.gitea/workflows/ci.yml

@@ -47,25 +47,13 @@ jobs:
           python-version: "${{ inputs.PYTHON_VERSION || '3.11' }}"
 
       - name: Checkout BEC Core
-        uses: actions/checkout@v4
-        with:
-          repository: bec/bec
-          ref: "${{ inputs.BEC_CORE_BRANCH || 'main' }}"
-          path: ./bec
+        run: git clone --depth 1 --branch "${{ inputs.BEC_CORE_BRANCH || 'main' }}" https://github.com/bec-project/bec.git ./bec
 
       - name: Checkout Ophyd Devices
-        uses: actions/checkout@v4
-        with:
-          repository: bec/ophyd_devices
-          ref: "${{ inputs.OPHYD_DEVICES_BRANCH || 'main' }}"
-          path: ./ophyd_devices
+        run: git clone --depth 1 --branch "${{ inputs.OPHYD_DEVICES_BRANCH || 'main' }}" https://github.com/bec-project/ophyd_devices.git ./ophyd_devices
 
       - name: Checkout BEC Widgets
-        uses: actions/checkout@v4
-        with:
-          repository: bec/bec_widgets
-          ref: "${{ inputs.BEC_WIDGETS_BRANCH || 'main' }}"
-          path: ./bec_widgets
+        run: git clone --depth 1 --branch "${{ inputs.BEC_WIDGETS_BRANCH || 'main' }}" https://github.com/bec-project/bec_widgets.git ./bec_widgets
 
       - name: Checkout BEC Plugin Repository
         uses: actions/checkout@v4

csaxs_bec/bec_ipython_client/plugins/flomni/flomni.py

@@ -14,6 +14,8 @@ from typeguard import typechecked
 from csaxs_bec.bec_ipython_client.plugins.cSAXS import cSAXSBeamlineChecks
 from csaxs_bec.bec_ipython_client.plugins.flomni.flomni_optics_mixin import FlomniOpticsMixin
 from csaxs_bec.bec_ipython_client.plugins.flomni.x_ray_eye_align import XrayEyeAlign
+from csaxs_bec.bec_ipython_client.plugins.flomni.gui_tools import flomniGuiTools
+from csaxs_bec.bec_ipython_client.plugins.omny.omny_general_tools import OMNYTools
 
 logger = bec_logger.logger
 
@@ -24,27 +26,57 @@ if builtins.__dict__.get("bec") is not None:
     umvr = builtins.__dict__.get("umvr")
 
 
+class FlomniToolsError(Exception):
+    pass
+
 class FlomniInitError(Exception):
     pass
 
-
 class FlomniError(Exception):
     pass
 
+class FlomniTools:
+    def yesno(self, message: str, default="none", autoconfirm=0) -> bool:
+        if autoconfirm and default == "y":
+            self.printgreen(message + " Automatically confirming default: yes")
+            return True
+        elif autoconfirm and default == "n":
+            self.printgreen(message + " Automatically confirming default: no")
+            return False
+        if default == "y":
+            message_ending = " [Y]/n? "
+        elif default == "n":
+            message_ending = " y/[N]? "
+        else:
+            message_ending = " y/n? "
+        while True:
+            user_input = input(self.OKBLUE + message + message_ending + self.ENDC)
+            if (
+                user_input == "Y" or user_input == "y" or user_input == "yes" or user_input == "Yes"
+            ) or (default == "y" and user_input == ""):
+                return True
+            if (
+                user_input == "N" or user_input == "n" or user_input == "no" or user_input == "No"
+            ) or (default == "n" and user_input == ""):
+                return False
+            else:
+                print("Please expicitely confirm y or n.")
+
+
+
+
 
 class FlomniInitStagesMixin:
 
     def flomni_init_stages(self):
 
-        user_input = input("Starting initialization of flOMNI stages. OK? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("Starting initialization of flOMNI stages. OK?"):
             print("staring...")
         else:
             return
 
         if self.check_all_axes_of_fomni_referenced():
-            user_input = input("Continue anyways? [y/n]")
-            if user_input == "y":
+            if self.OMNYTools.yesno("All axes are referenced. Continue anyways?"):
                 print("ok then...")
             else:
                 return
@@ -74,10 +106,8 @@ class FlomniInitStagesMixin:
         dev.feyex.limits = [-30, -1]
         print("done")
 
-        user_input = input(
-            "Init of foptz. Can the stage move to the upstream limit without collision? [y/n]"
-        )
-        if user_input == "y":
+
+        if self.OMNYTools.yesno("Init of foptz. Can the stage move to the upstream limit without collision?"):
             print("good then")
         else:
             return
@@ -131,10 +161,7 @@ class FlomniInitStagesMixin:
         dev.fsamy.limits = [2, 3.1]
         print("done")
 
-        user_input = input(
-            "Init of tracking stages. Did you remove the outer laser flight tubes? [y/n]"
-        )
-        if user_input == "y":
+        if self.OMNYTools.yesno("Init of tracking stages. Did you remove the outer laser flight tubes?"):
             print("good then")
         else:
             print("Stopping.")
@@ -150,8 +177,7 @@ class FlomniInitStagesMixin:
         dev.ftrackz.limits = [4.5, 5.5]
         print("done")
 
-        user_input = input("Init of sample stage. Is the piezo at about 0 deg? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("Init of sample stage. Is the piezo at about 0 deg?"):
             print("good then")
         else:
             print("Stopping.")
@@ -168,11 +194,7 @@ class FlomniInitStagesMixin:
         print("done")
 
         print("Initializing UPR stage.")
-        user_input = input(
-            "To ensure that the end switches work, please check that they are currently not pushed."
-            " Is everything okay? [y/n]"
-        )
-        if user_input == "y":
+        if self.OMNYTools.yesno("To ensure that the end switches work, please check that they are currently not pushed. Is everything okay?"):
             print("good then")
         else:
             print("Stopping.")
@@ -193,8 +215,7 @@ class FlomniInitStagesMixin:
                 time.sleep(1)
                 continue
             break
-        user_input = input("Shall I start the index search? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("Shall I start the index search?"):
             print("good then. Starting index search.")
         else:
             print("Stopping.")
@@ -213,11 +234,7 @@ class FlomniInitStagesMixin:
         dev.fsamroy.limits = [-5, 365]
         print("done")
 
-        user_input = input(
-            "Init of foptx. Can the stage move to the positive limit without collision? Attention:"
-            " tracker flight tube! [y/n]"
-        )
-        if user_input == "y":
+        if self.OMNYTools.yesno("Init of foptx. Can the stage move to the positive limit without collision? Attention: tracker flight tube!"):
             print("good then")
         else:
             print("Stopping.")
@@ -241,8 +258,7 @@ class FlomniInitStagesMixin:
                 continue
             break
 
-        user_input = input("Start limit switch search of fopty? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("Start limit switch search of fopty?"):
             print("good then")
         else:
             print("Stopping.")
@@ -275,8 +291,7 @@ class FlomniInitStagesMixin:
             return False
 
     def set_limits(self):
-        user_input = input("Set default limits for flOMNI? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("Set default limits for flOMNI?"):
             print("setting limits...")
         else:
             print("Stopping.")
@@ -303,8 +318,7 @@ class FlomniInitStagesMixin:
         dev.ftrackz.limits = [4.5, 5.5]
 
     def _align_setup(self):
-        user_input = input("Start moving stages to default initial positions? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("Start moving stages to default initial positions?", "y"):
             print("Start moving stages...")
         else:
             print("Stopping.")
@@ -397,7 +411,8 @@ class FlomniSampleTransferMixin:
             raise FlomniError("Ftray is not at the 'IN' position. Aborting.")
 
     def ftransfer_flomni_stage_in(self):
-        sample_in_position = bool(float(dev.flomni_samples.sample_placed.sample0.get()))
+        sample_in_position = dev.flomni_samples.is_sample_slot_used(0)
+        #bool(float(dev.flomni_samples.sample_placed.sample0.get()))
         if not sample_in_position:
             raise FlomniError("There is no sample in the sample stage. Aborting.")
         self.reset_correction()
@@ -410,6 +425,8 @@ class FlomniSampleTransferMixin:
         umv(dev.fsamx, fsamx_in)
         dev.fsamx.limits = [fsamx_in - 0.4, fsamx_in + 0.4]
 
+        self.flomnigui_idle()
+
     def laser_tracker_show_all(self):
         dev.rtx.controller.laser_tracker_show_all()
 
@@ -449,6 +466,10 @@ class FlomniSampleTransferMixin:
         self.device_manager.devices.fsamx.controller.lights_on()
 
     def ftransfer_flomni_stage_out(self):
+
+        self.flomnigui_show_cameras()
+
+
         target_pos = -162
         if np.isclose(dev.fsamx.readback.get(), target_pos, 0.01):
             return
@@ -496,22 +517,20 @@ class FlomniSampleTransferMixin:
         self.check_tray_in()
         self.check_sensor_connected()
 
-        sample_in_gripper = bool(float(dev.flomni_samples.sample_in_gripper.get()))
+        sample_in_gripper = dev.flomni_samples.is_sample_in_gripper()
         if sample_in_gripper:
             raise FlomniError(
                 "The gripper does carry a sample. Cannot proceed getting another sample."
             )
 
-        sample_signal = getattr(dev.flomni_samples.sample_placed, f"sample{position}")
-        sample_in_position = bool(float(sample_signal.get()))
+        sample_in_position = dev.flomni_samples.is_sample_slot_used(position)
         if not sample_in_position:
             raise FlomniError(f"The planned pick position [{position}] does not have a sample.")
 
-        user_input = input(
-            "Please confirm that there is currently no sample in the gripper. It would be dropped!"
-            " [y/n]"
-        )
-        if user_input == "y":
+        self.flomnigui_show_cameras()
+
+
+        if self.OMNYTools.yesno("Please confirm that there is currently no sample in the gripper. It would be dropped!", "y"):
             print("good then")
         else:
             print("Stopping.")
@@ -555,12 +574,12 @@ class FlomniSampleTransferMixin:
         self.check_tray_in()
         self.check_sensor_connected()
 
-        sample_in_gripper = bool(float(dev.flomni_samples.sample_in_gripper.get()))
+        sample_in_gripper = dev.flomni_samples.is_sample_in_gripper()
+        #bool(float(dev.flomni_samples.sample_in_gripper.get()))
         if not sample_in_gripper:
             raise FlomniError("The gripper does not carry a sample.")
 
-        sample_signal = getattr(dev.flomni_samples.sample_placed, f"sample{position}")
-        sample_in_position = bool(float(sample_signal.get()))
+        sample_in_position = dev.flomni_samples.is_sample_slot_used(position)
         if sample_in_position:
             raise FlomniError(f"The planned put position [{position}] already has a sample.")
 
@@ -593,8 +612,9 @@ class FlomniSampleTransferMixin:
         self.flomni_modify_storage_non_interactive(100, 0, "-")
         self.flomni_modify_storage_non_interactive(position, 1, sample_name)
 
-        # TODO: flomni_stage_in if position == 0
-        # bec.queue.next_dataset_number += 1
+        if position == 0:
+            self.ftransfer_flomni_stage_in()
+            bec.queue.next_dataset_number += 1
 
     def sample_get_name(self, position: int = 0) -> str:
         """
@@ -605,36 +625,51 @@ class FlomniSampleTransferMixin:
 
     def ftransfer_sample_change(self, new_sample_position: int):
         self.check_tray_in()
-        sample_in_gripper = dev.flomni_samples.sample_in_gripper.get()
+#        sample_in_gripper = dev.flomni_samples.sample_in_gripper.get()
+        sample_in_gripper = dev.flomni_samples.is_sample_in_gripper()
         if sample_in_gripper:
             raise FlomniError("There is already a sample in the gripper. Aborting.")
 
         self.check_position_is_valid(new_sample_position)
 
-        sample_placed = getattr(
-            dev.flomni_samples.sample_placed, f"sample{new_sample_position}"
-        ).get()
+        if new_sample_position == 0:
+            raise FlomniError("The new sample to place cannot be the sample in the sample stage. Aborting.")
+
+#        sample_placed = getattr(
+#            dev.flomni_samples.sample_placed, f"sample{new_sample_position}"
+#        ).get()
+        sample_placed = dev.flomni_samples.is_sample_slot_used(new_sample_position)
         if not sample_placed:
             raise FlomniError(
                 f"There is currently no sample in position [{new_sample_position}]. Aborting."
             )
 
-        sample_in_sample_stage = dev.flomni_samples.sample_placed.sample0.get()
+#        sample_in_sample_stage = dev.flomni_samples.sample_placed.sample0.get()
+        sample_in_sample_stage = dev.flomni_samples.is_sample_slot_used(0)
         if sample_in_sample_stage:
             # find a new home for the sample...
             empty_slots = []
-            for name, val in dev.flomni_samples.read().items():
-                if "flomni_samples_sample_placed_sample" not in name:
-                    continue
-                if val.get("value") == 0:
-                    empty_slots.append(int(name.split("flomni_samples_sample_placed_sample")[1]))
+#            for name, val in dev.flomni_samples.read().items():
+#                if "flomni_samples_sample_placed_sample" not in name:
+#                    continue
+#                if val.get("value") == 0:
+#                    empty_slots.append(int(name.split("flomni_samples_sample_placed_sample")[1]))
+            for j in range(1,20):
+                if not dev.flomni_samples.is_sample_slot_used(j):
+                    empty_slots.append(j)
             if not empty_slots:
                 raise FlomniError("There are no empty slots available. Aborting.")
 
             print(f"The following slots are empty: {empty_slots}.")
 
             while True:
-                user_input = input(f"Where shall I put the sample? Default: [{empty_slots[0]}]")
+                user_input = input(f"Where shall I put the sample? Default: [{empty_slots[0]}] ")
+
+                if user_input.strip() == "":
+                    # No entry: use default
+                    user_input = empty_slots[0]
+                    break
+
                 try:
                     user_input = int(user_input)
                     if user_input not in empty_slots:
@@ -700,20 +735,20 @@ class FlomniSampleTransferMixin:
         if confirm != -1:
             return
 
-        user_input = input("All OK? Continue? [y/n]")
-        if user_input == "y":
+        if self.OMNYTools.yesno("All OK? Continue?", "y"):
             print("good then")
             dev.ftransy.controller.socket_put_confirmed("confirm=1")
         else:
             print("Stopping.")
-            return
+            exit
 
     def ftransfer_gripper_is_open(self) -> bool:
         status = bool(float(dev.ftransy.controller.socket_put_and_receive("MG @OUT[9]").strip()))
         return status
 
     def ftransfer_gripper_open(self):
-        sample_in_gripper = dev.flomni_samples.sample_in_gripper.get()
+        sample_in_gripper = dev.flomni_samples.is_sample_in_gripper()
+        #dev.flomni_samples.sample_in_gripper.get()
         if sample_in_gripper:
             raise FlomniError(
                 "Cannot open gripper. There is still a sample in the gripper! Aborting."
@@ -733,11 +768,8 @@ class FlomniSampleTransferMixin:
 
         fsamx_pos = dev.fsamx.readback.get()
         if position == 0 and fsamx_pos > -160:
-            user_input = input(
-                "May the flomni stage be moved out for the sample change? Feedback will be disabled"
-                " and alignment will be lost! [y/n]"
-            )
-            if user_input == "y":
+
+            if self.OMNYTools.yesno("May the flomni stage be moved out for the sample change? Feedback will be disabled and alignment will be lost!", "y"):
                 print("good then")
                 self.ftransfer_flomni_stage_out()
             else:
@@ -1106,6 +1138,7 @@ class Flomni(
     FlomniAlignmentMixin,
     FlomniOpticsMixin,
     cSAXSBeamlineChecks,
+    flomniGuiTools
 ):
     def __init__(self, client):
         super().__init__()
@@ -1128,13 +1161,20 @@ class Flomni(
         self.corr_pos_y_2 = []
         self.corr_angle_y_2 = []
         self.progress = {}
+        self.progress["subtomo"] = 0
+        self.progress["subtomo_projection"] = 0
+        self.progress["subtomo_total_projections"] = 1
+        self.progress["projection"] = 0
+        self.progress["total_projections"] = 1
+        self.progress["angle"] = 0
+        self.progress["tomo_type"] = 0
+        self.OMNYTools = OMNYTools(self.client)
         self.align = XrayEyeAlign(self.client, self)
+        self.set_client(client)
 
     def start_x_ray_eye_alignment(self):
-        user_input = input(
-            "Starting Xrayeye alignment. Deleting any potential existing alignment for this sample. [Y/n]"
-        )
-        if user_input == "y" or user_input == "":
+
+        if self.OMNYTools.yesno("Starting Xrayeye alignment. Deleting any potential existing alignment for this sample.", "y"):
             self.align = XrayEyeAlign(self.client, self)
             try:
                 self.align.align()
@@ -1570,6 +1610,9 @@ class Flomni(
 
     def tomo_scan(self, subtomo_start=1, start_angle=None, projection_number=None):
         """start a tomo scan"""
+
+        self.flomnigui_show_progress()
+
         bec = builtins.__dict__.get("bec")
         scans = builtins.__dict__.get("scans")
         self._current_special_angles = self.special_angles.copy()
@@ -1706,6 +1749,7 @@ class Flomni(
         print(f"Angle: ........................... {self.progress['angle']}")
         print(f"Current subtomo: ................. {self.progress['subtomo']}")
         print(f"Current projection within subtomo: {self.progress['subtomo_projection']}\x1b[0m")
+        self._flomnigui_update_progress()
 
     def add_sample_database(
         self, samplename, date, eaccount, scan_number, setup, sample_additional_info, user
@@ -1795,7 +1839,7 @@ class Flomni(
 
     def _write_tomo_scan_number(self, scan_number: int, angle: float, subtomo_number: int) -> None:
         tomo_scan_numbers_file = os.path.expanduser(
-            "~/Data10/specES1/dat-files/tomography_scannumbers.txt"
+            "~/tomography_scannumbers.txt"
         )
         with open(tomo_scan_numbers_file, "a+") as out_file:
             # pylint: disable=undefined-variable
@@ -1894,8 +1938,8 @@ class Flomni(
                 )
         print(f"\nSample name: {self.sample_name}\n")
 
-        user_input = input("Are these parameters correctly set for your scan? [Y/n]")
-        if user_input == "y" or user_input == "":
+
+        if self.OMNYTools.yesno("Are these parameters correctly set for your scan?", "y"):
             print("... excellent!")
         else:
             self.tomo_countingtime = self._get_val("<ctime> s", self.tomo_countingtime, float)

csaxs_bec/bec_ipython_client/plugins/flomni/gui_tools.py

@@ -0,0 +1,152 @@
+import builtins
+
+from bec_widgets.cli.client import BECDockArea
+
+# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    umv = builtins.__dict__.get("umv")
+    umvr = builtins.__dict__.get("umvr")
+
+
+class flomniGuiToolsError(Exception):
+    pass
+
+
+class flomniGuiTools:
+
+    def __init__(self):
+        self.gui_window = None
+        self.camera_gripper_image = None
+        self.camera_overview_image = None
+        self.progressbar = None
+        self.text_box = None
+        self.idle_text_box = None
+
+    def set_client(self, client):
+        self.client = client
+        self.gui = self.client.gui
+
+    def flomnigui_show_gui(self):
+        if "flomni" in self.gui.windows:
+            self.gui.flomni.show()
+        else:
+            self.gui.new("flomni")
+
+    def flomnigui_stop_gui(self):
+        self.gui.flomni.hide()
+
+    def flomnigui_show_cameras(self):
+        self.flomnigui_show_gui()
+        if self.camera_gripper_image is None or self.camera_overview_image is None:
+            self.flomnigui_remove_all_docks()
+            self.camera_gripper_image = self.gui.flomni.new("camera_gripper").new("Image")
+            if self._flomnicam_check_device_exists(dev.cam_flomni_gripper):
+                self.camera_gripper_image.image(("cam_flomni_gripper","preview"))
+                self.camera_gripper_image.lock_aspect_ratio = True
+                self.camera_gripper_image.enable_fps_monitor = True
+                self.camera_gripper_image.enable_toolbar = False
+                self.camera_gripper_image.outer_axes = False
+                self.camera_gripper_image.inner_axes = False
+                dev.cam_flomni_gripper.start_live_mode()
+            else:
+                print("Cannot open camera_gripper. Device does not exist.")
+            self.camera_overview_image = self.gui.flomni.new("camera_overview").new("Image")
+            if self._flomnicam_check_device_exists(dev.cam_flomni_overview):
+                self.camera_overview_image.image(("cam_flomni_overview","preview"))
+                self.camera_overview_image.lock_aspect_ratio = True
+                self.camera_overview_image.enable_fps_monitor = True
+                self.camera_overview_image.enable_toolbar = False
+                self.camera_overview_image.outer_axes = False
+                self.camera_overview_image.inner_axes = False
+                dev.cam_flomni_overview.start_live_mode()
+            else:
+                print("Cannot open camera_overview. Device does not exist.")
+
+    def flomnigui_remove_all_docks(self):
+        dev.cam_flomni_overview.stop_live_mode()
+        dev.cam_flomni_gripper.stop_live_mode()
+        self.gui.flomni.delete_all()
+        self.camera_gripper_image = None
+        self.camera_overview_image = None
+        self.progressbar = None
+        self.text_box = None
+        self.idle_text_box = None
+
+    def flomnigui_idle(self):
+        self.flomnigui_show_gui()
+        if self.idle_text_box is None:
+            self.flomnigui_remove_all_docks()
+            self.idle_text_box = self.gui.flomni.new("idle_textbox").new("TextBox")
+        text = (
+            "<pre>"                                       
+            + " ,---.,--. ,-----. ,--.   ,--.,--.  ,--.,--. \n"
+            + "/  .-'|  |'  .-.  '|   `.'   ||  ,'.|  ||  | \n"
+            + "|  `-,|  ||  | |  ||  |'.'|  ||  |' '  ||  | \n"
+            + "|  .-'|  |'  '-'  '|  |   |  ||  | `   ||  | \n"
+            + "`--'  `--' `-----' `--'   `--'`--'  `--'`--' \n"
+            + "</pre>"                                        
+        )
+        self.idle_text_box.set_html_text(text)
+
+    def _flomnicam_check_device_exists(self, device):
+        try:
+            device
+        except:
+            return False
+        else:
+            return True
+
+    def flomnigui_show_progress(self):
+        self.flomnigui_show_gui()
+        if self.progressbar is None:
+            self.flomnigui_remove_all_docks()
+            # Add a new dock with a RingProgressBar widget
+            self.progressbar = self.gui.flomni.new("progressbar").new("RingProgressBar")
+            # Customize the size of the progress ring
+            self.progressbar.set_line_widths(20)
+            # Disable automatic updates and manually set the self.progressbar value
+            self.progressbar.enable_auto_updates(False)
+            # Set precision for the self.progressbar display
+            self.progressbar.set_precision(1)  # Display self.progressbar with one decimal places
+            # Setting multiple rigns with different values
+            self.progressbar.set_number_of_bars(3)
+            self.progressbar.rings[0].set_update("manual")
+            self.progressbar.rings[1].set_update("manual")
+            self.progressbar.rings[2].set_update("scan")
+            # Set the values of the rings to 50, 75, and 25 from outer to inner ring
+            # self.progressbar.set_value([50, 75])
+            # Add a new dock with a TextBox widget
+            self.text_box = self.gui.flomni.new(name="progress_text").new("TextBox")
+
+        self._flomnigui_update_progress()
+
+    def _flomnigui_update_progress(self):
+        if self.progressbar is not None:
+            progress = self.progress["projection"] / self.progress["total_projections"] * 100
+            subtomo_progress = (
+                self.progress["subtomo_projection"]
+                / self.progress["subtomo_total_projections"]
+                * 100
+            )
+            self.progressbar.set_value([progress, subtomo_progress, 0])
+
+            text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
+            self.text_box.set_plain_text(text)
+
+
+
+if __name__ == "__main__":
+    from bec_lib.client import BECClient 
+    from bec_widgets.cli.client_utils import BECGuiClient
+    client = BECClient()
+    client.start()
+    client.gui = BECGuiClient()
+
+
+    
+    flomni_gui = flomniGuiTools(client)
+    flomni_gui.flomnigui_show_gui()
+    flomni_gui.flomnigui_show_progress()

csaxs_bec/device_configs/flomni_config.yaml

@@ -213,6 +213,8 @@ ftransy:
   onFailure: buffer
   readOnly: false
   readoutPriority: baseline
+  userParameter:
+    sensor_voltage: -2.4
 ftransz:
   description: Sample transer Z
   deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
@@ -333,8 +335,8 @@ rtx:
   readOnly: false
   readoutPriority: on_request
   userParameter:
-    low_signal: 11000
-    min_signal: 10000
+    low_signal: 10000
+    min_signal: 9000
     rt_pid_voltage: -0.06219
 rty:
   description: flomni rt
@@ -362,3 +364,29 @@ rtz:
   onFailure: buffer
   readOnly: false
   readoutPriority: on_request
+
+
+
+cam_flomni_gripper:
+  description: Camera sample changer
+  deviceClass: csaxs_bec.devices.omny.webcam_viewer.WebcamViewer
+  deviceConfig:
+    url: http://flomnicamserver:5000/video_high
+    num_rotation_90: 3
+    transpose: false
+  enabled: true 
+  onFailure: buffer 
+  readOnly: false 
+  readoutPriority: on_request
+
+cam_flomni_overview:
+  description: Camera flomni overview
+  deviceClass: csaxs_bec.devices.omny.webcam_viewer.WebcamViewer
+  deviceConfig:
+    url: http://flomnicamserver:5001/video_high
+    num_rotation_90: 3
+    transpose: false
+  enabled: true 
+  onFailure: buffer 
+  readOnly: false 
+  readoutPriority: on_request

csaxs_bec/devices/omny/flomni_sample_storage.py

@@ -24,24 +24,25 @@ class FlomniSampleStorage(Device):
     SUB_VALUE = "value"
     _default_sub = SUB_VALUE
     sample_placed = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_flomni{i}:GET", {}) for i in range(21)
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_flomni{i}:GET", {"auto_monitor": True}) for i in range(21)
     }
     sample_placed = Dcpt(sample_placed)
 
     sample_names = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_flomni{i}:GET.DESC", {"string": True})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_flomni{i}:GET.DESC", {"string": True, "auto_monitor": True})
         for i in range(21)
     }
     sample_names = Dcpt(sample_names)
 
     sample_in_gripper = Cpt(
-        EpicsSignal, name="sample_in_gripper", read_pv="XOMNY-SAMPLE_DB_flomni100:GET"
+        EpicsSignal, name="sample_in_gripper", read_pv="XOMNY-SAMPLE_DB_flomni100:GET", auto_monitor=True
     )
     sample_in_gripper_name = Cpt(
         EpicsSignal,
         name="sample_in_gripper_name",
         read_pv="XOMNY-SAMPLE_DB_flomni100:GET.DESC",
         string=True,
+        auto_monitor=True
     )
 
     def __init__(self, prefix="", *, name, **kwargs):

csaxs_bec/devices/omny/omny_sample_storage.py

@@ -37,84 +37,86 @@ class OMNYSampleStorage(Device):
     _default_sub = SUB_VALUE
 
     sample_shuttle_A_placed = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_A:{i}", {}) for i in range(1, 7)
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_A:{i}", {"auto_monitor": True}) for i in range(1, 7)
     }
     sample_shuttle_A_placed = Dcpt(sample_shuttle_A_placed)
 
     sample_shuttle_B_placed = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_B:{i}", {}) for i in range(1, 7)
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_B:{i}", {"auto_monitor": True}) for i in range(1, 7)
     }
     sample_shuttle_B_placed = Dcpt(sample_shuttle_B_placed)
 
     sample_shuttle_C_placed = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_C:{i}", {}) for i in range(1, 7)
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_C:{i}", {"auto_monitor": True}) for i in range(1, 7)
     }
     sample_shuttle_C_placed = Dcpt(sample_shuttle_C_placed)
 
     sample_shuttle_C_placed = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_C:{i}", {}) for i in range(1, 7)
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_C:{i}", {"auto_monitor": True}) for i in range(1, 7)
     }
     sample_shuttle_C_placed = Dcpt(sample_shuttle_C_placed)
 
     parking_placed = {
-        f"parking{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_parking:{i}", {}) for i in range(1, 7)
+        f"parking{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_parking:{i}", {"auto_monitor": True}) for i in range(1, 7)
     }
     parking_placed = Dcpt(parking_placed)
 
     sample_placed = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_omny:{i}", {})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_omny:{i}", {"auto_monitor": True})
         for i in [10, 11, 12, 13, 14, 32, 33, 34, 100, 101]
     }
     sample_placed = Dcpt(sample_placed)
 
     sample_shuttle_A_names = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_A:{i}.DESC", {"string": True})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_A:{i}.DESC", {"string": True, "auto_monitor": True})
         for i in range(1, 7)
     }
     sample_shuttle_A_names = Dcpt(sample_shuttle_A_names)
 
     sample_shuttle_B_names = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_B:{i}.DESC", {"string": True})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_B:{i}.DESC", {"string": True, "auto_monitor": True})
         for i in range(1, 7)
     }
     sample_shuttle_B_names = Dcpt(sample_shuttle_B_names)
 
     sample_shuttle_C_names = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_C:{i}.DESC", {"string": True})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_shuttle_C:{i}.DESC", {"string": True, "auto_monitor": True})
         for i in range(1, 7)
     }
     sample_shuttle_C_names = Dcpt(sample_shuttle_C_names)
 
     parking_names = {
-        f"parking{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_parking:{i}.DESC", {"string": True})
+        f"parking{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_parking:{i}.DESC", {"string": True, "auto_monitor": True})
         for i in range(1, 7)
     }
     parking_names = Dcpt(parking_names)
 
     sample_names = {
-        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_omny:{i}.DESC", {"string": True})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_omny:{i}.DESC", {"string": True, "auto_monitor": True})
         for i in [10, 11, 12, 13, 14, 32, 33, 34, 100, 101]
     }
     sample_names = Dcpt(sample_names)
 
     sample_in_gripper = Cpt(
-        EpicsSignal, name="sample_in_gripper", read_pv="XOMNY-SAMPLE_DB_omny:110.VAL"
+        EpicsSignal, name="sample_in_gripper", read_pv="XOMNY-SAMPLE_DB_omny:110.VAL", auto_monitor=True
     )
     sample_in_gripper_name = Cpt(
         EpicsSignal,
         name="sample_in_gripper_name",
         read_pv="XOMNY-SAMPLE_DB_omny:110.DESC",
         string=True,
+        auto_monitor=True
     )
 
     sample_in_samplestage = Cpt(
-        EpicsSignal, name="sample_in_samplestage", read_pv="XOMNY-SAMPLE_DB_omny:0.VAL"
+        EpicsSignal, name="sample_in_samplestage", read_pv="XOMNY-SAMPLE_DB_omny:0.VAL", auto_monitor=True
     )
     sample_in_samplestage_name = Cpt(
         EpicsSignal,
         name="sample_in_samplestage_name",
         read_pv="XOMNY-SAMPLE_DB_omny:0.DESC",
         string=True,
+        auto_monitor=True
     )
 
     def __init__(self, prefix="", *, name, **kwargs):

csaxs_bec/devices/omny/rt/rt_flomni_ophyd.py

@@ -392,6 +392,9 @@ class RtFlomniController(Controller):
             rtx = self.get_device_manager().devices.rtx
             min_signal = rtx.user_parameter.get("min_signal")
             low_signal = rtx.user_parameter.get("low_signal")
+            print(f"low signal: {low_signal}")
+            print(f"min signal: {min_signal}")
+            print(f"signal: {signal}")
             if signal < min_signal:
                 time.sleep(1)
                 if signal < min_signal:

csaxs_bec/devices/omny/webcam_viewer.py

@@ -0,0 +1,65 @@
+import requests
+import threading
+import cv2
+import numpy as np
+from ophyd import Device, Component as Cpt
+from ophyd_devices import PreviewSignal
+import traceback 
+
+from bec_lib.logger import bec_logger
+
+logger = bec_logger.logger
+
+class WebcamViewer(Device):
+    USER_ACCESS = ["start_live_mode", "stop_live_mode"]
+    preview = Cpt(PreviewSignal, ndim=2, num_rotation_90=0, transpose=False)
+
+    def __init__(self, url:str, name:str, num_rotation_90=0, transpose=False, **kwargs) -> None:
+        super().__init__(name=name, **kwargs)
+        self.url = url
+        self._connection = None
+        self._update_thread = None
+        self._buffer = b""
+        self._shutdown_event = threading.Event()
+        self.preview.num_rotation_90 = num_rotation_90
+        self.preview.transpose = transpose
+
+    def start_live_mode(self) -> None:
+        if self._connection is not None:
+            return
+        self._update_thread = threading.Thread(target=self._update_loop, daemon=True)
+        self._update_thread.start()
+
+    def _update_loop(self) -> None:
+        while not self._shutdown_event.is_set():
+            try:
+                self._connection = requests.get(self.url, stream=True)
+                for chunk in self._connection.iter_content(chunk_size=1024):
+                    self._buffer += chunk
+                    start = self._buffer.find(b'\xff\xd8') # JPEG start
+                    end = self._buffer.find(b'\xff\xd9') # JPEG end
+                    if start == -1 or end == -1:
+                        continue
+                    jpg = self._buffer[start:end+2]
+                    self._buffer = self._buffer[end+2:]
+
+                    image = cv2.imdecode(np.frombuffer(jpg, np.uint8), cv2.IMREAD_COLOR)
+                    if image is not None:
+                        image = cv2.cvtColor(image, cv2.COLOR_BGR2RGB)
+                        self.preview.put(image)
+            except Exception as exc:
+                content = traceback.format_exc()
+                logger.error(f"Image update loop failed: {content}")
+
+    def stop_live_mode(self) -> None:
+        if self._connection is None:
+            return
+        self._shutdown_event.set()
+        if self._connection is not None:
+            self._connection.close()
+            self._connection = None
+        if self._update_thread is not None:
+            self._update_thread.join()
+            self._update_thread = None
+
+        self._shutdown_event.clear()

csaxs_bec/scans/flomni_fermat_scan.py

@@ -33,11 +33,11 @@ logger = bec_logger.logger
 
 class FlomniFermatScan(SyncFlyScanBase):
     scan_name = "flomni_fermat_scan"
-    scan_report_hint = "table"
     scan_type = "fly"
     required_kwargs = ["fovx", "fovy", "exp_time", "step", "angle"]
     arg_input = {}
     arg_bundle_size = {"bundle": len(arg_input), "min": None, "max": None}
+    use_scan_progress_report = True
 
     def __init__(
         self,
@@ -74,6 +74,7 @@ class FlomniFermatScan(SyncFlyScanBase):
         """
 
         super().__init__(parameter=parameter, **kwargs)
+        self.show_live_table = False
         self.axis = []
         self.fovx = fovx
         self.fovy = fovy
@@ -168,6 +169,7 @@ class FlomniFermatScan(SyncFlyScanBase):
         tracker_signal_status = yield from self.stubs.send_rpc_and_wait(
             "rtx", "controller.laser_tracker_check_signalstrength"
         )
+        #self.device_manager.connector.send_client_info(tracker_signal_status)
         if tracker_signal_status == "low":
             self.device_manager.connector.raise_alarm(
                 severity=0,

pyproject.toml

@@ -24,6 +24,7 @@ dependencies = [
     "pyueye",             # for the IDS uEye camera
     "bec_widgets",
     "zmq",
+    "opencv-python",
 ]
 
 [project.optional-dependencies]