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Feat/feat from flomni to lamni #261

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holler merged 5 commits from feat/featfromflomnitolamni into main 2026-07-16 14:40:31 +02:00
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Author SHA1 Message Date
x01dcandClaude Sonnet 5 6744908983 docs(lamni): mark flomni-to-lamni migration status, only webpage left
CI for csaxs_bec / test (pull_request) Successful in 2m34s
Details
Read the Docs Deploy Trigger / trigger-rtd-webhook (push) Successful in 2s
Details
CI for csaxs_bec / test (push) Successful in 1m50s
Details 
FLOMNI_TO_LAMNI_COMPARISON.md was written before any porting work started
and read as a stale plan once the tomo-queue backend and tomo-params GUI
were both done. Add a status pointer at the top so a fresh session can
find what's actually left (the webpage generator) without re-deriving it.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
 2026-07-16 14:22:45 +02:00
x01dcandClaude Sonnet 5 46cadc8894 fix(lamni): show progress GUI on scan start, clear busy heartbeat on exit 
Mirrors two fixes already made to Flomni.tomo_scan(): LamNI.tomo_scan()
never opened the progress GUI automatically, and left a stale "busy"
heartbeat for up to 120s after a scan had already finished (or crashed),
since it was only ever reset at the start of the next scan.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
 2026-07-16 14:21:45 +02:00
x01dcandClaude Sonnet 5 f3c90c5b91 fix(lamni): fix three real tomo_scan() crashes, mirroring flomni's fixes 
bec.active_account.decode() crashed on every real tomo_scan() call --
active_account is a plain str, not bytes. Flomni's equivalent never had
the .decode() call and already guards an empty active_account (e.g. a
dev/sim session) by skipping sample-database registration instead of
crashing. Same bug fixed in DataDrivenLamNI.tomo_scan() (extra_tomo.py),
which had an identical inline copy.

write_pdf_report() read a nonexistent "mokev" device; the real device is
ccm_energy. Reads it for real now, wrapped in a broad try/except falling
back to "N/A" if unavailable, rather than a hardcoded placeholder.

write_pdf_report()'s logbook/scilog write crashed when scilog isn't
configured -- lamni.py already had this exact tolerance pattern one
method over, in write_to_scilog(); applied the same try/except here.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
 2026-07-16 13:59:12 +02:00
x01dcandClaude Sonnet 5 bac3fa8754 feat(lamni,bec_widgets): generalize tomo-params GUI to lamni, fix two sub_tomo_scan angle bugs 
Generalize TomoParamsWidget to lamni via a SETUP_PROFILES mechanism
(setup detection, per-setup field lists/order, a new Offsets section,
a setup-agnostic "Duplicate job" queue button), fixing two latent
TomoQueueDialog bugs that silently mishandled lamni jobs along the way.

While verifying the GUI's projection-count preview against the CLI,
found two real, pre-existing bugs in LamNI.sub_tomo_scan() unrelated
to the GUI itself: a duplicate closing angle every sub-tomogram
(360=0 degrees), and a phase offset computed from the raw stepsize
instead of the achievable one, breaking the equally-spaced-when-
combined guarantee for sub-tomogram pairs/quads/the full set. Both
fixed to mirror Flomni's existing, correct equivalents.

Also fills in lamni's user documentation with the queue/command-job/
at-each-angle-hook system, which it previously lacked entirely,
mirroring flomni.md's coverage.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
 2026-07-16 13:39:08 +02:00
x01dcandClaude Sonnet 5 95d46c9d49 feat(flomni,lamni): port tomo-queue backend to lamni via shared mixin
CI for csaxs_bec / test (push) Successful in 1m29s
Details 
Extract the tomo-queue/at-each-angle-hook backend (job proxy, hook
registry, command-job dispatch) out of flomni.py into a new shared
TomoQueueMixin (OMNY_shared/tomo_queue_mixin.py) so it can be reused
instead of duplicated, avoiding the same param-name-mirror drift
already flagged for tomo_params.py. Flomni's refactor is behavior-
preserving; LamNI is the new consumer, with its own param names
(tomo_circfov, lamni_stitch_x/y, ...) and no 180-degree/single-point
concepts, since lamni doesn't have them. Also adds LamNI.tomo_scan_resume(),
required for tomo_queue_execute()'s resume-after-crash path but not
previously present.

Verified via a new unit test suite (test_lamni_tomo_queue.py) plus live
checks against the running simulated flomni and lamni deployments,
documented in LamNI/AI_docs/TOMO_QUEUE_PORT.md.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
 2026-07-15 14:17:51 +02:00