x01dcandClaude Sonnet 5 c37bfc76d6
CI for csaxs_bec / test (push) Successful in 2m0s
fix(omny): set cam200-203/cam_xeye readoutPriority to on_request, fixes scan crash
omny.tomo_scan_projection(1) -> omny_fermat_scan crashed with ValueError: 'cam200'
is not in list once a scan actually did a readback-tracked osamroy rotation (the
first time this branch's testing got that far).

Root cause, traced through bec_server + bec_ipython_client core code: omny_fermat_scan's
add_scan_report_instruction_readback(devices=["osamroy"]) registers osamroy as requiring
a response; post_scan()'s complete_all_devices() then batches every enabled+claimable-owned
device into one end-of-scan instruction, including cam200 (readoutPriority: async +
enabled: true default to ownership_mode: "claimable", auto-acquired for any scan unless
readoutPriority is "on_request"). The batched instruction's response flag isn't scoped
per-device, so the server publishes a device-request-status message for cam200 too, under
the same RID the osamroy-only readback progressbar is listening on -- which then crashes
on an unrecognized device name.

cam200/201/202/203 (and cam_xeye, added last pass) are view-only GUI cameras never
referenced by any scan code (confirmed via repo-wide grep). Changing their readoutPriority
to on_request excludes them from the claimable/owned auto-acquire set entirely, fixing the
crash with a config-only change -- and matches flomni's own convention for this same
category of device (cam_flomni_gripper/cam_flomni_overview are both on_request already).
Live-mode GUI streaming (start_live_mode(), used by the parking/samplestage camera views)
is unaffected since it's a dedicated background thread, not driven by readout-priority
scheduling -- flomni's own cameras already prove on_request + live-mode works together.

Applied to both simulated_omny.yaml and the real ptycho_omny.yaml per Mirko: this brings
both configs in line with flomni's convention, not just a sim-only workaround.

The underlying bug (instruction-batch-scoped response flag in scan_actions.py:_send(),
plus missing per-device filtering in ReadbackDataHandler/DeviceProgressBar) is a genuine
bec-core issue, not omny-specific -- flomni's own cam_xeye has the same latent exposure,
untouched here since it's out of this branch's scope. Recorded in omny/AI_docs/OPEN_ISSUES.md
and reported upstream separately.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01QLrD7sVYGLAzsQjLVJpCgt
2026-09-02 03:46:52 +02:00
2026-08-19 12:03:18 +02:00
2025-05-24 11:37:51 +02:00

cSAXS BEC

cSAXS specific plugins and configs for BEC This document guides you through the procedure to spin up BEC at the beamline for a new experiment (e-account). You might want to run cSAXS copy scripts before in case you want to have the former data structure to be preserved.

Overview

  • Clone cSAXS BEC repository into e-account (e.g. into ~/Data10/software/.)
  • Start Epics iocs
  • Start BEC, BEC server and load/modify the device config with relevant hardware
  • BEC commands

Clone cSAXS BEC repository

Clone the current cSAXS BEC repository from GIT into the new e-account. Create directory

mkdir ~/Data10/software
cd ~/Data10/software

Clone repository

git clone https://gitlab.psi.ch/bec/csaxs_bec.git

Start epics iocs

You can start up the iocs while the ./setup_bec.sh script is running. Be aware though that the scripts requires you to interact with it.

DelayGenerator

Open a new tab in a terminal in comp1/comp2 or cons1 and follow the commands below:

ssh gac-x12sa@localhost
cd ~/delaygen
iocsh -7.0.6 startup.script

Be aware -7.0.6 is referring to the current epics version and might change in future (SLS 2.0). To start the epics panel (only if needed), run in a new shell

caqtdm -noMsg -macro P=delaygen:,R=DG1: srsDG645.ui

More notes on usages and cabelling of DDGs. Currently 3 generators are used:

  • DDG1 for detectors (EXT Enable from SGalil stages, T0 to DDG2, AB for eiger, CD for Falcon, EF for Pilatus_2)
  • DDG2 for mcs card (ext. enable from DDG1, AB to mcs card)
  • DDG3 for fast shutter and mcs enable (AB short pulse to enable MCS (needed!!), CD to keep FSH open )

Eiger

Open a new tab in a terminal in comp1/comp2 or cons1 and follow the commands below:

ssh gac-x12sa@localhost
cd ~/Software/Eiger/
./launch_ioc

A live view of status and images for std_daq can be found here xbl-daq-29:5000.

Pilatus_2

First, start the cam server. Connect to the computer and follow the instructions printed after connecting:

ssh det@x12sa-pd-2 (Pilatus2)

The cam server will open, wait until you see **. Nex step, open a new tab in a terminal in comp1/comp2 or cons1 and follow the commands below:

ssh gac-x12sa@localhost
cd ~/Software/Pilatus300K/
./launch_epics

FalconX1

Open a new tab in a terminal in comp1/comp2 or cons1 (logged in as the current e-account) and follow the commands:

ssh x12sa-cons-01
cd /ioc/X12SA-PC-FALCONX1/
iocsh -7.0.6 startup.script

Be aware -7.0.6 is referring to the current epics version and might change in future (SLS 2.0)

Start BEC, BEC server and load device config

Step 1 needs to have finished for continuing with these steps. What remains now is to start the bec server. Connect to pc15543 and open a new terminal to run:

cd ~/Data10/software
source bec_venv/bin/activate
bec-server start
tmux attach -t bec

Open another teminal on pc15543 and start BEC:

cd ~/Data10/software
source bec_venv/bin/activate
bec

Note: In case there is a warning after starting BEC that it was not able to import scilog, you will have to pip install scilog in the bec_venv to be able to send printouts to scilog from the command line. Within a new terminal:

cd ~/Data10/software
source bec_venv/bin/activate
pip install scilog

Device config from csaxs-bec plugins

bec.config.update_session_with_file('/sls/X12SA/data/e20639/Data10/software/csaxs-bec/bec_plugins/configs/bec_device_config_sastt.yaml')
bec.config.save_current_session('~/Data10/software/current_config.yaml')

The second command is helpful if you adjust limits of motors, which will then be stored in the config and loaded if a reload of the configuration is needed.

BEC commands

A number of commands that are useful:

To move devices that are added in the config:

umv(dev.samx, 0) #absolute
umvr(dev.samx, 0) #relative
dev.samx.wm #print motor position and limits
dev.samx.limits = [low_limit, high_limit] # To set limits, note, same lower and higher limit, e.g. [0, 0] means no limits!!

Scans:

scans.acquire(exp_time = 0.5, frames_per_trigger=10, readout_time=3e-3) # equivalent to a loopscan 30 0.5
scans.line_scan(dev.samx, -1, 1, steps=20, exp_time=0.5, readout_time=3e-3, relative=True) # optional, add frames_per_trigger =10 for burst acquisition at each step
#Scan 2 motors in a step scan at the same time
scans.line_scan(dev.samx, -1, 1, dev.samy, -1, 1, steps=20, exp_time=0.5, readout_time =3e-3, relative=True) # step scan with 20 steps, again frames_per_trigger can be added for burst at each point
scans.sgalil_grid(start_y = , end_y = , interval_y = , start_x=, end_x=, interval_x =, exp_time=0.5, readout_time=3e-3, relative=True)
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