 Abe Levitan
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043751a8b6
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Speed up the multislice model 5x, but probably break lots of other models doing it, so remember to clean upgit status
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2021-01-27 22:33:45 -05:00 |
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Abe Levitan
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0dec5aa9fd
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Intermediate state in optimization, improved the round interaction but not sinc yet
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2021-01-27 20:27:31 -05:00 |
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Abe Levitan
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e265c85d6b
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Touching in before I shred everything to improve efficiency
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2021-01-27 19:27:21 -05:00 |
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Abe Levitan
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3acd1ece3c
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Make it so it doesn't require a crazy amount of memory
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2021-01-26 22:46:15 -05:00 |
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Abe Levitan
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a536e3bdb4
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Maybe last time it didn't actually commit?
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2021-01-25 13:38:38 -05:00 |
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Abe Levitan
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936b203aac
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Fix the issue with odd-sized probes & objs in RPI functions, still not fully tested
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2020-12-28 22:09:20 -05:00 |
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Abe Levitan
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32a8a8179d
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Fix an issue with the test for the poisson NLL function
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2020-12-28 21:45:01 -05:00 |
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Abe Levitan
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6b735a431f
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Clean up namespaces and also add a test of RPI with incoherent probes
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2020-12-28 21:32:18 -05:00 |
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Abe Levitan
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4be2af8609
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Finally finally finally add an RPI model. Makes it soooo much easier...
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2020-12-22 14:12:51 -05:00 |
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Abe Levitan
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75011eaccf
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Make tweaks to the tilt correction to work with the grazing reflection data, add basic atom-modeling for electron ptychography, and update the multislice ptycho to include a bandlimit to avoid aliasing
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2020-12-21 12:22:04 -05:00 |
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Abe Levitan
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38345da454
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Update S matrix ptychography and also update the S matrix interaction function to use a more interpretable definition of the S matrix
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2020-10-30 14:52:17 -04:00 |
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Abe Levitan
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aea0ff9bf8
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Write a multislice and s_matrix ptychography program
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2020-10-28 13:55:04 -04:00 |
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Abe Levitan
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0d484c0ac3
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Fix sign error in generalized near field and associated test
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2020-05-07 12:13:36 -04:00 |
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Abe Levitan
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31cc45da70
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One more try to fix the off axis near field propagation
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2020-05-04 16:53:50 -04:00 |
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Abe Levitan
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9771634551
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Implement test for separate propagation and offset vectors
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2020-04-29 20:11:03 -04:00 |
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Abe Levitan
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39cb345ccb
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update docs
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2020-04-29 17:56:48 -04:00 |
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Abe Levitan
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19f61ab946
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Add option for propagation vector separate from offset vector
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2020-04-29 17:55:00 -04:00 |
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Abe Levitan
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a5b2337293
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Further develop the 2D Bragg ptychography code and edit some tests to work with a newer version of h5py
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2020-04-29 13:50:13 -04:00 |
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Abe Levitan
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d586ed914e
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Debug and test the off-axis propagation code
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2020-04-24 14:16:44 -04:00 |
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Abe Levitan
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071eebd37b
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Finish first pass of off-axis propagation, still needs to be tested off-axis
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2020-04-23 20:37:13 -04:00 |
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Abe Levitan
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ad1a2e77b7
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Update the exit_wave_geometry to handle paralellogram detectors
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2020-04-23 17:39:16 -04:00 |
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Abe Levitan
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fbbecbd04c
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First work on the off-axis propagator
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2020-04-23 14:32:19 -04:00 |
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Abe Levitan
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d8486306f7
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Fix a bug with oversampling in the measurement functions
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2020-02-11 15:20:55 -05:00 |
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Abe Levitan
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5cac96ff24
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2020-02-11 15:00:48 -05:00 |
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Abe Levitan
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7cbc3f2c53
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Add a TITAN STEM converter and add units to the inspect function for fancy_ptycho
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2020-02-11 15:00:42 -05:00 |
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David Rower
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8d89a86445
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Fixing strings to avoid invalid escape sequence warning
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2020-02-03 12:00:56 -05:00 |
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Abe Levitan
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8d589eef86
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Merge branch 'master' of github.mit.edu:Scattering/CDTools
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2020-01-25 19:01:11 -05:00 |
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Abe Levitan
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a1cca0dcea
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misc updates
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2020-01-25 19:01:03 -05:00 |
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David Rower
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7a243842b9
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Fixing wrong theta convention in converter; fixing simple_ptycho bug in dictionary syntax
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2020-01-23 17:20:25 -05:00 |
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David Rower
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486f58a86e
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Fixed special case in get_entry_info function, adding metadata to sample in converteR
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2020-01-23 11:53:07 -05:00 |
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David Rower
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384ced5b00
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Using $\mu instead of um for micrometers
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2019-12-11 16:19:45 -05:00 |
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David Rower
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3cf44cff9f
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using greek \mu instead of u for axis labels ;)
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2019-12-09 19:14:08 -05:00 |
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David Rower
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51eae81ee2
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Fixed logical bug in get_detector_geometry, enforcing PEP 257 docstring convention of using periods
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2019-12-09 13:50:36 -05:00 |
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David Rower
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b5f78b47c7
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add_detector now flexible for both CXI and CDTools basis conventions
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2019-12-09 13:37:11 -05:00 |
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David Rower
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d330e1b84e
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Only adjusting colorbar when array is not a constant array (for consistency between shots), and added right/left keys for moving between shots
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2019-12-03 15:32:16 -05:00 |
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David Rower
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256142e2f6
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Fixing typo in analysis function documentation
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2019-10-10 11:53:12 -04:00 |
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Abe Levitan
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e71c266fe4
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Update the ptycho dataset with the new, more sensible, approach
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2019-10-05 09:30:26 -04:00 |
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Abe Levitan
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e987d40df8
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Remove last of t.tensor usage from dataset loading
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2019-10-04 17:00:43 -04:00 |
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Abe Levitan
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120e23ef15
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Write the model and dataset tutorials, update the dependencies, and various small bug fixes
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2019-10-04 16:53:22 -04:00 |
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Abe Levitan
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bc7caebdd9
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Fix the damn dataset.inspect thing
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2019-10-03 17:49:10 -04:00 |
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David Rower
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8197eed50e
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Fixed merging conflict - log scale in ptycho_2d_dataset.py
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2019-10-03 15:25:27 -04:00 |
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David Rower
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61f8bf733e
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Fixed a few bugs, 1) Title of relative displacement plot no longer dissapears, 2) slider now updates on click event, also added titles for colorbars.
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2019-10-03 15:22:53 -04:00 |
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Abe Levitan
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69be77cc09
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Update installation instructions for simplicity and also fix the tests to reflect new usage
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2019-10-02 15:56:48 -04:00 |
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Abe Levitan
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f58f3cc2c5
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misc small changes
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2019-10-02 13:27:32 -04:00 |
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Abe Levitan
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185fde27a0
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More work on documentation
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2019-09-11 17:56:54 -04:00 |
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Abe Levitan
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40998908f1
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refactor datasets, wrote more docs, added one more test dataset
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2019-09-09 14:16:42 -04:00 |
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Abe Levitan
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99d02f95cf
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Finish fleshing out the examples
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2019-09-04 18:23:34 -04:00 |
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Abe Levitan
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e80bf05f25
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Further improve docs layout and add unfinished ptycho models to repo
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2019-09-04 16:27:55 -04:00 |
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Abe Levitan
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de186592cb
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Update the docstrings on all the tools files and start laying out the docs for real
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2019-09-03 18:49:45 -04:00 |
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Abe Levitan
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1e3a98c599
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Add and build tests for a Fourier Ring Correlation method
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2019-08-17 10:39:35 -04:00 |
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