 Abe Levitan
|
188a685503
|
Fix a bug in multislice where it doesn't work when prevent_alias is set to True
|
2021-06-02 14:48:57 -04:00 |
|
|
Abe Levitan
|
2854a872ee
|
Make a program to visualize the shot to shot fluctuations when using the unified mode model
|
2021-04-08 16:28:24 -04:00 |
|
|
Abe Levitan
|
2774953c2a
|
Fix a bug in the incoherent probe mode update
|
2021-03-15 18:55:05 -04:00 |
|
|
Abe Levitan
|
f6f8084978
|
Added unified modes to multislice, added units to fancy_ptycho, and added more sane normalization option (for reconstructions) to unified mode models
|
2021-03-11 17:01:55 -05:00 |
|
|
Abe Levitan
|
6b7a0701a6
|
Update plotting functions to deal better with images that have multiple layers
|
2021-02-26 15:31:51 -05:00 |
|
|
Abe Levitan
|
cea860bdf9
|
Fix an issue with unified_mode_ptycho not working in model.compare, and fix colorbars for model.compare
|
2021-02-05 12:30:29 -05:00 |
|
|
Abe Levitan
|
d664bf351b
|
Remove the original, worse unified mode model, and update the plotting functions to handle stacks of images, very helpful for multislice and also multi-mode models
|
2021-02-04 18:55:55 -05:00 |
|
|
Abe Levitan
|
fdca857046
|
make some tweaks to how the multislice works
|
2021-01-30 09:22:15 -05:00 |
|
|
Abe Levitan
|
043751a8b6
|
Speed up the multislice model 5x, but probably break lots of other models doing it, so remember to clean upgit status
|
2021-01-27 22:33:45 -05:00 |
|
|
Abe Levitan
|
0dec5aa9fd
|
Intermediate state in optimization, improved the round interaction but not sinc yet
|
2021-01-27 20:27:31 -05:00 |
|
|
Abe Levitan
|
e265c85d6b
|
Touching in before I shred everything to improve efficiency
|
2021-01-27 19:27:21 -05:00 |
|
|
Abe Levitan
|
3acd1ece3c
|
Make it so it doesn't require a crazy amount of memory
|
2021-01-26 22:46:15 -05:00 |
|
|
Abe Levitan
|
a536e3bdb4
|
Maybe last time it didn't actually commit?
|
2021-01-25 13:38:38 -05:00 |
|
|
Abe Levitan
|
936b203aac
|
Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
|
2020-12-28 22:09:20 -05:00 |
|
|
Abe Levitan
|
32a8a8179d
|
Fix an issue with the test for the poisson NLL function
|
2020-12-28 21:45:01 -05:00 |
|
|
Abe Levitan
|
6b735a431f
|
Clean up namespaces and also add a test of RPI with incoherent probes
|
2020-12-28 21:32:18 -05:00 |
|
|
Abe Levitan
|
4be2af8609
|
Finally finally finally add an RPI model. Makes it soooo much easier...
|
2020-12-22 14:12:51 -05:00 |
|
|
Abe Levitan
|
75011eaccf
|
Make tweaks to the tilt correction to work with the grazing reflection data, add basic atom-modeling for electron ptychography, and update the multislice ptycho to include a bandlimit to avoid aliasing
|
2020-12-21 12:22:04 -05:00 |
|
|
Abe Levitan
|
38345da454
|
Update S matrix ptychography and also update the S matrix interaction function to use a more interpretable definition of the S matrix
|
2020-10-30 14:52:17 -04:00 |
|
|
Abe Levitan
|
aea0ff9bf8
|
Write a multislice and s_matrix ptychography program
|
2020-10-28 13:55:04 -04:00 |
|
|
Abe Levitan
|
0d484c0ac3
|
Fix sign error in generalized near field and associated test
|
2020-05-07 12:13:36 -04:00 |
|
|
Abe Levitan
|
31cc45da70
|
One more try to fix the off axis near field propagation
|
2020-05-04 16:53:50 -04:00 |
|
|
Abe Levitan
|
9771634551
|
Implement test for separate propagation and offset vectors
|
2020-04-29 20:11:03 -04:00 |
|
|
Abe Levitan
|
39cb345ccb
|
update docs
|
2020-04-29 17:56:48 -04:00 |
|
|
Abe Levitan
|
19f61ab946
|
Add option for propagation vector separate from offset vector
|
2020-04-29 17:55:00 -04:00 |
|
|
Abe Levitan
|
a5b2337293
|
Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
|
2020-04-29 13:50:13 -04:00 |
|
|
Abe Levitan
|
d586ed914e
|
Debug and test the off-axis propagation code
|
2020-04-24 14:16:44 -04:00 |
|
|
Abe Levitan
|
071eebd37b
|
Finish first pass of off-axis propagation, still needs to be tested off-axis
|
2020-04-23 20:37:13 -04:00 |
|
|
Abe Levitan
|
ad1a2e77b7
|
Update the exit_wave_geometry to handle paralellogram detectors
|
2020-04-23 17:39:16 -04:00 |
|
|
Abe Levitan
|
fbbecbd04c
|
First work on the off-axis propagator
|
2020-04-23 14:32:19 -04:00 |
|
|
Abe Levitan
|
d8486306f7
|
Fix a bug with oversampling in the measurement functions
|
2020-02-11 15:20:55 -05:00 |
|
|
Abe Levitan
|
5cac96ff24
|
Merge branch 'master' of github.mit.edu:Scattering/CDTools
|
2020-02-11 15:00:48 -05:00 |
|
|
Abe Levitan
|
7cbc3f2c53
|
Add a TITAN STEM converter and add units to the inspect function for fancy_ptycho
|
2020-02-11 15:00:42 -05:00 |
|
|
David Rower
|
8d89a86445
|
Fixing strings to avoid invalid escape sequence warning
|
2020-02-03 12:00:56 -05:00 |
|
|
Abe Levitan
|
8d589eef86
|
Merge branch 'master' of github.mit.edu:Scattering/CDTools
|
2020-01-25 19:01:11 -05:00 |
|
|
Abe Levitan
|
a1cca0dcea
|
misc updates
|
2020-01-25 19:01:03 -05:00 |
|
|
David Rower
|
7a243842b9
|
Fixing wrong theta convention in converter; fixing simple_ptycho bug in dictionary syntax
|
2020-01-23 17:20:25 -05:00 |
|
|
David Rower
|
486f58a86e
|
Fixed special case in get_entry_info function, adding metadata to sample in converteR
|
2020-01-23 11:53:07 -05:00 |
|
|
David Rower
|
384ced5b00
|
Using $\mu instead of um for micrometers
|
2019-12-11 16:19:45 -05:00 |
|
|
David Rower
|
3cf44cff9f
|
using greek \mu instead of u for axis labels ;)
|
2019-12-09 19:14:08 -05:00 |
|
|
David Rower
|
51eae81ee2
|
Fixed logical bug in get_detector_geometry, enforcing PEP 257 docstring convention of using periods
|
2019-12-09 13:50:36 -05:00 |
|
|
David Rower
|
b5f78b47c7
|
add_detector now flexible for both CXI and CDTools basis conventions
|
2019-12-09 13:37:11 -05:00 |
|
|
David Rower
|
d330e1b84e
|
Only adjusting colorbar when array is not a constant array (for consistency between shots), and added right/left keys for moving between shots
|
2019-12-03 15:32:16 -05:00 |
|
|
David Rower
|
256142e2f6
|
Fixing typo in analysis function documentation
|
2019-10-10 11:53:12 -04:00 |
|
|
Abe Levitan
|
e71c266fe4
|
Update the ptycho dataset with the new, more sensible, approach
|
2019-10-05 09:30:26 -04:00 |
|
|
Abe Levitan
|
e987d40df8
|
Remove last of t.tensor usage from dataset loading
|
2019-10-04 17:00:43 -04:00 |
|
|
Abe Levitan
|
120e23ef15
|
Write the model and dataset tutorials, update the dependencies, and various small bug fixes
|
2019-10-04 16:53:22 -04:00 |
|
|
Abe Levitan
|
bc7caebdd9
|
Fix the damn dataset.inspect thing
|
2019-10-03 17:49:10 -04:00 |
|
|
David Rower
|
8197eed50e
|
Fixed merging conflict - log scale in ptycho_2d_dataset.py
|
2019-10-03 15:25:27 -04:00 |
|
|
David Rower
|
61f8bf733e
|
Fixed a few bugs, 1) Title of relative displacement plot no longer dissapears, 2) slider now updates on click event, also added titles for colorbars.
|
2019-10-03 15:22:53 -04:00 |
|