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Several tomo_scan()/tomo_alignment_scan()/find_rotation_center() tests started failing (CI) after recent commits on this branch introduced new input()-backed confirmation/sample-name prompts, an alignment_scan_progress GUI proxy, and tomo_queue_execute()'s interactive=False kwarg -- none of which the existing test fixtures or assertions were updated for. Mock/bypass the new prompts and GUI calls, add the missing _alignment_scan_progress_proxy to the bare-object test fixture, and update two assertions (tomo_queue interactive kwarg, account-less sample registration) to match the intended new behavior.
Getting Started with Testing using pytest
BEC is using the pytest framework. It can be installed via
pip install pytest
in your python environment.
We note that pytest is part of the optional-dependencies [dev] of the plugin package.
Introduction
Tests in this package should be stored in the tests directory.
We suggest to sort tests of different submodules, i.e. scans or devices in the respective folder structure, and to folow a naming convention of <test_module_name.py>.
It is mandatory for test files to begin with test_ for pytest to discover them.
To run all tests, navigate to the directory of the plugin from the command line, and run the command
pytest -v --random-order ./tests
Note, the python environment needs to be active.
The additional arg -v allows pytest to run in verbose mode which provides more detailed information about the tests being run.
The argument --random-order instructs pytest to run the tests in random order, which is the default in the CI pipelines.
Test examples
Writing tests can be quite specific for the given function. We recommend writing tests as isolated as possible, i.e. try to test single functions instead of full classes. A very useful class to enable isolated testing is MagicMock. In addition, we also recommend to take a look at the How-to guides from pytest.