnzng
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48ca3a675a
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remove environment from github actions
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2025-03-07 08:48:33 -08:00 |
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allevitan
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ee7f7eecd4
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Merge pull request #21 from gnzng/master
Include docs in main repo and automatic deploy using github actions
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2025-03-07 16:25:05 +01:00 |
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allevitan
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54decc486a
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Merge pull request #22 from gnzng/fix-gaussian
Fix use of gaussian_probe() + typo
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2025-03-07 16:22:00 +01:00 |
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gnzng
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f8bebd0436
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typo, factor -> factors
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2025-03-04 14:21:51 -08:00 |
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