 Dayne Yoshiki Sasaki
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126bfaa92c
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Merge pull request #62 from cdtools-developers/fix-divzero-error
Stop Ptycho2DDataset.inspec() from raising a divzero error in many situations
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2025-12-08 10:08:13 -08:00 |
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Abe Levitan
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9402939e40
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Merge pull request #63 from cdtools-developers/surface_normal
Make it easier to change the surface normal in Bragg2DPtycho.from_dataset
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2025-12-04 09:08:46 +01:00 |
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 levita_a
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8f3ad59c6d
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Suggested changes: Make surface_normal work with anything castable to an array with np.asarray, change the check for length-3 to cover all cases, and add a check to explicitly fail if the scattering_mode argument is improperly set, instead of silently falling back to default
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2025-12-02 15:27:20 +01:00 |
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yoshikisd
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7286bad264
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Added heirarchy of surface_normal definition in Bragg2DPtycho from_dataset
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2025-12-01 22:20:28 +00:00 |
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yoshikisd
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bac95b7636
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Make it easier to change surface normal in Bragg2DPtycho.from_dataset
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2025-11-20 21:42:19 +00:00 |
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levita_a
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c78b528930
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Change how the dataset mask is calculated, so that it only raises a divide by zero error if unmasked pixels have an issue. Add an option to ptycho_2d_dataset to plot the mask
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2025-11-19 10:46:01 +01:00 |
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Dayne Yoshiki Sasaki
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4a94ea13c9
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Merge pull request #61 from gnzng/customdocs
[docs] Adding instruction to build custom documentation based on version or commit hashes
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2025-11-18 13:12:38 -08:00 |
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gnzng
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444b56b829
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docs: update installation instructions for dependencies to include pip
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2025-11-16 11:21:36 -06:00 |
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gnzng
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4d18171e59
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docs: add instructions for building custom documentation
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2025-11-16 11:00:33 -06:00 |
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Dayne Yoshiki Sasaki
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36055d04be
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Merge pull request #59 from gnzng/quickfixdocs
fix: documentation build step to use Sphinx directly
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2025-11-12 14:54:57 -08:00 |
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gnzng
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f0f44e3c83
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fix: documentation build step to use Sphinx directly
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2025-11-12 11:54:17 -06:00 |
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Abe Levitan
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562bcab171
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Merge pull request #57 from gnzng/pyprojecttoml
Change to Pyproject.toml installation and uv, remove python 3.8 support, add python 3.13 and 3.14 support
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2025-11-12 16:41:21 +01:00 |
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gnzng
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3f46caf757
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update authors list in pyproject.toml and move further doc link
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2025-11-12 09:04:53 -06:00 |
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gnzng
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3c9e9eb1c7
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adding pure pip install pipeline to CI
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2025-11-12 08:59:37 -06:00 |
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gnzng
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11ed3df35e
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ending python 3.8 support, adding python 3.14 to automatic test
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2025-11-11 14:33:55 -06:00 |
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gnzng
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5a3e154e8d
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add Python 3.13 to the CI workflow matrix
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2025-11-10 12:50:59 -08:00 |
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gnzng
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e94499a6a4
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fix: update pytest command to use 'uv' for consistency in CI workflow
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2025-11-10 12:42:32 -08:00 |
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gnzng
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18c794b5db
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fix: add virtual environment creation step in CI github workflows
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2025-11-10 12:37:44 -08:00 |
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gnzng
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728cf9d590
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update readme and installation docs
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2025-11-10 12:23:25 -08:00 |
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gnzng
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be28903be7
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refactor: CI installation process to use 'uv' for faster dependency management
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2025-11-10 12:23:09 -08:00 |
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Abe Levitan
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5d43b05822
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Merge pull request #54 from gnzng/versiontests
Add tests for version existence and semantic format
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2025-10-31 11:47:25 +01:00 |
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gnzng
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f79836bfc2
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Add tests for version existence and semantic format
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2025-10-29 21:40:12 -07:00 |
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Damian Guenzing
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14e4c99ec7
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Merge pull request #53 from cdtools-developers/version_source_of_truth
Add cdtools.__version__ and set it up so that there is a single source of truth for the version number
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2025-10-29 21:34:33 -07:00 |
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levita_a
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008fef6244
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Add cdtools.__version__ and set it up so that there is a single source of truth for the version number. Still not done with setuptools_scm, but one step at a time)
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2025-10-28 16:06:21 +01:00 |
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Dayne Yoshiki Sasaki
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1fa9a75806
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Merge pull request #52 from cdtools-developers/bugfix/masking
Fix a high priority bug with the masking system which was introduced in the switch to reconstructors classes
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2025-10-24 07:14:41 -07:00 |
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levita_a
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e38ebd7372
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Fix a high priority bug with the masking system which was introduced in the switch to reconstructors classes
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2025-10-24 15:11:46 +02:00 |
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Dayne Yoshiki Sasaki
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fbfbf4fa87
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Merge pull request #49 from cdtools-developers/show_original_pos
Add the original positions to the fancy_ptycho position plotting
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2025-10-19 12:05:48 -07:00 |
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levita_a
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86e85e1853
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Fix a bug where the x-axis was double flipped
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2025-10-19 13:08:16 +02:00 |
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levita_a
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3eec9c0cec
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Add the original positions to the fancy_ptycho position plotting
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2025-10-19 12:45:19 +02:00 |
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Abe Levitan
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d9c4ebfdf3
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Merge pull request #47 from yoshikisd/refactor/reconstructors
Separate optimization methods from CDIModel into separate class Reconstructors
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2025-10-17 20:15:43 -03:00 |
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Dayne Yoshiki Sasaki
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6443b16f5c
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Merge pull request #1 from cdtools-developers/refactor/reconstructors
Various suggested changes for the reconstructors branch
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2025-10-17 15:58:47 -07:00 |
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levita_a
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7d39015719
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response to dayne's review
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2025-10-17 23:41:08 +02:00 |
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Abe LevitanandDayne Yoshiki Sasaki
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9d633074d8
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Apply suggestions from code review
Co-authored-by: Dayne Yoshiki Sasaki <37006268+yoshikisd@users.noreply.github.com>
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2025-10-17 18:37:38 -03:00 |
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levita_a
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f022b5e2c4
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Get the tests passing again after the change of the optimization functions in the model classes
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2025-10-16 15:58:28 +02:00 |
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levita_a
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8328b852d3
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Update the docs to include the reconstructors class and discuss their use in the examples
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2025-10-16 14:43:04 +02:00 |
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levita_a
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3c8de5dc19
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Update the example codes
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2025-10-16 14:16:12 +02:00 |
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levita_a
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aa684f27eb
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Change the pattern for Reconstructor so that the optimizer is defined at object creation, and move the dataloader creation logic to the base optimize() function as it was reused in all subclasses
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2025-10-13 19:20:42 +02:00 |
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levita_a
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a089dc3b72
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Switch to a simpler pattern for the CDIModel.<algorithm>_optimize functions that preserves the old behavior when the old pattern is used
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2025-10-13 14:26:07 +02:00 |
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levita_a
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766a7d1adf
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Move to better supported strategy for avoiding circular imports
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2025-10-13 14:20:38 +02:00 |
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yoshikisd
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82ce845385
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Changed the names of the reconstructors and updated the old optimizer class documentation
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2025-08-04 16:51:24 +00:00 |
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yoshikisd
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1e7fe2eb5f
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Added pytests for reconstructors
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2025-08-01 22:31:40 +00:00 |
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yoshikisd
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404d03bbd3
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Rebased CDIModel to use Reconstructors for reconstructions.
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2025-08-01 21:51:52 +00:00 |
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yoshikisd
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76bc2fa75b
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Got rid of world_size attribute
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2025-08-01 21:50:35 +00:00 |
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yoshikisd
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0785eae552
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Created Reconstructors class to replace optimization methods in CDIModel
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2025-08-01 21:37:05 +00:00 |
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Abe Levitan
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25ca3a9317
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Merge pull request #44 from cdtools-developers/flake8
[Flake8] conf file and cleaned up test files
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2025-07-14 11:55:34 +02:00 |
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gnzng
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fc5a76ad61
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linting test_plotting.py and test_propagators.py
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2025-07-07 15:13:11 -07:00 |
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gnzng
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65e83753a8
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linting test_interactions.py, test_losses.py, and test_measurements.py
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2025-07-07 14:58:11 -07:00 |
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gnzng
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88df4c0794
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linting test_image_processing.py and test_initializers.py
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2025-07-07 14:40:17 -07:00 |
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gnzng
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b00f39e1fe
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linting test_analysis.py and test_data.py
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2025-07-07 14:28:23 -07:00 |
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gnzng
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58246966f4
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Add W503 to flake8 ignore list, line break before binary operator
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2025-07-07 14:21:17 -07:00 |
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