Changes from beamline as of 260804

pxiii_bec/device_configs/old/pxiii-rest-devices.yaml

@@ -0,0 +1,18 @@
+aerotech_x:
+  userParameter: {"type": continuous, "in": 0.0, "out": -10.0, "safe": -100, "tol": 0.5}
+aerotech_y:
+  userParameter: {"type": continuous, "mount": 0.0, "work": 0.01, "tol": 0.002}
+aerotech_z:
+  userParameter: {"type": continuous, "mount": 0.0, "work": 0.02, "tol": 0.01}
+aerotech_u:
+  userParameter: {"type": continuous, "mount": 0.0}
+smargon_x:
+  userParameter: {"type": continuous, "mount": 0.0}
+smargon_y:
+  userParameter: {"type": continuous, "mount": 0.0}
+smargon_z:
+  userParameter: {"type": continuous, "mount": 0.0}
+smargon_chi:
+  userParameter: {"type": continuous, "mount": 0.0}
+smargon_phi:
+  userParameter: {"type": continuous, "mount": 0.0}

pxiii_bec/device_configs/old/pxiii-state-devices.yaml

@@ -0,0 +1,130 @@
+bl_bright:
+  description: Backlight Brightness
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-BL:SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": continuous, "on": 1.3, "off": 0, “tol”: 0.01}
+
+bl_pos:
+  description: Backlight Positioner
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-BL:POS-SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": discrete, "in": 1, "out": 0}
+
+bs_pos:
+  description: Beamstop Positioner
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-BS:POS-SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": discrete, "in": 1, "out": 0}
+
+bs_z:
+  description: Beamstop Z
+  deviceClass: ophyd_devices.EpicsMotor
+  deviceConfig: {prefix: 'X06DA-ES-BS:TRZ'}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": continuous, "min": 13, "samp": 15, "work_min": 20, "safe": 25, "max_blin": 26, "max_blout": 35}
+
+coll_y:
+  description: Collimator Y
+  deviceClass: ophyd_devices.EpicsMotor
+  deviceConfig: {prefix: 'X06DA-ES-COL:TRY'}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": continuous, "in": 25.42, "intermediate": 15, "out":5.0, "park": 0,"tol":0.05}
+
+cryo_pos:
+  description: Cryo Positioner
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-CS:POS-SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": discrete, "in": 1, "out": 0}
+
+det_cov:
+  description: Detector Cover
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-DETCOV:SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": discrete, "open": 2, "close": 1}
+
+diag_y:
+  description: Scintillator/diode Y
+  deviceClass: ophyd_devices.EpicsMotor
+  deviceConfig: {prefix: 'X06DA-ES-SCL:TRY'}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": continuous, "scint": 22, "i1": 29, "out": 5.0,"park": 0,"tol":0.3}
+
+fl_bright:
+  description: Frontlight Brightness
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-FL:SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": continuous, "on": 3.0, "off": 0, “tol”: 0.01}
+
+xrf_pos:
+  description: XRF Positioner
+  deviceClass: ophyd.EpicsSignal
+  deviceConfig: {read_pv: 'X06DA-ES-XRF:POS-SET', auto_monitor: true}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - state
+  readOnly: False
+  softwareTrigger: false
+  userParameter: {"type": discrete, "in": 1, "out": 0}
+

pxiii_bec/device_configs/old/x06da_device_config.yaml

@@ -0,0 +1,30 @@
+base_config:
+   - !include ./pxiii-devices.yaml
+#states_config:
+#  - !include ./pxiii-state-devices.yaml
+  
+smargon:
+  description: REST-based device which connects to Smargopolo
+  deviceClass: pxiii_bec.devices.smargopolo_smargon.Smargon
+  deviceConfig: {prefix: 'http://x06da-smargopolo.psi.ch:3000'}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - smargon
+    - motors
+  readOnly: false 
+  softwareTrigger: false
+ 
+aerotech:
+  description: REST-based device which connects to AareScan and Aerotech
+  deviceClass: pxiii_bec.devices.aerotech.Aerotech
+  deviceConfig: {prefix: 'http://mx-x06da-queue-01:5234'}
+  onFailure: buffer
+  enabled: True
+  readoutPriority: baseline
+  deviceTags:
+    - aerotech
+    - motors
+  readOnly: false 
+  softwareTrigger: false

pxiii_bec/device_configs/pxiii-beamline-states.yaml

@@ -103,6 +103,7 @@ states:
     smargon_chi: mount
     smargon_phi: mount
     xrf_pos: out
+    det_z: 'mse'
 
   beam_visualisation:
     bl_pos: out
@@ -112,6 +113,7 @@ states:
     coll_y: in
     cryo_pos: out
     det_cov: 'close'
+    det_z: 'vis'
     diag_y: scint
     fl_bright: 'off'
     aerotech_x: out

pxiii_bec/macros/beamline_planner.py

@@ -95,20 +95,81 @@ class StateChangePlanner:
     def available_states(self):
         """Return a list of available states"""
         return list(self.states.keys())
+    
+    def state_devices(self):
+        """Return the set of devices that participate in
+        beamline state definitions"""
+
+        devices = set()
+
+        for state in self.states.values():
+            devices.update(state.keys())
+        
+        return sorted(devices)
 
     def get_positions(self):
-        """Return current positions of all SE devices"""
-        return {name: dev.pos for name, dev in self.devices.items()}
+        """Return current positions of devices that are used
+        in state transitions"""
+        return {name: self.devices[name].pos
+                for name in self.state_devices()}
 
     def print_positions(self):
         """Return current state of all devices"""
-        for name, device in self.devices.items():
-            print(f"{name:10s} : {device.pos:10s} value: {device.actual}")
+        for name in self.state_devices():
+            device = self.devices[name]
+
+            print(f"{name:10s} : {device.pos:10s} value: {device.actual:.5g}")
 
     def diff_states(self, before):
         """Return a dict of {device: (before, after)} pairs for devices that changed state"""
         after = self.get_positions()
         return {k: (before[k], after[k]) for k in before if before[k] != after[k]}
+    
+    def __get_closest_states(self):
+        """
+        Return states ordered by number of mismatches.
+        """
+
+        results = []
+
+        for state in self.states:
+
+            config = self._merged_state(state, None)
+
+            mismatches = []
+
+            for dev, expected in config.items():
+
+                if not self.devices[dev].is_at(expected):
+                    mismatches.append(
+                        (
+                            dev,
+                            self.devices[dev].pos,
+                            expected,
+                        )
+                    )
+
+            results.append(
+                (
+                    state.name,
+                    len(mismatches),
+                    mismatches,
+                )
+            )
+
+        return sorted(results, key=lambda x: x[1])
+
+    def closest_states(self, n=5):
+
+        for state, count, mismatches in self.__get_closest_states()[:n]:
+
+            print(f"\n{state}: {count} mismatch(es)")
+
+            for dev, actual, expected in mismatches:
+                print(
+                    f"  {dev:15s} "
+                    f"{actual:10s} -> {expected}"
+                )  
 
     def current_state(self):
         """Return all current matching BeamlineState and TemperatureMode combinations,

pxiii_bec/macros/beampos_with_en.py

@@ -0,0 +1,13 @@
+def beampos_with_en(planner):
+    deltat = 5 
+    bl_energy(6000)
+    record_beampos_until("23:30",planner,interval_minutes=deltat)
+    bl_energy(8000)
+    record_beampos_until("01:00",planner,interval_minutes=deltat)
+    bl_energy(10000)    
+    record_beampos_until("03:00",planner,interval_minutes=deltat)
+    bl_energy(12400)    
+    record_beampos_until("05:00",planner,interval_minutes=deltat)
+    bl_energy(14000)
+    record_beampos_until("07:00",planner,interval_minutes=deltat)
+        

pxiii_bec/macros/calibrate.py

@@ -0,0 +1,24 @@
+from datetime import datetime
+
+def generate_dccm_lut(start_energy=5000, end_energy=14000, step=1000):
+    """Generate a lookup table for the dcm from start_energy to end_energy in steps of step"""
+    now = datetime.now()
+    fnow = now.strftime("%d%m%H%M")
+    filename = f"luts/{fnow}_lut.csv"
+    with open(filename, "w", encoding="utf-8") as f:
+        # f.write("energy,pitch,roll,perp,ss_xicam_x,ss_xicam_y\n")
+        f.write("energy, pitch\n")
+
+    for energy in range(start_energy, end_energy, step):
+        print(f"Moving to {energy: .0f}eV")
+        bl_energy(energy)
+        pitch = EnergyDefaults.mono_pitch.position
+        # auto_exposure(cam="ss_xicam", max_iter=25)
+        # x = dev.ss_xicam_x.read()["ss_xicam_x"]["value"]
+        # y = dev.ss_xicam_y.read()["ss_xicam_y"]["value"]
+        with open(filename, "a", encoding="utf-8") as f:
+            f.write(
+                # f"{energy:.0f},{pitch:.5g},,{x:.4g},{y:.4g}\n"
+                (f"{energy:.0f},{pitch:.7g}\n")
+            )
+    bl_energy(13000)

pxiii_bec/macros/enums.bak

@@ -0,0 +1,22 @@
+"""Enums for beamline states"""
+from enum import Enum
+
+
+class BeamlineState(str, Enum):
+    """List of beamline states"""
+    ROBOT_SAMPLE_EXCHANGE = "robot_sample_exchange"
+    SAMPLE_ALIGNMENT = "sample_alignment"
+    DATA_COLLECTION = "data_collection"
+    DC_XRF = "DC_XRF"
+    MANUAL_SAMPLE_EXCHANGE = "manual_sample_exchange"
+    BEAM_VISUALISATION = "beam_visualisation"
+    FLUX_MEASUREMENT = "flux_measurement"
+    BEAMSTOP_ALIGNMENT = "beamstop_alignment"
+    MAINTENANCE = "maintenance"
+    XTAL_SNAPSHOT = "xtal_snapshot"
+
+
+class TemperatureMode(str, Enum):
+    """List of temperature modes"""
+    CRYO = "cryo"
+    ROOM_TEMP = "room_temp"

pxiii_bec/macros/luts/22060940_lut.csv

@@ -0,0 +1,10 @@
+energy, pitch
+5000,23.29268,23.2913
+6000,19.24199,19.2387
+7000,16.40998,16.4054
+8000,14.31298,14.3076
+9000,12.69568,12.6896
+10000,11.40928,11.4026
+11000,10.36128,10.3540
+12000,9.49058,9.48285
+13000,8.75558,8.7474

pxiii_bec/macros/luts/beampos/beampos19_20_clean_1306081012p414.csv

@@ -0,0 +1,119 @@
+Beam size: 25 x 20, Energy: 13001 eV, Zoom: 1000.0
+Time,Scin_x,Scin_y
+20:01:35, 1060.6, 1049
+20:06:37, 1046.3, 1046
+20:11:40, 1058.1, 1047
+20:16:42, 1067.3, 1050
+20:21:45, 1053.8, 1040
+20:26:48, 1061, 1040
+20:31:50, 1065.3, 1040
+20:36:53, 1056, 1044
+20:41:56, 1074.8, 1044
+20:46:59, 1054.1, 1040
+20:52:01, 1046.7, 1055
+20:57:04, 1066.2, 1045
+21:02:07, 1049.9, 1050
+21:04:24, 1038.8, 1034
+21:09:26, 1053.5, 1043
+21:14:29, 1055.6, 1051
+21:19:31, 1064.2, 1041
+21:24:34, 1061.8, 1050
+21:29:37, 1056.8, 1043
+22:57:13, 1101.8, 1095
+23:02:16, 1103.3, 1096
+23:07:18, 1105.2, 1098
+23:12:21, 1102.5, 1098
+23:17:24, 1103.8, 1100
+23:22:28, 1100.6, 1100
+23:27:31, 1105.2, 1100
+23:30:46, 1079.4, 1068
+23:35:49, 1096.5, 1074
+23:40:51, 1070.1, 1075
+23:45:54, 1090.1, 1074
+23:50:57, 1088.5, 1080
+23:55:59, 1077.1, 1076
+00:01:05, 998.88, 1037
+00:06:12, 1073.2, 1076
+00:11:17, 1092.3, 1078
+00:16:20, 1075, 1073
+00:21:23, 1095.1, 1071
+00:26:25, 1083.9, 1069
+00:31:28, 1082.9, 1071
+00:36:30, 1083.6, 1073
+00:41:33, 1081.8, 1067
+00:46:36, 1084.7, 1066
+00:51:39, 1087.1, 1068
+00:56:41, 1083.2, 1066
+00:59:13, 1057.8, 1053
+01:04:15, 1076.4, 1062
+01:09:18, 1082.5, 1064
+01:14:21, 1080.3, 1063
+01:19:23, 1069.3, 1044
+01:24:26, 1080.9, 1067
+01:29:29, 1075.5, 1068
+01:34:31, 1061.9, 1058
+01:39:34, 1079.6, 1048
+01:44:36, 1079.6, 1069
+01:49:39, 1077.9, 1056
+01:54:42, 1083.5, 1060
+01:59:44, 1056.3, 1045
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+02:09:50, 1076.5, 1059
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+02:30:00, 1088, 1060
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+03:27:43, 1076.1, 1060
+03:32:46, 1052.1, 1046
+03:37:49, 1069.5, 1050
+03:42:51, 1070.1, 1060
+03:47:54, 1052, 1047
+03:52:56, 1056.3, 1056
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+04:03:02, 1059.7, 1052
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+04:28:15, 1062.5, 1046
+04:33:18, 1058.3, 1050
+04:38:20, 1055, 1052
+04:43:24, 1060.3, 1050
+04:48:26, 1061.3, 1048
+04:53:29, 1058, 1048
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+05:15:28, 1067.6, 1056
+05:20:30, 1059.2, 1053
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+05:35:38, 1064.2, 1050
+05:40:41, 1044.2, 1054
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+05:50:46, 1053.1, 1050
+05:55:49, 1052, 1050
+06:00:51, 1057.1, 1043
+06:05:54, 1046.9, 1049
+06:10:57, 1059.8, 1049
+06:15:59, 1041.2, 1037
+06:21:02, 1063.3, 1047
+06:26:05, 1043.5, 1052
+06:31:07, 1050.7, 1049
+06:36:10, 1042.9, 1045
+06:41:13, 1053.2, 1052
+06:46:15, 1044.1, 1053
+06:51:18, 1065.9, 1050
+06:56:21, 1052.1, 1048

pxiii_bec/macros/luts/beampos/beampos_17071807.csv

@@ -0,0 +1,5 @@
+Beam size: 25 x 20, Energy: 13001 eV, Zoom: 1000.0
+Time,Scin_x,Scin_y,BPM_x,BPM_y
+18:07:53, 1025, 952.3
+18:08:55, 1011.2, 954.6
+18:09:58, 1016, 955.2

pxiii_bec/macros/luts/beampos/beampos_17071810.csv

@@ -0,0 +1,3 @@
+Beam size: 25 x 20, Energy: 13001 eV, Zoom: 1000.0
+Time,Scin_x,Scin_y,BPM_x,BPM_y
+18:11:14, 1012.7, 953.6

pxiii_bec/macros/luts/beampos/beampos_17071813.csv

@@ -0,0 +1,103 @@
+Beam size: 25 x 20, Energy: 13001 eV, Zoom: 1000.0
+Time,Scin_x,Scin_y
+18:13:58, 1018.8, 960.2
+18:24:01, 1006.3, 963.2
+18:34:04, 1013.1, 964.3
+18:44:07, 1022.6, 965.6
+18:54:09, 1001.1, 969.9
+19:04:13, 997.26, 972.5
+19:14:16, 1006, 970.8
+19:24:18, 1018, 974.5
+19:34:21, 1019.5, 973.1
+19:44:24, 1017, 973.4
+19:54:27, 1005.8, 974.2
+20:04:30, 999.66, 976.6
+20:14:33, 1011.8, 978.8
+20:24:36, 1005.6, 977.5
+20:34:39, 1021.6, 982.2
+20:44:41, 1013.7, 982.3
+20:54:44, 1017.9, 986.4
+21:04:47, 1010.5, 985.2
+21:14:50, 996.42, 988.3
+21:24:53, 1000.6, 991.7
+21:34:56, 1011.8, 997.8
+21:44:59, 1002.1, 997.9
+21:55:02, 1007, 997.2
+22:05:05, 1000.8, 1004
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pxiii_bec/macros/luts/beampos/beampos_18071203.csv

@@ -0,0 +1,73 @@
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pxiii_bec/macros/luts/beampos/beampos_18071203_clean.csv

@@ -0,0 +1,73 @@
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pxiii_bec/macros/luts/beampos/beampos_19072001.csv

@@ -0,0 +1,15 @@
+Beam size: 25 x 20, Energy: 13001 eV, Zoom: 1000.0
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pxiii_bec/macros/luts/beampos/beampos_19072104.csv

@@ -0,0 +1,8 @@
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pxiii_bec/macros/luts/beampos/beampos_19072256.csv

@@ -0,0 +1,9 @@
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pxiii_bec/macros/luts/beampos/beampos_19072330.csv

@@ -0,0 +1,20 @@
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pxiii_bec/macros/luts/beampos/beampos_20070058.csv

@@ -0,0 +1,26 @@
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pxiii_bec/macros/luts/beampos/beampos_20070256.csv

@@ -0,0 +1,27 @@
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pxiii_bec/macros/luts/beampos/beampos_20070459.csv

@@ -0,0 +1,26 @@
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