feat: check all devices are enabled, if not try to enable

csaxs_bec/bec_ipython_client/plugins/LamNI/gui_tools.py

@@ -0,0 +1,188 @@
+import builtins
+
+from bec_widgets.cli.client import BECDockArea
+
+# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
+
+
+class LamniGuiToolsError(Exception):
+    pass
+
+
+class LamniGuiTools:
+
+    def __init__(self):
+        self.text_box = None
+        self.progressbar = None
+
+    def set_client(self, client):
+        self.client = client
+        self.gui = self.client.gui
+
+    def lamnigui_show_gui(self):
+        if "lamni" in self.gui.windows:
+            self.gui.lamni.show()
+        else:
+            self.gui.new("lamni")
+
+    def lamnigui_stop_gui(self):
+        self.gui.lamni.hide()
+
+    def lamnigui_raise(self):
+        self.gui.lamni.raise_window()
+
+    def lamnigui_show_xeyealign(self):
+        self.lamnigui_show_gui()
+        if self._lamnigui_check_attribute_not_exists("xeyegui"):
+            self.lamnigui_remove_all_docks()
+            self.xeyegui = self.gui.lamni.new("xeyegui").new("XRayEye")
+            # start live
+            if not dev.cam_xeye.live_mode:
+                dev.cam_xeye.live_mode = True
+
+
+    def _lamnigui_check_attribute_not_exists(self, attribute_name):
+        if hasattr(self.gui,"lamni"):
+            if hasattr(self.gui.lamni,attribute_name):
+                return False
+        return True
+
+    def lamnigui_remove_all_docks(self):
+        self.gui.lamni.delete_all() 
+        self.progressbar = None
+        self.text_box = None
+
+    def lamnigui_idle(self):
+        self.lamnigui_show_gui()
+        if self._lamnigui_check_attribute_not_exists("idle_text_box"):
+            self.lamnigui_remove_all_docks()
+            idle_text_box = self.gui.lamni.new("idle_textbox").new("TextBox")
+        text = (
+            "<pre>"
+            + "██████╗ ███████╗ ██████╗     ██╗      █████╗ ███╗   ███╗███╗   ██╗██╗\n"
+            + "██╔══██╗██╔════╝██╔════╝     ██║     ██╔══██╗████╗ ████║████╗  ██║██║\n"
+            + "██████╔╝█████╗  ██║          ██║     ███████║██╔████╔██║██╔██╗ ██║██║\n"
+            + "██╔══██╗██╔══╝  ██║          ██║     ██╔══██║██║╚██╔╝██║██║╚██╗██║██║\n"
+            + "██████╔╝███████╗╚██████╗     ███████╗██║  ██║██║ ╚═╝ ██║██║ ╚████║██║\n"
+            + "╚═════╝ ╚══════╝ ╚═════╝     ╚══════╝╚═╝  ╚═╝╚═╝     ╚═╝╚═╝  ╚═══╝╚═╝\n"
+            + "</pre>"
+        )
+        idle_text_box.set_html_text(text)
+
+    def lamnigui_docs(self, filename: str | None = None):
+        import csaxs_bec
+        from pathlib import Path
+
+        print("The general lamni documentation is at \nhttps://sls-csaxs.readthedocs.io/en/latest/user/ptychography/lamni.html#user-ptychography-lamni")
+
+        csaxs_bec_basepath = Path(csaxs_bec.__file__).parent
+        docs_folder = (
+            csaxs_bec_basepath /
+            "bec_ipython_client" / "plugins" / "lamni" / "docs"
+        )
+
+        if not docs_folder.is_dir():
+            raise NotADirectoryError(f"Docs folder not found: {docs_folder}")
+
+        pdfs = sorted(docs_folder.glob("*.pdf"))
+        if not pdfs:
+            raise FileNotFoundError(f"No PDF files found in {docs_folder}")
+
+        # --- Resolve PDF ------------------------------------------------------
+        if filename is not None:
+            pdf_file = docs_folder / filename
+            if not pdf_file.exists():
+                raise FileNotFoundError(f"Requested file not found: {filename}")
+        else:
+            print("\nAvailable lamni documentation PDFs:\n")
+            for i, pdf in enumerate(pdfs, start=1):
+                print(f"  {i:2d}) {pdf.name}")
+            print()
+
+            while True:
+                try:
+                    choice = int(input(f"Select a file (1–{len(pdfs)}): "))
+                    if 1 <= choice <= len(pdfs):
+                        pdf_file = pdfs[choice - 1]
+                        break
+                    print(f"Enter a number between 1 and {len(pdfs)}.")
+                except ValueError:
+                    print("Invalid input. Please enter a number.")
+
+        # --- GUI handling (active existence check) ----------------------------
+        self.lamnigui_show_gui()
+
+        if self._lamnigui_check_attribute_not_exists("PdfViewerWidget"):
+            self.lamnigui_remove_all_docks()
+            self.pdf_viewer = self.gui.lamni.new(widget="PdfViewerWidget")
+
+        # --- Load PDF ---------------------------------------------------------
+        self.pdf_viewer.PdfViewerWidget.load_pdf(str(pdf_file.resolve()))
+        print(f"\nLoaded: {pdf_file.name}\n")
+
+
+    def _lamnicam_check_device_exists(self, device):
+        try:
+            device
+        except:
+            return False
+        else:
+            return True
+
+    def lamnigui_show_progress(self):
+        self.lamnigui_show_gui()
+        if self._lamnigui_check_attribute_not_exists("progressbar"):
+            self.lamnigui_remove_all_docks()
+            # Add a new dock with a RingProgressBar widget
+            self.progressbar = self.gui.lamni.new("progressbar").new("RingProgressBar")
+            # Customize the size of the progress ring
+            self.progressbar.set_line_widths(20)
+            # Disable automatic updates and manually set the self.progressbar value
+            self.progressbar.enable_auto_updates(False)
+            # Set precision for the self.progressbar display
+            self.progressbar.set_precision(1)  # Display self.progressbar with one decimal places
+            # Setting multiple rigns with different values
+            self.progressbar.set_number_of_bars(3)
+            self.progressbar.rings[0].set_update("manual")
+            self.progressbar.rings[1].set_update("manual")
+            self.progressbar.rings[2].set_update("scan")
+            # Set the values of the rings to 50, 75, and 25 from outer to inner ring
+            # self.progressbar.set_value([50, 75])
+            # Add a new dock with a TextBox widget
+            self.text_box = self.gui.lamni.new(name="progress_text").new("TextBox")
+
+        self._lamnigui_update_progress()
+
+    def _lamnigui_update_progress(self):
+        if self.progressbar is not None:
+            progress = self.progress["projection"] / self.progress["total_projections"] * 100
+            subtomo_progress = (
+                self.progress["subtomo_projection"]
+                / self.progress["subtomo_total_projections"]
+                * 100
+            )
+            self.progressbar.set_value([progress, subtomo_progress, 0])
+            if self.text_box is not None:
+                text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
+                self.text_box.set_plain_text(text)
+
+
+if __name__ == "__main__":
+    from bec_lib.client import BECClient
+    from bec_widgets.cli.client_utils import BECGuiClient
+
+    client = BECClient()
+    client.start()
+    client.gui = BECGuiClient()
+
+    lamni_gui = LamniGuiTools(client)
+    lamni_gui.lamnigui_show_gui()
+    lamni_gui.lamnigui_show_progress()

csaxs_bec/bec_ipython_client/plugins/LamNI/lamni.py

@@ -2,7 +2,6 @@ import builtins
 import datetime
 import os
 import subprocess
-import threading
 import time
 from pathlib import Path
 
@@ -12,7 +11,13 @@ from bec_lib.alarm_handler import AlarmBase
 from bec_lib.pdf_writer import PDFWriter
 from typeguard import typechecked
 
-from csaxs_bec.bec_ipython_client.plugins.omny.omny_general_tools import OMNYTools
+from csaxs_bec.bec_ipython_client.plugins.omny.omny_general_tools import (
+    BeamlineChecker,
+    OMNYTools,
+    PtychoReconstructor,
+    TomoIDManager,
+)
+from csaxs_bec.bec_ipython_client.plugins.LamNI.gui_tools import LamniGuiTools
 
 from .alignment import XrayEyeAlign
 from .lamni_optics_mixin import LaMNIInitStages, LamNIOpticsMixin
@@ -26,26 +31,26 @@ if builtins.__dict__.get("bec") is not None:
     umvr = builtins.__dict__.get("umvr")
 
 
-class LamNI(LamNIOpticsMixin):
+class LamNI(LamNIOpticsMixin, LamniGuiTools):
     def __init__(self, client):
         super().__init__()
         self.client = client
         self.device_manager = client.device_manager
         self.align = XrayEyeAlign(client, self)
         self.init = LaMNIInitStages(client)
-        self.check_shutter = True
+
-        self.check_light_available = True
+        # Extracted collaborators
-        self.check_fofb = True
+        self.bl_chk = BeamlineChecker(client)
-        self._check_msgs = []
+        self.reconstructor = PtychoReconstructor(self.ptycho_reconstruct_foldername)
+        self.tomo_id_manager = TomoIDManager()
+        self.OMNYTools = OMNYTools(self.client)
+
         self.tomo_id = -1
         self.special_angles = []
         self.special_angle_repeats = 20
         self.special_angle_tolerance = 20
         self._current_special_angles = []
-        self._beam_is_okay = True
+
-        self._stop_beam_check_event = None
-        self.beam_check_thread = None
-        self.OMNYTools = OMNYTools(self.client)
         # Progress tracking
         self.progress = {}
         self.progress["tomo_type"] = "Equally spaced sub-tomograms"
@@ -57,104 +62,19 @@ class LamNI(LamNIOpticsMixin):
         self.progress["angle"] = 0
 
     # ------------------------------------------------------------------
-    # Beamline checks
+    # Beamline checks — delegated to BeamlineChecker
     # ------------------------------------------------------------------
 
-    def get_beamline_checks_enabled(self):
-        print(
-            f"Shutter: {self.check_shutter}\nFOFB: {self.check_fofb}\nLight available:"
-            f" {self.check_light_available}"
-        )
-
     @property
     def beamline_checks_enabled(self):
-        return {
+        return self.bl_chk.checks_enabled
-            "shutter": self.check_shutter,
-            "fofb": self.check_fofb,
-            "light available": self.check_light_available,
-        }
 
     @beamline_checks_enabled.setter
     def beamline_checks_enabled(self, val: bool):
-        self.check_shutter = val
+        self.bl_chk.checks_enabled = val
-        self.check_light_available = val
-        self.check_fofb = val
-        self.get_beamline_checks_enabled()
 
-    def _run_beamline_checks(self):
+    def get_beamline_checks_enabled(self):
-        msgs = []
+        self.bl_chk.print_status()
-        dev = builtins.__dict__.get("dev")
-        try:
-            if self.check_shutter:
-                shutter_val = dev.x12sa_es1_shutter_status.read(cached=True)
-                if shutter_val["value"].lower() != "open":
-                    self._beam_is_okay = False
-                    msgs.append("Check beam failed: Shutter is closed.")
-            if self.check_light_available:
-                machine_status = dev.sls_machine_status.read(cached=True)
-                if machine_status["value"] not in ["Light Available", "Light-Available"]:
-                    self._beam_is_okay = False
-                    msgs.append("Check beam failed: Light not available.")
-            if self.check_fofb:
-                fast_orbit_feedback = dev.sls_fast_orbit_feedback.read(cached=True)
-                if fast_orbit_feedback["value"] != "running":
-                    self._beam_is_okay = False
-                    msgs.append("Check beam failed: Fast orbit feedback is not running.")
-        except Exception:
-            logger.warning("Failed to check beam.")
-        return msgs
-
-    def _check_beam(self):
-        while not self._stop_beam_check_event.is_set():
-            self._check_msgs = self._run_beamline_checks()
-            if not self._beam_is_okay:
-                self._stop_beam_check_event.set()
-            time.sleep(1)
-
-    def _start_beam_check(self):
-        self._beam_is_okay = True
-        self._stop_beam_check_event = threading.Event()
-        self.beam_check_thread = threading.Thread(target=self._check_beam, daemon=True)
-        self.beam_check_thread.start()
-
-    def _was_beam_okay(self):
-        self._stop_beam_check_event.set()
-        self.beam_check_thread.join()
-        return self._beam_is_okay
-
-    def _print_beamline_checks(self):
-        for msg in self._check_msgs:
-            logger.warning(msg)
-
-    def _wait_for_beamline_checks(self):
-        self._print_beamline_checks()
-        try:
-            msg = bec.logbook.LogbookMessage()
-            msg.add_text(
-                "<p><mark class='pen-red'><strong>Beamline checks failed at"
-                f" {str(datetime.datetime.now())}: {''.join(self._check_msgs)}</strong></mark></p>"
-            ).add_tag(["BEC", "beam_check"])
-            self.client.logbook.send_logbook_message(msg)
-        except Exception:
-            logger.warning("Failed to send update to SciLog.")
-
-        while True:
-            self._beam_is_okay = True
-            self._check_msgs = self._run_beamline_checks()
-            if self._beam_is_okay:
-                break
-            self._print_beamline_checks()
-            time.sleep(1)
-
-        try:
-            msg = bec.logbook.LogbookMessage()
-            msg.add_text(
-                "<p><mark class='pen-red'><strong>Operation resumed at"
-                f" {str(datetime.datetime.now())}.</strong></mark></p>"
-            ).add_tag(["BEC", "beam_check"])
-            self.client.logbook.send_logbook_message(msg)
-        except Exception:
-            logger.warning("Failed to send update to SciLog.")
 
     # ------------------------------------------------------------------
     # Special angles
@@ -212,7 +132,6 @@ class LamNI(LamNIOpticsMixin):
     def feedback_status(self):
         self.device_manager.devices.rtx.controller.show_feedback_status()
 
-
     def show_interferometer_positions(self):
         self.device_manager.devices.rtx.controller.show_feedback_status()
 
@@ -222,6 +141,12 @@ class LamNI(LamNIOpticsMixin):
     def show_analog_signals(self):
         return self.device_manager.devices.rtx.controller.show_analog_signals()
 
+    def lights_off(self):
+        self.device_manager.devices.lsamx.controller.lights_off()
+
+    def lights_on(self):
+        self.device_manager.devices.lsamx.controller.lights_on()
+
     # ------------------------------------------------------------------
     # Global parameters (backed by BEC global vars)
     # ------------------------------------------------------------------
@@ -371,6 +296,7 @@ class LamNI(LamNIOpticsMixin):
     @ptycho_reconstruct_foldername.setter
     def ptycho_reconstruct_foldername(self, val: str):
         self.client.set_global_var("ptycho_reconstruct_foldername", val)
+        self.reconstructor.folder_name = val  # keep reconstructor in sync
 
     @property
     def tomo_angle_stepsize(self):
@@ -491,23 +417,22 @@ class LamNI(LamNIOpticsMixin):
             )
 
     # ------------------------------------------------------------------
-    # Sample database
+    # Sample database — delegated to TomoIDManager in omny general tools
     # ------------------------------------------------------------------
 
     def add_sample_database(
         self, samplename, date, eaccount, scan_number, setup, sample_additional_info, user
     ):
         """Add a sample to the OMNY sample database and retrieve the tomo id."""
-        subprocess.run(
+        return self.tomo_id_manager.register(
-            "wget --user=omny --password=samples -q -O /tmp/currsamplesnr.txt"
+            sample_name=samplename,
-            f" 'https://omny.web.psi.ch/samples/newmeasurement.php?sample={samplename}"
+            date=date,
-            f"&date={date}&eaccount={eaccount}&scannr={scan_number}&setup={setup}"
+            eaccount=eaccount,
-            f"&additional={sample_additional_info}&user={user}'",
+            scan_number=scan_number,
-            shell=True,
+            setup=setup,
+            additional_info=sample_additional_info,
+            user=user,
         )
-        with open("/tmp/currsamplesnr.txt") as tomo_number_file:
-            tomo_number = int(tomo_number_file.read())
-        return tomo_number
 
     # ------------------------------------------------------------------
     # Scan projection
@@ -524,7 +449,6 @@ class LamNI(LamNIOpticsMixin):
 
         for stitch_x in range(-self.lamni_stitch_x, self.lamni_stitch_x + 1):
             for stitch_y in range(-self.lamni_stitch_y, self.lamni_stitch_y + 1):
-                # pylint: disable=undefined-variable
                 self._current_scan_list.append(bec.queue.next_scan_number)
                 log_message = (
                     f"{str(datetime.datetime.now())}: LamNI scan projection at angle {angle},"
@@ -562,18 +486,11 @@ class LamNI(LamNIOpticsMixin):
     def tomo_reconstruct(self, base_path="~/Data10/specES1"):
         """Write the tomo reconstruct file for the reconstruction queue."""
         bec = builtins.__dict__.get("bec")
-        base_path = os.path.expanduser(base_path)
+        self.reconstructor.write(
-        ptycho_queue_path = Path(os.path.join(base_path, self.ptycho_reconstruct_foldername))
+            scan_list=self._current_scan_list,
-        ptycho_queue_path.mkdir(parents=True, exist_ok=True)
+            next_scan_number=bec.queue.next_scan_number,
-
+            base_path=base_path,
-        last_scan_number = bec.queue.next_scan_number - 1
-        ptycho_queue_file = os.path.abspath(
-            os.path.join(ptycho_queue_path, f"scan_{last_scan_number:05d}.dat")
         )
-        with open(ptycho_queue_file, "w") as queue_file:
-            scans = " ".join([str(scan) for scan in self._current_scan_list])
-            queue_file.write(f"p.scan_number {scans}\n")
-            queue_file.write("p.check_nextscan_started 1\n")
 
     def _at_each_angle(self, angle: float) -> None:
         self.tomo_scan_projection(angle)
@@ -635,7 +552,7 @@ class LamNI(LamNIOpticsMixin):
             print(f"Starting LamNI scan for angle {angle} in subtomo {subtomo_number}")
             self._print_progress()
             while not successful:
-                self._start_beam_check()
+                self.bl_chk.start()
                 if not self.special_angles:
                     self._current_special_angles = []
                 if self._current_special_angles:
@@ -662,10 +579,10 @@ class LamNI(LamNIOpticsMixin):
                 for scan_nr in range(start_scan_number, end_scan_number):
                     self._write_tomo_scan_number(scan_nr, angle, subtomo_number)
 
-                if self._was_beam_okay() and not error_caught:
+                if self.bl_chk.stop() and not error_caught:
                     successful = True
                 else:
-                    self._wait_for_beamline_checks()
+                    self.bl_chk.wait_until_recovered()
 
     def _golden(self, ii, howmany_sorted, maxangle=360, reverse=False):
         """Return the ii-th golden ratio angle within sorted bunches and its subtomo number."""
@@ -1010,4 +927,3 @@ class LamNI(LamNIOpticsMixin):
             ["BEC", "tomo_parameters", f"dataset_id_{dataset_id}", "LamNI", self.sample_name]
         )
         self.client.logbook.send_logbook_message(msg)
-

csaxs_bec/bec_ipython_client/plugins/LamNI/lamni_optics_mixin.py

@@ -51,7 +51,7 @@ class LaMNIInitStages:
             self.drive_axis_to_limit(dev.lsamrot, "forward")
             dev.lsamrot.enabled = False
             print("Now hard reboot the controller and run the initialization routine again.")
-            print("The controller will be disabled in bec. To enable dev.lsamrot.enabled=True")
+            print("Remark: The controller will be disabled in bec. It will be enabled by running the init route, \nbut in case needed, to enable manually set dev.lsamrot.enabled=True")
             return
 
         if self.OMNYTools.yesno(

csaxs_bec/bec_ipython_client/plugins/cSAXS/smaract.py

@@ -37,6 +37,92 @@ class cSAXSInitSmaractStages:
     # ------------------------------
     # Internal helpers (runtime-based)
     # ------------------------------
+
+    def _ensure_all_session_devices_enabled(self, selection: set | None = None, try_enable: bool = True):
+        """
+        Ensure all session devices (or a selection) that define 'bl_smar_stage' are enabled.
+
+        Parameters
+        ----------
+        selection : set | None
+            If provided, only devices in this set are considered.
+        try_enable : bool
+            If True, attempt to set device.enabled = True for devices that expose 'enabled' and are False.
+            If False, only report status without changing it.
+
+        Returns
+        -------
+        dict
+            {
+                "enabled_now": [device_names enabled by this call],
+                "already_enabled": [device_names already enabled or without 'enabled' attr],
+                "failed": [device_names that could not be enabled],
+                "inaccessible": [device_names not accessible]
+            }
+        """
+        enabled_now = []
+        already_enabled = []
+        failed = []
+        inaccessible = []
+
+        # Build axis map to restrict to SmarAct-based devices (same logic as other helpers)
+        axis_map = self._build_session_axis_map(selection=selection)
+
+        for dev_name in sorted(axis_map.keys()):
+            try:
+                d = self._get_device_object(dev_name)
+                if d is None:
+                    inaccessible.append(dev_name)
+                    logger.warning(f"[cSAXS] Device {dev_name} not accessible.")
+                    continue
+
+                # If device has no 'enabled' attribute, treat as already enabled/usable
+                if not hasattr(d, "enabled"):
+                    already_enabled.append(dev_name)
+                    continue
+
+                # If already enabled
+                try:
+                    if getattr(d, "enabled"):
+                        already_enabled.append(dev_name)
+                        continue
+                except Exception:
+                    # If reading enabled fails, treat as inaccessible for safety
+                    failed.append(dev_name)
+                    logger.warning(f"[cSAXS] Could not read 'enabled' for {dev_name}.")
+                    continue
+
+                # Device exists and is disabled
+                if try_enable:
+                    try:
+                        logger.info(f"[cSAXS] Enabling device {dev_name} (was disabled).")
+                        setattr(d, "enabled", True)
+                        # small delay to let device initialize if needed
+                        time.sleep(0.05)
+                        if getattr(d, "enabled"):
+                            enabled_now.append(dev_name)
+                            logger.info(f"[cSAXS] Device {dev_name} enabled.")
+                        else:
+                            failed.append(dev_name)
+                            logger.warning(f"[cSAXS] Device {dev_name} still disabled after enabling attempt.")
+                    except Exception as exc:
+                        failed.append(dev_name)
+                        logger.error(f"[cSAXS] Failed to enable {dev_name}: {exc}")
+                else:
+                    # Not trying to enable, just report
+                    failed.append(dev_name)
+            except Exception as exc:
+                failed.append(dev_name)
+                logger.error(f"[cSAXS] _ensure_all_session_devices_enabled error for {dev_name}: {exc}")
+
+        return {
+            "enabled_now": enabled_now,
+            "already_enabled": already_enabled,
+            "failed": failed,
+            "inaccessible": inaccessible,
+        }
+
+
     def _yesno(self, question: str, default: str = "y") -> bool:
         """
         Use OMNYTools.yesno if available; otherwise default to 'yes' (or fallback to input()).
@@ -107,6 +193,7 @@ class cSAXSInitSmaractStages:
     # ------------------------------
     # Public API
     # ------------------------------
+
     def smaract_reference_stages(self, force: bool = False, devices_to_reference=None):
         """
         Reference SmarAct stages using runtime discovery.
@@ -167,6 +254,19 @@ class cSAXSInitSmaractStages:
             devices_to_reference = [devices_to_reference]
         selection = set(devices_to_reference) if devices_to_reference else None
 
+        # First: ensure all relevant devices are enabled before attempting referencing
+        enable_report = self._ensure_all_session_devices_enabled(selection=selection, try_enable=True)
+        if enable_report["failed"]:
+            logger.warning(
+                "[cSAXS] Some devices could not be enabled before referencing: "
+                + ", ".join(sorted(enable_report["failed"]))
+            )
+        if enable_report["inaccessible"]:
+            logger.warning(
+                "[cSAXS] Some devices were inaccessible before referencing: "
+                + ", ".join(sorted(enable_report["inaccessible"]))
+            )
+
         # Build axis map for selected devices (or all devices present)
         axis_map = self._build_session_axis_map(selection=selection)
         if selection:
@@ -174,7 +274,6 @@ class cSAXSInitSmaractStages:
             if unknown:
                 print(f"Unknown devices requested or missing 'bl_smar_stage' (ignored): {unknown}")
 
-
         newly_referenced = []
         already_referenced = []
         failed = []
@@ -191,6 +290,17 @@ class cSAXSInitSmaractStages:
                 failed.append(dev_name)
                 continue
 
+            # If device exposes 'enabled' and is False, skip (we already tried enabling above)
+            try:
+                if hasattr(d, "enabled") and not getattr(d, "enabled"):
+                    print(f"{dev_name}: device disabled, skipping.")
+                    failed.append(dev_name)
+                    continue
+            except Exception:
+                print(f"{dev_name}: could not read enabled state, skipping.")
+                failed.append(dev_name)
+                continue
+
             try:
                 is_ref = d.controller.axis_is_referenced(ch)
 
@@ -246,7 +356,17 @@ class cSAXSInitSmaractStages:
     def smaract_check_all_referenced(self):
         """
         Check reference state for all SmarAct devices that define 'bl_smar_stage'.
+        This now enables all relevant devices first (attempt), then performs the checks.
         """
+        # Attempt to enable all relevant devices first (do not force enabling if you prefer)
+        enable_report = self._ensure_all_session_devices_enabled(selection=None, try_enable=True)
+        if enable_report["enabled_now"]:
+            print("Now enabled devices which were disabled before: " + ", ".join(sorted(enable_report["enabled_now"])))
+        if enable_report["failed"]:
+            print("Could not enable: " + ", ".join(sorted(enable_report["failed"])))
+        if enable_report["inaccessible"]:
+            print("Inaccessible: " + ", ".join(sorted(enable_report["inaccessible"])))
+
         axis_map = self._build_session_axis_map(selection=None)
         for dev_name in sorted(axis_map.keys()):
             ch = axis_map[dev_name]
@@ -254,6 +374,16 @@ class cSAXSInitSmaractStages:
             if d is None:
                 print(f"{dev_name}: device not accessible or unsupported.")
                 continue
+
+            # Skip devices that expose 'enabled' and are False
+            try:
+                if hasattr(d, "enabled") and not getattr(d, "enabled"):
+                    print(f"{dev_name} (axis {ch}) is disabled; skipping reference check.")
+                    continue
+            except Exception:
+                print(f"{dev_name} (axis {ch}) enabled-state unknown; skipping.")
+                continue
+
             try:
                 if d.controller.axis_is_referenced(ch):
                     print(f"{dev_name} (axis {ch}) is referenced.")
@@ -262,6 +392,7 @@ class cSAXSInitSmaractStages:
             except Exception as e:
                 print(f"Error checking {dev_name} (axis {ch}): {e}")
 
+
     def smaract_components_to_initial_position(self, devices_to_move=None):
         """
         Move selected (or all) SmarAct-based components to their configured init_position.

csaxs_bec/bec_ipython_client/plugins/flomni/flomni.py

@@ -975,49 +975,36 @@ class FlomniAlignmentMixin:
         use_vertical_default_values=True,
     ):
         """
-        Read the alignment parameters from xray eye fit.
+        Read the alignment offset from the given directory and set the global parameter
+        tomo_alignment_fit.
 
+        Args:
+            dir_path (str, optional): The directory to read the alignment offset from. Defaults to os.path.expanduser("~/Data10/specES1/internal/").
         """
         tomo_alignment_fit = np.zeros((2, 5))
-        # with open(os.path.join(dir_path, "ptychotomoalign_Ax.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_Ax.txt"), "r") as file:
-        #     tomo_alignment_fit[0][0] = file.readline()
+            tomo_alignment_fit[0][0] = file.readline()
 
-        # with open(os.path.join(dir_path, "ptychotomoalign_Bx.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_Bx.txt"), "r") as file:
-        #     tomo_alignment_fit[0][1] = file.readline()
+            tomo_alignment_fit[0][1] = file.readline()
 
-        # with open(os.path.join(dir_path, "ptychotomoalign_Cx.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_Cx.txt"), "r") as file:
-        #     tomo_alignment_fit[0][2] = file.readline()
+            tomo_alignment_fit[0][2] = file.readline()
 
-        # with open(os.path.join(dir_path, "ptychotomoalign_Ay.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_Ay.txt"), "r") as file:
-        #     tomo_alignment_fit[1][0] = file.readline()
+            tomo_alignment_fit[1][0] = file.readline()
 
-        # with open(os.path.join(dir_path, "ptychotomoalign_By.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_By.txt"), "r") as file:
-        #     tomo_alignment_fit[1][1] = file.readline()
+            tomo_alignment_fit[1][1] = file.readline()
 
-        # with open(os.path.join(dir_path, "ptychotomoalign_Cy.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_Cy.txt"), "r") as file:
-        #     tomo_alignment_fit[1][2] = file.readline()
+            tomo_alignment_fit[1][2] = file.readline()
 
-        # with open(os.path.join(dir_path, "ptychotomoalign_Ay3.txt"), "r") as file:
+        with open(os.path.join(dir_path, "ptychotomoalign_Ay3.txt"), "r") as file:
-        #     tomo_alignment_fit[1][3] = file.readline()
+            tomo_alignment_fit[1][3] = file.readline()
-
-        # with open(os.path.join(dir_path, "ptychotomoalign_Cy3.txt"), "r") as file:
-        #     tomo_alignment_fit[1][4] = file.readline()
-
-        params = dev.omny_xray_gui.fit_params_x.get()
-
-        #amplitude
-        tomo_alignment_fit[0][0] = params['SineModel_0_amplitude']
-        #phase
-        tomo_alignment_fit[0][1] = params['SineModel_0_shift']
-        #offset
-        tomo_alignment_fit[0][2] = params['LinearModel_1_intercept']
-        print("applying vertical default values from mirror calibration, not from fit!")
-        tomo_alignment_fit[1][0] = 0
-        tomo_alignment_fit[1][1] = 0
-        tomo_alignment_fit[1][2] = 0
-        tomo_alignment_fit[1][3] = 0
-        tomo_alignment_fit[1][4] = 0
 
+        with open(os.path.join(dir_path, "ptychotomoalign_Cy3.txt"), "r") as file:
+            tomo_alignment_fit[1][4] = file.readline()
 
         print("New alignment parameters loaded:")
         print(

csaxs_bec/bec_ipython_client/plugins/flomni/gui_tools.py

@@ -1,5 +1,7 @@
 import builtins
 
+from bec_widgets.cli.client import BECDockArea
+
 # from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
 
 if builtins.__dict__.get("bec") is not None:
@@ -7,7 +9,6 @@ if builtins.__dict__.get("bec") is not None:
     dev = builtins.__dict__.get("dev")
     scans = builtins.__dict__.get("scans")
 
-
 def umv(*args):
     return scans.umv(*args, relative=False)
 
@@ -28,7 +29,7 @@ class flomniGuiTools:
 
     def flomnigui_show_gui(self):
         if "flomni" in self.gui.windows:
-            self.gui.flomni.raise_window()
+            self.gui.flomni.show()
         else:
             self.gui.new("flomni")
 
@@ -38,38 +39,39 @@ class flomniGuiTools:
     def flomnigui_raise(self):
         self.gui.flomni.raise_window()
 
+    # def flomnigui_show_xeyealign(self):
+    #     self.flomnigui_show_gui()
+    #     if self.xeyegui is None:
+    #         self.flomnigui_remove_all_docks()
+    #         self.xeyegui = self.gui.flomni.new("xeyegui").new("XRayEye")
+    #         # start live
+    #         if not dev.cam_xeye.live_mode:
+    #             dev.cam_xeye.live_mode = True
+
     def flomnigui_show_xeyealign(self):
         self.flomnigui_show_gui()
         if self._flomnigui_check_attribute_not_exists("xeyegui"):
             self.flomnigui_remove_all_docks()
-            self.xeyegui = self.gui.flomni.new("XRayEye", object_name="xrayeye")
+            self.xeyegui = self.gui.flomni.new("xeyegui").new("XRayEye")
-        # start live
+            # start live
-        if not dev.cam_xeye.live_mode_enabled.get():
+            if not dev.cam_xeye.live_mode:
-            dev.cam_xeye.live_mode_enabled.put(True)
+                dev.cam_xeye.live_mode = True
-        self.xeyegui.switch_tab("alignment")
 
-    def flomnigui_show_xeyealign_fittab(self):
-        self.flomnigui_show_gui()
-        if self._flomnigui_check_attribute_not_exists("xeyegui"):
-            self.flomnigui_remove_all_docks()
-            self.xeyegui = self.gui.flomni.new("XRayEye")
-        self.xeyegui.switch_tab("fit")
 
     def _flomnigui_check_attribute_not_exists(self, attribute_name):
-        if hasattr(self.gui, "flomni"):
+        if hasattr(self.gui,"flomni"):
-            if hasattr(self.gui.flomni, attribute_name):
+            if hasattr(self.gui.flomni,attribute_name):
                 return False
         return True
 
+
     def flomnigui_show_cameras(self):
         self.flomnigui_show_gui()
-        if self._flomnigui_check_attribute_not_exists(
+        if self._flomnigui_check_attribute_not_exists("camera_gripper") or self._flomnigui_check_attribute_not_exists("camera_overview"):
-            "camera_gripper"
-        ) or self._flomnigui_check_attribute_not_exists("camera_overview"):
             self.flomnigui_remove_all_docks()
-            camera_gripper_image = self.gui.flomni.new("Image")
+            camera_gripper_image = self.gui.flomni.new("camera_gripper").new("Image")
             if self._flomnicam_check_device_exists(dev.cam_flomni_gripper):
-                camera_gripper_image.image(device="cam_flomni_gripper", signal="preview")
+                camera_gripper_image.image(("cam_flomni_gripper", "preview"))
                 camera_gripper_image.lock_aspect_ratio = True
                 camera_gripper_image.enable_fps_monitor = True
                 camera_gripper_image.enable_toolbar = False
@@ -78,9 +80,9 @@ class flomniGuiTools:
                 dev.cam_flomni_gripper.start_live_mode()
             else:
                 print("Cannot open camera_gripper. Device does not exist.")
-            camera_overview_image = self.gui.flomni.new("Image")
+            camera_overview_image = self.gui.flomni.new("camera_overview").new("Image")
             if self._flomnicam_check_device_exists(dev.cam_flomni_overview):
-                camera_overview_image.image(device="cam_flomni_overview", signal="preview")
+                camera_overview_image.image(("cam_flomni_overview", "preview"))
                 camera_overview_image.lock_aspect_ratio = True
                 camera_overview_image.enable_fps_monitor = True
                 camera_overview_image.enable_toolbar = False
@@ -91,9 +93,9 @@ class flomniGuiTools:
                 print("Cannot open camera_overview. Device does not exist.")
 
     def flomnigui_remove_all_docks(self):
-        # dev.cam_flomni_overview.stop_live_mode()
+        #dev.cam_flomni_overview.stop_live_mode()
-        # dev.cam_flomni_gripper.stop_live_mode()
+        #dev.cam_flomni_gripper.stop_live_mode()
-        # dev.cam_xeye.live_mode = False
+        #dev.cam_xeye.live_mode = False
         self.gui.flomni.delete_all() 
         self.progressbar = None
         self.text_box = None
@@ -102,14 +104,15 @@ class flomniGuiTools:
         self.flomnigui_show_gui()
         if self._flomnigui_check_attribute_not_exists("idle_text_box"):
             self.flomnigui_remove_all_docks()
-            idle_text_box = self.gui.flomni.new("TextBox")
+            idle_text_box = self.gui.flomni.new("idle_textbox").new("TextBox")
         text = (
             "<pre>"
-            + " ,---.,--. ,-----. ,--.   ,--.,--.  ,--.,--. \n"
+            + "██████╗ ███████╗ ██████╗     ███████╗██╗      ██████╗ ███╗   ███╗███╗   ██╗██╗\n"
-            + "/  .-'|  |'  .-.  '|   `.'   ||  ,'.|  ||  | \n"
+            + "██╔══██╗██╔════╝██╔════╝     ██╔════╝██║     ██╔═══██╗████╗ ████║████╗  ██║██║\n"
-            + "|  `-,|  ||  | |  ||  |'.'|  ||  |' '  ||  | \n"
+            + "██████╔╝█████╗  ██║          █████╗  ██║     ██║   ██║██╔████╔██║██╔██╗ ██║██║\n"
-            + "|  .-'|  |'  '-'  '|  |   |  ||  | `   ||  | \n"
+            + "██╔══██╗██╔══╝  ██║          ██╔══╝  ██║     ██║   ██║██║╚██╔╝██║██║╚██╗██║██║\n"
-            + "`--'  `--' `-----' `--'   `--'`--'  `--'`--' \n"
+            + "██████╔╝███████╗╚██████╗     ██║     ███████╗╚██████╔╝██║ ╚═╝ ██║██║ ╚████║██║\n"
+            + "╚═════╝ ╚══════╝ ╚═════╝     ╚═╝     ╚══════╝ ╚═════╝ ╚═╝     ╚═╝╚═╝  ╚═══╝╚═╝\n"
             + "</pre>"
         )
         idle_text_box.set_html_text(text)
@@ -118,12 +121,13 @@ class flomniGuiTools:
         import csaxs_bec
         from pathlib import Path
 
-        print(
+        print("The general flOMNI documentation is at \nhttps://sls-csaxs.readthedocs.io/en/latest/user/ptychography/flomni.html#user-ptychography-flomni")
-            "The general flOMNI documentation is at \nhttps://sls-csaxs.readthedocs.io/en/latest/user/ptychography/flomni.html#user-ptychography-flomni"
-        )
 
         csaxs_bec_basepath = Path(csaxs_bec.__file__).parent
-        docs_folder = csaxs_bec_basepath / "bec_ipython_client" / "plugins" / "flomni" / "docs"
+        docs_folder = (
+            csaxs_bec_basepath /
+            "bec_ipython_client" / "plugins" / "flomni" / "docs"
+        )
 
         if not docs_folder.is_dir():
             raise NotADirectoryError(f"Docs folder not found: {docs_folder}")
@@ -161,9 +165,10 @@ class flomniGuiTools:
             self.pdf_viewer = self.gui.flomni.new(widget="PdfViewerWidget")
 
         # --- Load PDF ---------------------------------------------------------
-        self.pdf_viewer.load_pdf(str(pdf_file.resolve()))
+        self.pdf_viewer.PdfViewerWidget.load_pdf(str(pdf_file.resolve()))
         print(f"\nLoaded: {pdf_file.name}\n")
 
+
     def _flomnicam_check_device_exists(self, device):
         try:
             device
@@ -177,18 +182,26 @@ class flomniGuiTools:
         if self._flomnigui_check_attribute_not_exists("progressbar"):
             self.flomnigui_remove_all_docks()
             # Add a new dock with a RingProgressBar widget
-            self.progressbar = self.gui.flomni.new("RingProgressBar")
+            self.progressbar = self.gui.flomni.new("progressbar").new("RingProgressBar")
-
+            # Customize the size of the progress ring
-            # Setting multiple rings with different values
+            self.progressbar.set_line_widths(20)
-            self.progressbar.add_ring().set_update("manual")
+            # Disable automatic updates and manually set the self.progressbar value
-            self.progressbar.add_ring().set_update("manual")
+            self.progressbar.enable_auto_updates(False)
-            self.progressbar.add_ring().set_update("scan")
+            # Set precision for the self.progressbar display
+            self.progressbar.set_precision(1)  # Display self.progressbar with one decimal places
+            # Setting multiple rigns with different values
+            self.progressbar.set_number_of_bars(3)
+            self.progressbar.rings[0].set_update("manual")
+            self.progressbar.rings[1].set_update("manual")
+            self.progressbar.rings[2].set_update("scan")
+            # Set the values of the rings to 50, 75, and 25 from outer to inner ring
+            # self.progressbar.set_value([50, 75])
+            # Add a new dock with a TextBox widget
+            self.text_box = self.gui.flomni.new(name="progress_text").new("TextBox")
 
         self._flomnigui_update_progress()
 
     def _flomnigui_update_progress(self):
-        main_progress_ring = self.progressbar.rings[0]
-        subtomo_progress_ring = self.progressbar.rings[1]
         if self.progressbar is not None:
             progress = self.progress["projection"] / self.progress["total_projections"] * 100
             subtomo_progress = (
@@ -196,11 +209,10 @@ class flomniGuiTools:
                 / self.progress["subtomo_total_projections"]
                 * 100
             )
-            main_progress_ring.set_value(progress)
+            self.progressbar.set_value([progress, subtomo_progress, 0])
-            subtomo_progress_ring.set_value(subtomo_progress)
+            if self.text_box is not None:
-
+                text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
-            text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
+                self.text_box.set_plain_text(text)
-            self.progressbar.set_center_label(text)
 
 
 if __name__ == "__main__":
@@ -211,7 +223,6 @@ if __name__ == "__main__":
     client.start()
     client.gui = BECGuiClient()
 
-    flomni_gui = flomniGuiTools()
+    flomni_gui = flomniGuiTools(client)
-    flomni_gui.set_client(client)
     flomni_gui.flomnigui_show_gui()
     flomni_gui.flomnigui_show_progress()

csaxs_bec/bec_ipython_client/plugins/flomni/x_ray_eye_align.py

@@ -5,11 +5,9 @@ import os
 import time
 from typing import TYPE_CHECKING
 
-import numpy as np
-
 from bec_lib import bec_logger
 
-# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
 
 logger = bec_logger.logger
 # import builtins to avoid linter errors
@@ -17,18 +15,16 @@ bec = builtins.__dict__.get("bec")
 dev = builtins.__dict__.get("dev")
 scans = builtins.__dict__.get("scans")
 
-
 def umv(*args):
     return scans.umv(*args, relative=False)
 
-
 if TYPE_CHECKING:
     from bec_ipython_client.plugins.flomni import Flomni
 
 
 class XrayEyeAlign:
     # pixel calibration, multiply to get mm
-    test_wo_movements = True
+    labview=False
     PIXEL_CALIBRATION = 0.1 / 113  # .2 with binning
 
     def __init__(self, client, flomni: Flomni) -> None:
@@ -40,190 +36,209 @@ class XrayEyeAlign:
         self.flomni.reset_correction()
         self.flomni.reset_tomo_alignment_fit()
 
-    @property
-    def gui(self):
-        return self.flomni.xeyegui
-
     def _reset_init_values(self):
         self.shift_xy = [0, 0]
         self._xray_fov_xy = [0, 0]
 
-    def update_frame(self, keep_shutter_open=False):
+    def save_frame(self):
+        epics_put("XOMNYI-XEYE-SAVFRAME:0", 1)
 
-        if not dev.cam_xeye.live_mode_enabled.get():
+    def update_frame(self,keep_shutter_open=False):
-            dev.cam_xeye.live_mode_enabled.put(True)
+        if self.labview:
+            epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
             
-        self.gui.on_live_view_enabled(True)
+        if not self.labview:
+            self.flomni.flomnigui_show_xeyealign()
+            if not dev.cam_xeye.live_mode:
+                dev.cam_xeye.live_mode = True
 
-        dev.omnyfsh.fshopen()
+        epics_put("XOMNYI-XEYE-ACQ:0", 1)
+        if self.labview:
+            # wait for start live
+            while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
+                time.sleep(0.5)
+                print("waiting for live view to start...")
+
+        fshopen()
+
+        if self.labview:
+            epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
+
+            while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
+                print("waiting for new frame...")
+                time.sleep(0.5)
 
         time.sleep(0.5)
         # stop live view
         if not keep_shutter_open:
-            self.gui.on_live_view_enabled(False)
+            epics_put("XOMNYI-XEYE-ACQ:0", 0)
             time.sleep(0.1)
-            dev.omnyfsh.fshclose()
+            fshclose()
-            print("Received new frame.")
+            print("got new frame")
         else:
             print("Staying in live view, shutter is and remains open!")
 
     def tomo_rotate(self, val: float):
-        if not self.test_wo_movements:
+        # pylint: disable=undefined-variable
-            umv(self.device_manager.devices.fsamroy, val)
+        umv(self.device_manager.devices.fsamroy, val)
 
     def get_tomo_angle(self):
         return self.device_manager.devices.fsamroy.readback.get()
 
     def update_fov(self, k: int):
-        self._xray_fov_xy[0] = max(
+        self._xray_fov_xy[0] = max(epics_get(f"XOMNYI-XEYE-XWIDTH_X:{k}"), self._xray_fov_xy[0])
-            getattr(dev.omny_xray_gui, f"width_x_{k}").get(), self._xray_fov_xy[0]
+        self._xray_fov_xy[1] = max(0, self._xray_fov_xy[0])
-        )
-        self._xray_fov_xy[1] = max(
-            getattr(dev.omny_xray_gui, f"width_y_{k}").get(), self._xray_fov_xy[1]
-        )
 
-    def movement_buttons_enabled(self, enablex: bool, enabley: bool):
+    @property
-        self.gui.on_motors_enable(enablex, enabley)
+    def movement_buttons_enabled(self):
+        return [epics_get("XOMNYI-XEYE-ENAMVX:0"), epics_get("XOMNYI-XEYE-ENAMVY:0")]
+
+    @movement_buttons_enabled.setter
+    def movement_buttons_enabled(self, enabled: bool):
+        enabled = int(enabled)
+        epics_put("XOMNYI-XEYE-ENAMVX:0", enabled)
+        epics_put("XOMNYI-XEYE-ENAMVY:0", enabled)
 
     def send_message(self, msg: str):
-        print(f"In alginment GUI: {msg}")
+        epics_put("XOMNYI-XEYE-MESSAGE:0.DESC", msg)
-        self.gui.user_message = msg
 
-    def align(self, keep_shutter_open=False):
+    def align(self,keep_shutter_open=False):
-        self.flomni.flomnigui_show_xeyealign()
         if not keep_shutter_open:
-            print(
+            print("This routine can be called with paramter keep_shutter_open=True to keep the shutter always open")
-                "This routine can be called with paramter keep_shutter_open=True to keep the shutter always open"
-            )
         self.send_message("Getting things ready. Please wait...")
 
-        self.gui.enable_submit_button(False)
+        #potential unresolved movement requests to zero
-
+        epics_put("XOMNYI-XEYE-MVX:0", 0)
-        # Initialize xray align device
+        epics_put("XOMNYI-XEYE-MVY:0", 0)
-        # clear potential pending movement requests
-        dev.omny_xray_gui.mvx.set(0)
-        dev.omny_xray_gui.mvy.set(0)
-        # reset submit channel
-        dev.omny_xray_gui.submit.set(0)
-
-        self.movement_buttons_enabled(False, False)
 
         # reset shift xy and fov params
         self._reset_init_values()
 
         self.flomni.lights_off()
 
-        if not self.test_wo_movements:
+        self.flomni.flomnigui_show_xeyealign()
-            self.tomo_rotate(0)
+        self.flomni.flomnigui_raise()
 
-            self.flomni.feye_in()
+        self.tomo_rotate(0)
+        epics_put("XOMNYI-XEYE-ANGLE:0", 0)
+
+        self.flomni.feye_in()
 
         self.flomni.laser_tracker_on()
 
         self.flomni.feedback_enable_with_reset()
 
         # disable movement buttons
-        self.movement_buttons_enabled(False, False)
+        self.movement_buttons_enabled = False
 
         sample_name = self.flomni.sample_get_name(0)
-        self.gui.sample_name = sample_name
+        epics_put("XOMNYI-XEYE-SAMPLENAME:0.DESC", sample_name)
 
         # this makes sure we are in a defined state
         self.flomni.feedback_disable()
 
-        if not self.test_wo_movements:
+        epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
-            self.flomni.fosa_out()
 
-            fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
+        self.flomni.fosa_out()
-            umv(dev.fsamx, fsamx_in - 0.25)
 
-            self.flomni.ffzp_in()
+        fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
+        umv(dev.fsamx, fsamx_in - 0.25)
 
+        self.flomni.ffzp_in()
         self.update_frame(keep_shutter_open)
 
-        self.gui.enable_submit_button(True)
+        # enable submit buttons
-        dev.omny_xray_gui.step.set(0).wait()
+        self.movement_buttons_enabled = False
+        epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+        epics_put("XOMNYI-XEYE-STEP:0", 0)
         self.send_message("Submit center value of FZP.")
 
         k = 0
         while True:
-            if dev.omny_xray_gui.submit.get() == 1:
+            if epics_get("XOMNYI-XEYE-SUBMIT:0") == 1:
-
+                val_x = epics_get(f"XOMNYI-XEYE-XVAL_X:{k}") / 2 * self.PIXEL_CALIBRATION  # in mm
-                self.alignment_values[k] = (
+                self.alignment_values[k] = val_x
-                    getattr(dev.omny_xray_gui, f"xval_x_{k}").get() / 2 * self.PIXEL_CALIBRATION
-                )  # in mm
                 print(f"Clicked position {k}: x {self.alignment_values[k]}")
                 rtx_position = dev.rtx.readback.get() / 1000
                 print(f"Current rtx position {rtx_position}")
                 self.alignment_values[k] -= rtx_position
                 print(f"Corrected position {k}: x {self.alignment_values[k]}")
-                # reset submit channel
+
-                dev.omny_xray_gui.submit.set(0)
                 if k == 0:  # received center value of FZP
                     self.send_message("please wait ...")
-                    self.movement_buttons_enabled(False, False)
+                    self.movement_buttons_enabled = False
-                    self.gui.enable_submit_button(False)
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
 
                     self.flomni.feedback_disable()
-                    if not self.test_wo_movements:
+                    fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
-                        fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
+                    umv(dev.fsamx, fsamx_in)
-                        umv(dev.fsamx, fsamx_in)
 
-                        self.flomni.foptics_out()
+                    self.flomni.foptics_out()
 
-                        time.sleep(0.5)
+                    self.flomni.feedback_disable()
+                    umv(dev.fsamx, fsamx_in - 0.25)
 
+                    if self.labview:
+                        self.update_frame(keep_shutter_open)
+                        epics_put("XOMNYI-XEYE-RECBG:0", 1)
+                        while epics_get("XOMNYI-XEYE-RECBG:0") == 1:
+                            time.sleep(0.5)
+                            print("waiting for background frame...")
+
+                    umv(dev.fsamx, fsamx_in)
+                    time.sleep(0.5)
                     self.flomni.feedback_enable_with_reset()
 
                     self.update_frame(keep_shutter_open)
-                    self.send_message("Step 1/5: Adjust sample height and submit center")
+                    self.send_message("Adjust sample height and submit center")
-                    self.gui.enable_submit_button(True)
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
-                    self.movement_buttons_enabled(True, True)
+                    self.movement_buttons_enabled = True
 
                 elif 1 <= k < 5:  # received sample center value at samroy 0 ... 315
                     self.send_message("please wait ...")
-                    self.gui.enable_submit_button(False)
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
-                    self.movement_buttons_enabled(False, False)
+                    self.movement_buttons_enabled = False
 
                     umv(dev.rtx, 0)
                     self.tomo_rotate(k * 45)
-                    dev.omny_xray_gui.angle.set(self.get_tomo_angle())
+                    epics_put("XOMNYI-XEYE-ANGLE:0", self.get_tomo_angle())
                     self.update_frame(keep_shutter_open)
-                    self.send_message(f"Step {k+1}/5: Submit sample center")
+                    self.send_message("Submit sample center")
-                    self.gui.enable_submit_button(True)
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
-                    self.movement_buttons_enabled(True, False)
+                    epics_put("XOMNYI-XEYE-ENAMVX:0", 1)
                     self.update_fov(k)
 
                 elif k == 5:  # received sample center value at samroy 270 and done
                     self.send_message("done...")
-                    self.gui.enable_submit_button(False)
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
-                    self.movement_buttons_enabled(False, False)
+                    self.movement_buttons_enabled = False
                     self.update_fov(k)
                     break
 
                 k += 1
-                dev.omny_xray_gui.step.set(k)
+                epics_put("XOMNYI-XEYE-STEP:0", k)
 
-            _xrayeyalignmvx = dev.omny_xray_gui.mvx.get()
+            _xrayeyalignmvx = epics_get("XOMNYI-XEYE-MVX:0")
             if _xrayeyalignmvx != 0:
                 umvr(dev.rtx, _xrayeyalignmvx)
                 print(f"Current rtx position {dev.rtx.readback.get() / 1000}")
+                epics_put("XOMNYI-XEYE-MVX:0", 0)
+                if k > 0:
+                    epics_put(f"XOMNYI-XEYE-STAGEPOSX:{k}", dev.rtx.readback.get() / 1000)
                 time.sleep(3)
-                dev.omny_xray_gui.mvx.set(0)
                 self.update_frame(keep_shutter_open)
 
             if k < 2:
                 # allow movements, store movements to calculate center
-                _xrayeyalignmvy = dev.omny_xray_gui.mvy.get()
+                _xrayeyalignmvy = epics_get("XOMNYI-XEYE-MVY:0")
                 if _xrayeyalignmvy != 0:
                     self.flomni.feedback_disable()
-                    if not self.test_wo_movements:
+                    umvr(dev.fsamy, _xrayeyalignmvy / 1000)
-                        umvr(dev.fsamy, _xrayeyalignmvy / 1000)
                     time.sleep(2)
-                    dev.omny_xray_gui.mvy.set(0)
+                    epics_put("XOMNYI-XEYE-MVY:0", 0)
                     self.flomni.feedback_enable_with_reset()
                     self.update_frame(keep_shutter_open)
-            time.sleep(0.1)
+            time.sleep(0.2)
 
         self.write_output()
         fovx = self._xray_fov_xy[0] * self.PIXEL_CALIBRATION * 1000 / 2
@@ -233,17 +248,22 @@ class XrayEyeAlign:
 
         umv(dev.rtx, 0)
 
-        if keep_shutter_open:
+        # free camera        
-            if self.flomni.OMNYTools.yesno("Close the shutter now?", "y"):
+        if self.labview:
-                dev.omnyfsh.fshclose()
+            epics_put("XOMNYI-XEYE-ACQ:0", 2)
-                self.gui.on_live_view_enabled(False)
+        if keep_shutter_open and not self.labview:
-                print("setting 'XOMNYI-XEYE-ACQ:0'")
+            if self.flomni.OMNYTools.yesno("Close the shutter now?","y"):
+                fshclose()
+                epics_put("XOMNYI-XEYE-ACQ:0", 0)
+        if not self.labview:
+            self.flomni.flomnigui_idle()
+  
 
         print(
             f"The largest field of view from the xrayeyealign was \nfovx = {fovx:.0f} microns, fovy"
             f" = {fovy:.0f} microns"
         )
-        print("Check the fit in the GUI...")
+        print("Use the matlab routine to FIT the current alignment...")
 
         print("Then LOAD ALIGNMENT PARAMETERS by running flomni.read_alignment_offset()\n")
 
@@ -251,32 +271,9 @@ class XrayEyeAlign:
         file = os.path.expanduser("~/Data10/specES1/internal/xrayeye_alignmentvalues")
         if not os.path.exists(file):
             os.makedirs(os.path.dirname(file), exist_ok=True)
-
         with open(file, "w") as alignment_values_file:
             alignment_values_file.write("angle\thorizontal\n")
-
-            # Initialize an empty list to store fovx values
-            fovx_list = []
-            fovx_offsets = np.zeros(5)  # holds offsets for k = 1..5
-
             for k in range(1, 6):
                 fovx_offset = self.alignment_values[0] - self.alignment_values[k]
-                fovx_offsets[k - 1] = fovx_offset  # store in array
-
-                fovx_x = (k - 1) * 45
-                fovx_list.append([fovx_x, fovx_offset * 1000])  # Append the data to the list
-
                 print(f"Writing to file new alignment: number {k}, value x {fovx_offset}")
-                alignment_values_file.write(f"{fovx_x}\t{fovx_offset * 1000}\n")
+                alignment_values_file.write(f"{(k-1)*45}\t{fovx_offset*1000}\n")
-
-            # Now build final numpy array:
-            data = np.array(
-                [
-                    [0, 45, 90, 135, 180],  # angles
-                    fovx_offsets * 1000,  # fovx_offset values
-                    [0, 0, 0, 0, 0],
-                ]
-            )
-        self.gui.submit_fit_array(data)
-        print(f"fit submited with {data}")
-        # self.flomni.flomnigui_show_xeyealign_fittab()

csaxs_bec/bec_ipython_client/plugins/omny/gui_tools.py

@@ -1,5 +1,7 @@
 import builtins
 
+from bec_widgets.cli.client import BECDockArea
+
 # from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
 
 if builtins.__dict__.get("bec") is not None:
@@ -19,7 +21,7 @@ class OMNYGuiTools:
 
     def __init__(self, client):
         self.gui = getattr(client, "gui", None)
-        self.gui_window = self.gui.windows["main"].widget
+        self.gui_window = self.gui.windows['main'].widget
         self.fig200 = None
         self.fig201 = None
         self.fig202 = None
@@ -81,16 +83,12 @@ class OMNYGuiTools:
                 pass
         text = (
             "<pre>"
-            + "    ,o888888o.           ,8.       ,8.          b.             8 `8.`8888.      ,8' \n"
+            + "██████╗ ███████╗ ██████╗      ██████╗ ███╗   ███╗███╗   ██╗██╗   ██╗\n"
-            + " . 8888     `88.        ,888.     ,888.         888o.          8  `8.`8888.    ,8'  \n"
+            + "██╔══██╗██╔════╝██╔════╝     ██╔═══██╗████╗ ████║████╗  ██║╚██╗ ██╔╝\n"
-            + ",8 8888       `8b      .`8888.   .`8888.        Y88888o.       8   `8.`8888.  ,8'   \n"
+            + "██████╔╝█████╗  ██║          ██║   ██║██╔████╔██║██╔██╗ ██║ ╚████╔╝ \n"
-            + "88 8888        `8b    ,8.`8888. ,8.`8888.       .`Y888888o.    8    `8.`8888.,8'    \n"
+            + "██╔══██╗██╔══╝  ██║          ██║   ██║██║╚██╔╝██║██║╚██╗██║  ╚██╔╝  \n"
-            + "88 8888         88   ,8'8.`8888,8^8.`8888.      8o. `Y888888o. 8     `8.`88888'     \n"
+            + "██████╔╝███████╗╚██████╗     ╚██████╔╝██║ ╚═╝ ██║██║ ╚████║   ██║   \n"
-            + "88 8888         88  ,8' `8.`8888' `8.`8888.     8`Y8o. `Y88888o8      `8. 8888      \n"
+            + "╚═════╝ ╚══════╝ ╚═════╝      ╚═════╝ ╚═╝     ╚═╝╚═╝  ╚═══╝   ╚═╝   \n"
-            + "88 8888        ,8P ,8'   `8.`88'   `8.`8888.    8   `Y8o. `Y8888       `8 8888      \n"
-            + "`8 8888       ,8P ,8'     `8.`'     `8.`8888.   8      `Y8o. `Y8        8 8888      \n"
-            + " ` 8888     ,88' ,8'       `8        `8.`8888.  8         `Y8o.`        8 8888      \n"
-            + "    `8888888P'  ,8'         `         `8.`8888. 8            `Yo        8 8888      \n"
             + "</pre>"
         )
         self.idle_text_box.set_html_text(text)
@@ -137,9 +135,7 @@ class OMNYGuiTools:
         if self.progressbar is None:
             self.omnygui_remove_all_docks()
             # Add a new dock with a RingProgressBar widget
-            self.progressbar = self.gui_window.add_dock(name="progress").add_widget(
+            self.progressbar = self.gui_window.add_dock(name="progress").add_widget("RingProgressBar")
-                "RingProgressBar"
-            )
             # Customize the size of the progress ring
             self.progressbar.set_line_widths(20)
             # Disable automatic updates and manually set the self.progressbar value

csaxs_bec/bec_ipython_client/plugins/omny/omny_general_tools.py

@@ -1,23 +1,29 @@
-import time
+import builtins
-import numpy as np
+import datetime
-import sys
-import termios
-import tty
 import fcntl
 import os
-import builtins
+import subprocess
+import sys
+import termios
+import threading
+import time
+import tty
+from pathlib import Path
 
+import numpy as np
+from bec_lib import bec_logger
 from rich import box
 from rich.console import Console
 from rich.table import Table
 
-# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+logger = bec_logger.logger
 
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
     scans = builtins.__dict__.get("scans")
 
+
 def umv(*args):
     return scans.umv(*args, relative=False)
 
@@ -110,24 +116,20 @@ class OMNYTools:
                         next1, next2 = sys.stdin.read(2)
                         if next1 == "[":
                             if next2 == "A":
-                                # print("up")
                                 if dev2 != "none":
                                     umvr(dev2, step2)
                                     if special_command != "none":
                                         special_command()
                             elif next2 == "B":
-                                # print(" down")
                                 if dev2 != "none":
                                     umvr(dev2, -step2)
                                     if special_command != "none":
                                         special_command()
                             elif next2 == "C":
-                                # print("right")
                                 umvr(dev1, step1)
                                 if special_command != "none":
                                     special_command()
                             elif next2 == "D":
-                                # print("left")
                                 umvr(dev1, -step1)
                                 if special_command != "none":
                                     special_command()
@@ -143,13 +145,324 @@ class OMNYTools:
                             step2 = step2 / 2
                         print(f"\rHalf step size. New step size: {step1}, {step2}\r")
                 except IOError:
-                    # No input available, keep looping
                     pass
 
-                # Sleep for a short period to avoid high CPU usage
                 time.sleep(0.02)
 
         finally:
             # Restore the terminal to its original state
             termios.tcsetattr(fd, termios.TCSADRAIN, old_term)
             fcntl.fcntl(fd, fcntl.F_SETFL, old_flags)
+
+import socket
+
+class BeamlineChecker:
+    """Monitors beamline health during scans.
+
+    Runs checks in a background thread and blocks scan progress
+    until beam conditions are restored if they fail.
+
+    Usage:
+        checker = BeamlineChecker(client)
+        checker._bl_chk_start()
+        # ... run scan ...
+        beam_was_ok = checker._bl_chk_stop()
+        if not beam_was_ok:
+            checker._bl_chk_wait_until_recovered()
+    """
+
+    def __init__(self, client):
+        self.client = client
+        self.check_shutter = True
+        self.check_light_available = True
+        self.check_fofb = True
+        self._beam_is_okay = True
+        self._stop_event = None
+        self._thread = None
+        self._local_network_warned = False
+        self._check_msgs = []
+
+    # ------------------------------------------------------------------
+    # Public control interface
+    # ------------------------------------------------------------------
+
+    def bl_chk_status(self):
+        """Print and return the current enabled/disabled state of all checks."""
+        if self._is_local_network():
+            print("Beamline checks cannot be performed on this network (129.129.98.x) — skipping.")
+            return {}
+        status = {
+            "shutter": self.check_shutter,
+            "fofb": self.check_fofb,
+            "light available": self.check_light_available,
+        }
+        print(
+            f"Shutter: {self.check_shutter}\n"
+            f"FOFB: {self.check_fofb}\n"
+            f"Light available: {self.check_light_available}"
+        )
+        return status
+
+    def bl_chk_enable_all(self):
+        """Enable all beamline checks."""
+        self.check_shutter = True
+        self.check_light_available = True
+        self.check_fofb = True
+        self.bl_chk_status()
+
+    def bl_chk_disable_all(self):
+        """Disable all beamline checks."""
+        self.check_shutter = False
+        self.check_light_available = False
+        self.check_fofb = False
+        self.bl_chk_status()
+
+    def bl_chk_enable_shutter(self):
+        """Enable the shutter check."""
+        self.check_shutter = True
+        self.bl_chk_status()
+
+    def bl_chk_disable_shutter(self):
+        """Disable the shutter check."""
+        self.check_shutter = False
+        self.bl_chk_status()
+
+    def bl_chk_enable_fofb(self):
+        """Enable the fast orbit feedback check."""
+        self.check_fofb = True
+        self.bl_chk_status()
+
+    def bl_chk_disable_fofb(self):
+        """Disable the fast orbit feedback check."""
+        self.check_fofb = False
+        self.bl_chk_status()
+
+    def bl_chk_enable_light(self):
+        """Enable the light available check."""
+        self.check_light_available = True
+        self.bl_chk_status()
+
+    def bl_chk_disable_light(self):
+        """Disable the light available check."""
+        self.check_light_available = False
+        self.bl_chk_status()
+
+    def _bl_chk_start(self):
+        """Start the background beam check thread."""
+        self._beam_is_okay = True
+        self._stop_event = threading.Event()
+        self._thread = threading.Thread(target=self._poll, daemon=True)
+        self._thread.start()
+
+    def _bl_chk_stop(self) -> bool:
+        """Stop the background thread and return whether beam was okay throughout."""
+        self._stop_event.set()
+        self._thread.join()
+        return self._beam_is_okay
+
+    def _bl_chk_wait_until_recovered(self):
+        """Block until all beamline checks pass again, logging to SciLog."""
+        self._log_failure_to_scilog()
+        while True:
+            self._beam_is_okay = True
+            self._check_msgs = self._run_checks()
+            if self._beam_is_okay:
+                break
+            self._print_msgs()
+            time.sleep(1)
+        self._log_recovery_to_scilog()
+
+    # ------------------------------------------------------------------
+    # Internal
+    # ------------------------------------------------------------------
+
+    def _is_local_network(self) -> bool:
+        """Return True if running on the 129.129.98.x subnet."""
+        try:
+            hostname = socket.gethostname()
+            ip = socket.gethostbyname(hostname)
+            return ip.startswith("129.129.98.")
+        except Exception:
+            return False
+
+    def _run_checks(self) -> list:
+        if self._is_local_network():
+            if not self._local_network_warned:
+                print("Beamline checks cannot be performed on this network (129.129.98.x) — skipping.")
+                self._local_network_warned = True
+            return []
+        msgs = []
+        dev = builtins.__dict__.get("dev")
+        try:
+            if self.check_shutter:
+                val = dev.x12sa_es1_shutter_status.read(cached=True)
+                if val["value"].lower() != "open":
+                    self._beam_is_okay = False
+                    msgs.append("Check beam failed: Shutter is closed.")
+            if self.check_light_available:
+                val = dev.sls_machine_status.read(cached=True)
+                if val["value"] not in ["Light Available", "Light-Available"]:
+                    self._beam_is_okay = False
+                    msgs.append("Check beam failed: Light not available.")
+            if self.check_fofb:
+                val = dev.sls_fast_orbit_feedback.read(cached=True)
+                if val["value"] != "running":
+                    self._beam_is_okay = False
+                    msgs.append("Check beam failed: Fast orbit feedback is not running.")
+        except Exception:
+            logger.warning("Failed to check beam.")
+        return msgs
+
+    def _poll(self):
+        while not self._stop_event.is_set():
+            self._check_msgs = self._run_checks()
+            if not self._beam_is_okay:
+                self._stop_event.set()
+            time.sleep(1)
+
+    def _print_msgs(self):
+        for msg in self._check_msgs:
+            logger.warning(msg)
+
+    def _log_failure_to_scilog(self):
+        self._print_msgs()
+        try:
+            bec = builtins.__dict__.get("bec")
+            msg = bec.logbook.LogbookMessage()
+            msg.add_text(
+                "<p><mark class='pen-red'><strong>Beamline checks failed at"
+                f" {str(datetime.datetime.now())}: {''.join(self._check_msgs)}</strong></mark></p>"
+            ).add_tag(["BEC", "beam_check"])
+            self.client.logbook.send_logbook_message(msg)
+        except Exception:
+            logger.warning("Failed to send beam failure update to SciLog.")
+
+    def _log_recovery_to_scilog(self):
+        try:
+            bec = builtins.__dict__.get("bec")
+            msg = bec.logbook.LogbookMessage()
+            msg.add_text(
+                "<p><mark class='pen-red'><strong>Operation resumed at"
+                f" {str(datetime.datetime.now())}.</strong></mark></p>"
+            ).add_tag(["BEC", "beam_check"])
+            self.client.logbook.send_logbook_message(msg)
+        except Exception:
+            logger.warning("Failed to send beam recovery update to SciLog.")
+
+class PtychoReconstructor:
+    """Writes ptychography reconstruction queue files after each scan projection.
+
+    An external reconstruction engine monitors the queue folder and picks
+    up .dat files as they are written.
+
+    Usage:
+        reconstructor = PtychoReconstructor(folder_name="reconstruction_queue")
+        reconstructor.write(
+            scan_list=[1023, 1024],
+            next_scan_number=1025,
+            base_path="~/data/raw",
+        )
+    """
+
+    def __init__(self, folder_name: str = "reconstruction_queue"):
+        self.folder_name = folder_name
+
+    def _accounts_match(self) -> bool:
+        """Check if bec.active_account matches the current system user (p vs e prefix)."""
+        try:
+            bec = builtins.__dict__.get("bec")
+            active = bec.active_account  # e.g. "p23092"
+            system_user = os.getenv("USER") or os.getlogin()  # e.g. "e23092"
+            print(f"Active server account {active}, BEC client account {system_user}.")
+            return active[1:] == system_user[1:]
+        except Exception:
+            logger.warning("Failed to compare active account to system user.")
+            return False
+
+    def write(self, scan_list: list, next_scan_number: int, base_path: str = "~/data/raw/analysis/"):
+        """Write a reconstruction queue file for the given scan list.
+
+        Args:
+            scan_list (list): Scan numbers belonging to this projection
+                              (may contain multiple entries when stitching).
+            next_scan_number (int): The current next scan number, used to
+                                    name the queue file.
+            base_path (str): Root path under which the queue folder lives.
+        """
+        base_path = os.path.expanduser(base_path)
+        queue_path = Path(os.path.join(base_path, self.folder_name))
+        queue_path.mkdir(parents=True, exist_ok=True)
+
+        last_scan_number = next_scan_number - 1
+        queue_file = os.path.abspath(
+            os.path.join(queue_path, f"scan_{last_scan_number:05d}.dat")
+        )
+        with open(queue_file, "w") as f:
+            scans = " ".join(str(s) for s in scan_list)
+            f.write(f"p.scan_number {scans}\n")
+            f.write("p.check_nextscan_started 1\n")
+
+
+class TomoIDManager:
+    """Registers a tomography measurement in the OMNY sample database
+    and returns its assigned tomo ID.
+
+    Usage:
+        id_manager = TomoIDManager()
+        tomo_id = id_manager.register(
+            sample_name="my_sample",
+            date="2024-03-08",
+            eaccount="e12345",
+            scan_number=1001,
+            setup="lamni",
+            additional_info="test info",
+            user="BEC",
+        )
+    """
+
+    OMNY_URL = "https://omny.web.psi.ch/samples/newmeasurement.php"
+    OMNY_USER = "omny"
+    OMNY_PASSWORD = "samples"
+    TMP_FILE = "/tmp/currsamplesnr.txt"
+
+    def register(
+        self,
+        sample_name: str,
+        date: str,
+        eaccount: str,
+        scan_number: int,
+        setup: str,
+        additional_info: str,
+        user: str,
+    ) -> int:
+        """Register a new measurement and return the assigned tomo ID.
+
+        Args:
+            sample_name (str): Name of the sample.
+            date (str): Date string (e.g. "2024-03-08").
+            eaccount (str): E-account identifier.
+            scan_number (int): First scan number of the measurement.
+            setup (str): Setup name (e.g. "lamni").
+            additional_info (str): Any additional sample information.
+            user (str): User name.
+
+        Returns:
+            int: The tomo ID assigned by the OMNY database.
+        """
+        url = (
+            f"{self.OMNY_URL}"
+            f"?sample={sample_name}"
+            f"&date={date}"
+            f"&eaccount={eaccount}"
+            f"&scannr={scan_number}"
+            f"&setup={setup}"
+            f"&additional={additional_info}"
+            f"&user={user}"
+        )
+        subprocess.run(
+            f"wget --user={self.OMNY_USER} --password={self.OMNY_PASSWORD}"
+            f" -q -O {self.TMP_FILE} '{url}'",
+            shell=True,
+        )
+        with open(self.TMP_FILE) as f:
+            return int(f.read())

csaxs_bec/bec_ipython_client/startup/post_startup.py

@@ -111,3 +111,34 @@ bec._beamline_mixin._bl_info_register(OperatorInfo)
 # SETUP PROMPTS
 bec._ip.prompts.session_name = _session_name
 bec._ip.prompts.status = 1
+
+# ACCOUNT MISMATCH CHECK
+import os
+
+def _check_account_mismatch():
+    try:
+        active = bec.active_account  # e.g. "p23092"
+        system_user = os.getenv("USER") or os.getlogin()  # e.g. "e23092"
+        if active[1:] != system_user[1:]:
+            print(f"""
+\033[91m\033[1m
+    ██╗    ██╗ █████╗ ██████╗ ███╗   ██╗██╗███╗   ██╗ ██████╗ 
+    ██║    ██║██╔══██╗██╔══██╗████╗  ██║██║████╗  ██║██╔════╝ 
+    ██║ █╗ ██║███████║██████╔╝██╔██╗ ██║██║██╔██╗ ██║██║  ███╗
+    ██║███╗██║██╔══██║██╔══██╗██║╚██╗██║██║██║╚██╗██║██║   ██║
+    ╚███╔███╔╝██║  ██║██║  ██║██║ ╚████║██║██║ ╚████║╚██████╔╝
+    ╚══╝╚══╝ ╚═╝  ╚═╝╚═╝  ╚═╝╚═╝  ╚═══╝╚═╝╚═╝  ╚═══╝ ╚═════╝ 
+
+    ACCOUNT MISMATCH DETECTED!
+    BEC active account : {active}
+    System user        : {system_user}
+
+    Data read and written by the BEC client does not match the data account!
+    Please verify you are logged in with the correct account.
+\033[0m""")
+    except Exception:
+        logger.warning("Failed to verify account match.")
+
+
+if _args.session.lower() == "lamni" or _args.session.lower() == "flomni" or _args.session.lower() == "omny":
+    _check_account_mismatch()

csaxs_bec/bec_widgets/widgets/client.py

@@ -13,15 +13,24 @@ logger = bec_logger.logger
 
 
 _Widgets = {
+    "OmnyAlignment": "OmnyAlignment",
     "XRayEye": "XRayEye",
 }
 
 
-class XRayEye(RPCBase):
+class OmnyAlignment(RPCBase):
+    @property
     @rpc_call
-    def active_roi(self) -> "BaseROI | None":
+    def enable_live_view(self):
         """
-        Return the currently active ROI, or None if no ROI is active.
+        None
+        """
+
+    @enable_live_view.setter
+    @rpc_call
+    def enable_live_view(self):
+        """
+        None
         """
 
     @property
@@ -38,30 +47,6 @@ class XRayEye(RPCBase):
         None
         """
 
-    @rpc_call
-    def on_live_view_enabled(self, enabled: "bool"):
-        """
-        None
-        """
-
-    @rpc_call
-    def on_motors_enable(self, x_enable: "bool", y_enable: "bool"):
-        """
-        Enable/Disable motor controls
-
-        Args:
-            x_enable(bool): enable x motor controls
-            y_enable(bool): enable y motor controls
-        """
-
-    @rpc_call
-    def enable_submit_button(self, enable: "bool"):
-        """
-        Enable/disable submit button.
-        Args:
-            enable(int): -1 disable else enable
-        """
-
     @property
     @rpc_call
     def sample_name(self):
@@ -90,14 +75,66 @@ class XRayEye(RPCBase):
         None
         """
 
+
+class XRayEye(RPCBase):
     @rpc_call
-    def switch_tab(self, tab: "str"):
+    def active_roi(self) -> "BaseROI | None":
+        """
+        Return the currently active ROI, or None if no ROI is active.
+        """
+
+    @property
+    @rpc_call
+    def enable_live_view(self):
+        """
+        Get or set the live view enabled state.
+        """
+
+    @enable_live_view.setter
+    @rpc_call
+    def enable_live_view(self):
+        """
+        Get or set the live view enabled state.
+        """
+
+    @property
+    @rpc_call
+    def user_message(self):
         """
         None
         """
 
+    @user_message.setter
     @rpc_call
-    def submit_fit_array(self, fit_array):
+    def user_message(self):
+        """
+        None
+        """
+
+    @property
+    @rpc_call
+    def sample_name(self):
+        """
+        None
+        """
+
+    @sample_name.setter
+    @rpc_call
+    def sample_name(self):
+        """
+        None
+        """
+
+    @property
+    @rpc_call
+    def enable_move_buttons(self):
+        """
+        None
+        """
+
+    @enable_move_buttons.setter
+    @rpc_call
+    def enable_move_buttons(self):
         """
         None
         """
@@ -109,15 +146,3 @@ class XRayEye2DControl(RPCBase):
         """
         Cleanup the BECConnector
         """
-
-    @rpc_call
-    def attach(self):
-        """
-        None
-        """
-
-    @rpc_call
-    def detach(self):
-        """
-        Detach the widget from its parent dock widget (if widget is in the dock), making it a floating widget.
-        """

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.py

@@ -0,0 +1,140 @@
+
+
+from typing import TypedDict
+from bec_widgets.utils.error_popups import SafeSlot
+import os
+from bec_widgets.utils.bec_widget import BECWidget
+from bec_widgets.utils.ui_loader import UILoader
+from qtpy.QtWidgets import QWidget, QPushButton, QLineEdit, QLabel, QVBoxLayout
+from bec_qthemes import material_icon
+from bec_lib.logger import bec_logger
+
+logger = bec_logger.logger 
+
+
+# class OmnyAlignmentUIComponents(TypedDict):
+#     moveRightButton: QPushButton
+#     moveLeftButton: QPushButton
+#     moveUpButton: QPushButton
+#     moveDownButton: QPushButton
+#     image: Image
+
+
+class OmnyAlignment(BECWidget, QWidget):
+    USER_ACCESS = ["enable_live_view", "enable_live_view.setter", "user_message", "user_message.setter","sample_name", "sample_name.setter", "enable_move_buttons", "enable_move_buttons.setter"]
+    PLUGIN = True
+    ui_file = "./omny_alignment.ui"
+
+    def __init__(self, parent=None, **kwargs):
+        super().__init__(parent=parent, **kwargs)
+        
+        self._load_ui()
+
+    def _load_ui(self):
+        current_path = os.path.dirname(__file__)
+        self.ui = UILoader(self).loader(os.path.join(current_path, self.ui_file))
+        layout = QVBoxLayout()
+        layout.addWidget(self.ui)
+        self.setLayout(layout)
+
+        icon_options = {"size": (16, 16), "convert_to_pixmap": False}
+        self.ui.moveRightButton.setText("")
+        self.ui.moveRightButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_right", **icon_options)
+        )
+
+        self.ui.moveLeftButton.setText("")
+        self.ui.moveLeftButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_left", **icon_options)
+        )
+
+        self.ui.moveUpButton.setText("")
+        self.ui.moveUpButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_up", **icon_options)
+        )
+
+        self.ui.moveDownButton.setText("")
+        self.ui.moveDownButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_down", **icon_options)
+        )
+
+        self.ui.confirmButton.setText("OK")
+
+
+        self.ui.liveViewSwitch.enabled.connect(self.on_live_view_enabled)
+
+        # self.ui.moveUpButton.clicked.connect(self.on_move_up)
+
+
+    @property
+    def enable_live_view(self):
+        return self.ui.liveViewSwitch.checked
+    
+    @enable_live_view.setter
+    def enable_live_view(self, enable:bool):
+        self.ui.liveViewSwitch.checked = enable
+
+
+    @property
+    def user_message(self):
+        return self.ui.messageLineEdit.text()
+    
+    @user_message.setter
+    def user_message(self, message:str):
+        self.ui.messageLineEdit.setText(message)
+
+    @property
+    def sample_name(self):
+        return self.ui.sampleLineEdit.text()
+    
+    @sample_name.setter
+    def sample_name(self, message:str):
+        self.ui.sampleLineEdit.setText(message)
+
+
+    @SafeSlot(bool)
+    def on_live_view_enabled(self, enabled:bool):
+        from bec_widgets.widgets.plots.image.image import Image
+        logger.info(f"Live view is enabled: {enabled}")
+        image: Image = self.ui.image
+        if enabled:
+            image.image("cam_xeye")
+            return
+        
+        image.disconnect_monitor("cam_xeye")
+
+
+    @property
+    def enable_move_buttons(self):
+        move_up:QPushButton = self.ui.moveUpButton
+        move_down:QPushButton = self.ui.moveDownButton
+        move_left:QPushButton = self.ui.moveLeftButton
+        move_right:QPushButton = self.ui.moveRightButton
+        return move_up.isEnabled() and move_down.isEnabled() and move_left.isEnabled() and move_right.isEnabled()
+    
+    @enable_move_buttons.setter
+    def enable_move_buttons(self, enabled:bool):
+        move_up:QPushButton = self.ui.moveUpButton
+        move_down:QPushButton = self.ui.moveDownButton
+        move_left:QPushButton = self.ui.moveLeftButton
+        move_right:QPushButton = self.ui.moveRightButton
+
+        move_up.setEnabled(enabled)
+        move_down.setEnabled(enabled)
+        move_left.setEnabled(enabled)
+        move_right.setEnabled(enabled)
+
+        
+
+
+
+
+if __name__ == "__main__":
+    from qtpy.QtWidgets import QApplication
+    import sys
+
+    app = QApplication(sys.argv)
+    widget = OmnyAlignment()
+
+    widget.show()
+    sys.exit(app.exec_())

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.pyproject

@@ -0,0 +1 @@
+{'files': ['omny_alignment.py']}

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.ui

@@ -0,0 +1,125 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>Form</class>
+ <widget class="QWidget" name="Form">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>988</width>
+    <height>821</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>Form</string>
+  </property>
+  <layout class="QGridLayout" name="gridLayout_3">
+   <item row="2" column="2">
+    <layout class="QGridLayout" name="gridLayout">
+     <item row="1" column="2">
+      <widget class="QPushButton" name="moveRightButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+     <item row="1" column="0">
+      <widget class="QPushButton" name="moveLeftButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+     <item row="0" column="1">
+      <widget class="QPushButton" name="moveUpButton">
+       <property name="text">
+        <string>Up</string>
+       </property>
+      </widget>
+     </item>
+     <item row="2" column="1">
+      <widget class="QPushButton" name="moveDownButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+     <item row="1" column="1">
+      <widget class="QPushButton" name="confirmButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+    </layout>
+   </item>
+   <item row="2" column="0">
+    <layout class="QGridLayout" name="gridLayout_2">
+     <item row="0" column="1">
+      <widget class="QLineEdit" name="sampleLineEdit"/>
+     </item>
+     <item row="1" column="1">
+      <widget class="QLineEdit" name="messageLineEdit"/>
+     </item>
+     <item row="0" column="0">
+      <widget class="QLabel" name="label">
+       <property name="text">
+        <string>Sample</string>
+       </property>
+      </widget>
+     </item>
+     <item row="1" column="0">
+      <widget class="QLabel" name="label_2">
+       <property name="text">
+        <string>Message</string>
+       </property>
+      </widget>
+     </item>
+    </layout>
+   </item>
+   <item row="1" column="0" colspan="3">
+    <widget class="Image" name="image">
+     <property name="enable_toolbar" stdset="0">
+      <bool>false</bool>
+     </property>
+     <property name="inner_axes" stdset="0">
+      <bool>false</bool>
+     </property>
+     <property name="monitor" stdset="0">
+      <string>cam_xeye</string>
+     </property>
+     <property name="rotation" stdset="0">
+      <number>3</number>
+     </property>
+    </widget>
+   </item>
+   <item row="0" column="3">
+    <widget class="ToggleSwitch" name="liveViewSwitch"/>
+   </item>
+   <item row="0" column="2">
+    <widget class="QLabel" name="label_3">
+     <property name="text">
+      <string>Live View</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignmentFlag::AlignRight|Qt::AlignmentFlag::AlignTrailing|Qt::AlignmentFlag::AlignVCenter</set>
+     </property>
+    </widget>
+   </item>
+  </layout>
+ </widget>
+ <customwidgets>
+  <customwidget>
+   <class>Image</class>
+   <extends>QWidget</extends>
+   <header>image</header>
+  </customwidget>
+  <customwidget>
+   <class>ToggleSwitch</class>
+   <extends>QWidget</extends>
+   <header>toggle_switch</header>
+  </customwidget>
+ </customwidgets>
+ <resources/>
+ <connections/>
+</ui>

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment_plugin.py

@@ -0,0 +1,54 @@
+# Copyright (C) 2022 The Qt Company Ltd.
+# SPDX-License-Identifier: LicenseRef-Qt-Commercial OR BSD-3-Clause
+
+from qtpy.QtDesigner import QDesignerCustomWidgetInterface
+
+from bec_widgets.utils.bec_designer import designer_material_icon
+from csaxs_bec.bec_widgets.widgets.omny_alignment.omny_alignment import OmnyAlignment
+
+DOM_XML = """
+<ui language='c++'>
+    <widget class='OmnyAlignment' name='omny_alignment'>
+    </widget>
+</ui>
+"""
+
+
+class OmnyAlignmentPlugin(QDesignerCustomWidgetInterface):  # pragma: no cover
+    def __init__(self):
+        super().__init__()
+        self._form_editor = None
+
+    def createWidget(self, parent):
+        t = OmnyAlignment(parent)
+        return t
+
+    def domXml(self):
+        return DOM_XML
+
+    def group(self):
+        return ""
+
+    def icon(self):
+        return designer_material_icon(OmnyAlignment.ICON_NAME)
+
+    def includeFile(self):
+        return "omny_alignment"
+
+    def initialize(self, form_editor):
+        self._form_editor = form_editor
+
+    def isContainer(self):
+        return False
+
+    def isInitialized(self):
+        return self._form_editor is not None
+
+    def name(self):
+        return "OmnyAlignment"
+
+    def toolTip(self):
+        return "OmnyAlignment"
+
+    def whatsThis(self):
+        return self.toolTip()

csaxs_bec/bec_widgets/widgets/omny_alignment/register_omny_alignment.py

@@ -0,0 +1,15 @@
+def main():  # pragma: no cover
+    from qtpy import PYSIDE6
+
+    if not PYSIDE6:
+        print("PYSIDE6 is not available in the environment. Cannot patch designer.")
+        return
+    from PySide6.QtDesigner import QPyDesignerCustomWidgetCollection
+
+    from csaxs_bec.bec_widgets.widgets.omny_alignment.omny_alignment_plugin import OmnyAlignmentPlugin
+
+    QPyDesignerCustomWidgetCollection.addCustomWidget(OmnyAlignmentPlugin())
+
+
+if __name__ == "__main__":  # pragma: no cover
+    main()

csaxs_bec/bec_widgets/widgets/xray_eye/x_ray_eye.py

@@ -5,7 +5,6 @@ from bec_lib.endpoints import MessageEndpoints
 from bec_qthemes import material_icon
 from bec_widgets import BECWidget, SafeProperty, SafeSlot
 from bec_widgets.widgets.plots.image.image import Image
-from bec_widgets.widgets.plots.waveform.waveform import Waveform
 from bec_widgets.widgets.plots.image.setting_widgets.image_roi_tree import ROIPropertyTree
 from bec_widgets.widgets.plots.roi.image_roi import BaseROI, CircularROI, RectangularROI
 from bec_widgets.widgets.utility.toggle.toggle import ToggleSwitch
@@ -22,10 +21,7 @@ from qtpy.QtWidgets import (
     QToolButton,
     QVBoxLayout,
     QWidget,
-    QTextEdit,
-    QTabWidget,
 )
-import time
 
 logger = bec_logger.logger
 CAMERA = ("cam_xeye", "image")
@@ -45,38 +41,38 @@ class XRayEye2DControl(BECWidget, QWidget):
         """)
         # Up
         self.move_up_button = QToolButton(parent=self)
-        self.move_up_button.setIcon(material_icon("keyboard_double_arrow_up"))
+        self.move_up_button.setIcon(material_icon('keyboard_double_arrow_up'))
         self.root_layout.addWidget(self.move_up_button, 0, 2)
         # Up tweak button
         self.move_up_tweak_button = QToolButton(parent=self)
-        self.move_up_tweak_button.setIcon(material_icon("keyboard_arrow_up"))
+        self.move_up_tweak_button.setIcon(material_icon('keyboard_arrow_up'))
         self.root_layout.addWidget(self.move_up_tweak_button, 1, 2)
 
         # Left
         self.move_left_button = QToolButton(parent=self)
-        self.move_left_button.setIcon(material_icon("keyboard_double_arrow_left"))
+        self.move_left_button.setIcon(material_icon('keyboard_double_arrow_left'))
         self.root_layout.addWidget(self.move_left_button, 2, 0)
         # Left tweak button
         self.move_left_tweak_button = QToolButton(parent=self)
-        self.move_left_tweak_button.setIcon(material_icon("keyboard_arrow_left"))
+        self.move_left_tweak_button.setIcon(material_icon('keyboard_arrow_left'))
         self.root_layout.addWidget(self.move_left_tweak_button, 2, 1)
 
         # Right
         self.move_right_button = QToolButton(parent=self)
-        self.move_right_button.setIcon(material_icon("keyboard_double_arrow_right"))
+        self.move_right_button.setIcon(material_icon('keyboard_double_arrow_right'))
         self.root_layout.addWidget(self.move_right_button, 2, 4)
         # Right tweak button
         self.move_right_tweak_button = QToolButton(parent=self)
-        self.move_right_tweak_button.setIcon(material_icon("keyboard_arrow_right"))
+        self.move_right_tweak_button.setIcon(material_icon('keyboard_arrow_right'))
         self.root_layout.addWidget(self.move_right_tweak_button, 2, 3)
 
         # Down
         self.move_down_button = QToolButton(parent=self)
-        self.move_down_button.setIcon(material_icon("keyboard_double_arrow_down"))
+        self.move_down_button.setIcon(material_icon('keyboard_double_arrow_down'))
         self.root_layout.addWidget(self.move_down_button, 4, 2)
         # Down tweak button
         self.move_down_tweak_button = QToolButton(parent=self)
-        self.move_down_tweak_button.setIcon(material_icon("keyboard_arrow_down"))
+        self.move_down_tweak_button.setIcon(material_icon('keyboard_arrow_down'))
         self.root_layout.addWidget(self.move_down_tweak_button, 3, 2)
 
         # Connections
@@ -128,20 +124,8 @@ class XRayEye2DControl(BECWidget, QWidget):
 
 
 class XRayEye(BECWidget, QWidget):
-    USER_ACCESS = [
+    USER_ACCESS = ["active_roi", "enable_live_view", "enable_live_view.setter", "user_message", "user_message.setter",
-        "active_roi",
+                   "sample_name", "sample_name.setter", "enable_move_buttons", "enable_move_buttons.setter"]
-        "user_message",
-        "user_message.setter",
-        "on_live_view_enabled",
-        "on_motors_enable",
-        "enable_submit_button",
-        "sample_name",
-        "sample_name.setter",
-        "enable_move_buttons",
-        "enable_move_buttons.setter",
-        "switch_tab",
-        "submit_fit_array",
-    ]
     PLUGIN = True
 
     def __init__(self, parent=None, **kwargs):
@@ -152,44 +136,28 @@ class XRayEye(BECWidget, QWidget):
         self._make_connections()
 
         # Connection to redis endpoints
-        self.bec_dispatcher.connect_slot(
+        self.bec_dispatcher.connect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
-            self.getting_shutter_status, MessageEndpoints.device_readback("omnyfsh")
-        )
-        self.bec_dispatcher.connect_slot(
-            self.getting_camera_status, MessageEndpoints.device_read_configuration(CAMERA[0])
-        )
-
         self.connect_motors()
         self.resize(800, 600)
         QTimer.singleShot(0, self._init_gui_trigger)
 
     def _init_ui(self):
-        self.root_layout = QVBoxLayout(self)
+        self.core_layout = QHBoxLayout(self)
-        self.tab_widget = QTabWidget(parent=self)
-        self.root_layout.addWidget(self.tab_widget)
 
-        self.alignment_tab = QWidget(parent=self)
+        self.image = Image(parent=self)
-        self.core_layout = QHBoxLayout(self.alignment_tab)
+        self.image.enable_toolbar = False  # Disable default toolbar to not allow to user set anything
-
-        self.image = Image(parent=self.alignment_tab)
-        self.image.color_map = "CET-L2"
-        self.image.enable_toolbar = (
-            False  # Disable default toolbar to not allow to user set anything
-        )
         self.image.inner_axes = False  # Disable inner axes to maximize image area
-        self.image.enable_full_colorbar = True
+        self.image.plot_item.vb.invertY(True)  # #TODO Invert y axis to match logic of LabView GUI
-        self.image.invert_y = True  # Invert y axis to match image coordinates
 
         # Control panel on the right: vertical layout inside a fixed-width widget
-        self.control_panel = QWidget(parent=self.alignment_tab)
+        self.control_panel = QWidget(parent=self)
         self.control_panel_layout = QVBoxLayout(self.control_panel)
         self.control_panel_layout.setContentsMargins(0, 0, 0, 0)
         self.control_panel_layout.setSpacing(10)
 
         # ROI toolbar + Live toggle (header row)
-        self.roi_manager = ROIPropertyTree(
+        self.roi_manager = ROIPropertyTree(parent=self, image_widget=self.image, compact=True,
-            parent=self, image_widget=self.image, compact=True, compact_orientation="horizontal"
+                                           compact_orientation="horizontal")
-        )
         header_row = QHBoxLayout()
         header_row.setContentsMargins(0, 0, 0, 0)
         header_row.setSpacing(8)
@@ -198,36 +166,16 @@ class XRayEye(BECWidget, QWidget):
         self.live_preview_label = QLabel("Live Preview", parent=self)
         self.live_preview_toggle = ToggleSwitch(parent=self)
         self.live_preview_toggle.checked = False
-        header_row.addWidget(self.live_preview_label, 0, Qt.AlignmentFlag.AlignVCenter)
+        header_row.addWidget(self.live_preview_label, 0, Qt.AlignVCenter)
-        header_row.addWidget(self.live_preview_toggle, 0, Qt.AlignmentFlag.AlignVCenter)
+        header_row.addWidget(self.live_preview_toggle, 0, Qt.AlignVCenter)
         self.control_panel_layout.addLayout(header_row)
 
-        switch_row = QHBoxLayout()
-        switch_row.setContentsMargins(0, 0, 0, 0)
-        switch_row.setSpacing(8)
-        switch_row.addStretch()
-        self.camera_running_label = QLabel("Camera running", parent=self)
-        self.camera_running_toggle = ToggleSwitch(parent=self)
-        # self.camera_running_toggle.checked = False
-        self.camera_running_toggle.enabled.connect(self.camera_running_enabled)
-        self.shutter_label = QLabel("Shutter open", parent=self)
-        self.shutter_toggle = ToggleSwitch(parent=self)
-        # self.shutter_toggle.checked = False
-        self.shutter_toggle.enabled.connect(self.opening_shutter)
-        switch_row.addWidget(self.shutter_label, 0, Qt.AlignmentFlag.AlignVCenter)
-        switch_row.addWidget(self.shutter_toggle, 0, Qt.AlignmentFlag.AlignVCenter)
-        switch_row.addWidget(self.camera_running_label, 0, Qt.AlignmentFlag.AlignVCenter)
-        switch_row.addWidget(self.camera_running_toggle, 0, Qt.AlignmentFlag.AlignVCenter)
-        self.control_panel_layout.addLayout(switch_row)
-
         # separator
         self.control_panel_layout.addWidget(self._create_separator())
 
         # 2D Positioner (fixed size)
         self.motor_control_2d = XRayEye2DControl(parent=self)
-        self.control_panel_layout.addWidget(
+        self.control_panel_layout.addWidget(self.motor_control_2d, 0, Qt.AlignTop | Qt.AlignCenter)
-            self.motor_control_2d, 0, Qt.AlignmentFlag.AlignTop | Qt.AlignmentFlag.AlignCenter
-        )
 
         # separator
         self.control_panel_layout.addWidget(self._create_separator())
@@ -242,8 +190,9 @@ class XRayEye(BECWidget, QWidget):
         # Submit button
         self.submit_button = QPushButton("Submit", parent=self)
         # Add to layout form
-        step_size_form.addWidget(QLabel("Step Size", parent=self), 0, 0)
+        step_size_form.addWidget(QLabel("Horizontal", parent=self), 0, 0)
         step_size_form.addWidget(self.step_size, 0, 1)
+        step_size_form.addWidget(QLabel("Vertical", parent=self), 1, 0)
         step_size_form.addWidget(self.submit_button, 2, 0, 1, 2)
 
         # Add form to control panel
@@ -258,8 +207,7 @@ class XRayEye(BECWidget, QWidget):
         self.sample_name_line_edit.setReadOnly(True)
         form.addWidget(QLabel("Sample", parent=self), 0, 0)
         form.addWidget(self.sample_name_line_edit, 0, 1)
-        self.message_line_edit = QTextEdit(parent=self)
+        self.message_line_edit = QLineEdit(parent=self)
-        self.message_line_edit.setFixedHeight(60)
         self.message_line_edit.setReadOnly(True)
         form.addWidget(QLabel("Message", parent=self), 1, 0)
         form.addWidget(self.message_line_edit, 1, 1)
@@ -269,57 +217,12 @@ class XRayEye(BECWidget, QWidget):
         self.control_panel.adjustSize()
         p_hint = self.control_panel.sizeHint()
         self.control_panel.setFixedWidth(p_hint.width())
-        self.control_panel.setSizePolicy(QSizePolicy.Policy.Fixed, QSizePolicy.Policy.Expanding)
+        self.control_panel.setSizePolicy(QSizePolicy.Fixed, QSizePolicy.Expanding)
 
         # Core Layout: image (expanding) | control panel (fixed)
         self.core_layout.addWidget(self.image)
         self.core_layout.addWidget(self.control_panel)
 
-        self.tab_widget.addTab(self.alignment_tab, "Alignment")
-
-        self.fit_tab = QWidget(parent=self)
-        self.fit_layout = QVBoxLayout(self.fit_tab)
-        self.waveform_x = Waveform(parent=self.fit_tab)
-        self.waveform_y = Waveform(parent=self.fit_tab)
-
-        self.waveform_x.plot(
-            x=[0],
-            y=[1],
-            label="fit-x",
-            dap=["SineModel", "LinearModel"],
-            dap_parameters=[
-                {"frequency": {"value": 0.0174533, "vary": False, "min": 0.01, "max": 0.02}},
-                {"slope": {"value": 0, "vary": False, "min": 0.0, "max": 0.02}},
-            ],
-            dap_oversample=5,
-        )
-        self.waveform_y.plot(
-            x=[0],
-            y=[2],
-            label="fit-y",
-            dap=["SineModel", "LinearModel"],
-            dap_parameters=[
-                {"frequency": {"value": 0.0174533, "vary": False, "min": 0.01, "max": 0.02}},
-                {"slope": {"value": 0, "vary": False, "min": 0.0, "max": 0.02}},
-            ],
-            dap_oversample=5,
-        )
-        self.fit_x = self.waveform_x.curves[0]
-        self.fit_y = self.waveform_y.curves[0]
-
-        self.waveform_x.dap_params_update.connect(self.on_dap_params)
-        self.waveform_y.dap_params_update.connect(self.on_dap_params)
-
-        for wave in (self.waveform_x, self.waveform_y):
-            wave.x_label = "Angle (deg)"
-            wave.x_grid = True
-            wave.y_grid = True
-            wave.enable_toolbar = True
-
-        self.fit_layout.addWidget(self.waveform_x)
-        self.fit_layout.addWidget(self.waveform_y)
-        self.tab_widget.addTab(self.fit_tab, "Fit")
-
     def _make_connections(self):
         # Fetch initial state
         self.on_live_view_enabled(True)
@@ -327,36 +230,31 @@ class XRayEye(BECWidget, QWidget):
 
         # Make connections
         self.live_preview_toggle.enabled.connect(self.on_live_view_enabled)
-        self.step_size.valueChanged.connect(
+        self.step_size.valueChanged.connect(lambda x: self.motor_control_2d.setProperty("step_size", x))
-            lambda x: self.motor_control_2d.setProperty("step_size", x)
-        )
         self.submit_button.clicked.connect(self.submit)
 
     def _create_separator(self):
         sep = QFrame(parent=self)
-        sep.setFrameShape(QFrame.Shape.HLine)
+        sep.setFrameShape(QFrame.HLine)
-        sep.setFrameShadow(QFrame.Shadow.Sunken)
+        sep.setFrameShadow(QFrame.Sunken)
         sep.setLineWidth(1)
         return sep
 
     def _init_gui_trigger(self):
         self.dev.omny_xray_gui.read()
-        self.dev.omnyfsh.read()
 
     ################################################################################
     # Device Connection logic
     ################################################################################
 
     def connect_motors(self):
-        """Checks one of the possible motors for flomni, omny and lamni setup."""
+        """ Checks one of the possible motors for flomni, omny and lamni setup."""
-        possible_motors = ["osamroy", "lsamrot", "fsamroy"]
+        possible_motors = ['osamroy', 'lsamrot', 'fsamroy']
 
         for motor in possible_motors:
             if motor in self.dev:
-                self.bec_dispatcher.connect_slot(
+                self.bec_dispatcher.connect_slot(self.on_tomo_angle_readback, MessageEndpoints.device_readback(motor))
-                    self.on_tomo_angle_readback, MessageEndpoints.device_readback(motor)
+                logger.info(f"Succesfully connected to {motor}")
-                )
-                logger.info(f"Successfully connected to {motor}")
 
     ################################################################################
     # Properties ported from the original OmnyAlignment, can be adjusted as needed
@@ -393,13 +291,6 @@ class XRayEye(BECWidget, QWidget):
     # Slots ported from the original OmnyAlignment, can be adjusted as needed
     ################################################################################
 
-    @SafeSlot(str)
-    def switch_tab(self, tab: str):
-        if tab == "fit":
-            self.tab_widget.setCurrentIndex(1)
-        else:
-            self.tab_widget.setCurrentIndex(0)
-
     @SafeSlot()
     def get_roi_coordinates(self) -> dict | None:
         """Get the coordinates of the currently active ROI."""
@@ -416,48 +307,14 @@ class XRayEye(BECWidget, QWidget):
         self.live_preview_toggle.blockSignals(True)
         if enabled:
             self.live_preview_toggle.checked = enabled
-            self.image.image(device=CAMERA[0], signal=CAMERA[1])
+            self.image.image(CAMERA)
             self.live_preview_toggle.blockSignals(False)
             return
 
-        self.image.disconnect_monitor(CAMERA[0], CAMERA[1])
+        self.image.disconnect_monitor(CAMERA)
         self.live_preview_toggle.checked = enabled
         self.live_preview_toggle.blockSignals(False)
 
-    @SafeSlot(bool)
-    def camera_running_enabled(self, enabled: bool):
-        logger.info(f"Camera running: {enabled}")
-        self.camera_running_toggle.blockSignals(True)
-        self.dev.get(CAMERA[0]).live_mode_enabled.put(enabled)
-        self.camera_running_toggle.checked = enabled
-        self.camera_running_toggle.blockSignals(False)
-
-    @SafeSlot(dict, dict)
-    def getting_camera_status(self, data, meta):
-        print(f"msg:{data}")
-        live_mode_enabled = data.get("signals").get(f"{CAMERA[0]}_live_mode_enabled").get("value")
-        self.camera_running_toggle.blockSignals(True)
-        self.camera_running_toggle.checked = live_mode_enabled
-        self.camera_running_toggle.blockSignals(False)
-
-    @SafeSlot(bool)
-    def opening_shutter(self, enabled: bool):
-        logger.info(f"Shutter changed from GUI to: {enabled}")
-        self.shutter_toggle.blockSignals(True)
-        if enabled:
-            self.dev.omnyfsh.fshopen()
-        else:
-            self.dev.omnyfsh.fshclose()
-        # self.shutter_toggle.checked = enabled
-        self.shutter_toggle.blockSignals(False)
-
-    @SafeSlot(dict, dict)
-    def getting_shutter_status(self, data, meta):
-        shutter_open = bool(data.get("signals").get("omnyfsh_shutter").get("value"))
-        self.shutter_toggle.blockSignals(True)
-        self.shutter_toggle.checked = shutter_open
-        self.shutter_toggle.blockSignals(False)
-
     @SafeSlot(bool, bool)
     def on_motors_enable(self, x_enable: bool, y_enable: bool):
         """
@@ -470,108 +327,98 @@ class XRayEye(BECWidget, QWidget):
         self.motor_control_2d.enable_controls_hor(x_enable)
         self.motor_control_2d.enable_controls_ver(y_enable)
 
-    @SafeSlot(bool)
+    @SafeSlot(int)
-    def enable_submit_button(self, enable: bool):
+    def enable_submit_button(self, enable: int):
         """
         Enable/disable submit button.
         Args:
             enable(int): -1 disable else enable
         """
-        if enable:
+        if enable == -1:
-            self.submit_button.setEnabled(True)
-        else:
             self.submit_button.setEnabled(False)
-
-    @SafeSlot(dict, dict)
-    def on_dap_params(self, data, meta):
-        print("#######################################")
-        print("getting dap parameters")
-        print(f"data: {data}")
-        print(f"meta: {meta}")
-        self.waveform_x.auto_range(True)
-        self.waveform_y.auto_range(True)
-        # self.bec_dispatcher.disconnect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
-        curve_id = meta.get("curve_id")
-
-        if curve_id == "fit-x-SineModel+LinearModel":
-            self.dev.omny_xray_gui.fit_params_x.set(data).wait()
-            print(f"setting x data to {data}")
         else:
-            self.dev.omny_xray_gui.fit_params_y.set(data).wait()
+            self.submit_button.setEnabled(True)
-            print(f"setting y data to {data}")
-        # self.bec_dispatcher.connect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
 
     @SafeSlot(bool, bool)
     def on_tomo_angle_readback(self, data: dict, meta: dict):
-        # TODO implement if needed
+        #TODO implement if needed
         print(f"data: {data}")
         print(f"meta: {meta}")
 
-    @SafeSlot()
+    @SafeSlot(dict, dict)
-    def submit_fit_array(self, fit_array):
+    def device_updates(self, data: dict, meta: dict):
-        self.tab_widget.setCurrentIndex(1)
+        """
-        # self.fix_x.title = " got fit array"
+        Slot to handle device updates from omny_xray_gui device.
-        print(f"got fit array {fit_array}")
+
-        self.waveform_x.curves[0].set_data(x=fit_array[0], y=fit_array[1])
+        Args:
-        self.waveform_y.curves[0].set_data(x=fit_array[0], y=fit_array[2])
+            data(dict):  data from device
-        # self.fit_x.set_data(x=fit_array[0],y=fit_array[1])
+            meta(dict): metadata from device
-        # self.fit_y.set_data(x=fit_array[0],y=fit_array[2])
+        """
+
+        signals = data.get('signals')
+        enable_live_preview = signals.get("omny_xray_gui_update_frame_acq").get('value')
+        enable_x_motor = signals.get("omny_xray_gui_enable_mv_x").get('value')
+        enable_y_motor = signals.get("omny_xray_gui_enable_mv_y").get('value')
+        self.on_live_view_enabled(bool(enable_live_preview))
+        self.on_motors_enable(bool(enable_x_motor), bool(enable_y_motor))
+
+        # Signals from epics gui device
+        # send message
+        user_message = signals.get("omny_xray_gui_send_message").get('value')
+        self.user_message = user_message
+        # sample name
+        sample_message = signals.get("omny_xray_gui_sample_name").get('value')
+        self.sample_name = sample_message
+        # enable frame acquisition
+        update_frame_acq = signals.get("omny_xray_gui_update_frame_acq").get('value')
+        self.on_live_view_enabled(bool(update_frame_acq))
+        # enable submit button
+        enable_submit_button = signals.get("omny_xray_gui_submit").get('value')
+        self.enable_submit_button(enable_submit_button)
 
     @SafeSlot()
     def submit(self):
         """Execute submit action by submit button."""
-        print("submit pushed")
-        self.submit_button.blockSignals(True)
         if self.roi_manager.single_active_roi is None:
             logger.warning("No active ROI")
             return
         roi_coordinates = self.roi_manager.single_active_roi.get_coordinates()
-        roi_center_x = roi_coordinates["center_x"]
+        roi_center_x = roi_coordinates['center_x']
-        roi_center_y = roi_coordinates["center_y"]
+        roi_center_y = roi_coordinates['center_y']
         # Case of rectangular ROI
         if isinstance(self.roi_manager.single_active_roi, RectangularROI):
-            roi_width = roi_coordinates["width"]
+            roi_width = roi_coordinates['width']
-            roi_height = roi_coordinates["height"]
+            roi_height = roi_coordinates['height']
         elif isinstance(self.roi_manager.single_active_roi, CircularROI):
-            roi_width = roi_coordinates["diameter"]
+            roi_width = roi_coordinates['diameter']
-            roi_height = roi_coordinates["radius"]
+            roi_height = roi_coordinates['radius']
         else:
             logger.warning("Unsupported ROI type for submit action.")
             return
 
-        print(
+        print(f"current roi: x:{roi_center_x}, y:{roi_center_y}, w:{roi_width},h:{roi_height}") #TODO remove when will be not needed for debugging
-            f"current roi: x:{roi_center_x}, y:{roi_center_y}, w:{roi_width},h:{roi_height}"
-        )  # TODO remove when will be not needed for debugging
         # submit roi coordinates
-        step = int(self.dev.omny_xray_gui.step.read().get("omny_xray_gui_step").get("value"))
+        step = int(self.dev.omny_xray_gui.step.read().get("omny_xray_gui_step").get('value'))
 
-        xval_x = getattr(self.dev.omny_xray_gui, f"xval_x_{step}").set(roi_center_x)
+        xval_x = getattr(self.dev.omny_xray_gui.xval_x, f"xval_x_{step}").set(roi_center_x)
-        xval_y = getattr(self.dev.omny_xray_gui, f"yval_y_{step}").set(roi_center_y)
+        xval_y = getattr(self.dev.omny_xray_gui.yval_y, f"yval_y_{step}").set(roi_center_y)
-        width_x = getattr(self.dev.omny_xray_gui, f"width_x_{step}").set(roi_width)
+        width_x = getattr(self.dev.omny_xray_gui.width_x, f"width_x_{step}").set(roi_width)
-        width_y = getattr(self.dev.omny_xray_gui, f"width_y_{step}").set(roi_height)
+        width_y = getattr(self.dev.omny_xray_gui.width_y, f"width_y_{step}").set(roi_height)
         self.dev.omny_xray_gui.submit.set(1)
-        print("submit done")
-        self.submit_button.blockSignals(False)
     
     def cleanup(self):
         """Cleanup connections on widget close -> disconnect slots and stop live mode of camera."""
-        self.bec_dispatcher.disconnect_slot(
+        self.bec_dispatcher.disconnect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
-            self.device_updates, MessageEndpoints.device_readback("omny_xray_gui")
+        getattr(self.dev,CAMERA[0]).live_mode = False
-        )
-        getattr(self.dev, CAMERA[0]).stop_live_mode()
         super().cleanup()
 
-
 if __name__ == "__main__":
     import sys
 
     from qtpy.QtWidgets import QApplication
-    from bec_widgets.utils import BECDispatcher
-    from bec_widgets.utils.colors import apply_theme
 
     app = QApplication(sys.argv)
-    apply_theme("light")
+
-    dispatcher = BECDispatcher(gui_id="xray")
     win = XRayEye()
 
     win.resize(1000, 800)

csaxs_bec/device_configs/ptycho_flomni.yaml

@@ -435,9 +435,9 @@ cam_xeye:
 #   deviceConfig:
 #     camera_id: 203
 #     bits_per_pixel: 24
-#     num_rotation_90: 2
+#     num_rotation_90: 3
 #     transpose: false
-#     force_monochrome: false
+#     force_monochrome: true
 #     m_n_colormode: 1
 #   enabled: true
 #   onFailure: buffer
@@ -472,7 +472,7 @@ omnyfsh:
 ############################################################
 omny_xray_gui:
   description: Gui signals
-  deviceClass: csaxs_bec.devices.omny.xray_epics_gui.OMNYXRayAlignGUI
+  deviceClass: csaxs_bec.devices.omny.xray_epics_gui.OMNYXRayEpicsGUI
   deviceConfig: {}
   enabled: true
   onFailure: buffer

csaxs_bec/devices/epics/allied_vision_camera.py

@@ -1,161 +0,0 @@
-"""Module for the EPICS integration of the AlliedVision Camera via Vimba SDK."""
-
-import threading
-import traceback
-from enum import IntEnum
-
-import numpy as np
-from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt, Kind, Signal
-from ophyd.areadetector import ADComponent as ADCpt
-from ophyd.areadetector import DetectorBase
-from ophyd_devices import PreviewSignal
-from ophyd_devices.devices.areadetector.cam import VimbaDetectorCam
-from ophyd_devices.devices.areadetector.plugins import ImagePlugin_V35 as ImagePlugin
-from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
-from typeguard import typechecked
-
-logger = bec_logger.logger
-
-
-class ACQUIRE_MODES(IntEnum):
-    """Acquiring enums for Allied Vision Camera"""
-
-    ACQUIRING = 1
-    DONE = 0
-
-
-class AlliedVisionCamera(PSIDeviceBase, DetectorBase):
-    """
-    Epics Area Detector interface for the Allied Vision Alvium G1-507m camera via Vimba SDK.
-    The IOC runs with under the prefix: 'X12SA-GIGECAM-AV1:'.
-    """
-
-    USER_ACCESS = ["start_live_mode", "stop_live_mode"]
-
-    cam = ADCpt(VimbaDetectorCam, "cam1:")
-    image = ADCpt(ImagePlugin, "image1:")
-
-    preview = Cpt(
-        PreviewSignal,
-        name="preview",
-        ndim=2,
-        num_rotation_90=0,
-        transpose=False,
-        doc="Preview signal of the AlliedVision camera.",
-    )
-
-    live_mode_enabled = Cpt(
-        Signal,
-        name="live_mode_enabled",
-        value=False,
-        doc="Enable or disable live mode.",
-        kind=Kind.config,
-    )
-
-    def __init__(
-        self,
-        *,
-        name: str,
-        prefix: str,
-        poll_rate: int = 5,
-        num_rotation_90: int = 0,
-        transpose: bool = False,
-        scan_info=None,
-        device_manager=None,
-        **kwargs,
-    ):
-        super().__init__(
-            name=name, prefix=prefix, scan_info=scan_info, device_manager=device_manager, **kwargs
-        )
-        self._poll_thread = threading.Thread(
-            target=self._poll_array_data, daemon=True, name=f"{self.name}_poll_thread"
-        )
-        self._poll_thread_kill_event = threading.Event()
-        self._poll_start_event = threading.Event()
-        if poll_rate <= 0:
-            logger.warning(
-                f"Poll rate must be positive for Camera {self.name} and non-zero, setting to 1 Hz."
-            )
-            poll_rate = 1
-            self.stop_live_mode()
-        elif poll_rate > 10:
-            logger.warning(f"Poll rate too high for Camera {self.name}, setting to 10 Hz max.")
-            poll_rate = 10
-        self._poll_rate = poll_rate
-        self._unique_array_id = 0
-        self._pv_timeout = 2.0
-        self.image: ImagePlugin
-        self.preview.num_rotation_90 = num_rotation_90
-        self.preview.transpose = transpose
-        self._live_mode_lock = threading.RLock()
-        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
-        self.cam.acquire.subscribe(self._on_live_mode_enabled_changed, run=False)
-
-    def start_live_mode(self) -> None:
-        """Start live mode."""
-        self.live_mode_enabled.put(True)
-
-    def stop_live_mode(self) -> None:
-        """Stop live mode."""
-        self.live_mode_enabled.put(False)
-
-    def _on_live_mode_enabled_changed(self, *args, value, **kwargs) -> None:
-        self._apply_live_mode(bool(value))
-
-    def _apply_live_mode(self, enabled: bool) -> None:
-        with self._live_mode_lock:
-            if enabled:
-                if not self._poll_start_event.is_set():
-                    self._poll_start_event.set()
-                    self.cam.acquire.put(ACQUIRE_MODES.ACQUIRING.value)  # Start acquisition
-                else:
-                    logger.info(f"Live mode already started for {self.name}.")
-                return
-
-            if self._poll_start_event.is_set():
-                self._poll_start_event.clear()
-                self.cam.acquire.put(ACQUIRE_MODES.DONE.value)  # Stop acquisition
-            else:
-                logger.info(f"Live mode already stopped for {self.name}.")
-
-    def on_connected(self):
-        """Reset the unique array ID on connection."""
-        self.cam.array_counter.set(0).wait(timeout=self._pv_timeout)
-        self.cam.array_callbacks.set(1).wait(timeout=self._pv_timeout)
-        self._poll_thread.start()
-
-    def _poll_array_data(self):
-        """Poll the array data for preview updates."""
-        while self._poll_start_event.wait():
-            while not self._poll_thread_kill_event.wait(1 / self._poll_rate):
-                try:
-                    # First check if there is a new image
-                    if self.image.unique_id.get() != self._unique_array_id:
-                        self._unique_array_id = self.image.unique_id.get()
-                    else:
-                        continue  # No new image, skip update
-                    # Get new image data
-                    value = self.image.array_data.get()
-                    if value is None:
-                        logger.info(f"No image data available for preview of {self.name}")
-                        continue
-
-                    array_size = self.image.array_size.get()
-                    if array_size[0] == 0:  # 2D image, not color image
-                        array_size = array_size[1:]
-                    # Geometry correction for the image
-                    data = np.reshape(value, array_size)
-                    self.preview.put(data)
-                except Exception:  # pylint: disable=broad-except
-                    content = traceback.format_exc()
-                    logger.error(
-                        f"Error while polling array data for preview of {self.name}: {content}"
-                    )
-
-    def on_destroy(self):
-        """Stop the polling thread on destruction."""
-        self._poll_start_event.set()
-        self._poll_thread_kill_event.set()
-        if self._poll_thread.is_alive():
-            self._poll_thread.join(timeout=2)

csaxs_bec/devices/epics/mcs_card/mcs_card_csaxs.py

@@ -443,6 +443,7 @@ class MCSCardCSAXS(PSIDeviceBase, MCSCard):
         while not self._scan_done_thread_kill_event.is_set():
             while self._start_monitor_async_data_emission.wait():
                 try:
+                    logger.debug(f"Monitoring async data emission for {self.name}...")
                     if (
                         hasattr(self.scan_info.msg, "num_points")
                         and self.scan_info.msg.num_points is not None
@@ -452,6 +453,7 @@ class MCSCardCSAXS(PSIDeviceBase, MCSCard):
                                 for callback in self._scan_done_callbacks:
                                     callback(exception=None)
                         else:
+                            logger.info(f"Current data index is {self._current_data_index}")
                             if self._current_data_index >= 1:
                                 for callback in self._scan_done_callbacks:
                                     callback(exception=None)

csaxs_bec/devices/ids_cameras/base_integration/camera.py

@@ -156,6 +156,7 @@ class Camera:
         camera_id (int): The ID of the camera device.
         m_n_colormode (Literal[0, 1, 2, 3]): Color mode for the camera.
         bits_per_pixel (Literal[8, 24]): Number of bits per pixel for the camera.
+        live_mode (bool): Whether to enable live mode for the camera.
     """
 
     def __init__(

csaxs_bec/devices/ids_cameras/ids_camera.py

@@ -3,19 +3,21 @@
 from __future__ import annotations
 
 import threading
-from typing import TYPE_CHECKING, Literal
+import time
+from typing import TYPE_CHECKING, Literal, Tuple, TypedDict
 
 import numpy as np
-from ophyd import Component as Cpt, Signal, Kind
-
 from bec_lib import messages
 from bec_lib.logger import bec_logger
-from csaxs_bec.devices.ids_cameras.base_integration.camera import Camera
+from ophyd import Component as Cpt
 from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
 from ophyd_devices.utils.bec_signals import AsyncSignal, PreviewSignal
 
+from csaxs_bec.devices.ids_cameras.base_integration.camera import Camera
+
 if TYPE_CHECKING:
     from bec_lib.devicemanager import ScanInfo
+    from pydantic import ValidationInfo
 
 logger = bec_logger.logger
 
@@ -43,15 +45,8 @@ class IDSCamera(PSIDeviceBase):
         doc="Signal for the region of interest (ROI).",
         async_update={"type": "add", "max_shape": [None]},
     )
-    live_mode_enabled = Cpt(
-        Signal,
-        name="live_mode_enabled",
-        value=False,
-        doc="Enable or disable live mode.",
-        kind=Kind.config,
-    )
 
-    USER_ACCESS = ["start_live_mode", "stop_live_mode", "mask", "set_rect_roi", "get_last_image"]
+    USER_ACCESS = ["live_mode", "mask", "set_rect_roi", "get_last_image"]
 
     def __init__(
         self,
@@ -88,22 +83,15 @@ class IDSCamera(PSIDeviceBase):
             bits_per_pixel=bits_per_pixel,
             connect=False,
         )
+        self._live_mode = False
         self._inputs = {"live_mode": live_mode}
         self._mask = np.zeros((1, 1), dtype=np.uint8)
         self.image.num_rotation_90 = num_rotation_90
         self.image.transpose = transpose
         self._force_monochrome = force_monochrome
-        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
-        self.live_mode_enabled.put(bool(live_mode))
 
     ############## Live Mode Methods ##############
 
-    def start_live_mode(self) -> None:
-        self.live_mode_enabled.put(True)
-
-    def stop_live_mode(self) -> None:
-        self.live_mode_enabled.put(False)
-
     @property
     def mask(self) -> np.ndarray:
         """Return the current region of interest (ROI) for the camera."""
@@ -126,15 +114,22 @@ class IDSCamera(PSIDeviceBase):
             )
         self._mask = value
 
-    def _on_live_mode_enabled_changed(self, *args, value, **kwargs):
+    @property
-        """Callback for when live mode is changed."""
+    def live_mode(self) -> bool:
-        enabled = bool(value)
+        """Return whether the camera is in live mode."""
-        if enabled and self.cam._connected is False:  # pylint: disable=protected-access
+        return self._live_mode
-            self.cam.on_connect()
+
-        if enabled:
+    @live_mode.setter
-            self._start_live()
+    def live_mode(self, value: bool):
-        else:
+        """Set the live mode for the camera."""
-            self._stop_live()
+        if value != self._live_mode:
+            if self.cam._connected is False:  # $ pylint: disable=protected-access
+                self.cam.on_connect()
+            self._live_mode = value
+            if value:
+                self._start_live()
+            else:
+                self._stop_live()
 
     def set_rect_roi(self, x: int, y: int, width: int, height: int):
         """Set the rectangular region of interest (ROI) for the camera."""
@@ -201,7 +196,7 @@ class IDSCamera(PSIDeviceBase):
         """Connect to the camera."""
         self.cam.force_monochrome = self._force_monochrome
         self.cam.on_connect()
-        self.live_mode_enabled.put(bool(self._inputs.get("live_mode", False)))
+        self.live_mode = self._inputs.get("live_mode", False)
         self.set_rect_roi(0, 0, self.cam.cam.width.value, self.cam.cam.height.value)
 
     def on_destroy(self):
@@ -211,7 +206,7 @@ class IDSCamera(PSIDeviceBase):
 
     def on_trigger(self):
         """Handle the trigger event."""
-        if not bool(self.live_mode_enabled.get()):
+        if not self.live_mode:
             return
         image = self.image.get()
         if image is not None:

csaxs_bec/devices/omny/webcam_viewer.py

@@ -2,7 +2,7 @@ import requests
 import threading
 import cv2
 import numpy as np
-from ophyd import Device, Component as Cpt, Kind, Signal
+from ophyd import Device, Component as Cpt
 from ophyd_devices import PreviewSignal
 import traceback 
 
@@ -13,13 +13,6 @@ logger = bec_logger.logger
 class WebcamViewer(Device):
     USER_ACCESS = ["start_live_mode", "stop_live_mode"]
     preview = Cpt(PreviewSignal, ndim=2, num_rotation_90=0, transpose=False)
-    live_mode_enabled = Cpt(
-        Signal,
-        name="live_mode_enabled",
-        value=False,
-        doc="Enable or disable live mode.",
-        kind=Kind.config,
-    )
 
     def __init__(self, url:str, name:str, num_rotation_90=0, transpose=False, **kwargs) -> None:
         super().__init__(name=name, **kwargs)
@@ -28,54 +21,20 @@ class WebcamViewer(Device):
         self._update_thread = None
         self._buffer = b""
         self._shutdown_event = threading.Event()
-        self._live_mode_lock = threading.RLock()
         self.preview.num_rotation_90 = num_rotation_90
         self.preview.transpose = transpose
-        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
 
     def start_live_mode(self) -> None:
-        self.live_mode_enabled.put(True)
+        if self._connection is not None:
-
+            return
-    def stop_live_mode(self) -> None:
+        self._update_thread = threading.Thread(target=self._update_loop, daemon=True)
-        self.live_mode_enabled.put(False)
+        self._update_thread.start()
-
-    def _on_live_mode_enabled_changed(self, *args, value, **kwargs) -> None:
-        self._apply_live_mode(bool(value))
-
-    def _apply_live_mode(self, enabled: bool) -> None:
-        with self._live_mode_lock:
-            if enabled:
-                if self._update_thread is not None and self._update_thread.is_alive():
-                    return
-                self._shutdown_event.clear()
-                self._update_thread = threading.Thread(target=self._update_loop, daemon=True)
-                self._update_thread.start()
-                return
-
-            if self._update_thread is None:
-                return
-            self._shutdown_event.set()
-            if self._connection is not None:
-                try:
-                    self._connection.close()
-                except Exception:  # pylint: disable=broad-except
-                    pass
-                self._connection = None
-            self._update_thread.join(timeout=2)
-            if self._update_thread.is_alive():
-                logger.warning("Webcam live mode thread did not stop within timeout.")
-                return
-            self._update_thread = None
-            self._buffer = b""
-            self._shutdown_event.clear()
 
     def _update_loop(self) -> None:
         while not self._shutdown_event.is_set():
             try:
-                self._connection = requests.get(self.url, stream=True, timeout=5)
+                self._connection = requests.get(self.url, stream=True)
                 for chunk in self._connection.iter_content(chunk_size=1024):
-                    if self._shutdown_event.is_set():
-                        break
                     self._buffer += chunk
                     start = self._buffer.find(b'\xff\xd8') # JPEG start
                     end = self._buffer.find(b'\xff\xd9') # JPEG end
@@ -91,3 +50,16 @@ class WebcamViewer(Device):
             except Exception as exc:
                 content = traceback.format_exc()
                 logger.error(f"Image update loop failed: {content}")
+
+    def stop_live_mode(self) -> None:
+        if self._connection is None:
+            return
+        self._shutdown_event.set()
+        if self._connection is not None:
+            self._connection.close()
+            self._connection = None
+        if self._update_thread is not None:
+            self._update_thread.join()
+            self._update_thread = None
+
+        self._shutdown_event.clear()

csaxs_bec/devices/omny/xray_epics_gui.py

@@ -1,44 +1,74 @@
-import numpy as np
+
-from ophyd import Component as Cpt, Signal, EpicsSignal
+from ophyd import Component as Cpt
 from ophyd import Device
+from ophyd import DynamicDeviceComponent as Dcpt
+from ophyd import EpicsSignal
 
 
-class OMNYXRayAlignGUI(Device):
 
-    update_frame_acqdone = Cpt(Signal, value=0)
+class OMNYXRayEpicsGUI(Device):
-    update_frame_acq = Cpt(Signal, value=0)
-    enable_mv_x = Cpt(Signal, value=0)
-    enable_mv_y = Cpt(Signal, value=0)
-    send_message = Cpt(Signal, value=0)
-    sample_name = Cpt(Signal, value=0)
-    angle = Cpt(Signal, value=0)
-    pixel_size = Cpt(Signal, value=0)
-    submit = Cpt(EpicsSignal, name="submit", read_pv="XOMNYI-XEYE-SUBMIT:0", auto_monitor=True)
-    step = Cpt(Signal, value=0)
-    recbg = Cpt(Signal, value=0)
-    mvx = Cpt(Signal, value=0)
-    mvy = Cpt(Signal, value=0)
 
-    fit_array = Cpt(Signal, value=np.zeros((3, 10)))
+    save_frame = Cpt(
-    fit_params_x = Cpt(Signal, value=np.zeros((2, 3)))
+    EpicsSignal, name="save_frame", read_pv="XOMNYI-XEYE-SAVFRAME:0",auto_monitor=True
-    fit_params_y = Cpt(Signal, value=np.zeros((2, 3)))
+    )
+    update_frame_acqdone = Cpt(
+    EpicsSignal, name="update_frame_acqdone", read_pv="XOMNYI-XEYE-ACQDONE:0",auto_monitor=True
+    )
+    update_frame_acq = Cpt(
+    EpicsSignal, name="update_frame_acq", read_pv="XOMNYI-XEYE-ACQ:0",auto_monitor=True
+    )
+    width_y_dynamic = {
+        f"width_y_{i}": (EpicsSignal, f"XOMNYI-XEYE-YWIDTH_Y:{i}", {"auto_monitor": True}) for i in range(0, 11)
+    }
+    width_y = Dcpt(width_y_dynamic)
+    width_x_dynamic = {
+        f"width_x_{i}": (EpicsSignal, f"XOMNYI-XEYE-XWIDTH_X:{i}", {"auto_monitor": True}) for i in range(0, 11)
+    }
+    width_x = Dcpt(width_x_dynamic)
+    enable_mv_x = Cpt(
+    EpicsSignal, name="enable_mv_x", read_pv="XOMNYI-XEYE-ENAMVX:0",auto_monitor=True
+    )
+    enable_mv_y = Cpt(
+    EpicsSignal, name="enable_mv_y", read_pv="XOMNYI-XEYE-ENAMVY:0",auto_monitor=True
+    )
+    send_message = Cpt(
+    EpicsSignal, name="send_message", read_pv="XOMNYI-XEYE-MESSAGE:0.DESC",auto_monitor=True
+    )
+    sample_name  = Cpt(
+    EpicsSignal, name="sample_name", read_pv="XOMNYI-XEYE-SAMPLENAME:0.DESC",auto_monitor=True
+    )
+    angle = Cpt(
+    EpicsSignal, name="angle", read_pv="XOMNYI-XEYE-ANGLE:0",auto_monitor=True
+    )
+    pixel_size = Cpt(
+    EpicsSignal, name="pixel_size", read_pv="XOMNYI-XEYE-PIXELSIZE:0",auto_monitor=True
+    )
+    submit = Cpt(
+    EpicsSignal, name="submit", read_pv="XOMNYI-XEYE-SUBMIT:0",auto_monitor=True
+    )
+    step = Cpt(
+    EpicsSignal, name="step", read_pv="XOMNYI-XEYE-STEP:0",auto_monitor=True
+    )
+    xval_x_dynamic = {
+        f"xval_x_{i}": (EpicsSignal, f"XOMNYI-XEYE-XVAL_X:{i}", {"auto_monitor": True}) for i in range(0, 11)
+    }
+    xval_x = Dcpt(xval_x_dynamic)
+    yval_y_dynamic = {
+        f"yval_y_{i}": (EpicsSignal, f"XOMNYI-XEYE-YVAL_Y:{i}", {"auto_monitor": True}) for i in range(0, 11)
+    }
+    yval_y = Dcpt(yval_y_dynamic)
+    recbg = Cpt(
+    EpicsSignal, name="recbg", read_pv="XOMNYI-XEYE-RECBG:0",auto_monitor=True
+    )
+    stage_pos_x_dynamic = {
+        f"stage_pos_x_{i}": (EpicsSignal, f"XOMNYI-XEYE-STAGEPOSX:{i}", {"auto_monitor": True}) for i in range(1, 6)
+    }
+    stage_pos_x = Dcpt(stage_pos_x_dynamic)
+    mvx = Cpt(
+    EpicsSignal, name="mvx", read_pv="XOMNYI-XEYE-MVX:0",auto_monitor=True
+    )
+    mvy = Cpt(
+    EpicsSignal, name="mvy", read_pv="XOMNYI-XEYE-MVY:0",auto_monitor=True
+    )
 
-    # Generate width_y_0 to width_y_10
-    for i in range(11):
-        locals()[f"width_y_{i}"] = Cpt(Signal, value=0)
 
-    # Generate width_x_0 to width_x_10
-    for i in range(11):
-        locals()[f"width_x_{i}"] = Cpt(Signal, value=0)
-
-    # Generate xval_x_0 to xval_x_10
-    for i in range(11):
-        locals()[f"xval_x_{i}"] = Cpt(Signal, value=0)
-
-    # Generate yval_y_0 to yval_y_10
-    for i in range(11):
-        locals()[f"yval_y_{i}"] = Cpt(Signal, value=0)
-
-    # Generate stage_pos_x_1 to stage_pos_x_5
-    for i in range(1, 6):
-        locals()[f"stage_pos_x_{i}"] = Cpt(Signal, value=0)

tests/tests_devices/test_ids_camera.py

@@ -54,7 +54,7 @@ def test_on_connected_sets_mask_and_live_mode(ids_camera):
 
 def test_on_trigger_roi_signal(ids_camera):
     """Test the on_trigger method to ensure it processes the ROI signal correctly."""
-    ids_camera.start_live_mode()
+    ids_camera.live_mode = True
     test_image = np.array([[2, 4], [6, 8]])
     test_mask = np.array([[1, 0], [0, 1]], dtype=np.uint8)
     ids_camera.mask = test_mask

tests/tests_scans/test_lamni_fermat_scan.py

@@ -229,22 +229,6 @@ def device_manager_mock():
                         "kwargs": {},
                     },
                 ),
-                messages.DeviceInstructionMessage(
-                    metadata={
-                        "readout_priority": "monitored",
-                        "RID": "1234",
-                        "device_instr_id": "diid",
-                    },
-                    device="lsamrot",
-                    action="rpc",
-                    parameter={
-                        "device": "lsamrot",
-                        "func": "readback.get",
-                        "rpc_id": "rpc_id",
-                        "args": (),
-                        "kwargs": {},
-                    },
-                ),
                 messages.DeviceInstructionMessage(
                     metadata={
                         "readout_priority": "monitored",