wip client regenerated

.copier-answers.yml

@@ -2,7 +2,7 @@
 # It is needed to track the repo template version, and editing may break things.
 # This file will be overwritten by copier on template updates.
 
-_commit: v1.2.2
+_commit: v1.2.8
 _src_path: https://github.com/bec-project/plugin_copier_template.git
 make_commit: false
 project_name: csaxs_bec

.gitea/workflows/ci.yml

@@ -28,7 +28,7 @@ on:
         description: "Python version to use"
         required: false
         type: string
-        default: "3.11"
+        default: "3.12"
 
 permissions:
   pull-requests: write
@@ -44,7 +44,19 @@ jobs:
       - name: Setup Python
         uses: actions/setup-python@v5
         with:
-          python-version: "${{ inputs.PYTHON_VERSION || '3.11' }}"
+          python-version: "${{ inputs.PYTHON_VERSION || '3.12' }}"
+
+      - name: Checkout BEC Plugin Repository
+        uses: actions/checkout@v4
+        with:
+          repository: bec/csaxs_bec
+          ref: "${{ inputs.BEC_PLUGIN_REPO_BRANCH || github.head_ref || github.sha }}"
+          path: ./csaxs_bec
+
+      - name: Lint for merge conflicts from template updates
+        shell: bash
+        # Find all Copier conflicts except this line
+        run: '! grep -r "<<<<<<< before updating" | grep -v "grep -r \"<<<<<<< before updating"'
 
       - name: Checkout BEC Core
         run: git clone --depth 1 --branch "${{ inputs.BEC_CORE_BRANCH || 'main' }}" https://github.com/bec-project/bec.git ./bec
@@ -55,13 +67,6 @@ jobs:
       - name: Checkout BEC Widgets
         run: git clone --depth 1 --branch "${{ inputs.BEC_WIDGETS_BRANCH || 'main' }}" https://github.com/bec-project/bec_widgets.git ./bec_widgets
 
-      - name: Checkout BEC Plugin Repository
-        uses: actions/checkout@v4
-        with:
-          repository: bec/csaxs_bec
-          ref: "${{ inputs.BEC_PLUGIN_REPO_BRANCH || github.head_ref || github.sha }}"
-          path: ./csaxs_bec
-
       - name: Install dependencies
         shell: bash
         run: |

.gitea/workflows/create_update_pr.yml

@@ -0,0 +1,62 @@
+name: Create template upgrade PR for csaxs_bec
+on:
+  workflow_dispatch:
+
+permissions:
+  pull-requests: write
+
+jobs:
+  create_update_branch_and_pr:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
+
+    steps:
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.12'
+    
+      - name: Install tools
+        run: |
+          pip install copier PySide6
+
+      - name: Checkout
+        uses: actions/checkout@v4
+    
+      - name: Perform update
+        run: |
+          git config --global user.email "bec_ci_staging@psi.ch"
+          git config --global user.name "BEC automated CI"
+
+          branch="chore/update-template-$(python -m uuid)"
+          echo "switching to branch $branch"
+          git checkout -b $branch
+
+          echo "Running copier update..."
+          output="$(copier update --trust --defaults --conflict inline 2>&1)"
+          echo "$output"
+          msg="$(printf '%s\n' "$output" | head -n 1)"
+
+          if ! grep -q "make_commit: true" .copier-answers.yml ; then
+            echo "Autocommit not made, committing..."
+            git add -A
+            git commit -a -m "$msg"
+          fi
+
+          if diff-index --quiet HEAD ; then
+            echo "No changes detected"
+            exit 0
+          fi
+
+          git push -u origin $branch
+          curl -X POST "https://gitea.psi.ch/api/v1/repos/${{ gitea.repository }}/pulls" \
+            -H "Authorization: token ${{ secrets.CI_REPO_WRITE }}" \
+            -H "Content-Type: application/json" \
+            -d "{
+                  \"title\": \"Template: $(echo $msg)\",
+                  \"body\": \"This PR was created by Gitea Actions\",
+                  \"head\": \"$(echo $branch)\",
+                  \"base\": \"main\"
+                }"

.gitlab-ci.yml

@@ -1,20 +0,0 @@
-include:
-  - project: bec/awi_utils
-    file: /templates/plugin-repo-template.yml
-    inputs:
-      name: "csaxs"
-      target: "csaxs_bec"
-      branch: $CHILD_PIPELINE_BRANCH
-
-pages:
-  stage: Deploy
-  needs: []
-  variables:
-    TARGET_BRANCH: $CI_COMMIT_REF_NAME
-  rules:
-    - if: "$CI_COMMIT_TAG != null"
-      variables:
-        TARGET_BRANCH: $CI_COMMIT_TAG
-    - if: '$CI_COMMIT_REF_NAME == "main" && $CI_PROJECT_PATH == "bec/csaxs_bec"'
-  script:
-    - curl -X POST -d "branches=$CI_COMMIT_REF_NAME" -d "token=$RTD_TOKEN" https://readthedocs.org/api/v2/webhook/sls-csaxs/270162/

csaxs_bec/bec_ipython_client/plugins/LamNI/__init__.py

@@ -1,2 +1,6 @@
-from .load_additional_correction import lamni_read_additional_correction
-from .x_ray_eye_align import DataDrivenLamNI, LamNI, MagLamNI, XrayEyeAlign
+from .alignment import XrayEyeAlign
+from .lamni import LamNI
+from .lamni_optics_mixin import LamNIInitError, LaMNIInitStages, LamNIOpticsMixin
+__all__ = [
+    "LamNI", "XrayEyeAlign", "LamNIInitError", "LaMNIInitStages", "LamNIOpticsMixin"
+]

csaxs_bec/bec_ipython_client/plugins/LamNI/alignment.py

@@ -0,0 +1,461 @@
+import builtins
+import time
+from collections import defaultdict
+
+import numpy as np
+from bec_lib import bec_logger
+from typeguard import typechecked
+
+from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen
+
+logger = bec_logger.logger
+
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    umv = builtins.__dict__.get("umv")
+    umvr = builtins.__dict__.get("umvr")
+
+
+class XrayEyeAlign:
+    # pixel calibration, multiply to get mm
+    # PIXEL_CALIBRATION = 0.2/209 #.2 with binning
+    PIXEL_CALIBRATION = 0.2 / 218  # .2 with binning
+
+    def __init__(self, client, lamni) -> None:
+        self.client = client
+        self.lamni = lamni
+        self.device_manager = client.device_manager
+        self.scans = client.scans
+        self.alignment_values = defaultdict(list)
+        self._reset_init_values()
+        self.corr_pos_x = []
+        self.corr_pos_y = []
+        self.corr_angle = []
+        self.corr_pos_x_2 = []
+        self.corr_pos_y_2 = []
+        self.corr_angle_2 = []
+
+    # ------------------------------------------------------------------
+    # Correction reset
+    # ------------------------------------------------------------------
+
+    def reset_correction(self):
+        self.corr_pos_x = []
+        self.corr_pos_y = []
+        self.corr_angle = []
+
+    def reset_correction_2(self):
+        self.corr_pos_x_2 = []
+        self.corr_pos_y_2 = []
+        self.corr_angle_2 = []
+
+    def reset_xray_eye_correction(self):
+        self.client.delete_global_var("tomo_fit_xray_eye")
+
+    # ------------------------------------------------------------------
+    # FOV offset properties
+    # ------------------------------------------------------------------
+
+    @property
+    def tomo_fovx_offset(self):
+        val = self.client.get_global_var("tomo_fov_offset")
+        if val is None:
+            return 0.0
+        return val[0] / 1000
+
+    @tomo_fovx_offset.setter
+    @typechecked
+    def tomo_fovx_offset(self, val: float):
+        val_old = self.client.get_global_var("tomo_fov_offset")
+        if val_old is None:
+            val_old = [0.0, 0.0]
+        self.client.set_global_var("tomo_fov_offset", [val * 1000, val_old[1]])
+
+    @property
+    def tomo_fovy_offset(self):
+        val = self.client.get_global_var("tomo_fov_offset")
+        if val is None:
+            return 0.0
+        return val[1] / 1000
+
+    @tomo_fovy_offset.setter
+    @typechecked
+    def tomo_fovy_offset(self, val: float):
+        val_old = self.client.get_global_var("tomo_fov_offset")
+        if val_old is None:
+            val_old = [0.0, 0.0]
+        self.client.set_global_var("tomo_fov_offset", [val_old[0], val * 1000])
+
+    # ------------------------------------------------------------------
+    # Internal helpers
+    # ------------------------------------------------------------------
+
+    def _reset_init_values(self):
+        self.shift_xy = [0, 0]
+        self._xray_fov_xy = [0, 0]
+
+    def _disable_rt_feedback(self):
+        self.device_manager.devices.rtx.controller.feedback_disable()
+
+    def _enable_rt_feedback(self):
+        self.device_manager.devices.rtx.controller.feedback_enable_with_reset()
+
+    def tomo_rotate(self, val: float):
+        # pylint: disable=undefined-variable
+        umv(self.device_manager.devices.lsamrot, val)
+
+    def get_tomo_angle(self):
+        return self.device_manager.devices.lsamrot.readback.read()["lsamrot"]["value"]
+
+    # ------------------------------------------------------------------
+    # X-ray eye camera control
+    # ------------------------------------------------------------------
+
+    def save_frame(self):
+        epics_put("XOMNYI-XEYE-SAVFRAME:0", 1)
+
+    def update_frame(self):
+        epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
+        # start live
+        epics_put("XOMNYI-XEYE-ACQ:0", 1)
+        # wait for start live
+        while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
+            time.sleep(0.5)
+            print("waiting for live view to start...")
+        fshopen()
+
+        epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
+
+        while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
+            print("waiting for new frame...")
+            time.sleep(0.5)
+
+        time.sleep(0.5)
+        # stop live view
+        epics_put("XOMNYI-XEYE-ACQ:0", 0)
+        time.sleep(1)
+        print("got new frame")
+
+    def update_fov(self, k: int):
+        self._xray_fov_xy[0] = max(epics_get(f"XOMNYI-XEYE-XWIDTH_X:{k}"), self._xray_fov_xy[0])
+        self._xray_fov_xy[1] = max(0, self._xray_fov_xy[0])
+
+    @property
+    def movement_buttons_enabled(self):
+        return [epics_get("XOMNYI-XEYE-ENAMVX:0"), epics_get("XOMNYI-XEYE-ENAMVY:0")]
+
+    @movement_buttons_enabled.setter
+    def movement_buttons_enabled(self, enabled: bool):
+        enabled = int(enabled)
+        epics_put("XOMNYI-XEYE-ENAMVX:0", enabled)
+        epics_put("XOMNYI-XEYE-ENAMVY:0", enabled)
+
+    def send_message(self, msg: str):
+        epics_put("XOMNYI-XEYE-MESSAGE:0.DESC", msg)
+
+    # ------------------------------------------------------------------
+    # Alignment procedure
+    # ------------------------------------------------------------------
+
+    def align(self):
+        self._reset_init_values()
+        self.reset_correction()
+        self.reset_correction_2()
+
+        self._disable_rt_feedback()
+        epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
+        self._enable_rt_feedback()
+
+        self.movement_buttons_enabled = False
+        epics_put("XOMNYI-XEYE-ACQ:0", 0)
+        self.send_message("please wait...")
+        epics_put("XOMNYI-XEYE-SAMPLENAME:0.DESC", "Let us LAMNI...")
+
+        self._disable_rt_feedback()
+        k = 0
+
+        self.lamni.lfzp_in()
+        self.update_frame()
+
+        self.movement_buttons_enabled = False
+        epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+        epics_put("XOMNYI-XEYE-STEP:0", 0)
+        self.send_message("Submit center value of FZP.")
+
+        while True:
+            if epics_get("XOMNYI-XEYE-SUBMIT:0") == 1:
+                val_x = epics_get(f"XOMNYI-XEYE-XVAL_X:{k}") * self.PIXEL_CALIBRATION  # in mm
+                val_y = epics_get(f"XOMNYI-XEYE-YVAL_Y:{k}") * self.PIXEL_CALIBRATION  # in mm
+                self.alignment_values[k] = [val_x, val_y]
+                print(
+                    f"Clicked position {k}: x {self.alignment_values[k][0]}, y"
+                    f" {self.alignment_values[k][1]}"
+                )
+
+                if k == 0:  # received center value of FZP
+                    self.send_message("please wait ...")
+                    self.lamni.loptics_out()
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
+                    self.movement_buttons_enabled = False
+                    print("Moving sample in, FZP out")
+
+                    self._disable_rt_feedback()
+                    time.sleep(0.3)
+                    self._enable_rt_feedback()
+                    time.sleep(0.3)
+
+                    self.update_frame()
+                    self.send_message("Go and find the sample")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+                    self.movement_buttons_enabled = True
+
+                elif k == 1:  # received sample center value at samrot 0
+                    msg = (
+                        f"Base shift values from movement are x {self.shift_xy[0]}, y"
+                        f" {self.shift_xy[1]}"
+                    )
+                    print(msg)
+                    logger.info(msg)
+                    self.shift_xy[0] += (
+                        self.alignment_values[0][0] - self.alignment_values[1][0]
+                    ) * 1000
+                    self.shift_xy[1] += (
+                        self.alignment_values[1][1] - self.alignment_values[0][1]
+                    ) * 1000
+                    print(
+                        "Base shift values from movement and clicked position are x"
+                        f" {self.shift_xy[0]}, y {self.shift_xy[1]}"
+                    )
+
+                    self.scans.lamni_move_to_scan_center(
+                        self.shift_xy[0] / 1000, self.shift_xy[1] / 1000, self.get_tomo_angle()
+                    ).wait()
+
+                    self.send_message("please wait ...")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
+                    self.movement_buttons_enabled = False
+                    time.sleep(1)
+
+                    self.scans.lamni_move_to_scan_center(
+                        self.shift_xy[0] / 1000, self.shift_xy[1] / 1000, self.get_tomo_angle()
+                    ).wait()
+
+                    epics_put("XOMNYI-XEYE-ANGLE:0", self.get_tomo_angle())
+                    self.update_frame()
+                    self.send_message("Submit sample center and FOV (0 deg)")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+                    self.update_fov(k)
+
+                elif 1 < k < 10:  # received sample center value at samrot 0 ... 315
+                    self.send_message("please wait ...")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
+
+                    self._disable_rt_feedback()
+                    self.tomo_rotate((k - 1) * 45 - 45 / 2)
+                    self.scans.lamni_move_to_scan_center(
+                        self.shift_xy[0] / 1000, self.shift_xy[1] / 1000, self.get_tomo_angle()
+                    ).wait()
+                    self._disable_rt_feedback()
+                    self.tomo_rotate((k - 1) * 45)
+                    self.scans.lamni_move_to_scan_center(
+                        self.shift_xy[0] / 1000, self.shift_xy[1] / 1000, self.get_tomo_angle()
+                    ).wait()
+
+                    epics_put("XOMNYI-XEYE-ANGLE:0", self.get_tomo_angle())
+                    self.update_frame()
+                    self.send_message("Submit sample center")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+                    epics_put("XOMNYI-XEYE-ENAMVX:0", 1)
+                    self.update_fov(k)
+
+                elif k == 10:  # received sample center value at samrot 270, done
+                    self.send_message("done...")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
+                    self.movement_buttons_enabled = False
+                    self.update_fov(k)
+                    break
+
+                k += 1
+                epics_put("XOMNYI-XEYE-STEP:0", k)
+
+            if k < 2:
+                _xrayeyalignmvx = epics_get("XOMNYI-XEYE-MVX:0")
+                _xrayeyalignmvy = epics_get("XOMNYI-XEYE-MVY:0")
+                if _xrayeyalignmvx != 0 or _xrayeyalignmvy != 0:
+                    self.shift_xy[0] = self.shift_xy[0] + _xrayeyalignmvx
+                    self.shift_xy[1] = self.shift_xy[1] + _xrayeyalignmvy
+                    self.scans.lamni_move_to_scan_center(
+                        self.shift_xy[0] / 1000, self.shift_xy[1] / 1000, self.get_tomo_angle()
+                    ).wait()
+                    print(
+                        f"Current center horizontal {self.shift_xy[0]} vertical {self.shift_xy[1]}"
+                    )
+                    epics_put("XOMNYI-XEYE-MVY:0", 0)
+                    epics_put("XOMNYI-XEYE-MVX:0", 0)
+                    self.update_frame()
+
+            time.sleep(0.2)
+
+        self.write_output()
+        fovx = self._xray_fov_xy[0] * self.PIXEL_CALIBRATION * 1000 / 2
+        fovy = self._xray_fov_xy[1] * self.PIXEL_CALIBRATION * 1000 / 2
+        print(
+            f"The largest field of view from the xrayeyealign was \nfovx = {fovx:.0f} microns,"
+            f" fovy = {fovy:.0f} microns"
+        )
+        print("Use matlab routine to fit the current alignment...")
+        print(
+            "This additional shift is applied to the base shift values\n which are x"
+            f" {self.shift_xy[0]}, y {self.shift_xy[1]}"
+        )
+
+        self._disable_rt_feedback()
+        self.tomo_rotate(0)
+
+        print(
+            "\n\nNEXT LOAD ALIGNMENT PARAMETERS\nby running"
+            " lamni.align.read_xray_eye_correction()\n"
+        )
+
+        self.client.set_global_var("tomo_fov_offset", self.shift_xy)
+
+    # ------------------------------------------------------------------
+    # Alignment output
+    # ------------------------------------------------------------------
+
+    def write_output(self):
+        import os
+        with open(
+            os.path.expanduser("~/Data10/specES1/internal/xrayeye_alignmentvalues"), "w"
+        ) as alignment_values_file:
+            alignment_values_file.write("angle\thorizontal\tvertical\n")
+            for k in range(2, 11):
+                fovx_offset = (self.alignment_values[0][0] - self.alignment_values[k][0]) * 1000
+                fovy_offset = (self.alignment_values[k][1] - self.alignment_values[0][1]) * 1000
+                print(
+                    f"Writing to file new alignment: number {k}, value x {fovx_offset}, y"
+                    f" {fovy_offset}"
+                )
+                alignment_values_file.write(f"{(k-2)*45}\t{fovx_offset}\t{fovy_offset}\n")
+
+    # ------------------------------------------------------------------
+    # X-ray eye sinusoidal correction (loaded from MATLAB fit files)
+    # ------------------------------------------------------------------
+
+    def read_xray_eye_correction(self, dir_path=None):
+        import os
+        if dir_path is None:
+            dir_path = os.path.expanduser("~/Data10/specES1/internal/")
+        tomo_fit_xray_eye = np.zeros((2, 3))
+        for i, axis in enumerate(["x", "y"]):
+            for j, coeff in enumerate(["A", "B", "C"]):
+                with open(os.path.join(dir_path, f"ptychotomoalign_{coeff}{axis}.txt"), "r") as f:
+                    tomo_fit_xray_eye[i][j] = f.readline()
+
+        self.client.set_global_var("tomo_fit_xray_eye", tomo_fit_xray_eye.tolist())
+        # x amp, phase, offset, y amp, phase, offset
+        #  0 0    0 1    0 2     1 0    1 1    1 2
+        print("New alignment parameters loaded from X-ray eye")
+        print(
+            f"X Amplitude {tomo_fit_xray_eye[0][0]}, "
+            f"X Phase {tomo_fit_xray_eye[0][1]}, "
+            f"X Offset {tomo_fit_xray_eye[0][2]}, "
+            f"Y Amplitude {tomo_fit_xray_eye[1][0]}, "
+            f"Y Phase {tomo_fit_xray_eye[1][1]}, "
+            f"Y Offset {tomo_fit_xray_eye[1][2]}"
+        )
+
+    def lamni_compute_additional_correction_xeye_mu(self, angle):
+        """Compute sinusoidal correction from the X-ray eye fit for the given angle."""
+        tomo_fit_xray_eye = self.client.get_global_var("tomo_fit_xray_eye")
+        if tomo_fit_xray_eye is None:
+            print("Not applying any additional correction. No x-ray eye data available.\n")
+            return (0, 0)
+
+        # x amp, phase, offset, y amp, phase, offset
+        #  0 0    0 1    0 2     1 0    1 1    1 2
+        correction_x = (
+            tomo_fit_xray_eye[0][0] * np.sin(np.radians(angle) + tomo_fit_xray_eye[0][1])
+            + tomo_fit_xray_eye[0][2]
+        ) / 1000
+        correction_y = (
+            tomo_fit_xray_eye[1][0] * np.sin(np.radians(angle) + tomo_fit_xray_eye[1][1])
+            + tomo_fit_xray_eye[1][2]
+        ) / 1000
+
+        print(f"Xeye correction x {correction_x}, y {correction_y} for angle {angle}\n")
+        return (correction_x, correction_y)
+
+    # ------------------------------------------------------------------
+    # Additional lookup-table corrections (iteration 1 and 2)
+    # ------------------------------------------------------------------
+
+    def read_additional_correction(self, correction_file: str):
+        self.corr_pos_x, self.corr_pos_y, self.corr_angle = self._read_correction_file_xy(
+            correction_file
+        )
+
+    def read_additional_correction_2(self, correction_file: str):
+        self.corr_pos_x_2, self.corr_pos_y_2, self.corr_angle_2 = self._read_correction_file_xy(
+            correction_file
+        )
+
+    def _read_correction_file_xy(self, correction_file: str):
+        """Parse a correction file that contains corr_pos_x, corr_pos_y and corr_angle entries."""
+        with open(correction_file, "r") as f:
+            num_elements = f.readline()
+            int_num_elements = int(num_elements.split(" ")[2])
+            print(int_num_elements)
+            corr_pos_x = []
+            corr_pos_y = []
+            corr_angle = []
+            for j in range(0, int_num_elements * 3):
+                line = f.readline()
+                value = line.split(" ")[2]
+                name = line.split(" ")[0].split("[")[0]
+                if name == "corr_pos_x":
+                    corr_pos_x.append(float(value) / 1000)
+                elif name == "corr_pos_y":
+                    corr_pos_y.append(float(value) / 1000)
+                elif name == "corr_angle":
+                    corr_angle.append(float(value))
+        return corr_pos_x, corr_pos_y, corr_angle
+
+    def compute_additional_correction(self, angle):
+        return self._compute_correction_xy(
+            angle, self.corr_pos_x, self.corr_pos_y, self.corr_angle, label="1"
+        )
+
+    def compute_additional_correction_2(self, angle):
+        return self._compute_correction_xy(
+            angle, self.corr_pos_x_2, self.corr_pos_y_2, self.corr_angle_2, label="2"
+        )
+
+    def _compute_correction_xy(self, angle, corr_pos_x, corr_pos_y, corr_angle, label=""):
+        """Find the correction for the closest angle in the lookup table."""
+        if not corr_pos_x:
+            print(f"Not applying additional correction {label}. No data available.\n")
+            return (0, 0)
+
+        shift_x = corr_pos_x[0]
+        shift_y = corr_pos_y[0]
+        angledelta = np.fabs(corr_angle[0] - angle)
+
+        for j in range(1, len(corr_pos_x)):
+            newangledelta = np.fabs(corr_angle[j] - angle)
+            if newangledelta < angledelta:
+                shift_x = corr_pos_x[j]
+                shift_y = corr_pos_y[j]
+                angledelta = newangledelta
+
+        if shift_x == 0 and angle < corr_angle[0]:
+            shift_x = corr_pos_x[0]
+            shift_y = corr_pos_y[0]
+
+        if shift_x == 0 and angle > corr_angle[-1]:
+            shift_x = corr_pos_x[-1]
+            shift_y = corr_pos_y[-1]
+
+        print(f"Additional correction shifts {label}: {shift_x} {shift_y}")
+        return (shift_x, shift_y)

csaxs_bec/bec_ipython_client/plugins/LamNI/extra_tomo.py

@@ -0,0 +1,211 @@
+"""
+extra_tomo.py
+=============
+Specialist LamNI subclasses for specific experimental configurations.
+Import explicitly when needed, e.g.:
+
+    from csaxs_bec...extra_tomo import MagLamNI
+    from csaxs_bec...extra_tomo import DataDrivenLamNI
+"""
+
+import builtins
+import datetime
+import os
+import time
+
+import h5py
+import numpy as np
+from bec_lib import bec_logger
+from bec_lib.alarm_handler import AlarmBase
+
+from .lamni import LamNI
+
+logger = bec_logger.logger
+
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    umv = builtins.__dict__.get("umv")
+    scans = builtins.__dict__.get("scans")
+
+
+class MagLamNI(LamNI):
+    """LamNI subclass for magnetic experiments (XMCD).
+
+    Adds a slow rotation helper and allows injection of a custom
+    per-angle callback via the ``lamni_at_each_angle`` builtin.
+    """
+
+    def sub_tomo_scan(self, subtomo_number, start_angle=None):
+        super().sub_tomo_scan(subtomo_number, start_angle)
+        # self.rotate_slowly(0)
+
+    def rotate_slowly(self, angle, step_size=20):
+        """Rotate to target angle in small steps to avoid mechanical stress."""
+        current_angle = dev.lsamrot.read(cached=True)["value"]
+        steps = int(np.ceil(np.abs(current_angle - angle) / step_size)) + 1
+        for target_angle in np.linspace(current_angle, angle, steps, endpoint=True):
+            umv(dev.lsamrot, target_angle)
+            scans.lamni_move_to_scan_center(
+                self.align.tomo_fovx_offset, self.align.tomo_fovy_offset, target_angle
+            )
+
+    def _at_each_angle(self, angle: float) -> None:
+        if "lamni_at_each_angle" in builtins.__dict__:
+            # pylint: disable=undefined-variable
+            lamni_at_each_angle(self, angle)
+            return
+
+        self.tomo_scan_projection(angle)
+        self.tomo_reconstruct()
+
+
+class DataDrivenLamNI(LamNI):
+    """LamNI subclass that reads per-projection scan parameters from an HDF5 file.
+
+    Instead of a fixed FOV and step size for the whole tomogram, each
+    projection can have individual values for step size, loptz position
+    and lateral shifts, as specified in a datadriven_params.h5 file.
+    """
+
+    def __init__(self, client):
+        super().__init__(client)
+        self.tomo_data = {}
+
+    def tomo_scan(
+        self,
+        subtomo_start=1,
+        start_index=None,
+        fname="~/Data10/data_driven_config/datadriven_params.h5",
+    ):
+        """Start a data-driven tomo scan.
+
+        Args:
+            subtomo_start (int): Unused; kept for API compatibility. Use start_index to resume.
+            start_index (int, optional): Skip projections before this index. Defaults to None.
+            fname (str): Path to the HDF5 parameter file. Defaults to the standard location.
+        """
+        bec = builtins.__dict__.get("bec")
+        scans = builtins.__dict__.get("scans")
+
+        fname = os.path.expanduser(fname)
+        if not os.path.exists(fname):
+            raise FileNotFoundError(f"Could not find datadriven params file in {fname}.")
+
+        content = f"Loading tomo parameters from {fname}."
+        logger.warning(content)
+        msg = bec.logbook.LogbookMessage()
+        msg.add_text(content).add_tag(["Data_driven_file", "BEC"])
+        self.client.logbook.send_logbook_message(msg)
+
+        self._update_tomo_data_from_file(fname)
+        self._current_special_angles = self.special_angles.copy()
+
+        if subtomo_start == 1 and start_index is None:
+            self.tomo_id = self.add_sample_database(
+                self.sample_name,
+                str(datetime.date.today()),
+                bec.active_account.decode(),
+                bec.queue.next_scan_number,
+                "lamni",
+                "test additional info",
+                "BEC",
+            )
+            self.write_pdf_report()
+
+        with scans.dataset_id_on_hold:
+            self.sub_tomo_data_driven(start_index)
+
+    def sub_tomo_scan(self, subtomo_number=None, start_angle=None):
+        raise NotImplementedError(
+            "Cannot run sub_tomo_scan with DataDrivenLamNI. "
+            "Use lamni.tomo_scan(start_index=<N>) to resume instead."
+        )
+
+    def _at_each_angle(
+        self, angle=None, stepsize=None, loptz_pos=None, manual_shift_x=0, manual_shift_y=0
+    ):
+        self.manual_shift_x = manual_shift_x
+        self.manual_shift_y = manual_shift_y
+        self.tomo_shellstep = stepsize
+        if loptz_pos is not None:
+            dev.rtx.controller.feedback_disable()
+            umv(dev.loptz, loptz_pos)
+        super()._at_each_angle(angle=angle)
+
+    def sub_tomo_data_driven(self, start_index=None):
+        """Iterate over all projections defined in the loaded HDF5 parameter file."""
+        for scan_index, scan_data in enumerate(zip(*self.tomo_data.values())):
+            if start_index and scan_index < start_index:
+                continue
+            (
+                angle,
+                stepsize,
+                loptz_pos,
+                propagation_distance,
+                manual_shift_x,
+                manual_shift_y,
+                subtomo_number,
+            ) = scan_data
+            bec.metadata.update(
+                {key: float(val) for key, val in zip(self.tomo_data.keys(), scan_data)}
+            )
+            successful = False
+            error_caught = False
+            if 0 <= angle < 360.05:
+                print(f"Starting LamNI scan for angle {angle}")
+                while not successful:
+                    self._start_beam_check()
+                    if not self.special_angles:
+                        self._current_special_angles = []
+                    if self._current_special_angles:
+                        next_special_angle = self._current_special_angles[0]
+                        if np.isclose(angle, next_special_angle, atol=0.5):
+                            self._current_special_angles.pop(0)
+                            num_repeats = self.special_angle_repeats
+                    else:
+                        num_repeats = 1
+                    try:
+                        start_scan_number = bec.queue.next_scan_number
+                        for i in range(num_repeats):
+                            self._at_each_angle(
+                                float(angle),
+                                stepsize=float(stepsize),
+                                loptz_pos=float(loptz_pos),
+                                manual_shift_x=float(manual_shift_x),
+                                manual_shift_y=float(manual_shift_y),
+                            )
+                        error_caught = False
+                    except AlarmBase as exc:
+                        if exc.alarm_type == "TimeoutError":
+                            bec.queue.request_queue_reset()
+                            time.sleep(2)
+                            error_caught = True
+                        else:
+                            raise exc
+
+                    if self._was_beam_okay() and not error_caught:
+                        successful = True
+                    else:
+                        self._wait_for_beamline_checks()
+
+                end_scan_number = bec.queue.next_scan_number
+                for scan_nr in range(start_scan_number, end_scan_number):
+                    self._write_tomo_scan_number(scan_nr, angle, subtomo_number)
+
+    def _update_tomo_data_from_file(self, fname: str) -> None:
+        """Load projection parameters from the HDF5 file into self.tomo_data."""
+        with h5py.File(fname, "r") as file:
+            self.tomo_data["theta"] = np.array([*file["theta"]]).flatten()
+            self.tomo_data["stepsize"] = np.array([*file["stepsize"]]).flatten()
+            self.tomo_data["loptz"] = np.array([*file["loptz"]]).flatten()
+            self.tomo_data["propagation_distance"] = np.array(
+                [*file["relative_propagation_distance"]]
+            ).flatten()
+            self.tomo_data["manual_shift_x"] = np.array([*file["manual_shift_x"]]).flatten()
+            self.tomo_data["manual_shift_y"] = np.array([*file["manual_shift_y"]]).flatten()
+            self.tomo_data["subtomo_id"] = np.array([*file["subtomo_id"]]).flatten()
+
+        shapes = [data.shape for data in self.tomo_data.values()]
+        if len(set(shapes)) > 1:
+            raise ValueError(f"Tomo data file has entries of inconsistent lengths: {shapes}.")

csaxs_bec/bec_ipython_client/plugins/LamNI/lamni_optics_mixin.py

@@ -8,18 +8,20 @@ from rich.table import Table
 from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_put, fshclose
 from csaxs_bec.bec_ipython_client.plugins.omny.omny_general_tools import OMNYTools
 
-
-# import builtins to avoid linter errors
 dev = builtins.__dict__.get("dev")
-umv = builtins.__dict__.get("umv")
 bec = builtins.__dict__.get("bec")
+scans = builtins.__dict__.get("scans")
 
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 class LamNIInitError(Exception):
     pass
 
 
-class LaMNIInitStagesMixin:
+class LaMNIInitStages:
+    """Handles hardware initialization and referencing of LamNI stages."""
+
     def __init__(self, client):
         super().__init__()
         self.client = client
@@ -28,14 +30,11 @@ class LaMNIInitStagesMixin:
     def lamni_init_stages(self):
 
         if self.OMNYTools.yesno("Start initialization of LamNI stages. OK?"):
-            print("staring...")
+            print("starting...")
             dev.lsamrot.enabled = True
         else:
             return
 
-
-
-
         if self.check_all_axes_of_lamni_referenced():
             if self.OMNYTools.yesno("All axes are referenced. Continue anyways?"):
                 print("ok then...")
@@ -44,7 +43,6 @@ class LaMNIInitStagesMixin:
 
         axis_id_lsamrot = dev.lsamrot._config["deviceConfig"].get("axis_Id")
         if dev.lsamrot.controller.get_motor_limit_switch(axis_id_lsamrot)[1] == False:
-
             if self.OMNYTools.yesno("The rotation stage will be moved to one limit"):
                 print("starting...")
             else:
@@ -56,7 +54,9 @@ class LaMNIInitStagesMixin:
             print("The controller will be disabled in bec. To enable dev.lsamrot.enabled=True")
             return
 
-        if self.OMNYTools.yesno("Init of loptz. Can the stage move to the upstream limit without collision?"):
+        if self.OMNYTools.yesno(
+            "Init of loptz. Can the stage move to the upstream limit without collision?"
+        ):
             print("ok then...")
         else:
             return
@@ -81,13 +81,14 @@ class LaMNIInitStagesMixin:
         self.drive_axis_to_limit(dev.lsamy, "reverse")
         self.find_reference_mark(dev.lsamy)
 
-        # the dual encoder requires the reference mark to pass on both encoders
         print("Referencing lsamrot")
         self.drive_axis_to_limit(dev.lsamrot, "reverse")
         time.sleep(0.1)
         self.find_reference_mark(dev.lsamrot)
 
-        if self.OMNYTools.yesno("Init of leye. Can the stage move to -x limit without collision?"):
+        if self.OMNYTools.yesno(
+            "Init of leye. Can the stage move to -x limit without collision?"
+        ):
             print("starting...")
         else:
             return
@@ -97,15 +98,6 @@ class LaMNIInitStagesMixin:
         print("Referencing leyey")
         self.drive_axis_to_limit(dev.leyey, "forward")
 
-        # set_lm lsamx 6 14
-        # set_lm lsamy 6 14
-        # set_lm lsamrot -3 362
-        # set_lm loptx -1 -0.2
-        # set_lm lopty 3.0 3.6
-        # set_lm loptz 82 87
-        # set_lm leyex 0 25
-        # set_lm leyey 0.5 50
-
         print("Init of Smaract stages")
         dev.losax.controller.find_reference_mark(2, 0, 1000, 1)
         time.sleep(1)
@@ -113,15 +105,6 @@ class LaMNIInitStagesMixin:
         time.sleep(1)
         dev.losax.controller.find_reference_mark(1, 0, 1000, 1)
         time.sleep(1)
-        # dev.losax.controller.find_reference_mark(3, 1, 1000, 1)
-        # time.sleep(1)
-        # dev.losax.controller.find_reference_mark(4, 1, 1000, 1)
-        # time.sleep(1)
-
-        # set_lm losax -1.5 0.25
-        # set_lm losay -2.5 4.1
-        # set_lm losaz -4.1 -0.5
-        # set_lm lcsy -1.5 5
 
         self._align_setup()
 
@@ -178,6 +161,8 @@ class LaMNIInitStagesMixin:
 
 
 class LamNIOpticsMixin:
+    """Optics movement methods: FZP, OSA, central stop and X-ray eye."""
+
     @staticmethod
     def _get_user_param_safe(device, var):
         param = dev[device].user_parameter
@@ -192,13 +177,11 @@ class LamNIOpticsMixin:
         umv(dev.leyey, leyey_out)
 
         epics_put("XOMNYI-XEYE-ACQ:0", 2)
-        # move rotation stage to zero to avoid problems with wires
         umv(dev.lsamrot, 0)
         umv(dev.dttrz, 5854, dev.fttrz, 2395)
 
     def leye_in(self):
         bec.queue.next_dataset_number += 1
-        # move rotation stage to zero to avoid problems with wires
         umv(dev.lsamrot, 0)
         umv(dev.dttrz, 6419.677, dev.fttrz, 2959.979)
         while True:
@@ -215,15 +198,10 @@ class LamNIOpticsMixin:
     def _lfzp_in(self):
         loptx_in = self._get_user_param_safe("loptx", "in")
         lopty_in = self._get_user_param_safe("lopty", "in")
-        umv(
-            dev.loptx, loptx_in, dev.lopty, lopty_in
-        )  # for 7.2567 keV and 150 mu, 60 nm fzp, loptz 83.6000 for propagation 1.4 mm
+        umv(dev.loptx, loptx_in, dev.lopty, lopty_in)
 
     def lfzp_in(self):
-        """
-        move in the lamni zone plate.
-        This will disable rt feedback, move the FZP and re-enabled the feedback.
-        """
+        """Move in the LamNI zone plate, disabling/re-enabling RT feedback around the move."""
         if "rtx" in dev and dev.rtx.enabled:
             dev.rtx.controller.feedback_disable()
 
@@ -233,18 +211,15 @@ class LamNIOpticsMixin:
             dev.rtx.controller.feedback_enable_with_reset()
 
     def loptics_in(self):
-        """
-        Move in the lamni optics, including the FZP and the OSA.
-        """
+        """Move in the LamNI optics (FZP + OSA)."""
         self.lfzp_in()
         self.losa_in()
 
     def loptics_out(self):
-        """Move out the lamni optics"""
+        """Move out the LamNI optics."""
         if "rtx" in dev and dev.rtx.enabled:
             dev.rtx.controller.feedback_disable()
 
-        # self.lcs_out()
         self.losa_out()
         loptx_out = self._get_user_param_safe("loptx", "out")
         lopty_out = self._get_user_param_safe("lopty", "out")
@@ -255,28 +230,17 @@ class LamNIOpticsMixin:
             dev.rtx.controller.feedback_enable_with_reset()
 
     def lcs_in(self):
-        # umv lcsx -1.852 lcsy -0.095
         pass
 
     def lcs_out(self):
         umv(dev.lcsy, 3)
 
     def losa_in(self):
-        # 6.2 keV, 170 um FZP
-        # umv(dev.losax, -1.4450000, dev.losay, -0.1800)
-        # umv(dev.losaz, -1)
-        # 6.7, 170
-        # umv(dev.losax, -1.4850, dev.losay, -0.1930)
-        # umv(dev.losaz, 1.0000)
-        # 7.2, 150
         losax_in = self._get_user_param_safe("losax", "in")
         losay_in = self._get_user_param_safe("losay", "in")
         losaz_in = self._get_user_param_safe("losaz", "in")
         umv(dev.losax, losax_in, dev.losay, losay_in)
         umv(dev.losaz, losaz_in)
-        # 11 kev
-        # umv(dev.losax, -1.161000, dev.losay, -0.196)
-        # umv(dev.losaz, 1.0000)
 
     def losa_out(self):
         losay_out = self._get_user_param_safe("losay", "out")
@@ -285,11 +249,10 @@ class LamNIOpticsMixin:
         umv(dev.losay, losay_out)
 
     def lfzp_info(self, mokev_val=-1):
-
         if mokev_val == -1:
             try:
                 mokev_val = dev.mokev.readback.get()
-            except:
+            except Exception:
                 print(
                     "Device mokev does not exist. You can specify the energy in keV as an argument instead."
                 )
@@ -324,10 +287,6 @@ class LamNIOpticsMixin:
             )
 
         console.print(table)
-
-        print("OSA Information:")
-        # print(f"Current losaz %.1f\n", A[losaz])
-        # print("The OSA will collide with the sample plane at %.1f\n\n", 89.3-A[loptz])
         print(
             "The numbers presented here are for a sample in the plane of the lamni sample holder.\n"
         )

csaxs_bec/bec_ipython_client/plugins/LamNI/load_additional_correction.py

@@ -1,22 +0,0 @@
-def lamni_read_additional_correction():
-    # "additional_correction_shift"
-    # [0][] x , [1][] y, [2][] angle, [3][0] number of elements
-
-    with open("correction_lamni_um_S01405_.txt", "r") as f:
-        num_elements = f.readline()
-        int_num_elements = int(num_elements.split(" ")[2])
-        print(int_num_elements)
-        corr_pos_x = []
-        corr_pos_y = []
-        corr_angle = []
-        for j in range(0, int_num_elements * 3):
-            line = f.readline()
-            value = line.split(" ")[2]
-            name = line.split(" ")[0].split("[")[0]
-            if name == "corr_pos_x":
-                corr_pos_x.append(value)
-            elif name == "corr_pos_y":
-                corr_pos_y.append(value)
-            elif name == "corr_angle":
-                corr_angle.append(value)
-    return (corr_pos_x, corr_pos_y, corr_angle, num_elements)

csaxs_bec/bec_ipython_client/plugins/cSAXS/cSAXSDLPCA200.py

@@ -0,0 +1,442 @@
+"""
+csaxs_dlpca200.py
+=================
+BEC control script for FEMTO DLPCA-200 Variable Gain Low Noise Current Amplifiers
+connected to Galil RIO digital outputs.
+
+DLPCA-200 Remote Control (datasheet page 4)
+-------------------------------------------
+Sub-D pin -> function:
+  Pin 10  ->  gain LSB   (digital out channel, index 0 in bit-tuple)
+  Pin 11  ->  gain MID   (digital out channel, index 1 in bit-tuple)
+  Pin 12  ->  gain MSB   (digital out channel, index 2 in bit-tuple)
+  Pin 13  ->  coupling   LOW = AC,  HIGH = DC
+  Pin 14  ->  speed mode HIGH = low noise (Pin14=1), LOW = high speed (Pin14=0)
+
+Gain truth table (MSB, MID, LSB):
+  0,0,0  ->  low-noise: 1e3   high-speed: 1e5
+  0,0,1  ->  low-noise: 1e4   high-speed: 1e6
+  0,1,0  ->  low-noise: 1e5   high-speed: 1e7
+  0,1,1  ->  low-noise: 1e6   high-speed: 1e8
+  1,0,0  ->  low-noise: 1e7   high-speed: 1e9
+  1,0,1  ->  low-noise: 1e8   high-speed: 1e10
+  1,1,0  ->  low-noise: 1e9   high-speed: 1e11
+
+Strategy: prefer low-noise mode (1e3-1e9). For 1e10 and 1e11,
+automatically fall back to high-speed mode.
+
+Device wiring example (galilrioesxbox):
+  bpm4:  Pin10->ch0, Pin11->ch1, Pin12->ch2, Pin13->ch3, Pin14->ch4
+  bim:   Pin10->ch6, Pin11->ch7, Pin12->ch8, Pin13->ch9, Pin14->ch10
+
+Usage examples
+--------------
+  csaxs_amp = cSAXSDLPCA200(client)
+
+  csaxs_amp.set_gain("bpm4", 1e7)          # low-noise if possible
+  csaxs_amp.set_gain("bim",  1e10)         # auto high-speed
+  csaxs_amp.set_coupling("bpm4", "DC")
+  csaxs_amp.set_coupling("bim",  "AC")
+  csaxs_amp.info("bpm4")                   # print current settings
+  csaxs_amp.info_all()                     # print all configured amplifiers
+"""
+
+import builtins
+
+from bec_lib import bec_logger
+
+logger = bec_logger.logger
+
+bec = builtins.__dict__.get("bec")
+dev = builtins.__dict__.get("dev")
+
+
+# ---------------------------------------------------------------------------
+# Amplifier registry
+# ---------------------------------------------------------------------------
+# Each entry describes one DLPCA-200 amplifier connected to a Galil RIO.
+#
+# Keys inside "channels":
+#   gain_lsb   -> digital output channel number wired to DLPCA-200 Pin 10
+#   gain_mid   -> digital output channel number wired to DLPCA-200 Pin 11
+#   gain_msb   -> digital output channel number wired to DLPCA-200 Pin 12
+#   coupling   -> digital output channel number wired to DLPCA-200 Pin 13
+#   speed_mode -> digital output channel number wired to DLPCA-200 Pin 14
+#
+# To add a new amplifier, simply extend this dict.
+# ---------------------------------------------------------------------------
+DLPCA200_AMPLIFIER_CONFIG: dict[str, dict] = {
+    "bpm4": {
+        "rio_device": "galilrioesxbox",
+        "description": "Beam Position Monitor 4 current amplifier",
+        "channels": {
+            "gain_lsb": 0,  # Pin 10 -> Galil ch0
+            "gain_mid": 1,  # Pin 11 -> Galil ch1
+            "gain_msb": 2,  # Pin 12 -> Galil ch2
+            "coupling": 3,  # Pin 13 -> Galil ch3
+            "speed_mode": 4,  # Pin 14 -> Galil ch4
+        },
+    },
+    "bim": {
+        "rio_device": "galilrioesxbox",
+        "description": "Beam Intensity Monitor current amplifier",
+        "channels": {
+            "gain_lsb": 6,  # Pin 10 -> Galil ch6
+            "gain_mid": 7,  # Pin 11 -> Galil ch7
+            "gain_msb": 8,  # Pin 12 -> Galil ch8
+            "coupling": 9,  # Pin 13 -> Galil ch9
+            "speed_mode": 10,  # Pin 14 -> Galil ch10
+        },
+    },
+}
+
+# ---------------------------------------------------------------------------
+# DLPCA-200 gain encoding tables
+# ---------------------------------------------------------------------------
+# (msb, mid, lsb) -> gain in V/A
+_GAIN_BITS_LOW_NOISE: dict[tuple, int] = {
+    (0, 0, 0): int(1e3),
+    (0, 0, 1): int(1e4),
+    (0, 1, 0): int(1e5),
+    (0, 1, 1): int(1e6),
+    (1, 0, 0): int(1e7),
+    (1, 0, 1): int(1e8),
+    (1, 1, 0): int(1e9),
+}
+
+_GAIN_BITS_HIGH_SPEED: dict[tuple, int] = {
+    (0, 0, 0): int(1e5),
+    (0, 0, 1): int(1e6),
+    (0, 1, 0): int(1e7),
+    (0, 1, 1): int(1e8),
+    (1, 0, 0): int(1e9),
+    (1, 0, 1): int(1e10),
+    (1, 1, 0): int(1e11),
+}
+
+# Inverse maps: gain -> (msb, mid, lsb, low_noise_flag)
+# low_noise_flag: True = Pin14 HIGH, False = Pin14 LOW
+_GAIN_TO_BITS: dict[int, tuple] = {}
+for _bits, _gain in _GAIN_BITS_LOW_NOISE.items():
+    _GAIN_TO_BITS[_gain] = (*_bits, True)
+for _bits, _gain in _GAIN_BITS_HIGH_SPEED.items():
+    if _gain not in _GAIN_TO_BITS:  # low-noise takes priority
+        _GAIN_TO_BITS[_gain] = (*_bits, False)
+
+VALID_GAINS = sorted(_GAIN_TO_BITS.keys())
+
+
+class cSAXSDLPCA200Error(Exception):
+    pass
+
+
+class cSAXSDLPCA200:
+    """
+    Control class for FEMTO DLPCA-200 current amplifiers connected via Galil RIO
+    digital outputs in a BEC environment.
+
+    Supports:
+    - Forward control: set_gain(), set_coupling()
+    - Readback reporting: info(), info_all(), read_settings()
+    - Robust error handling and logging following cSAXS conventions.
+    """
+
+    TAG = "[DLPCA200]"
+
+    def __init__(self, client, config: dict | None = None) -> None:
+        """
+        Parameters
+        ----------
+        client : BEC client object (passed through for future use)
+        config : optional override for DLPCA200_AMPLIFIER_CONFIG.
+                 Falls back to the module-level dict if not provided.
+        """
+        self.client = client
+        self._config: dict[str, dict] = config if config is not None else DLPCA200_AMPLIFIER_CONFIG
+
+    # ------------------------------------------------------------------
+    # Internal helpers
+    # ------------------------------------------------------------------
+
+    def _require_dev(self) -> None:
+        if dev is None:
+            raise cSAXSDLPCA200Error(
+                f"{self.TAG} BEC 'dev' namespace is not available in this session."
+            )
+
+    def _get_cfg(self, amp_name: str) -> dict:
+        """Return config dict for a named amplifier, raising on unknown names."""
+        if amp_name not in self._config:
+            known = ", ".join(sorted(self._config.keys()))
+            raise cSAXSDLPCA200Error(f"{self.TAG} Unknown amplifier '{amp_name}'. Known: [{known}]")
+        return self._config[amp_name]
+
+    def _get_rio(self, amp_name: str):
+        """Return the live RIO device object for a given amplifier."""
+        self._require_dev()
+        cfg = self._get_cfg(amp_name)
+        rio_name = cfg["rio_device"]
+        try:
+            rio = getattr(dev, rio_name)
+        except AttributeError:
+            raise cSAXSDLPCA200Error(f"{self.TAG} RIO device '{rio_name}' not found in BEC 'dev'.")
+        return rio
+
+    def _dout_get(self, rio, ch: int) -> int:
+        """Read one digital output channel (returns 0 or 1)."""
+        attr = getattr(rio.digital_out, f"ch{ch}")
+        val = attr.get()
+        return int(val)
+
+    def _dout_set(self, rio, ch: int, value: bool) -> None:
+        """Write one digital output channel (True=HIGH=1, False=LOW=0)."""
+        attr = getattr(rio.digital_out, f"ch{ch}")
+        attr.set(value)
+
+    def _read_gain_bits(self, amp_name: str) -> tuple[int, int, int, int]:
+        """
+        Read current gain bit-state from hardware.
+
+        Returns
+        -------
+        (msb, mid, lsb, speed_mode)
+            speed_mode: 1 = low-noise (Pin14=HIGH), 0 = high-speed (Pin14=LOW)
+        """
+        rio = self._get_rio(amp_name)
+        ch = self._get_cfg(amp_name)["channels"]
+        msb = self._dout_get(rio, ch["gain_msb"])
+        mid = self._dout_get(rio, ch["gain_mid"])
+        lsb = self._dout_get(rio, ch["gain_lsb"])
+        speed_mode = self._dout_get(rio, ch["speed_mode"])
+        return msb, mid, lsb, speed_mode
+
+    def _decode_gain(self, msb: int, mid: int, lsb: int, speed_mode: int) -> int | None:
+        """
+        Decode hardware bit-state into gain value (V/A).
+
+        speed_mode=1 -> low-noise table, speed_mode=0 -> high-speed table.
+        Returns None if the bit combination is not in the table.
+        """
+        bits = (msb, mid, lsb)
+        if speed_mode:
+            return _GAIN_BITS_LOW_NOISE.get(bits)
+        else:
+            return _GAIN_BITS_HIGH_SPEED.get(bits)
+
+    # ------------------------------------------------------------------
+    # Public API - control
+    # ------------------------------------------------------------------
+
+    def set_gain(self, amp_name: str, gain: float, force_high_speed: bool = False) -> None:
+        """
+        Set the transimpedance gain of a DLPCA-200 amplifier.
+
+        The method automatically selects low-noise mode (Pin14=HIGH) whenever
+        the requested gain is achievable in low-noise mode (1e3 - 1e9 V/A).
+        For gains of 1e10 and 1e11 V/A, high-speed mode is used automatically.
+
+        Parameters
+        ----------
+        amp_name : str
+            Amplifier name as defined in DLPCA200_AMPLIFIER_CONFIG (e.g. "bpm4").
+        gain : float or int
+            Target gain in V/A. Must be one of:
+            1e3, 1e4, 1e5, 1e6, 1e7, 1e8, 1e9, 1e10, 1e11.
+        force_high_speed : bool, optional
+            If True, force high-speed (low-noise=False) mode even for gains
+            below 1e10. Default: False (prefer low-noise).
+
+        Examples
+        --------
+        csaxs_amp.set_gain("bpm4", 1e7)          # low-noise mode (automatic)
+        csaxs_amp.set_gain("bim",  1e10)         # high-speed mode (automatic)
+        csaxs_amp.set_gain("bpm4", 1e7, force_high_speed=True)  # override to high-speed
+        """
+        gain_int = int(gain)
+        if gain_int not in _GAIN_TO_BITS:
+            valid_str = ", ".join(
+                f"1e{int(round(__import__('math').log10(g)))}" for g in VALID_GAINS
+            )
+            raise cSAXSDLPCA200Error(
+                f"{self.TAG} Invalid gain {gain:.2e} V/A for '{amp_name}'. "
+                f"Valid values: {valid_str}"
+            )
+
+        msb, mid, lsb, low_noise_preferred = _GAIN_TO_BITS[gain_int]
+
+        # Apply force_high_speed override
+        if force_high_speed and low_noise_preferred:
+            # Check if this gain is achievable in high-speed mode
+            hs_entry = next(
+                (bits for bits, g in _GAIN_BITS_HIGH_SPEED.items() if g == gain_int), None
+            )
+            if hs_entry is None:
+                raise cSAXSDLPCA200Error(
+                    f"{self.TAG} Gain {gain:.2e} V/A is not achievable in high-speed mode "
+                    f"for '{amp_name}'."
+                )
+            msb, mid, lsb = hs_entry
+            low_noise_preferred = False
+
+        use_low_noise = low_noise_preferred and not force_high_speed
+
+        try:
+            rio = self._get_rio(amp_name)
+            ch = self._get_cfg(amp_name)["channels"]
+
+            self._dout_set(rio, ch["gain_msb"], bool(msb))
+            self._dout_set(rio, ch["gain_mid"], bool(mid))
+            self._dout_set(rio, ch["gain_lsb"], bool(lsb))
+            self._dout_set(rio, ch["speed_mode"], use_low_noise)  # True=low-noise
+
+            mode_str = "low-noise" if use_low_noise else "high-speed"
+            logger.info(
+                f"{self.TAG} [{amp_name}] gain set to {gain_int:.2e} V/A "
+                f"({mode_str} mode, bits MSB={msb} MID={mid} LSB={lsb})"
+            )
+            print(
+                f"{amp_name}: gain -> {gain_int:.2e} V/A  [{mode_str}]  "
+                f"(bits: MSB={msb} MID={mid} LSB={lsb})"
+            )
+
+        except cSAXSDLPCA200Error:
+            raise
+        except Exception as exc:
+            raise cSAXSDLPCA200Error(
+                f"{self.TAG} Failed to set gain on '{amp_name}': {exc}"
+            ) from exc
+
+    def set_coupling(self, amp_name: str, coupling: str) -> None:
+        """
+        Set AC or DC coupling on a DLPCA-200 amplifier.
+
+        Parameters
+        ----------
+        amp_name : str
+            Amplifier name (e.g. "bpm4", "bim").
+        coupling : str
+            "AC" or "DC" (case-insensitive).
+            DC -> Pin13 HIGH,  AC -> Pin13 LOW.
+
+        Examples
+        --------
+        csaxs_amp.set_coupling("bpm4", "DC")
+        csaxs_amp.set_coupling("bim",  "AC")
+        """
+        coupling_upper = coupling.strip().upper()
+        if coupling_upper not in ("AC", "DC"):
+            raise cSAXSDLPCA200Error(
+                f"{self.TAG} Invalid coupling '{coupling}' for '{amp_name}'. " f"Use 'AC' or 'DC'."
+            )
+
+        pin13_high = coupling_upper == "DC"
+
+        try:
+            rio = self._get_rio(amp_name)
+            ch = self._get_cfg(amp_name)["channels"]
+            self._dout_set(rio, ch["coupling"], pin13_high)
+
+            logger.info(f"{self.TAG} [{amp_name}] coupling set to {coupling_upper}")
+            print(f"{amp_name}: coupling -> {coupling_upper}")
+
+        except cSAXSDLPCA200Error:
+            raise
+        except Exception as exc:
+            raise cSAXSDLPCA200Error(
+                f"{self.TAG} Failed to set coupling on '{amp_name}': {exc}"
+            ) from exc
+
+    # ------------------------------------------------------------------
+    # Public API - readback / reporting
+    # ------------------------------------------------------------------
+
+    def read_settings(self, amp_name: str) -> dict:
+        """
+        Read back the current settings from hardware digital outputs.
+
+        Returns
+        -------
+        dict with keys:
+            "amp_name"   : str
+            "gain"       : int or None    - gain in V/A (None if unknown bit pattern)
+            "mode"       : str            - "low-noise" or "high-speed"
+            "coupling"   : str            - "AC" or "DC"
+            "bits"       : dict           - raw bit values {msb, mid, lsb, speed_mode, coupling}
+        """
+        rio = self._get_rio(amp_name)
+        ch = self._get_cfg(amp_name)["channels"]
+
+        msb = self._dout_get(rio, ch["gain_msb"])
+        mid = self._dout_get(rio, ch["gain_mid"])
+        lsb = self._dout_get(rio, ch["gain_lsb"])
+        speed_mode = self._dout_get(rio, ch["speed_mode"])
+        coupling_bit = self._dout_get(rio, ch["coupling"])
+
+        gain = self._decode_gain(msb, mid, lsb, speed_mode)
+        mode = "low-noise" if speed_mode else "high-speed"
+        coupling = "DC" if coupling_bit else "AC"
+
+        return {
+            "amp_name": amp_name,
+            "gain": gain,
+            "mode": mode,
+            "coupling": coupling,
+            "bits": {
+                "msb": msb,
+                "mid": mid,
+                "lsb": lsb,
+                "speed_mode": speed_mode,
+                "coupling": coupling_bit,
+            },
+        }
+
+    def info(self, amp_name: str) -> None:
+        """
+        Print a plain summary of the current settings for one amplifier.
+
+        Example output
+        --------------
+        Amplifier   : bpm4
+        Description : Beam Position Monitor 4 current amplifier
+        RIO device  : galilrioesxbox
+        Gain        : 1.00e+07 V/A
+        Mode        : low-noise
+        Coupling    : DC
+        Raw bits    : MSB=1 MID=0 LSB=0  speed=1 coup=1
+        """
+        cfg = self._get_cfg(amp_name)
+
+        try:
+            s = self.read_settings(amp_name)
+        except Exception as exc:
+            print(f"{self.TAG} [{amp_name}] Could not read settings: {exc}")
+            return
+
+        gain_str = (
+            f"{s['gain']:.2e} V/A" if s["gain"] is not None else "UNKNOWN (invalid bit pattern)"
+        )
+        bits = s["bits"]
+
+        print(f"  {'Amplifier':<12}: {amp_name}")
+        print(f"  {'Description':<12}: {cfg.get('description', '')}")
+        print(f"  {'RIO device':<12}: {cfg['rio_device']}")
+        print(f"  {'Gain':<12}: {gain_str}")
+        print(f"  {'Mode':<12}: {s['mode']}")
+        print(f"  {'Coupling':<12}: {s['coupling']}")
+        print(
+            f"  {'Raw bits':<12}: MSB={bits['msb']} MID={bits['mid']} LSB={bits['lsb']}  speed={bits['speed_mode']} coup={bits['coupling']}"
+        )
+
+    def info_all(self) -> None:
+        """
+        Print a plain summary for ALL configured amplifiers.
+        """
+        print("\nDLPCA-200 Amplifier Status Report")
+        print("-" * 40)
+        for amp_name in sorted(self._config.keys()):
+            self.info(amp_name)
+            print()
+
+    def list_amplifiers(self) -> list[str]:
+        """Return sorted list of configured amplifier names."""
+        return sorted(self._config.keys())

csaxs_bec/bec_ipython_client/plugins/cSAXS/filter_transmission.py

@@ -41,8 +41,10 @@ import builtins
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 class cSAXSFilterTransmission:
     """

csaxs_bec/bec_ipython_client/plugins/cSAXS/smaract.py

@@ -8,11 +8,14 @@ from bec_lib import bec_logger
 logger = bec_logger.logger
 
 # Pull BEC globals if present
-bec = builtins.__dict__.get("bec")
-dev = builtins.__dict__.get("dev")
-umv = builtins.__dict__.get("umv")
-umvr = builtins.__dict__.get("umvr")
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    scans = builtins.__dict__.get("scans")
 
+def umv(*args):
+    return scans.umv(*args, relative=False)
+    
 
 class cSAXSInitSmaractStagesError(Exception):
     pass
@@ -383,7 +386,6 @@ class cSAXSInitSmaractStages:
         if not self._yesno("Proceed with the motions listed above?", "y"):
             logger.info("[cSAXS] Motion to initial position aborted by user.")
             return
-
         # --- Execution phase (SIMULTANEOUS MOTION) ---
         if umv is None:
             logger.error("[cSAXS] 'umv' is not available in this session.")

csaxs_bec/bec_ipython_client/plugins/flomni/flomni.py

@@ -22,8 +22,10 @@ logger = bec_logger.logger
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 
 class FlomniToolsError(Exception):
@@ -1004,6 +1006,20 @@ class FlomniAlignmentMixin:
         with open(os.path.join(dir_path, "ptychotomoalign_Cy3.txt"), "r") as file:
             tomo_alignment_fit[1][4] = file.readline()
 
+        tomo_alignment_fit[0][0] = gui.flomni.xeyegui.XRayEye.Waveform.fit_x_SineModel.dap_params['amplitude']
+        tomo_alignment_fit[0][1] = gui.flomni.xeyegui.XRayEye.Waveform.fit_x_SineModel.dap_params['frequency']
+        tomo_alignment_fit[0][2] = gui.flomni.xeyegui.XRayEye.Waveform.fit_x_SineModel.dap_params['shift']
+        tomo_alignment_fit[1][0] = gui.flomni.xeyegui.XRayEye.Waveform_0.fit_y_SineModel.dap_params['amplitude']
+        tomo_alignment_fit[1][1] = gui.flomni.xeyegui.XRayEye.Waveform_0.fit_y_SineModel.dap_params['frequency']
+        tomo_alignment_fit[1][2] = gui.flomni.xeyegui.XRayEye.Waveform_0.fit_y_SineModel.dap_params['shift']
+        print("applying vertical default values from mirror calibration, not from fit!")
+        tomo_alignment_fit[1][0] = 0
+        tomo_alignment_fit[1][1] = 0
+        tomo_alignment_fit[1][2] = 0
+        tomo_alignment_fit[1][3] = 0
+        tomo_alignment_fit[1][4] = 0
+
+
         print("New alignment parameters loaded:")
         print(
             f"X Amplitude {tomo_alignment_fit[0][0]}, "

csaxs_bec/bec_ipython_client/plugins/flomni/gui_tools.py

@@ -1,14 +1,15 @@
 import builtins
 
-from bec_widgets.cli.client import BECDockArea
-
 # from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
 
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
+
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 
 class flomniGuiToolsError(Exception):
@@ -26,10 +27,11 @@ class flomniGuiTools:
         self.gui = self.client.gui
 
     def flomnigui_show_gui(self):
-        if "flomni" in self.gui.windows:
-            self.gui.flomni.show()
-        else:
-            self.gui.new("flomni")
+        self.gui.new("flomni")
+        # if "flomni" in self.gui.windows:
+        #     self.gui.flomni.show()
+        # else:
+        #     self.gui.new("flomni")
 
     def flomnigui_stop_gui(self):
         self.gui.flomni.hide()
@@ -37,37 +39,37 @@ class flomniGuiTools:
     def flomnigui_raise(self):
         self.gui.flomni.raise_window()
 
-    # def flomnigui_show_xeyealign(self):
-    #     self.flomnigui_show_gui()
-    #     if self.xeyegui is None:
-    #         self.flomnigui_remove_all_docks()
-    #         self.xeyegui = self.gui.flomni.new("xeyegui").new("XRayEye")
-    #         # start live
-    #         if not dev.cam_xeye.live_mode:
-    #             dev.cam_xeye.live_mode = True
-
     def flomnigui_show_xeyealign(self):
         self.flomnigui_show_gui()
         if self._flomnigui_check_attribute_not_exists("xeyegui"):
             self.flomnigui_remove_all_docks()
-            self.xeyegui = self.gui.flomni.new("xeyegui").new("XRayEye")
-            # start live
-            if not dev.cam_xeye.live_mode:
-                dev.cam_xeye.live_mode = True
+            self.xeyegui = self.gui.flomni.new("XRayEye", object_name="xrayeye")
+        # start live
+        if not dev.cam_xeye.live_mode_enabled.get():
+            # dev.cam_xeye.live_mode = True
+            dev.cam_xeye.live_mode_enabled.put(True)
+        self.xeyegui.switch_tab("alignment")
 
+    def flomnigui_show_xeyealign_fittab(self):
+        self.flomnigui_show_gui()
+        if self._flomnigui_check_attribute_not_exists("xeyegui"):
+            self.flomnigui_remove_all_docks()
+            self.xeyegui = self.gui.flomni.new("XRayEye")
+        self.xeyegui.switch_tab("fit")
 
     def _flomnigui_check_attribute_not_exists(self, attribute_name):
-        if hasattr(self.gui,"flomni"):
-            if hasattr(self.gui.flomni,attribute_name):
+        if hasattr(self.gui, "flomni"):
+            if hasattr(self.gui.flomni, attribute_name):
                 return False
         return True
 
-
     def flomnigui_show_cameras(self):
         self.flomnigui_show_gui()
-        if self._flomnigui_check_attribute_not_exists("camera_gripper") or self._flomnigui_check_attribute_not_exists("camera_overview"):
+        if self._flomnigui_check_attribute_not_exists(
+            "camera_gripper"
+        ) or self._flomnigui_check_attribute_not_exists("camera_overview"):
             self.flomnigui_remove_all_docks()
-            camera_gripper_image = self.gui.flomni.new("camera_gripper").new("Image")
+            camera_gripper_image = self.gui.flomni.new("Image")
             if self._flomnicam_check_device_exists(dev.cam_flomni_gripper):
                 camera_gripper_image.image(("cam_flomni_gripper", "preview"))
                 camera_gripper_image.lock_aspect_ratio = True
@@ -78,7 +80,7 @@ class flomniGuiTools:
                 dev.cam_flomni_gripper.start_live_mode()
             else:
                 print("Cannot open camera_gripper. Device does not exist.")
-            camera_overview_image = self.gui.flomni.new("camera_overview").new("Image")
+            camera_overview_image = self.gui.flomni.new("Image")
             if self._flomnicam_check_device_exists(dev.cam_flomni_overview):
                 camera_overview_image.image(("cam_flomni_overview", "preview"))
                 camera_overview_image.lock_aspect_ratio = True
@@ -91,10 +93,10 @@ class flomniGuiTools:
                 print("Cannot open camera_overview. Device does not exist.")
 
     def flomnigui_remove_all_docks(self):
-        #dev.cam_flomni_overview.stop_live_mode()
-        #dev.cam_flomni_gripper.stop_live_mode()
-        #dev.cam_xeye.live_mode = False
-        self.gui.flomni.delete_all() 
+        # dev.cam_flomni_overview.stop_live_mode()
+        # dev.cam_flomni_gripper.stop_live_mode()
+        # dev.cam_xeye.live_mode = False
+        self.gui.flomni.delete_all()
         self.progressbar = None
         self.text_box = None
 
@@ -102,7 +104,7 @@ class flomniGuiTools:
         self.flomnigui_show_gui()
         if self._flomnigui_check_attribute_not_exists("idle_text_box"):
             self.flomnigui_remove_all_docks()
-            idle_text_box = self.gui.flomni.new("idle_textbox").new("TextBox")
+            idle_text_box = self.gui.flomni.new("TextBox")
         text = (
             "<pre>"
             + " ,---.,--. ,-----. ,--.   ,--.,--.  ,--.,--. \n"
@@ -118,13 +120,12 @@ class flomniGuiTools:
         import csaxs_bec
         from pathlib import Path
 
-        print("The general flOMNI documentation is at \nhttps://sls-csaxs.readthedocs.io/en/latest/user/ptychography/flomni.html#user-ptychography-flomni")
+        print(
+            "The general flOMNI documentation is at \nhttps://sls-csaxs.readthedocs.io/en/latest/user/ptychography/flomni.html#user-ptychography-flomni"
+        )
 
         csaxs_bec_basepath = Path(csaxs_bec.__file__).parent
-        docs_folder = (
-            csaxs_bec_basepath /
-            "bec_ipython_client" / "plugins" / "flomni" / "docs"
-        )
+        docs_folder = csaxs_bec_basepath / "bec_ipython_client" / "plugins" / "flomni" / "docs"
 
         if not docs_folder.is_dir():
             raise NotADirectoryError(f"Docs folder not found: {docs_folder}")
@@ -162,10 +163,9 @@ class flomniGuiTools:
             self.pdf_viewer = self.gui.flomni.new(widget="PdfViewerWidget")
 
         # --- Load PDF ---------------------------------------------------------
-        self.pdf_viewer.PdfViewerWidget.load_pdf(str(pdf_file.resolve()))
+        self.pdf_viewer.load_pdf(str(pdf_file.resolve()))
         print(f"\nLoaded: {pdf_file.name}\n")
 
-
     def _flomnicam_check_device_exists(self, device):
         try:
             device
@@ -179,7 +179,7 @@ class flomniGuiTools:
         if self._flomnigui_check_attribute_not_exists("progressbar"):
             self.flomnigui_remove_all_docks()
             # Add a new dock with a RingProgressBar widget
-            self.progressbar = self.gui.flomni.new("progressbar").new("RingProgressBar")
+            self.progressbar = self.gui.flomni.new("RingProgressBar")
             # Customize the size of the progress ring
             self.progressbar.set_line_widths(20)
             # Disable automatic updates and manually set the self.progressbar value
@@ -194,7 +194,7 @@ class flomniGuiTools:
             # Set the values of the rings to 50, 75, and 25 from outer to inner ring
             # self.progressbar.set_value([50, 75])
             # Add a new dock with a TextBox widget
-            self.text_box = self.gui.flomni.new(name="progress_text").new("TextBox")
+            self.text_box = self.gui.flomni.new("TextBox")
 
         self._flomnigui_update_progress()
 
@@ -220,6 +220,7 @@ if __name__ == "__main__":
     client.start()
     client.gui = BECGuiClient()
 
-    flomni_gui = flomniGuiTools(client)
+    flomni_gui = flomniGuiTools()
+    flomni_gui.set_client(client)
     flomni_gui.flomnigui_show_gui()
     flomni_gui.flomnigui_show_progress()

csaxs_bec/bec_ipython_client/plugins/flomni/x_ray_eye_align.py

@@ -5,16 +5,20 @@ import os
 import time
 from typing import TYPE_CHECKING
 
+import numpy as np
+
 from bec_lib import bec_logger
 
-from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
 
 logger = bec_logger.logger
 # import builtins to avoid linter errors
 bec = builtins.__dict__.get("bec")
 dev = builtins.__dict__.get("dev")
-umv = builtins.__dict__.get("umv")
-umvr = builtins.__dict__.get("umvr")
+scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 if TYPE_CHECKING:
     from bec_ipython_client.plugins.flomni import Flomni
@@ -22,7 +26,7 @@ if TYPE_CHECKING:
 
 class XrayEyeAlign:
     # pixel calibration, multiply to get mm
-    labview=False
+    test_wo_movements = True
     PIXEL_CALIBRATION = 0.1 / 113  # .2 with binning
 
     def __init__(self, client, flomni: Flomni) -> None:
@@ -34,209 +38,194 @@ class XrayEyeAlign:
         self.flomni.reset_correction()
         self.flomni.reset_tomo_alignment_fit()
 
+    @property
+    def gui(self):
+        return self.flomni.xeyegui
+
     def _reset_init_values(self):
         self.shift_xy = [0, 0]
         self._xray_fov_xy = [0, 0]
 
-    def save_frame(self):
-        epics_put("XOMNYI-XEYE-SAVFRAME:0", 1)
+    def update_frame(self, keep_shutter_open=False):
 
-    def update_frame(self,keep_shutter_open=False):
-        if self.labview:
-            epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
-            
-        if not self.labview:
-            self.flomni.flomnigui_show_xeyealign()
-            if not dev.cam_xeye.live_mode:
-                dev.cam_xeye.live_mode = True
+        # self.flomni.flomnigui_show_xeyealign()
+        if not dev.cam_xeye.live_mode_enabled.get():
+            dev.cam_xeye.live_mode_enabled.put(True)
 
-        epics_put("XOMNYI-XEYE-ACQ:0", 1)
-        if self.labview:
-            # wait for start live
-            while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
-                time.sleep(0.5)
-                print("waiting for live view to start...")
+        self.gui.on_live_view_enabled(True)
 
-        fshopen()
-
-        if self.labview:
-            epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
-
-            while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
-                print("waiting for new frame...")
-                time.sleep(0.5)
+        dev.omnyfsh.fshopen()
 
         time.sleep(0.5)
         # stop live view
         if not keep_shutter_open:
-            epics_put("XOMNYI-XEYE-ACQ:0", 0)
+            self.gui.on_live_view_enabled(False)
             time.sleep(0.1)
-            fshclose()
-            print("got new frame")
+            dev.omnyfsh.fshclose()
+            print("Received new frame.")
         else:
             print("Staying in live view, shutter is and remains open!")
 
     def tomo_rotate(self, val: float):
-        # pylint: disable=undefined-variable
-        umv(self.device_manager.devices.fsamroy, val)
+        if not self.test_wo_movements:
+            umv(self.device_manager.devices.fsamroy, val)
 
     def get_tomo_angle(self):
         return self.device_manager.devices.fsamroy.readback.get()
 
     def update_fov(self, k: int):
-        self._xray_fov_xy[0] = max(epics_get(f"XOMNYI-XEYE-XWIDTH_X:{k}"), self._xray_fov_xy[0])
-        self._xray_fov_xy[1] = max(0, self._xray_fov_xy[0])
+        self._xray_fov_xy[0] = max(
+            getattr(dev.omny_xray_gui, f"width_x_{k}").get(), self._xray_fov_xy[0]
+        )
+        self._xray_fov_xy[1] = max(
+            getattr(dev.omny_xray_gui, f"width_y_{k}").get(), self._xray_fov_xy[1]
+        )
 
-    @property
-    def movement_buttons_enabled(self):
-        return [epics_get("XOMNYI-XEYE-ENAMVX:0"), epics_get("XOMNYI-XEYE-ENAMVY:0")]
-
-    @movement_buttons_enabled.setter
-    def movement_buttons_enabled(self, enabled: bool):
-        enabled = int(enabled)
-        epics_put("XOMNYI-XEYE-ENAMVX:0", enabled)
-        epics_put("XOMNYI-XEYE-ENAMVY:0", enabled)
+    def movement_buttons_enabled(self, enablex: bool, enabley: bool):
+        self.gui.on_motors_enable(enablex, enabley)
 
     def send_message(self, msg: str):
-        epics_put("XOMNYI-XEYE-MESSAGE:0.DESC", msg)
+        print(f"In alginment GUI: {msg}")
+        self.gui.user_message = msg
 
-    def align(self,keep_shutter_open=False):
+    def align(self, keep_shutter_open=False):
+        self.flomni.flomnigui_show_xeyealign()
         if not keep_shutter_open:
-            print("This routine can be called with paramter keep_shutter_open=True to keep the shutter always open")
+            print(
+                "This routine can be called with paramter keep_shutter_open=True to keep the shutter always open"
+            )
         self.send_message("Getting things ready. Please wait...")
 
-        #potential unresolved movement requests to zero
-        epics_put("XOMNYI-XEYE-MVX:0", 0)
-        epics_put("XOMNYI-XEYE-MVY:0", 0)
+        self.gui.enable_submit_button(False)
+
+        # Initialize xray align device
+        # clear potential pending movement requests
+        dev.omny_xray_gui.mvx.set(0)
+        dev.omny_xray_gui.mvy.set(0)
+        # reset submit channel
+        dev.omny_xray_gui.submit.set(0)
+
+        self.movement_buttons_enabled(False, False)
 
         # reset shift xy and fov params
         self._reset_init_values()
 
         self.flomni.lights_off()
 
-        self.flomni.flomnigui_show_xeyealign()
-        self.flomni.flomnigui_raise()
+        # self.flomni.flomnigui_show_xeyealign()
+        # self.flomni.flomnigui_raise()
 
-        self.tomo_rotate(0)
-        epics_put("XOMNYI-XEYE-ANGLE:0", 0)
+        if not self.test_wo_movements:
+            self.tomo_rotate(0)
 
-        self.flomni.feye_in()
+            self.flomni.feye_in()
 
         self.flomni.laser_tracker_on()
 
         self.flomni.feedback_enable_with_reset()
 
         # disable movement buttons
-        self.movement_buttons_enabled = False
+        self.movement_buttons_enabled(False, False)
 
         sample_name = self.flomni.sample_get_name(0)
-        epics_put("XOMNYI-XEYE-SAMPLENAME:0.DESC", sample_name)
+        self.gui.sample_name = sample_name
 
         # this makes sure we are in a defined state
         self.flomni.feedback_disable()
 
-        epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
+        if not self.test_wo_movements:
+            self.flomni.fosa_out()
 
-        self.flomni.fosa_out()
+            fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
+            umv(dev.fsamx, fsamx_in - 0.25)
 
-        fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
-        umv(dev.fsamx, fsamx_in - 0.25)
+            self.flomni.ffzp_in()
 
-        self.flomni.ffzp_in()
         self.update_frame(keep_shutter_open)
 
-        # enable submit buttons
-        self.movement_buttons_enabled = False
-        epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
-        epics_put("XOMNYI-XEYE-STEP:0", 0)
+        self.gui.enable_submit_button(True)
+        dev.omny_xray_gui.step.set(0).wait()
         self.send_message("Submit center value of FZP.")
 
         k = 0
         while True:
-            if epics_get("XOMNYI-XEYE-SUBMIT:0") == 1:
-                val_x = epics_get(f"XOMNYI-XEYE-XVAL_X:{k}") / 2 * self.PIXEL_CALIBRATION  # in mm
-                self.alignment_values[k] = val_x
+            if dev.omny_xray_gui.submit.get() == 1:
+
+                self.alignment_values[k] = (
+                    getattr(dev.omny_xray_gui, f"xval_x_{k}").get() / 2 * self.PIXEL_CALIBRATION
+                )  # in mm
                 print(f"Clicked position {k}: x {self.alignment_values[k]}")
                 rtx_position = dev.rtx.readback.get() / 1000
                 print(f"Current rtx position {rtx_position}")
                 self.alignment_values[k] -= rtx_position
                 print(f"Corrected position {k}: x {self.alignment_values[k]}")
-
+                # reset submit channel
+                dev.omny_xray_gui.submit.set(0)
                 if k == 0:  # received center value of FZP
                     self.send_message("please wait ...")
-                    self.movement_buttons_enabled = False
-                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
+                    self.movement_buttons_enabled(False, False)
+                    self.gui.enable_submit_button(False)
 
                     self.flomni.feedback_disable()
-                    fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
-                    umv(dev.fsamx, fsamx_in)
+                    if not self.test_wo_movements:
+                        fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
+                        umv(dev.fsamx, fsamx_in)
 
-                    self.flomni.foptics_out()
+                        self.flomni.foptics_out()
 
-                    self.flomni.feedback_disable()
-                    umv(dev.fsamx, fsamx_in - 0.25)
+                        time.sleep(0.5)
 
-                    if self.labview:
-                        self.update_frame(keep_shutter_open)
-                        epics_put("XOMNYI-XEYE-RECBG:0", 1)
-                        while epics_get("XOMNYI-XEYE-RECBG:0") == 1:
-                            time.sleep(0.5)
-                            print("waiting for background frame...")
-
-                    umv(dev.fsamx, fsamx_in)
-                    time.sleep(0.5)
                     self.flomni.feedback_enable_with_reset()
 
                     self.update_frame(keep_shutter_open)
-                    self.send_message("Adjust sample height and submit center")
-                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
-                    self.movement_buttons_enabled = True
+                    self.send_message("Step 1/5: Adjust sample height and submit center")
+                    self.gui.enable_submit_button(True)
+                    self.movement_buttons_enabled(True, True)
 
                 elif 1 <= k < 5:  # received sample center value at samroy 0 ... 315
                     self.send_message("please wait ...")
-                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
-                    self.movement_buttons_enabled = False
+                    self.gui.enable_submit_button(False)
+                    self.movement_buttons_enabled(False, False)
 
                     umv(dev.rtx, 0)
                     self.tomo_rotate(k * 45)
-                    epics_put("XOMNYI-XEYE-ANGLE:0", self.get_tomo_angle())
+                    dev.omny_xray_gui.angle.set(self.get_tomo_angle())
                     self.update_frame(keep_shutter_open)
-                    self.send_message("Submit sample center")
-                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
-                    epics_put("XOMNYI-XEYE-ENAMVX:0", 1)
+                    self.send_message(f"Step {k+1}/5: Submit sample center")
+                    self.gui.enable_submit_button(True)
+                    self.movement_buttons_enabled(True, False)
                     self.update_fov(k)
 
                 elif k == 5:  # received sample center value at samroy 270 and done
                     self.send_message("done...")
-                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
-                    self.movement_buttons_enabled = False
+                    self.gui.enable_submit_button(False)
+                    self.movement_buttons_enabled(False, False)
                     self.update_fov(k)
                     break
 
                 k += 1
-                epics_put("XOMNYI-XEYE-STEP:0", k)
+                dev.omny_xray_gui.step.set(k)
 
-            _xrayeyalignmvx = epics_get("XOMNYI-XEYE-MVX:0")
+            _xrayeyalignmvx = dev.omny_xray_gui.mvx.get()
             if _xrayeyalignmvx != 0:
                 umvr(dev.rtx, _xrayeyalignmvx)
                 print(f"Current rtx position {dev.rtx.readback.get() / 1000}")
-                epics_put("XOMNYI-XEYE-MVX:0", 0)
-                if k > 0:
-                    epics_put(f"XOMNYI-XEYE-STAGEPOSX:{k}", dev.rtx.readback.get() / 1000)
                 time.sleep(3)
+                dev.omny_xray_gui.mvx.set(0)
                 self.update_frame(keep_shutter_open)
 
             if k < 2:
                 # allow movements, store movements to calculate center
-                _xrayeyalignmvy = epics_get("XOMNYI-XEYE-MVY:0")
+                _xrayeyalignmvy = dev.omny_xray_gui.mvy.get()
                 if _xrayeyalignmvy != 0:
                     self.flomni.feedback_disable()
-                    umvr(dev.fsamy, _xrayeyalignmvy / 1000)
+                    if not self.test_wo_movements:
+                        umvr(dev.fsamy, _xrayeyalignmvy / 1000)
                     time.sleep(2)
-                    epics_put("XOMNYI-XEYE-MVY:0", 0)
+                    dev.omny_xray_gui.mvy.set(0)
                     self.flomni.feedback_enable_with_reset()
                     self.update_frame(keep_shutter_open)
-            time.sleep(0.2)
+            time.sleep(0.1)
 
         self.write_output()
         fovx = self._xray_fov_xy[0] * self.PIXEL_CALIBRATION * 1000 / 2
@@ -246,22 +235,17 @@ class XrayEyeAlign:
 
         umv(dev.rtx, 0)
 
-        # free camera        
-        if self.labview:
-            epics_put("XOMNYI-XEYE-ACQ:0", 2)
-        if keep_shutter_open and not self.labview:
-            if self.flomni.OMNYTools.yesno("Close the shutter now?","y"):
-                fshclose()
-                epics_put("XOMNYI-XEYE-ACQ:0", 0)
-        if not self.labview:
-            self.flomni.flomnigui_idle()
-  
+        if keep_shutter_open:
+            if self.flomni.OMNYTools.yesno("Close the shutter now?", "y"):
+                dev.omnyfsh.fshclose()
+                self.gui.on_live_view_enabled(False)
+                print("setting 'XOMNYI-XEYE-ACQ:0'")
 
         print(
             f"The largest field of view from the xrayeyealign was \nfovx = {fovx:.0f} microns, fovy"
             f" = {fovy:.0f} microns"
         )
-        print("Use the matlab routine to FIT the current alignment...")
+        print("Check the fit in the GUI...")
 
         print("Then LOAD ALIGNMENT PARAMETERS by running flomni.read_alignment_offset()\n")
 
@@ -269,9 +253,33 @@ class XrayEyeAlign:
         file = os.path.expanduser("~/Data10/specES1/internal/xrayeye_alignmentvalues")
         if not os.path.exists(file):
             os.makedirs(os.path.dirname(file), exist_ok=True)
+
         with open(file, "w") as alignment_values_file:
             alignment_values_file.write("angle\thorizontal\n")
+
+            # Initialize an empty list to store fovx values
+            fovx_list = []
+            fovx_offsets = np.zeros(5)  # holds offsets for k = 1..5
+
             for k in range(1, 6):
                 fovx_offset = self.alignment_values[0] - self.alignment_values[k]
+                fovx_offsets[k - 1] = fovx_offset  # store in array
+
+                fovx_x = (k - 1) * 45
+                fovx_list.append([fovx_x, fovx_offset * 1000])  # Append the data to the list
+
                 print(f"Writing to file new alignment: number {k}, value x {fovx_offset}")
-                alignment_values_file.write(f"{(k-1)*45}\t{fovx_offset*1000}\n")
+                alignment_values_file.write(f"{fovx_x}\t{fovx_offset * 1000}\n")
+
+            # Now build final numpy array:
+            data = np.array(
+                [
+                    [0, 45, 90, 135, 180],  # angles
+                    fovx_offsets * 1000,  # fovx_offset values
+                    [0, 0, 0, 0, 0],
+                ]
+            )
+        self.gui.submit_fit_array(data)
+        print(f"fit submited with {data}")
+        print("todo mirko: submitted data is 1000 fold in amplitude")
+        # self.flomni.flomnigui_show_xeyealign_fittab()

csaxs_bec/bec_ipython_client/plugins/omny/gui_tools.py

@@ -1,14 +1,14 @@
 import builtins
 
-from bec_widgets.cli.client import BECDockArea
-
 # from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
 
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 
 class OMNYGuiToolsError(Exception):
@@ -19,7 +19,7 @@ class OMNYGuiTools:
 
     def __init__(self, client):
         self.gui = getattr(client, "gui", None)
-        self.gui_window = self.gui.windows['main'].widget
+        self.gui_window = self.gui.windows["main"].widget
         self.fig200 = None
         self.fig201 = None
         self.fig202 = None
@@ -137,7 +137,9 @@ class OMNYGuiTools:
         if self.progressbar is None:
             self.omnygui_remove_all_docks()
             # Add a new dock with a RingProgressBar widget
-            self.progressbar = self.gui_window.add_dock(name="progress").add_widget("RingProgressBar")
+            self.progressbar = self.gui_window.add_dock(name="progress").add_widget(
+                "RingProgressBar"
+            )
             # Customize the size of the progress ring
             self.progressbar.set_line_widths(20)
             # Disable automatic updates and manually set the self.progressbar value

csaxs_bec/bec_ipython_client/plugins/omny/omny.py

@@ -27,9 +27,10 @@ logger = bec_logger.logger
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
 
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 class OMNYInitError(Exception):
     pass

csaxs_bec/bec_ipython_client/plugins/omny/omny_general_tools.py

@@ -16,8 +16,10 @@ from rich.table import Table
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 
 class OMNYToolsError(Exception):

csaxs_bec/bec_ipython_client/plugins/omny/omny_sample_transfer_mixin.py

@@ -16,8 +16,10 @@ from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fsh
 if builtins.__dict__.get("bec") is not None:
     bec = builtins.__dict__.get("bec")
     dev = builtins.__dict__.get("dev")
-    umv = builtins.__dict__.get("umv")
-    umvr = builtins.__dict__.get("umvr")
+    scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 
 class OMNYTransferError(Exception):

csaxs_bec/bec_ipython_client/plugins/omny/x_ray_eye_align.py

@@ -13,8 +13,10 @@ logger = bec_logger.logger
 # import builtins to avoid linter errors
 bec = builtins.__dict__.get("bec")
 dev = builtins.__dict__.get("dev")
-umv = builtins.__dict__.get("umv")
-umvr = builtins.__dict__.get("umvr")
+scans = builtins.__dict__.get("scans")
+
+def umv(*args):
+    return scans.umv(*args, relative=False)
 
 if TYPE_CHECKING:
     from bec_ipython_client.plugins.omny import OMNY

csaxs_bec/bec_ipython_client/startup/post_startup.py

@@ -30,29 +30,74 @@ logger = bec_logger.logger
 
 logger.info("Using the cSAXS startup script.")
 
-# pylint: disable=import-error
-_args = _main_dict["args"]
-
-_session_name = "cSAXS"
-if _args.session.lower() == "lamni":
-    from csaxs_bec.bec_ipython_client.plugins.cSAXS import *
-    from csaxs_bec.bec_ipython_client.plugins.LamNI import *
-
-    _session_name = "LamNI"
-    lamni = LamNI(bec)
-    logger.success("LamNI session loaded.")
-
-elif _args.session.lower() == "csaxs":
-    print("Loading cSAXS session")
-    from csaxs_bec.bec_ipython_client.plugins.cSAXS import *
-
-    logger.success("cSAXS session loaded.")
 
 from csaxs_bec.bec_ipython_client.plugins.tool_box.debug_tools import DebugTools
 
 debug = DebugTools()
 logger.success("Debug tools loaded. Use 'debug' to access them.")
 
+# pylint: disable=import-error
+_args = _main_dict["args"]
+
+_session_name = "cSAXS"
+
+print("Loading cSAXS session")
+from csaxs_bec.bec_ipython_client.plugins.cSAXS.cSAXS import cSAXS
+csaxs = cSAXS(bec)
+logger.success("cSAXS session loaded.")
+
+
+if _args.session.lower() == "lamni":
+    from csaxs_bec.bec_ipython_client.plugins.LamNI import LamNI
+
+    _session_name = "LamNI"
+    lamni = LamNI(bec)
+    logger.success("LamNI session loaded.")
+    print(r"""
+    ██████╗ ███████╗ ██████╗     ██╗      █████╗ ███╗   ███╗███╗   ██╗██╗
+    ██╔══██╗██╔════╝██╔════╝     ██║     ██╔══██╗████╗ ████║████╗  ██║██║
+    ██████╔╝█████╗  ██║          ██║     ███████║██╔████╔██║██╔██╗ ██║██║
+    ██╔══██╗██╔══╝  ██║          ██║     ██╔══██║██║╚██╔╝██║██║╚██╗██║██║
+    ██████╔╝███████╗╚██████╗     ███████╗██║  ██║██║ ╚═╝ ██║██║ ╚████║██║
+    ╚═════╝ ╚══════╝ ╚═════╝     ╚══════╝╚═╝  ╚═╝╚═╝     ╚═╝╚═╝  ╚═══╝╚═╝
+                                                                            
+                                B E C   L a m N I
+    """)
+
+elif _args.session.lower() == "omny":
+    from csaxs_bec.bec_ipython_client.plugins.flomni import OMNY
+
+    _session_name = "OMNY"
+    omny = OMNY(bec)
+    logger.success("OMNY session loaded.")
+    print(r"""
+    ██████╗ ███████╗ ██████╗      ██████╗ ███╗   ███╗███╗   ██╗██╗   ██╗
+    ██╔══██╗██╔════╝██╔════╝     ██╔═══██╗████╗ ████║████╗  ██║╚██╗ ██╔╝
+    ██████╔╝█████╗  ██║          ██║   ██║██╔████╔██║██╔██╗ ██║ ╚████╔╝ 
+    ██╔══██╗██╔══╝  ██║          ██║   ██║██║╚██╔╝██║██║╚██╗██║  ╚██╔╝  
+    ██████╔╝███████╗╚██████╗     ╚██████╔╝██║ ╚═╝ ██║██║ ╚████║   ██║   
+    ╚═════╝ ╚══════╝ ╚═════╝      ╚═════╝ ╚═╝     ╚═╝╚═╝  ╚═══╝   ╚═╝   
+                                                                        
+                                B E C   O M N Y
+    """)
+
+elif _args.session.lower() == "flomni":
+    from csaxs_bec.bec_ipython_client.plugins.flomni import Flomni
+
+    _session_name = "flomni"
+    flomni = Flomni(bec)
+    logger.success("flomni session loaded.")
+    print(r"""
+    ██████╗ ███████╗ ██████╗     ███████╗██╗      ██████╗ ███╗   ███╗███╗   ██╗██╗
+    ██╔══██╗██╔════╝██╔════╝     ██╔════╝██║     ██╔═══██╗████╗ ████║████╗  ██║██║
+    ██████╔╝█████╗  ██║          █████╗  ██║     ██║   ██║██╔████╔██║██╔██╗ ██║██║
+    ██╔══██╗██╔══╝  ██║          ██╔══╝  ██║     ██║   ██║██║╚██╔╝██║██║╚██╗██║██║
+    ██████╔╝███████╗╚██████╗     ██║     ███████╗╚██████╔╝██║ ╚═╝ ██║██║ ╚████║██║
+    ╚═════╝ ╚══════╝ ╚═════╝     ╚═╝     ╚══════╝ ╚═════╝ ╚═╝     ╚═╝╚═╝  ╚═══╝╚═╝
+                                                                                    
+                                B E C   f l O M N I
+    """)
+
 
 # SETUP BEAMLINE INFO
 from bec_ipython_client.plugins.SLS.sls_info import OperatorInfo, SLSInfo

csaxs_bec/bec_widgets/widgets/client.py

@@ -13,69 +13,10 @@ logger = bec_logger.logger
 
 
 _Widgets = {
-    "OmnyAlignment": "OmnyAlignment",
     "XRayEye": "XRayEye",
 }
 
 
-class OmnyAlignment(RPCBase):
-    @property
-    @rpc_call
-    def enable_live_view(self):
-        """
-        None
-        """
-
-    @enable_live_view.setter
-    @rpc_call
-    def enable_live_view(self):
-        """
-        None
-        """
-
-    @property
-    @rpc_call
-    def user_message(self):
-        """
-        None
-        """
-
-    @user_message.setter
-    @rpc_call
-    def user_message(self):
-        """
-        None
-        """
-
-    @property
-    @rpc_call
-    def sample_name(self):
-        """
-        None
-        """
-
-    @sample_name.setter
-    @rpc_call
-    def sample_name(self):
-        """
-        None
-        """
-
-    @property
-    @rpc_call
-    def enable_move_buttons(self):
-        """
-        None
-        """
-
-    @enable_move_buttons.setter
-    @rpc_call
-    def enable_move_buttons(self):
-        """
-        None
-        """
-
-
 class XRayEye(RPCBase):
     @rpc_call
     def active_roi(self) -> "BaseROI | None":
@@ -83,20 +24,6 @@ class XRayEye(RPCBase):
         Return the currently active ROI, or None if no ROI is active.
         """
 
-    @property
-    @rpc_call
-    def enable_live_view(self):
-        """
-        Get or set the live view enabled state.
-        """
-
-    @enable_live_view.setter
-    @rpc_call
-    def enable_live_view(self):
-        """
-        Get or set the live view enabled state.
-        """
-
     @property
     @rpc_call
     def user_message(self):
@@ -111,6 +38,30 @@ class XRayEye(RPCBase):
         None
         """
 
+    @rpc_call
+    def on_live_view_enabled(self, enabled: "bool"):
+        """
+        None
+        """
+
+    @rpc_call
+    def on_motors_enable(self, x_enable: "bool", y_enable: "bool"):
+        """
+        Enable/Disable motor controls
+
+        Args:
+            x_enable(bool): enable x motor controls
+            y_enable(bool): enable y motor controls
+        """
+
+    @rpc_call
+    def enable_submit_button(self, enable: "bool"):
+        """
+        Enable/disable submit button.
+        Args:
+            enable(int): -1 disable else enable
+        """
+
     @property
     @rpc_call
     def sample_name(self):
@@ -139,6 +90,18 @@ class XRayEye(RPCBase):
         None
         """
 
+    @rpc_call
+    def switch_tab(self, tab: "str"):
+        """
+        None
+        """
+
+    @rpc_call
+    def submit_fit_array(self, fit_array):
+        """
+        None
+        """
+
 
 class XRayEye2DControl(RPCBase):
     @rpc_call
@@ -146,3 +109,15 @@ class XRayEye2DControl(RPCBase):
         """
         Cleanup the BECConnector
         """
+
+    @rpc_call
+    def attach(self):
+        """
+        None
+        """
+
+    @rpc_call
+    def detach(self):
+        """
+        Detach the widget from its parent dock widget (if widget is in the dock), making it a floating widget.
+        """

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.py

@@ -1,140 +0,0 @@
-
-
-from typing import TypedDict
-from bec_widgets.utils.error_popups import SafeSlot
-import os
-from bec_widgets.utils.bec_widget import BECWidget
-from bec_widgets.utils.ui_loader import UILoader
-from qtpy.QtWidgets import QWidget, QPushButton, QLineEdit, QLabel, QVBoxLayout
-from bec_qthemes import material_icon
-from bec_lib.logger import bec_logger
-
-logger = bec_logger.logger 
-
-
-# class OmnyAlignmentUIComponents(TypedDict):
-#     moveRightButton: QPushButton
-#     moveLeftButton: QPushButton
-#     moveUpButton: QPushButton
-#     moveDownButton: QPushButton
-#     image: Image
-
-
-class OmnyAlignment(BECWidget, QWidget):
-    USER_ACCESS = ["enable_live_view", "enable_live_view.setter", "user_message", "user_message.setter","sample_name", "sample_name.setter", "enable_move_buttons", "enable_move_buttons.setter"]
-    PLUGIN = True
-    ui_file = "./omny_alignment.ui"
-
-    def __init__(self, parent=None, **kwargs):
-        super().__init__(parent=parent, **kwargs)
-        
-        self._load_ui()
-
-    def _load_ui(self):
-        current_path = os.path.dirname(__file__)
-        self.ui = UILoader(self).loader(os.path.join(current_path, self.ui_file))
-        layout = QVBoxLayout()
-        layout.addWidget(self.ui)
-        self.setLayout(layout)
-
-        icon_options = {"size": (16, 16), "convert_to_pixmap": False}
-        self.ui.moveRightButton.setText("")
-        self.ui.moveRightButton.setIcon(
-            material_icon(icon_name="keyboard_arrow_right", **icon_options)
-        )
-
-        self.ui.moveLeftButton.setText("")
-        self.ui.moveLeftButton.setIcon(
-            material_icon(icon_name="keyboard_arrow_left", **icon_options)
-        )
-
-        self.ui.moveUpButton.setText("")
-        self.ui.moveUpButton.setIcon(
-            material_icon(icon_name="keyboard_arrow_up", **icon_options)
-        )
-
-        self.ui.moveDownButton.setText("")
-        self.ui.moveDownButton.setIcon(
-            material_icon(icon_name="keyboard_arrow_down", **icon_options)
-        )
-
-        self.ui.confirmButton.setText("OK")
-
-
-        self.ui.liveViewSwitch.enabled.connect(self.on_live_view_enabled)
-
-        # self.ui.moveUpButton.clicked.connect(self.on_move_up)
-
-
-    @property
-    def enable_live_view(self):
-        return self.ui.liveViewSwitch.checked
-    
-    @enable_live_view.setter
-    def enable_live_view(self, enable:bool):
-        self.ui.liveViewSwitch.checked = enable
-
-
-    @property
-    def user_message(self):
-        return self.ui.messageLineEdit.text()
-    
-    @user_message.setter
-    def user_message(self, message:str):
-        self.ui.messageLineEdit.setText(message)
-
-    @property
-    def sample_name(self):
-        return self.ui.sampleLineEdit.text()
-    
-    @sample_name.setter
-    def sample_name(self, message:str):
-        self.ui.sampleLineEdit.setText(message)
-
-
-    @SafeSlot(bool)
-    def on_live_view_enabled(self, enabled:bool):
-        from bec_widgets.widgets.plots.image.image import Image
-        logger.info(f"Live view is enabled: {enabled}")
-        image: Image = self.ui.image
-        if enabled:
-            image.image("cam_xeye")
-            return
-        
-        image.disconnect_monitor("cam_xeye")
-
-
-    @property
-    def enable_move_buttons(self):
-        move_up:QPushButton = self.ui.moveUpButton
-        move_down:QPushButton = self.ui.moveDownButton
-        move_left:QPushButton = self.ui.moveLeftButton
-        move_right:QPushButton = self.ui.moveRightButton
-        return move_up.isEnabled() and move_down.isEnabled() and move_left.isEnabled() and move_right.isEnabled()
-    
-    @enable_move_buttons.setter
-    def enable_move_buttons(self, enabled:bool):
-        move_up:QPushButton = self.ui.moveUpButton
-        move_down:QPushButton = self.ui.moveDownButton
-        move_left:QPushButton = self.ui.moveLeftButton
-        move_right:QPushButton = self.ui.moveRightButton
-
-        move_up.setEnabled(enabled)
-        move_down.setEnabled(enabled)
-        move_left.setEnabled(enabled)
-        move_right.setEnabled(enabled)
-
-        
-
-
-
-
-if __name__ == "__main__":
-    from qtpy.QtWidgets import QApplication
-    import sys
-
-    app = QApplication(sys.argv)
-    widget = OmnyAlignment()
-
-    widget.show()
-    sys.exit(app.exec_())

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.pyproject

@@ -1 +0,0 @@
-{'files': ['omny_alignment.py']}

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.ui

@@ -1,125 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<ui version="4.0">
- <class>Form</class>
- <widget class="QWidget" name="Form">
-  <property name="geometry">
-   <rect>
-    <x>0</x>
-    <y>0</y>
-    <width>988</width>
-    <height>821</height>
-   </rect>
-  </property>
-  <property name="windowTitle">
-   <string>Form</string>
-  </property>
-  <layout class="QGridLayout" name="gridLayout_3">
-   <item row="2" column="2">
-    <layout class="QGridLayout" name="gridLayout">
-     <item row="1" column="2">
-      <widget class="QPushButton" name="moveRightButton">
-       <property name="text">
-        <string>PushButton</string>
-       </property>
-      </widget>
-     </item>
-     <item row="1" column="0">
-      <widget class="QPushButton" name="moveLeftButton">
-       <property name="text">
-        <string>PushButton</string>
-       </property>
-      </widget>
-     </item>
-     <item row="0" column="1">
-      <widget class="QPushButton" name="moveUpButton">
-       <property name="text">
-        <string>Up</string>
-       </property>
-      </widget>
-     </item>
-     <item row="2" column="1">
-      <widget class="QPushButton" name="moveDownButton">
-       <property name="text">
-        <string>PushButton</string>
-       </property>
-      </widget>
-     </item>
-     <item row="1" column="1">
-      <widget class="QPushButton" name="confirmButton">
-       <property name="text">
-        <string>PushButton</string>
-       </property>
-      </widget>
-     </item>
-    </layout>
-   </item>
-   <item row="2" column="0">
-    <layout class="QGridLayout" name="gridLayout_2">
-     <item row="0" column="1">
-      <widget class="QLineEdit" name="sampleLineEdit"/>
-     </item>
-     <item row="1" column="1">
-      <widget class="QLineEdit" name="messageLineEdit"/>
-     </item>
-     <item row="0" column="0">
-      <widget class="QLabel" name="label">
-       <property name="text">
-        <string>Sample</string>
-       </property>
-      </widget>
-     </item>
-     <item row="1" column="0">
-      <widget class="QLabel" name="label_2">
-       <property name="text">
-        <string>Message</string>
-       </property>
-      </widget>
-     </item>
-    </layout>
-   </item>
-   <item row="1" column="0" colspan="3">
-    <widget class="Image" name="image">
-     <property name="enable_toolbar" stdset="0">
-      <bool>false</bool>
-     </property>
-     <property name="inner_axes" stdset="0">
-      <bool>false</bool>
-     </property>
-     <property name="monitor" stdset="0">
-      <string>cam_xeye</string>
-     </property>
-     <property name="rotation" stdset="0">
-      <number>3</number>
-     </property>
-    </widget>
-   </item>
-   <item row="0" column="3">
-    <widget class="ToggleSwitch" name="liveViewSwitch"/>
-   </item>
-   <item row="0" column="2">
-    <widget class="QLabel" name="label_3">
-     <property name="text">
-      <string>Live View</string>
-     </property>
-     <property name="alignment">
-      <set>Qt::AlignmentFlag::AlignRight|Qt::AlignmentFlag::AlignTrailing|Qt::AlignmentFlag::AlignVCenter</set>
-     </property>
-    </widget>
-   </item>
-  </layout>
- </widget>
- <customwidgets>
-  <customwidget>
-   <class>Image</class>
-   <extends>QWidget</extends>
-   <header>image</header>
-  </customwidget>
-  <customwidget>
-   <class>ToggleSwitch</class>
-   <extends>QWidget</extends>
-   <header>toggle_switch</header>
-  </customwidget>
- </customwidgets>
- <resources/>
- <connections/>
-</ui>

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment_plugin.py

@@ -1,54 +0,0 @@
-# Copyright (C) 2022 The Qt Company Ltd.
-# SPDX-License-Identifier: LicenseRef-Qt-Commercial OR BSD-3-Clause
-
-from qtpy.QtDesigner import QDesignerCustomWidgetInterface
-
-from bec_widgets.utils.bec_designer import designer_material_icon
-from csaxs_bec.bec_widgets.widgets.omny_alignment.omny_alignment import OmnyAlignment
-
-DOM_XML = """
-<ui language='c++'>
-    <widget class='OmnyAlignment' name='omny_alignment'>
-    </widget>
-</ui>
-"""
-
-
-class OmnyAlignmentPlugin(QDesignerCustomWidgetInterface):  # pragma: no cover
-    def __init__(self):
-        super().__init__()
-        self._form_editor = None
-
-    def createWidget(self, parent):
-        t = OmnyAlignment(parent)
-        return t
-
-    def domXml(self):
-        return DOM_XML
-
-    def group(self):
-        return ""
-
-    def icon(self):
-        return designer_material_icon(OmnyAlignment.ICON_NAME)
-
-    def includeFile(self):
-        return "omny_alignment"
-
-    def initialize(self, form_editor):
-        self._form_editor = form_editor
-
-    def isContainer(self):
-        return False
-
-    def isInitialized(self):
-        return self._form_editor is not None
-
-    def name(self):
-        return "OmnyAlignment"
-
-    def toolTip(self):
-        return "OmnyAlignment"
-
-    def whatsThis(self):
-        return self.toolTip()

csaxs_bec/bec_widgets/widgets/omny_alignment/register_omny_alignment.py

@@ -1,15 +0,0 @@
-def main():  # pragma: no cover
-    from qtpy import PYSIDE6
-
-    if not PYSIDE6:
-        print("PYSIDE6 is not available in the environment. Cannot patch designer.")
-        return
-    from PySide6.QtDesigner import QPyDesignerCustomWidgetCollection
-
-    from csaxs_bec.bec_widgets.widgets.omny_alignment.omny_alignment_plugin import OmnyAlignmentPlugin
-
-    QPyDesignerCustomWidgetCollection.addCustomWidget(OmnyAlignmentPlugin())
-
-
-if __name__ == "__main__":  # pragma: no cover
-    main()

csaxs_bec/bec_widgets/widgets/xray_eye/x_ray_eye.py

@@ -5,6 +5,7 @@ from bec_lib.endpoints import MessageEndpoints
 from bec_qthemes import material_icon
 from bec_widgets import BECWidget, SafeProperty, SafeSlot
 from bec_widgets.widgets.plots.image.image import Image
+from bec_widgets.widgets.plots.waveform.waveform import Waveform
 from bec_widgets.widgets.plots.image.setting_widgets.image_roi_tree import ROIPropertyTree
 from bec_widgets.widgets.plots.roi.image_roi import BaseROI, CircularROI, RectangularROI
 from bec_widgets.widgets.utility.toggle.toggle import ToggleSwitch
@@ -21,7 +22,10 @@ from qtpy.QtWidgets import (
     QToolButton,
     QVBoxLayout,
     QWidget,
+    QTextEdit,
+    QTabWidget,
 )
+import time
 
 logger = bec_logger.logger
 CAMERA = ("cam_xeye", "image")
@@ -33,46 +37,48 @@ class XRayEye2DControl(BECWidget, QWidget):
         self.get_bec_shortcuts()
         self._step_size = step_size
         self.root_layout = QGridLayout(self)
-        self.setStyleSheet("""
+        self.setStyleSheet(
+            """
         QToolButton {
         border: 1px solid;
         border-radius: 4px;
         }
-        """)
+        """
+        )
         # Up
         self.move_up_button = QToolButton(parent=self)
-        self.move_up_button.setIcon(material_icon('keyboard_double_arrow_up'))
+        self.move_up_button.setIcon(material_icon("keyboard_double_arrow_up"))
         self.root_layout.addWidget(self.move_up_button, 0, 2)
         # Up tweak button
         self.move_up_tweak_button = QToolButton(parent=self)
-        self.move_up_tweak_button.setIcon(material_icon('keyboard_arrow_up'))
+        self.move_up_tweak_button.setIcon(material_icon("keyboard_arrow_up"))
         self.root_layout.addWidget(self.move_up_tweak_button, 1, 2)
 
         # Left
         self.move_left_button = QToolButton(parent=self)
-        self.move_left_button.setIcon(material_icon('keyboard_double_arrow_left'))
+        self.move_left_button.setIcon(material_icon("keyboard_double_arrow_left"))
         self.root_layout.addWidget(self.move_left_button, 2, 0)
         # Left tweak button
         self.move_left_tweak_button = QToolButton(parent=self)
-        self.move_left_tweak_button.setIcon(material_icon('keyboard_arrow_left'))
+        self.move_left_tweak_button.setIcon(material_icon("keyboard_arrow_left"))
         self.root_layout.addWidget(self.move_left_tweak_button, 2, 1)
 
         # Right
         self.move_right_button = QToolButton(parent=self)
-        self.move_right_button.setIcon(material_icon('keyboard_double_arrow_right'))
+        self.move_right_button.setIcon(material_icon("keyboard_double_arrow_right"))
         self.root_layout.addWidget(self.move_right_button, 2, 4)
         # Right tweak button
         self.move_right_tweak_button = QToolButton(parent=self)
-        self.move_right_tweak_button.setIcon(material_icon('keyboard_arrow_right'))
+        self.move_right_tweak_button.setIcon(material_icon("keyboard_arrow_right"))
         self.root_layout.addWidget(self.move_right_tweak_button, 2, 3)
 
         # Down
         self.move_down_button = QToolButton(parent=self)
-        self.move_down_button.setIcon(material_icon('keyboard_double_arrow_down'))
+        self.move_down_button.setIcon(material_icon("keyboard_double_arrow_down"))
         self.root_layout.addWidget(self.move_down_button, 4, 2)
         # Down tweak button
         self.move_down_tweak_button = QToolButton(parent=self)
-        self.move_down_tweak_button.setIcon(material_icon('keyboard_arrow_down'))
+        self.move_down_tweak_button.setIcon(material_icon("keyboard_arrow_down"))
         self.root_layout.addWidget(self.move_down_tweak_button, 3, 2)
 
         # Connections
@@ -124,8 +130,20 @@ class XRayEye2DControl(BECWidget, QWidget):
 
 
 class XRayEye(BECWidget, QWidget):
-    USER_ACCESS = ["active_roi", "enable_live_view", "enable_live_view.setter", "user_message", "user_message.setter",
-                   "sample_name", "sample_name.setter", "enable_move_buttons", "enable_move_buttons.setter"]
+    USER_ACCESS = [
+        "active_roi",
+        "user_message",
+        "user_message.setter",
+        "on_live_view_enabled",
+        "on_motors_enable",
+        "enable_submit_button",
+        "sample_name",
+        "sample_name.setter",
+        "enable_move_buttons",
+        "enable_move_buttons.setter",
+        "switch_tab",
+        "submit_fit_array",
+    ]
     PLUGIN = True
 
     def __init__(self, parent=None, **kwargs):
@@ -136,28 +154,44 @@ class XRayEye(BECWidget, QWidget):
         self._make_connections()
 
         # Connection to redis endpoints
-        self.bec_dispatcher.connect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
+        self.bec_dispatcher.connect_slot(
+            self.getting_shutter_status, MessageEndpoints.device_readback("omnyfsh")
+        )
+        self.bec_dispatcher.connect_slot(
+            self.getting_camera_status, MessageEndpoints.device_read_configuration(CAMERA[0])
+        )
+
         self.connect_motors()
         self.resize(800, 600)
         QTimer.singleShot(0, self._init_gui_trigger)
 
     def _init_ui(self):
-        self.core_layout = QHBoxLayout(self)
+        self.root_layout = QVBoxLayout(self)
+        self.tab_widget = QTabWidget(parent=self)
+        self.root_layout.addWidget(self.tab_widget)
 
-        self.image = Image(parent=self)
-        self.image.enable_toolbar = False  # Disable default toolbar to not allow to user set anything
+        self.alignment_tab = QWidget(parent=self)
+        self.core_layout = QHBoxLayout(self.alignment_tab)
+
+        self.image = Image(parent=self.alignment_tab)
+        self.image.color_map = "CET-L2"
+        self.image.enable_toolbar = (
+            False  # Disable default toolbar to not allow to user set anything
+        )
         self.image.inner_axes = False  # Disable inner axes to maximize image area
-        self.image.plot_item.vb.invertY(True)  # #TODO Invert y axis to match logic of LabView GUI
+        self.image.enable_full_colorbar = True
+        self.image.invert_y = True  # Invert y axis to match image coordinates
 
         # Control panel on the right: vertical layout inside a fixed-width widget
-        self.control_panel = QWidget(parent=self)
+        self.control_panel = QWidget(parent=self.alignment_tab)
         self.control_panel_layout = QVBoxLayout(self.control_panel)
         self.control_panel_layout.setContentsMargins(0, 0, 0, 0)
         self.control_panel_layout.setSpacing(10)
 
         # ROI toolbar + Live toggle (header row)
-        self.roi_manager = ROIPropertyTree(parent=self, image_widget=self.image, compact=True,
-                                           compact_orientation="horizontal")
+        self.roi_manager = ROIPropertyTree(
+            parent=self, image_widget=self.image, compact=True, compact_orientation="horizontal"
+        )
         header_row = QHBoxLayout()
         header_row.setContentsMargins(0, 0, 0, 0)
         header_row.setSpacing(8)
@@ -166,16 +200,36 @@ class XRayEye(BECWidget, QWidget):
         self.live_preview_label = QLabel("Live Preview", parent=self)
         self.live_preview_toggle = ToggleSwitch(parent=self)
         self.live_preview_toggle.checked = False
-        header_row.addWidget(self.live_preview_label, 0, Qt.AlignVCenter)
-        header_row.addWidget(self.live_preview_toggle, 0, Qt.AlignVCenter)
+        header_row.addWidget(self.live_preview_label, 0, Qt.AlignmentFlag.AlignVCenter)
+        header_row.addWidget(self.live_preview_toggle, 0, Qt.AlignmentFlag.AlignVCenter)
         self.control_panel_layout.addLayout(header_row)
 
+        switch_row = QHBoxLayout()
+        switch_row.setContentsMargins(0, 0, 0, 0)
+        switch_row.setSpacing(8)
+        switch_row.addStretch()
+        self.camera_running_label = QLabel("Camera running", parent=self)
+        self.camera_running_toggle = ToggleSwitch(parent=self)
+        # self.camera_running_toggle.checked = False
+        self.camera_running_toggle.enabled.connect(self.camera_running_enabled)
+        self.shutter_label = QLabel("Shutter open", parent=self)
+        self.shutter_toggle = ToggleSwitch(parent=self)
+        # self.shutter_toggle.checked = False
+        self.shutter_toggle.enabled.connect(self.opening_shutter)
+        switch_row.addWidget(self.shutter_label, 0, Qt.AlignmentFlag.AlignVCenter)
+        switch_row.addWidget(self.shutter_toggle, 0, Qt.AlignmentFlag.AlignVCenter)
+        switch_row.addWidget(self.camera_running_label, 0, Qt.AlignmentFlag.AlignVCenter)
+        switch_row.addWidget(self.camera_running_toggle, 0, Qt.AlignmentFlag.AlignVCenter)
+        self.control_panel_layout.addLayout(switch_row)
+
         # separator
         self.control_panel_layout.addWidget(self._create_separator())
 
         # 2D Positioner (fixed size)
         self.motor_control_2d = XRayEye2DControl(parent=self)
-        self.control_panel_layout.addWidget(self.motor_control_2d, 0, Qt.AlignTop | Qt.AlignCenter)
+        self.control_panel_layout.addWidget(
+            self.motor_control_2d, 0, Qt.AlignmentFlag.AlignTop | Qt.AlignmentFlag.AlignCenter
+        )
 
         # separator
         self.control_panel_layout.addWidget(self._create_separator())
@@ -190,9 +244,8 @@ class XRayEye(BECWidget, QWidget):
         # Submit button
         self.submit_button = QPushButton("Submit", parent=self)
         # Add to layout form
-        step_size_form.addWidget(QLabel("Horizontal", parent=self), 0, 0)
+        step_size_form.addWidget(QLabel("Step Size", parent=self), 0, 0)
         step_size_form.addWidget(self.step_size, 0, 1)
-        step_size_form.addWidget(QLabel("Vertical", parent=self), 1, 0)
         step_size_form.addWidget(self.submit_button, 2, 0, 1, 2)
 
         # Add form to control panel
@@ -207,7 +260,8 @@ class XRayEye(BECWidget, QWidget):
         self.sample_name_line_edit.setReadOnly(True)
         form.addWidget(QLabel("Sample", parent=self), 0, 0)
         form.addWidget(self.sample_name_line_edit, 0, 1)
-        self.message_line_edit = QLineEdit(parent=self)
+        self.message_line_edit = QTextEdit(parent=self)
+        self.message_line_edit.setFixedHeight(60)
         self.message_line_edit.setReadOnly(True)
         form.addWidget(QLabel("Message", parent=self), 1, 0)
         form.addWidget(self.message_line_edit, 1, 1)
@@ -217,12 +271,46 @@ class XRayEye(BECWidget, QWidget):
         self.control_panel.adjustSize()
         p_hint = self.control_panel.sizeHint()
         self.control_panel.setFixedWidth(p_hint.width())
-        self.control_panel.setSizePolicy(QSizePolicy.Fixed, QSizePolicy.Expanding)
+        self.control_panel.setSizePolicy(QSizePolicy.Policy.Fixed, QSizePolicy.Policy.Expanding)
 
         # Core Layout: image (expanding) | control panel (fixed)
         self.core_layout.addWidget(self.image)
         self.core_layout.addWidget(self.control_panel)
 
+        self.tab_widget.addTab(self.alignment_tab, "Alignment")
+
+        self.fit_tab = QWidget(parent=self)
+        self.fit_layout = QVBoxLayout(self.fit_tab)
+        self.waveform_x = Waveform(parent=self.fit_tab)
+        self.waveform_y = Waveform(parent=self.fit_tab)
+
+        self.waveform_x.plot(
+            x=[0],
+            y=[1],
+            label="fit-x",
+            dap="SineModel",
+            dap_parameters={
+                "frequency": {"value": 0.0174533, "vary": False, "min": 0.01, "max": 0.02}
+            },
+            dap_oversample=5,
+        )
+        self.waveform_y.plot(x=[0], y=[2], label="fit-y", dap="SineModel")  # ,dap_oversample=5)
+        self.fit_x = self.waveform_x.curves[0]
+        self.fit_y = self.waveform_y.curves[0]
+
+        self.waveform_x.dap_params_update.connect(self.on_dap_params)
+        self.waveform_y.dap_params_update.connect(self.on_dap_params)
+
+        for wave in (self.waveform_x, self.waveform_y):
+            wave.x_label = "Angle (deg)"
+            wave.x_grid = True
+            wave.y_grid = True
+            wave.enable_toolbar = True
+
+        self.fit_layout.addWidget(self.waveform_x)
+        self.fit_layout.addWidget(self.waveform_y)
+        self.tab_widget.addTab(self.fit_tab, "Fit")
+
     def _make_connections(self):
         # Fetch initial state
         self.on_live_view_enabled(True)
@@ -230,31 +318,36 @@ class XRayEye(BECWidget, QWidget):
 
         # Make connections
         self.live_preview_toggle.enabled.connect(self.on_live_view_enabled)
-        self.step_size.valueChanged.connect(lambda x: self.motor_control_2d.setProperty("step_size", x))
+        self.step_size.valueChanged.connect(
+            lambda x: self.motor_control_2d.setProperty("step_size", x)
+        )
         self.submit_button.clicked.connect(self.submit)
 
     def _create_separator(self):
         sep = QFrame(parent=self)
-        sep.setFrameShape(QFrame.HLine)
-        sep.setFrameShadow(QFrame.Sunken)
+        sep.setFrameShape(QFrame.Shape.HLine)
+        sep.setFrameShadow(QFrame.Shadow.Sunken)
         sep.setLineWidth(1)
         return sep
 
     def _init_gui_trigger(self):
         self.dev.omny_xray_gui.read()
+        self.dev.omnyfsh.read()
 
     ################################################################################
     # Device Connection logic
     ################################################################################
 
     def connect_motors(self):
-        """ Checks one of the possible motors for flomni, omny and lamni setup."""
-        possible_motors = ['osamroy', 'lsamrot', 'fsamroy']
+        """Checks one of the possible motors for flomni, omny and lamni setup."""
+        possible_motors = ["osamroy", "lsamrot", "fsamroy"]
 
         for motor in possible_motors:
             if motor in self.dev:
-                self.bec_dispatcher.connect_slot(self.on_tomo_angle_readback, MessageEndpoints.device_readback(motor))
-                logger.info(f"Succesfully connected to {motor}")
+                self.bec_dispatcher.connect_slot(
+                    self.on_tomo_angle_readback, MessageEndpoints.device_readback(motor)
+                )
+                logger.info(f"Successfully connected to {motor}")
 
     ################################################################################
     # Properties ported from the original OmnyAlignment, can be adjusted as needed
@@ -291,6 +384,13 @@ class XRayEye(BECWidget, QWidget):
     # Slots ported from the original OmnyAlignment, can be adjusted as needed
     ################################################################################
 
+    @SafeSlot(str)
+    def switch_tab(self, tab: str):
+        if tab == "fit":
+            self.tab_widget.setCurrentIndex(1)
+        else:
+            self.tab_widget.setCurrentIndex(0)
+
     @SafeSlot()
     def get_roi_coordinates(self) -> dict | None:
         """Get the coordinates of the currently active ROI."""
@@ -307,14 +407,48 @@ class XRayEye(BECWidget, QWidget):
         self.live_preview_toggle.blockSignals(True)
         if enabled:
             self.live_preview_toggle.checked = enabled
-            self.image.image(CAMERA)
+            self.image.image(device=CAMERA[0], signal=CAMERA[1])
             self.live_preview_toggle.blockSignals(False)
             return
 
-        self.image.disconnect_monitor(CAMERA)
+        self.image.disconnect_monitor(CAMERA[0], CAMERA[1])
         self.live_preview_toggle.checked = enabled
         self.live_preview_toggle.blockSignals(False)
 
+    @SafeSlot(bool)
+    def camera_running_enabled(self, enabled: bool):
+        logger.info(f"Camera running: {enabled}")
+        self.camera_running_toggle.blockSignals(True)
+        self.dev.get(CAMERA[0]).live_mode_enabled.put(enabled)
+        self.camera_running_toggle.checked = enabled
+        self.camera_running_toggle.blockSignals(False)
+
+    @SafeSlot(dict, dict)
+    def getting_camera_status(self, data, meta):
+        print(f"msg:{data}")
+        live_mode_enabled = data.get("signals").get(f"{CAMERA[0]}_live_mode_enabled").get("value")
+        self.camera_running_toggle.blockSignals(True)
+        self.camera_running_toggle.checked = live_mode_enabled
+        self.camera_running_toggle.blockSignals(False)
+
+    @SafeSlot(bool)
+    def opening_shutter(self, enabled: bool):
+        logger.info(f"Shutter changed from GUI to: {enabled}")
+        self.shutter_toggle.blockSignals(True)
+        if enabled:
+            self.dev.omnyfsh.fshopen()
+        else:
+            self.dev.omnyfsh.fshclose()
+        # self.shutter_toggle.checked = enabled
+        self.shutter_toggle.blockSignals(False)
+
+    @SafeSlot(dict, dict)
+    def getting_shutter_status(self, data, meta):
+        shutter_open = bool(data.get("signals").get("omnyfsh_shutter").get("value"))
+        self.shutter_toggle.blockSignals(True)
+        self.shutter_toggle.checked = shutter_open
+        self.shutter_toggle.blockSignals(False)
+
     @SafeSlot(bool, bool)
     def on_motors_enable(self, x_enable: bool, y_enable: bool):
         """
@@ -327,98 +461,108 @@ class XRayEye(BECWidget, QWidget):
         self.motor_control_2d.enable_controls_hor(x_enable)
         self.motor_control_2d.enable_controls_ver(y_enable)
 
-    @SafeSlot(int)
-    def enable_submit_button(self, enable: int):
+    @SafeSlot(bool)
+    def enable_submit_button(self, enable: bool):
         """
         Enable/disable submit button.
         Args:
             enable(int): -1 disable else enable
         """
-        if enable == -1:
-            self.submit_button.setEnabled(False)
-        else:
+        if enable:
             self.submit_button.setEnabled(True)
+        else:
+            self.submit_button.setEnabled(False)
+
+    @SafeSlot(dict, dict)
+    def on_dap_params(self, data, meta):
+        print("#######################################")
+        print("getting dap parameters")
+        print(f"data: {data}")
+        print(f"meta: {meta}")
+        self.waveform_x.auto_range(True)
+        self.waveform_y.auto_range(True)
+        # self.bec_dispatcher.disconnect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
+        curve_id = meta.get("curve_id")
+
+        if curve_id == "fit-x-SineModel":
+            self.dev.omny_xray_gui.fit_params_x.set(data).wait()
+            print(f"setting x data to {data}")
+        else:
+            self.dev.omny_xray_gui.fit_params_y.set(data).wait()
+            print(f"setting y data to {data}")
+        # self.bec_dispatcher.connect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
 
     @SafeSlot(bool, bool)
     def on_tomo_angle_readback(self, data: dict, meta: dict):
-        #TODO implement if needed
+        # TODO implement if needed
         print(f"data: {data}")
         print(f"meta: {meta}")
 
-    @SafeSlot(dict, dict)
-    def device_updates(self, data: dict, meta: dict):
-        """
-        Slot to handle device updates from omny_xray_gui device.
-
-        Args:
-            data(dict):  data from device
-            meta(dict): metadata from device
-        """
-
-        signals = data.get('signals')
-        enable_live_preview = signals.get("omny_xray_gui_update_frame_acq").get('value')
-        enable_x_motor = signals.get("omny_xray_gui_enable_mv_x").get('value')
-        enable_y_motor = signals.get("omny_xray_gui_enable_mv_y").get('value')
-        self.on_live_view_enabled(bool(enable_live_preview))
-        self.on_motors_enable(bool(enable_x_motor), bool(enable_y_motor))
-
-        # Signals from epics gui device
-        # send message
-        user_message = signals.get("omny_xray_gui_send_message").get('value')
-        self.user_message = user_message
-        # sample name
-        sample_message = signals.get("omny_xray_gui_sample_name").get('value')
-        self.sample_name = sample_message
-        # enable frame acquisition
-        update_frame_acq = signals.get("omny_xray_gui_update_frame_acq").get('value')
-        self.on_live_view_enabled(bool(update_frame_acq))
-        # enable submit button
-        enable_submit_button = signals.get("omny_xray_gui_submit").get('value')
-        self.enable_submit_button(enable_submit_button)
+    @SafeSlot()
+    def submit_fit_array(self, fit_array):
+        self.tab_widget.setCurrentIndex(1)
+        # self.fix_x.title = " got fit array"
+        print(f"got fit array {fit_array}")
+        self.waveform_x.curves[0].set_data(x=fit_array[0], y=fit_array[1])
+        # self.fit_x.set_data(x=fit_array[0],y=fit_array[1])
+        # self.fit_y.set_data(x=fit_array[0],y=fit_array[2])
 
     @SafeSlot()
     def submit(self):
         """Execute submit action by submit button."""
+        print("submit pushed")
+        self.submit_button.blockSignals(True)
         if self.roi_manager.single_active_roi is None:
             logger.warning("No active ROI")
             return
         roi_coordinates = self.roi_manager.single_active_roi.get_coordinates()
-        roi_center_x = roi_coordinates['center_x']
-        roi_center_y = roi_coordinates['center_y']
+        roi_center_x = roi_coordinates["center_x"]
+        roi_center_y = roi_coordinates["center_y"]
         # Case of rectangular ROI
         if isinstance(self.roi_manager.single_active_roi, RectangularROI):
-            roi_width = roi_coordinates['width']
-            roi_height = roi_coordinates['height']
+            roi_width = roi_coordinates["width"]
+            roi_height = roi_coordinates["height"]
         elif isinstance(self.roi_manager.single_active_roi, CircularROI):
-            roi_width = roi_coordinates['diameter']
-            roi_height = roi_coordinates['radius']
+            roi_width = roi_coordinates["diameter"]
+            roi_height = roi_coordinates["radius"]
         else:
             logger.warning("Unsupported ROI type for submit action.")
             return
 
-        print(f"current roi: x:{roi_center_x}, y:{roi_center_y}, w:{roi_width},h:{roi_height}") #TODO remove when will be not needed for debugging
+        print(
+            f"current roi: x:{roi_center_x}, y:{roi_center_y}, w:{roi_width},h:{roi_height}"
+        )  # TODO remove when will be not needed for debugging
         # submit roi coordinates
-        step = int(self.dev.omny_xray_gui.step.read().get("omny_xray_gui_step").get('value'))
+        step = int(self.dev.omny_xray_gui.step.read().get("omny_xray_gui_step").get("value"))
 
-        xval_x = getattr(self.dev.omny_xray_gui.xval_x, f"xval_x_{step}").set(roi_center_x)
-        xval_y = getattr(self.dev.omny_xray_gui.yval_y, f"yval_y_{step}").set(roi_center_y)
-        width_x = getattr(self.dev.omny_xray_gui.width_x, f"width_x_{step}").set(roi_width)
-        width_y = getattr(self.dev.omny_xray_gui.width_y, f"width_y_{step}").set(roi_height)
+        xval_x = getattr(self.dev.omny_xray_gui, f"xval_x_{step}").set(roi_center_x)
+        xval_y = getattr(self.dev.omny_xray_gui, f"yval_y_{step}").set(roi_center_y)
+        width_x = getattr(self.dev.omny_xray_gui, f"width_x_{step}").set(roi_width)
+        width_y = getattr(self.dev.omny_xray_gui, f"width_y_{step}").set(roi_height)
         self.dev.omny_xray_gui.submit.set(1)
-    
+        print("submit done")
+        self.submit_button.blockSignals(False)
+
+
     def cleanup(self):
         """Cleanup connections on widget close -> disconnect slots and stop live mode of camera."""
-        self.bec_dispatcher.disconnect_slot(self.device_updates, MessageEndpoints.device_readback("omny_xray_gui"))
-        getattr(self.dev,CAMERA[0]).live_mode = False
+        self.bec_dispatcher.disconnect_slot(
+            self.device_updates, MessageEndpoints.device_readback("omny_xray_gui")
+        )
+        getattr(self.dev, CAMERA[0]).live_mode = False
         super().cleanup()
 
+
 if __name__ == "__main__":
     import sys
 
     from qtpy.QtWidgets import QApplication
+    from bec_widgets.utils import BECDispatcher
+    from bec_widgets.utils.colors import apply_theme
 
     app = QApplication(sys.argv)
-
+    apply_theme("light")
+    dispatcher = BECDispatcher(gui_id="xray")
     win = XRayEye()
 
     win.resize(1000, 800)

csaxs_bec/device_configs/bl_detectors.yaml

@@ -9,27 +9,27 @@ eiger_1_5:
   readoutPriority: async
   softwareTrigger: False
 
-eiger_9:
-  description: Eiger 9M detector 
-  deviceClass: csaxs_bec.devices.jungfraujoch.eiger_9m.Eiger9M
-  deviceConfig:
-    detector_distance: 100
-    beam_center: [0, 0]
-  onFailure: raise
-  enabled: true
-  readoutPriority: async
-  softwareTrigger: False
+# eiger_9:
+#   description: Eiger 9M detector 
+#   deviceClass: csaxs_bec.devices.jungfraujoch.eiger_9m.Eiger9M
+#   deviceConfig:
+#     detector_distance: 100
+#     beam_center: [0, 0]
+#   onFailure: raise
+#   enabled: true
+#   readoutPriority: async
+#   softwareTrigger: False
 
-ids_cam:
-  description: IDS camera for live image acquisition
-  deviceClass: csaxs_bec.devices.ids_cameras.IDSCamera
-  deviceConfig:
-    camera_id: 201
-    bits_per_pixel: 24
-    m_n_colormode: 1
-    live_mode: True
-  onFailure: raise
-  enabled: true
-  readoutPriority: async
-  softwareTrigger: True
+# ids_cam:
+#   description: IDS camera for live image acquisition
+#   deviceClass: csaxs_bec.devices.ids_cameras.IDSCamera
+#   deviceConfig:
+#     camera_id: 201
+#     bits_per_pixel: 24
+#     m_n_colormode: 1
+#     live_mode: True
+#   onFailure: raise
+#   enabled: true
+#   readoutPriority: async
+#   softwareTrigger: True
 

csaxs_bec/device_configs/bl_general.yaml

@@ -0,0 +1,25 @@
+############################################################
+##################### EPS ##################################
+############################################################
+x12saEPS:
+  description: X12SA EPS info and control
+  deviceClass: csaxs_bec.devices.epics.eps.EPS
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+############################################################
+##################### GalilRIO #############################
+############################################################
+
+galilrioesxbox:
+  description: Galil RIO for remote gain switching and slow reading ES XBox
+  deviceClass: csaxs_bec.devices.omny.galil.galil_rio.GalilRIO
+  deviceConfig:
+    host: galilrioesxbox.psi.ch
+  enabled: true
+  onFailure: raise
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20

csaxs_bec/device_configs/main.yaml

@@ -1,11 +1,11 @@
 # This is the main configuration file that is
 # commented or uncommented according to the type of experiment
 
-optics:
-  - !include ./bl_optics_hutch.yaml
+# optics:
+#   - !include ./bl_optics_hutch.yaml
 
-frontend:
-  - !include ./bl_frontend.yaml
+# frontend:
+#   - !include ./bl_frontend.yaml
 
 endstation:
   - !include ./bl_endstation.yaml
@@ -16,8 +16,8 @@ detectors:
 #sastt:
 #  - !include ./sastt.yaml
 
-#flomni:
-#  - !include ./ptycho_flomni.yaml
+flomni:
+ - !include ./ptycho_flomni.yaml
 
 #omny:
 #  - !include ./ptycho_omny.yaml

csaxs_bec/device_configs/ptycho_floimni_sim.yaml

@@ -0,0 +1,480 @@
+############################################################
+#################### flOMNI Galil motors ###################
+############################################################
+
+feyex:
+  description: Xray eye X
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: D
+    host: mpc2844.psi.ch
+    limits:
+    - -30
+    - -1
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: -16.267
+    out: -1
+feyey:
+  description: Xray eye Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: E
+    host: mpc2844.psi.ch
+    limits:
+    - -1
+    - -10
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: -10.467
+fheater:
+  description: Heater Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: C
+    host: mpc2844.psi.ch
+    limits:
+    - -15
+    - 0
+    port: 8082
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+foptx:
+  description: Optics X
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: B
+    host: mpc2844.psi.ch
+    limits:
+    - -17
+    - -12
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: -13.761
+fopty:
+  description: Optics Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: F
+    host: mpc2844.psi.ch
+    limits:
+    - 0
+    - 4
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: 0.552
+    out: 0.752
+foptz:
+  description: Optics Z
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    limits:
+    - 0
+    - 27
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: 23
+fsamroy:
+  description: Sample rotation
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    limits:
+    - -5
+    - 365
+    port: 8084
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+fsamx:
+  description: Sample coarse X
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: E
+    host: mpc2844.psi.ch
+    limits:
+    - -162
+    - 0
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: -1.1
+fsamy:
+  description: Sample coarse Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: F
+    host: mpc2844.psi.ch
+    limits:
+    - 2
+    - 3.1
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: 2.75
+ftracky:
+  description: Laser Tracker coarse Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: H
+    host: mpc2844.psi.ch
+    limits:
+    - 2.2
+    - 2.8
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+ftrackz:
+  description: Laser Tracker coarse Z
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: G
+    host: mpc2844.psi.ch
+    limits:
+    - 4.5
+    - 5.5
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+ftransx:
+  description: Sample transer X
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: C
+    host: mpc2844.psi.ch
+    limits:
+    - 0
+    - 50
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+ftransy:
+  description: Sample transer Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    limits:
+    - -100
+    - 0
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    sensor_voltage: -2.4
+ftransz:
+  description: Sample transer Z
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: B
+    host: mpc2844.psi.ch
+    limits:
+    - 0
+    - 145
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+ftray:
+  description: Sample transfer tray
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: D
+    host: mpc2844.psi.ch
+    limits:
+    - -200
+    - 0
+    port: 8081
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+
+
+############################################################
+#################### flOMNI Sample Names ###################
+############################################################
+
+flomni_samples:
+  description: Sample names and storage
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimSampleStorage
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+
+############################################################
+#################### flOMNI Smaract motors #################
+############################################################
+
+fosax:
+  description: OSA X
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    limits:
+    - 10.2
+    - 10.6
+    port: 3334
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: 9.124
+    out: 5.3
+fosay:
+  description: OSA Y
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: B
+    host: mpc2844.psi.ch
+    limits:
+    - -3.1
+    - -2.9
+    port: 3334
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: 0.367
+fosaz:
+  description: OSA Z
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: C
+    host: mpc2844.psi.ch
+    limits:
+    - -6
+    - -4
+    port: 3334
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  connectionTimeout: 20
+  userParameter:
+    in: 8.5
+    out: 6
+
+############################################################
+#################### flOMNI RT motors ######################
+############################################################
+  
+rtx:
+  description: flomni rt
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    port: 2222
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request
+  connectionTimeout: 20
+  userParameter:
+    low_signal: 10000
+    min_signal: 9000
+    rt_pid_voltage: -0.06219
+rty:
+  description: flomni rt
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: B
+    host: mpc2844.psi.ch
+    port: 2222
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request
+  connectionTimeout: 20
+  userParameter:
+    tomo_additional_offsety: 0
+rtz:
+  description: flomni rt
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimPositioner
+  deviceConfig:
+    axis_Id: C
+    host: mpc2844.psi.ch
+    port: 2222
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request
+  connectionTimeout: 20
+
+############################################################
+####################### Cameras ############################
+############################################################
+
+cam_flomni_gripper:
+  description: Camera sample changer
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimCamera
+  deviceConfig:
+    url: http://flomnicamserver:5000/video_high
+    num_rotation_90: 3
+    transpose: false
+  enabled: true 
+  onFailure: buffer 
+  readOnly: false 
+  readoutPriority: on_request
+
+cam_flomni_overview:
+  description: Camera flomni overview
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimCamera
+  deviceConfig:
+    url: http://flomnicamserver:5001/video_high
+    num_rotation_90: 3
+    transpose: false
+  enabled: true 
+  onFailure: buffer 
+  readOnly: false 
+  readoutPriority: on_request
+
+cam_xeye:
+  description: Camera flOMNI Xray eye ID1
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimCamera
+  deviceConfig:
+    camera_id: 1
+    bits_per_pixel: 24
+    num_rotation_90: 3
+    transpose: false
+    force_monochrome: true
+    m_n_colormode: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: async
+
+# cam_ids_rgb:
+#   description: Camera flOMNI Xray eye ID203
+#   deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimCamera
+#   deviceConfig:
+#     camera_id: 203
+#     bits_per_pixel: 24
+#     num_rotation_90: 2
+#     transpose: false
+#     force_monochrome: false
+#     m_n_colormode: 1
+#   enabled: true
+#   onFailure: buffer
+#   readOnly: false
+#   readoutPriority: async
+
+
+# ############################################################
+# ################### flOMNI temperatures ####################
+# ############################################################
+flomni_temphum:
+  description: flOMNI Temperatures and humidity
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimTempHum
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+# ############################################################
+# ########## OMNY / flOMNI / LamNI fast shutter ##############
+# ############################################################
+omnyfsh:
+  description: omnyfsh connects to  fast shutter at X12 if device fsh exists
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimFastShutter
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+############################################################
+#################### GUI Signals ###########################
+############################################################
+omny_xray_gui:
+  description: Gui signals
+  deviceClass: csaxs_bec.devices.sim.flomni_sim.FlomniSimXRayAlignGUI
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request

csaxs_bec/device_configs/ptycho_flomni.yaml

@@ -435,9 +435,9 @@ cam_xeye:
 #   deviceConfig:
 #     camera_id: 203
 #     bits_per_pixel: 24
-#     num_rotation_90: 3
+#     num_rotation_90: 2
 #     transpose: false
-#     force_monochrome: true
+#     force_monochrome: false
 #     m_n_colormode: 1
 #   enabled: true
 #   onFailure: buffer
@@ -471,8 +471,8 @@ omnyfsh:
 #################### GUI Signals ###########################
 ############################################################
 omny_xray_gui:
-  description: Gui Epics signals
-  deviceClass: csaxs_bec.devices.omny.xray_epics_gui.OMNYXRayEpicsGUI
+  description: Gui signals
+  deviceClass: csaxs_bec.devices.omny.xray_epics_gui.OMNYXRayAlignGUI
   deviceConfig: {}
   enabled: true
   onFailure: buffer
@@ -486,4 +486,25 @@ calculated_signal:
     compute_method: "def just_rand():\n return 42"
   enabled: true
   readOnly: false
-  readoutPriority: baseline
+  readoutPriority: baseline
+
+############################################################
+#################### OMNY Pandabox #########################
+############################################################
+omny_panda:
+  readoutPriority: async
+  deviceClass: csaxs_bec.devices.panda_box.panda_box_omny.PandaBoxOMNY
+  deviceConfig:
+    host: omny-panda.psi.ch
+    signal_alias:
+      FMC_IN.VAL1.Min: cap_voltage_fzp_y_min
+      FMC_IN.VAL1.Max: cap_voltage_fzp_y_max
+      FMC_IN.VAL1.Mean: cap_voltage_fzp_y_mean
+      FMC_IN.VAL2.Min: cap_voltage_fzp_x_min
+      FMC_IN.VAL2.Max: cap_voltage_fzp_x_max
+      FMC_IN.VAL2.Mean: cap_voltage_fzp_x_mean
+  deviceTags:
+    - detector
+  enabled: true
+  readOnly: false
+  softwareTrigger: false

csaxs_bec/devices/epics/allied_vision_camera.py

@@ -0,0 +1,149 @@
+"""Module for the EPICS integration of the AlliedVision Camera via Vimba SDK."""
+
+import threading
+import traceback
+from enum import IntEnum
+
+import numpy as np
+from bec_lib.logger import bec_logger
+from ophyd import Component as Cpt, Kind, Signal
+from ophyd.areadetector import ADComponent as ADCpt
+from ophyd.areadetector import DetectorBase
+from ophyd_devices import PreviewSignal
+from ophyd_devices.devices.areadetector.cam import VimbaDetectorCam
+from ophyd_devices.devices.areadetector.plugins import ImagePlugin_V35 as ImagePlugin
+from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
+from typeguard import typechecked
+
+logger = bec_logger.logger
+
+
+class ACQUIRE_MODES(IntEnum):
+    """Acquiring enums for Allied Vision Camera"""
+
+    ACQUIRING = 1
+    DONE = 0
+
+
+class AlliedVisionCamera(PSIDeviceBase, DetectorBase):
+    """
+    Epics Area Detector interface for the Allied Vision Alvium G1-507m camera via Vimba SDK.
+    The IOC runs with under the prefix: 'X12SA-GIGECAM-AV1:'.
+    """
+
+    USER_ACCESS = ["start_live_mode", "stop_live_mode"]
+
+    cam = ADCpt(VimbaDetectorCam, "cam1:")
+    image = ADCpt(ImagePlugin, "image1:")
+
+    preview = Cpt(
+        PreviewSignal,
+        name="preview",
+        ndim=2,
+        num_rotation_90=0,
+        doc="Preview signal of the AlliedVision camera.",
+    )
+
+    live_mode_enabled = Cpt(
+        Signal,
+        name="live_mode_enabled",
+        value=False,
+        doc="Enable or disable live mode.",
+        kind=Kind.config,
+    )
+
+    def __init__(
+        self,
+        *,
+        name: str,
+        prefix: str,
+        poll_rate: int = 5,
+        scan_info=None,
+        device_manager=None,
+        **kwargs,
+    ):
+        super().__init__(
+            name=name, prefix=prefix, scan_info=scan_info, device_manager=device_manager, **kwargs
+        )
+        self._poll_thread = threading.Thread(
+            target=self._poll_array_data, daemon=True, name=f"{self.name}_poll_thread"
+        )
+        self._poll_thread_kill_event = threading.Event()
+        self._poll_start_event = threading.Event()
+        if poll_rate > 10:
+            logger.warning(f"Poll rate too high for Camera {self.name}, setting to 10 Hz max.")
+            poll_rate = 10
+        self._poll_rate = poll_rate
+        self._unique_array_id = 0
+        self._pv_timeout = 2.0
+        self.image: ImagePlugin
+        self._live_mode_lock = threading.RLock()
+        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
+
+    def start_live_mode(self) -> None:
+        """Start live mode."""
+        self.live_mode_enabled.put(True)
+
+    def stop_live_mode(self) -> None:
+        """Stop live mode."""
+        self.live_mode_enabled.put(False)
+
+    def _on_live_mode_enabled_changed(self, *args, value, **kwargs) -> None:
+        self._apply_live_mode(bool(value))
+
+    def _apply_live_mode(self, enabled: bool) -> None:
+        with self._live_mode_lock:
+            if enabled:
+                if not self._poll_start_event.is_set():
+                    self._poll_start_event.set()
+                    self.cam.acquire.put(ACQUIRE_MODES.ACQUIRING.value)  # Start acquisition
+                else:
+                    logger.info(f"Live mode already started for {self.name}.")
+                return
+
+            if self._poll_start_event.is_set():
+                self._poll_start_event.clear()
+                self.cam.acquire.put(ACQUIRE_MODES.DONE.value)  # Stop acquisition
+            else:
+                logger.info(f"Live mode already stopped for {self.name}.")
+
+    def on_connected(self):
+        """Reset the unique array ID on connection."""
+        self.cam.array_counter.set(0).wait(timeout=self._pv_timeout)
+        self.cam.array_callbacks.set(1).wait(timeout=self._pv_timeout)
+        self._poll_thread.start()
+
+    def _poll_array_data(self):
+        """Poll the array data for preview updates."""
+        while not self._poll_thread_kill_event.wait(1 / self._poll_rate):
+            while self._poll_start_event.wait():
+                try:
+                    # First check if there is a new image
+                    if self.image.unique_id.get() != self._unique_array_id:
+                        self._unique_array_id = self.image.unique_id.get()
+                    else:
+                        continue  # No new image, skip update
+                    # Get new image data
+                    value = self.image.array_data.get()
+                    if value is None:
+                        logger.info(f"No image data available for preview of {self.name}")
+                        continue
+
+                    array_size = self.image.array_size.get()
+                    if array_size[0] == 0:  # 2D image, not color image
+                        array_size = array_size[1:]
+                    # Geometry correction for the image
+                    data = np.reshape(value, array_size)
+                    self.preview.put(data)
+                except Exception:  # pylint: disable=broad-except
+                    content = traceback.format_exc()
+                    logger.error(
+                        f"Error while polling array data for preview of {self.name}: {content}"
+                    )
+
+    def on_destroy(self):
+        """Stop the polling thread on destruction."""
+        self._poll_thread_kill_event.set()
+        self._poll_start_event.set()
+        if self._poll_thread.is_alive():
+            self._poll_thread.join(timeout=2)

csaxs_bec/devices/epics/delay_generator_csaxs/ddg_1.py

@@ -309,7 +309,11 @@ class DDG1(PSIDeviceBase, DelayGeneratorCSAXS):
         # Shutter opens without delay at t0, closes after exp_time * burst_count + 2ms (self._shutter_to_open_delay)
         self.set_delay_pairs(channel="cd", delay=0, width=shutter_width)
 
-        self.set_delay_pairs(channel="gh", delay=self._shutter_to_open_delay, width=(shutter_width-self._shutter_to_open_delay))
+        self.set_delay_pairs(
+            channel="gh",
+            delay=self._shutter_to_open_delay,
+            width=(shutter_width - self._shutter_to_open_delay),
+        )
 
         # Trigger extra pulse for MCS OR gate
         # f = e + 1us
@@ -520,7 +524,6 @@ class DDG1(PSIDeviceBase, DelayGeneratorCSAXS):
         - Return the status object to BEC which will automatically resolve once the status register has
             the END_OF_BURST bit set. The callback of the status object will also stop the polling loop.
         """
-        overall_start = time.time()
         self._stop_polling()
 
         # NOTE If the trigger source is not SINGLE_SHOT, the DDG is triggered by an external source
@@ -559,7 +562,6 @@ class DDG1(PSIDeviceBase, DelayGeneratorCSAXS):
         # Send trigger
         self.trigger_shot.put(1, use_complete=True)
         self.cancel_on_stop(status)
-        logger.info(f"Configured ddg in {time.time()-overall_start}")
         return status
 
     def on_stop(self) -> None:

csaxs_bec/devices/epics/mcs_card/mcs_card_csaxs.py

@@ -261,7 +261,6 @@ class MCSCardCSAXS(PSIDeviceBase, MCSCard):
             **kwargs: Additional keyword arguments from the subscription, including 'obj' (the EpicsSignalRO instance).
         """
         with self._rlock:
-            logger.info(f"Received update on mcs card {self.name}")
             if self._omit_mca_callbacks.is_set():
                 return  # Suppress callbacks when erasing all channels
             self._mca_counter_index += 1
@@ -293,9 +292,6 @@ class MCSCardCSAXS(PSIDeviceBase, MCSCard):
             )
 
             # Once we have received all channels, push data to BEC and reset for next accumulation
-            logger.info(
-                f"Received update for {attr_name}, index {self._mca_counter_index}/{self.NUM_MCA_CHANNELS}"
-            )
             if len(self._current_data) == self.NUM_MCA_CHANNELS:
                 logger.debug(
                     f"Current data index {self._current_data_index} complete, pushing to BEC."
@@ -398,11 +394,12 @@ class MCSCardCSAXS(PSIDeviceBase, MCSCard):
         # NOTE Make sure that the signal that omits mca callbacks is cleared
         self._omit_mca_callbacks.clear()
 
-        logger.info(f"MCS Card {self.name} on_stage completed in {time.time() - start_time:.3f}s.")
         # For a fly scan we need to start the mcs card ourselves
         if self.scan_info.msg.scan_type == "fly":
             self.erase_start.put(1)
 
+        logger.info(f"MCS Card {self.name} on_stage completed in {time.time() - start_time:.3f}s.")
+
     def on_prescan(self) -> None | StatusBase:
         """
         This method is called after on_stage and before the scan starts. For the MCS card, we need to make sure

csaxs_bec/devices/ids_cameras/base_integration/camera.py

@@ -156,7 +156,6 @@ class Camera:
         camera_id (int): The ID of the camera device.
         m_n_colormode (Literal[0, 1, 2, 3]): Color mode for the camera.
         bits_per_pixel (Literal[8, 24]): Number of bits per pixel for the camera.
-        live_mode (bool): Whether to enable live mode for the camera.
     """
 
     def __init__(

csaxs_bec/devices/ids_cameras/ids_camera.py

@@ -3,21 +3,19 @@
 from __future__ import annotations
 
 import threading
-import time
-from typing import TYPE_CHECKING, Literal, Tuple, TypedDict
+from typing import TYPE_CHECKING, Literal
 
 import numpy as np
+from ophyd import Component as Cpt, Signal, Kind
+
 from bec_lib import messages
 from bec_lib.logger import bec_logger
-from ophyd import Component as Cpt
+from csaxs_bec.devices.ids_cameras.base_integration.camera import Camera
 from ophyd_devices.interfaces.base_classes.psi_device_base import PSIDeviceBase
 from ophyd_devices.utils.bec_signals import AsyncSignal, PreviewSignal
 
-from csaxs_bec.devices.ids_cameras.base_integration.camera import Camera
-
 if TYPE_CHECKING:
     from bec_lib.devicemanager import ScanInfo
-    from pydantic import ValidationInfo
 
 logger = bec_logger.logger
 
@@ -45,8 +43,15 @@ class IDSCamera(PSIDeviceBase):
         doc="Signal for the region of interest (ROI).",
         async_update={"type": "add", "max_shape": [None]},
     )
+    live_mode_enabled = Cpt(
+        Signal,
+        name="live_mode_enabled",
+        value=False,
+        doc="Enable or disable live mode.",
+        kind=Kind.config,
+    )
 
-    USER_ACCESS = ["live_mode", "mask", "set_rect_roi", "get_last_image"]
+    USER_ACCESS = ["start_live_mode", "stop_live_mode", "mask", "set_rect_roi", "get_last_image"]
 
     def __init__(
         self,
@@ -83,15 +88,22 @@ class IDSCamera(PSIDeviceBase):
             bits_per_pixel=bits_per_pixel,
             connect=False,
         )
-        self._live_mode = False
         self._inputs = {"live_mode": live_mode}
         self._mask = np.zeros((1, 1), dtype=np.uint8)
         self.image.num_rotation_90 = num_rotation_90
         self.image.transpose = transpose
         self._force_monochrome = force_monochrome
+        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
+        self.live_mode_enabled.put(bool(live_mode))
 
     ############## Live Mode Methods ##############
 
+    def start_live_mode(self) -> None:
+        self.live_mode_enabled.put(True)
+
+    def stop_live_mode(self) -> None:
+        self.live_mode_enabled.put(False)
+
     @property
     def mask(self) -> np.ndarray:
         """Return the current region of interest (ROI) for the camera."""
@@ -114,22 +126,15 @@ class IDSCamera(PSIDeviceBase):
             )
         self._mask = value
 
-    @property
-    def live_mode(self) -> bool:
-        """Return whether the camera is in live mode."""
-        return self._live_mode
-
-    @live_mode.setter
-    def live_mode(self, value: bool):
-        """Set the live mode for the camera."""
-        if value != self._live_mode:
-            if self.cam._connected is False:  # $ pylint: disable=protected-access
-                self.cam.on_connect()
-            self._live_mode = value
-            if value:
-                self._start_live()
-            else:
-                self._stop_live()
+    def _on_live_mode_enabled_changed(self, *args, value, **kwargs):
+        """Callback for when live mode is changed."""
+        enabled = bool(value)
+        if enabled and self.cam._connected is False:  # pylint: disable=protected-access
+            self.cam.on_connect()
+        if enabled:
+            self._start_live()
+        else:
+            self._stop_live()
 
     def set_rect_roi(self, x: int, y: int, width: int, height: int):
         """Set the rectangular region of interest (ROI) for the camera."""
@@ -196,7 +201,7 @@ class IDSCamera(PSIDeviceBase):
         """Connect to the camera."""
         self.cam.force_monochrome = self._force_monochrome
         self.cam.on_connect()
-        self.live_mode = self._inputs.get("live_mode", False)
+        self.live_mode_enabled.put(bool(self._inputs.get("live_mode", False)))
         self.set_rect_roi(0, 0, self.cam.cam.width.value, self.cam.cam.height.value)
 
     def on_destroy(self):
@@ -206,7 +211,7 @@ class IDSCamera(PSIDeviceBase):
 
     def on_trigger(self):
         """Handle the trigger event."""
-        if not self.live_mode:
+        if not bool(self.live_mode_enabled.get()):
             return
         image = self.image.get()
         if image is not None:

csaxs_bec/devices/jungfraujoch/eiger.py

@@ -132,7 +132,6 @@ class Eiger(PSIDeviceBase):
             if data is None:
                 logger.error(f"Received image message on device {self.name} without data.")
                 return
-            logger.info(f"Received preview image on device {self.name}")
             self.preview_image.put(data)
 
     # pylint: disable=missing-function-docstring

csaxs_bec/devices/omny/galil/galil_rio.py

@@ -13,6 +13,7 @@ which can be easily supported by changing the _NUM_DIGITAL_OUTPUT_CHANNELS varia
 
 from __future__ import annotations
 
+import time
 from typing import TYPE_CHECKING, Literal
 
 from bec_lib.logger import bec_logger
@@ -78,12 +79,38 @@ class GalilRIOAnalogSignalRO(GalilSignalBase):
     """
 
     _NUM_ANALOG_CHANNELS = 8
+    READBACK_TIMEOUT = 0.1  # time to wait in between two readback attemps in seconds, otherwise return cached value
 
-    def __init__(self, signal_name: str, channel: int, parent: GalilRIO, **kwargs):
+    def __init__(
+        self,
+        signal_name: str,
+        channel: int,
+        parent: GalilRIO,
+        readback_timeout: float = None,
+        **kwargs,
+    ):
         super().__init__(signal_name=signal_name, parent=parent, **kwargs)
         self._channel = channel
         self._metadata["connected"] = False
+        self._readback_timeout = (
+            readback_timeout if readback_timeout is not None else self.READBACK_TIMEOUT
+        )
         self._metadata["write_access"] = False
+        self._last_readback = 0.0
+
+    def get(self):
+        current_time = time.monotonic()
+        if current_time - self._last_readback > self._readback_timeout:
+            old_value = self._readback
+            self._last_readback = current_time  # _socket_get may rely on this value to be set.
+            self._readback = self._socket_get()
+            self._run_subs(
+                sub_type=self.SUB_VALUE,
+                old_value=old_value,
+                value=self._readback,
+                timestamp=current_time,
+            )
+        return self._readback
 
     def _socket_set(self, val):
         """Read-only signal, so set method raises an error."""
@@ -136,6 +163,8 @@ class GalilRIOAnalogSignalRO(GalilSignalBase):
 
         # Run subscriptions after all readbacks have been updated
         # on all channels except the one that triggered the update
+        # TODO for now skip running subscribers, this should be re-implemented
+        # once we properly handle subscriptions from bec running "read"
         for walk in self.parent.walk_signals():
             if walk.item.attr_name in updates:
                 new_val, old_val = updates[walk.item.attr_name]
@@ -185,7 +214,7 @@ def _create_analog_channels(num_channels: int) -> dict[str, tuple]:
         an_channels[f"ch{i}"] = (
             GalilRIOAnalogSignalRO,
             f"ch{i}",
-            {"kind": Kind.normal, "notify_bec": True, "channel": i, "doc": f"Analog channel {i}."},
+            {"kind": Kind.normal, "channel": i, "doc": f"Analog channel {i}."},
         )
     return an_channels
 
@@ -202,12 +231,7 @@ def _create_digital_output_channels(num_channels: int) -> dict[str, tuple]:
         di_out_channels[f"ch{i}"] = (
             GalilRIODigitalOutSignal,
             f"ch{i}",
-            {
-                "kind": Kind.config,
-                "notify_bec": True,
-                "channel": i,
-                "doc": f"Digital output channel {i}.",
-            },
+            {"kind": Kind.config, "channel": i, "doc": f"Digital output channel {i}."},
         )
     return di_out_channels
 

csaxs_bec/devices/omny/rt/rt_lamni_ophyd.py

@@ -65,10 +65,8 @@ class RtLamniController(Controller):
         "_position_sampling_single_read",
         "_position_sampling_single_reset_and_start_sampling",
         "show_signal_strength_interferometer",
-        "show_interferometer_positions",
         "show_analog_signals",
         "show_feedback_status",
-
     ]
 
     def __init__(

csaxs_bec/devices/omny/webcam_viewer.py

@@ -2,7 +2,7 @@ import requests
 import threading
 import cv2
 import numpy as np
-from ophyd import Device, Component as Cpt
+from ophyd import Device, Component as Cpt, Kind, Signal
 from ophyd_devices import PreviewSignal
 import traceback 
 
@@ -13,6 +13,13 @@ logger = bec_logger.logger
 class WebcamViewer(Device):
     USER_ACCESS = ["start_live_mode", "stop_live_mode"]
     preview = Cpt(PreviewSignal, ndim=2, num_rotation_90=0, transpose=False)
+    live_mode_enabled = Cpt(
+        Signal,
+        name="live_mode_enabled",
+        value=False,
+        doc="Enable or disable live mode.",
+        kind=Kind.config,
+    )
 
     def __init__(self, url:str, name:str, num_rotation_90=0, transpose=False, **kwargs) -> None:
         super().__init__(name=name, **kwargs)
@@ -21,20 +28,54 @@ class WebcamViewer(Device):
         self._update_thread = None
         self._buffer = b""
         self._shutdown_event = threading.Event()
+        self._live_mode_lock = threading.RLock()
         self.preview.num_rotation_90 = num_rotation_90
         self.preview.transpose = transpose
+        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
 
     def start_live_mode(self) -> None:
-        if self._connection is not None:
-            return
-        self._update_thread = threading.Thread(target=self._update_loop, daemon=True)
-        self._update_thread.start()
+        self.live_mode_enabled.put(True)
+
+    def stop_live_mode(self) -> None:
+        self.live_mode_enabled.put(False)
+
+    def _on_live_mode_enabled_changed(self, *args, value, **kwargs) -> None:
+        self._apply_live_mode(bool(value))
+
+    def _apply_live_mode(self, enabled: bool) -> None:
+        with self._live_mode_lock:
+            if enabled:
+                if self._update_thread is not None and self._update_thread.is_alive():
+                    return
+                self._shutdown_event.clear()
+                self._update_thread = threading.Thread(target=self._update_loop, daemon=True)
+                self._update_thread.start()
+                return
+
+            if self._update_thread is None:
+                return
+            self._shutdown_event.set()
+            if self._connection is not None:
+                try:
+                    self._connection.close()
+                except Exception:  # pylint: disable=broad-except
+                    pass
+                self._connection = None
+            self._update_thread.join(timeout=2)
+            if self._update_thread.is_alive():
+                logger.warning("Webcam live mode thread did not stop within timeout.")
+                return
+            self._update_thread = None
+            self._buffer = b""
+            self._shutdown_event.clear()
 
     def _update_loop(self) -> None:
         while not self._shutdown_event.is_set():
             try:
-                self._connection = requests.get(self.url, stream=True)
+                self._connection = requests.get(self.url, stream=True, timeout=5)
                 for chunk in self._connection.iter_content(chunk_size=1024):
+                    if self._shutdown_event.is_set():
+                        break
                     self._buffer += chunk
                     start = self._buffer.find(b'\xff\xd8') # JPEG start
                     end = self._buffer.find(b'\xff\xd9') # JPEG end
@@ -50,16 +91,3 @@ class WebcamViewer(Device):
             except Exception as exc:
                 content = traceback.format_exc()
                 logger.error(f"Image update loop failed: {content}")
-
-    def stop_live_mode(self) -> None:
-        if self._connection is None:
-            return
-        self._shutdown_event.set()
-        if self._connection is not None:
-            self._connection.close()
-            self._connection = None
-        if self._update_thread is not None:
-            self._update_thread.join()
-            self._update_thread = None
-
-        self._shutdown_event.clear()

csaxs_bec/devices/omny/xray_epics_gui.py

@@ -1,74 +1,46 @@
-
-from ophyd import Component as Cpt
+import numpy as np
+from ophyd import Component as Cpt, Signal, EpicsSignal
 from ophyd import Device
 from ophyd import DynamicDeviceComponent as Dcpt
-from ophyd import EpicsSignal
 
+class OMNYXRayAlignGUI(Device):
 
-
-class OMNYXRayEpicsGUI(Device):
-
-    save_frame = Cpt(
-    EpicsSignal, name="save_frame", read_pv="XOMNYI-XEYE-SAVFRAME:0",auto_monitor=True
-    )
-    update_frame_acqdone = Cpt(
-    EpicsSignal, name="update_frame_acqdone", read_pv="XOMNYI-XEYE-ACQDONE:0",auto_monitor=True
-    )
-    update_frame_acq = Cpt(
-    EpicsSignal, name="update_frame_acq", read_pv="XOMNYI-XEYE-ACQ:0",auto_monitor=True
-    )
-    width_y_dynamic = {
-        f"width_y_{i}": (EpicsSignal, f"XOMNYI-XEYE-YWIDTH_Y:{i}", {"auto_monitor": True}) for i in range(0, 11)
-    }
-    width_y = Dcpt(width_y_dynamic)
-    width_x_dynamic = {
-        f"width_x_{i}": (EpicsSignal, f"XOMNYI-XEYE-XWIDTH_X:{i}", {"auto_monitor": True}) for i in range(0, 11)
-    }
-    width_x = Dcpt(width_x_dynamic)
-    enable_mv_x = Cpt(
-    EpicsSignal, name="enable_mv_x", read_pv="XOMNYI-XEYE-ENAMVX:0",auto_monitor=True
-    )
-    enable_mv_y = Cpt(
-    EpicsSignal, name="enable_mv_y", read_pv="XOMNYI-XEYE-ENAMVY:0",auto_monitor=True
-    )
-    send_message = Cpt(
-    EpicsSignal, name="send_message", read_pv="XOMNYI-XEYE-MESSAGE:0.DESC",auto_monitor=True
-    )
-    sample_name  = Cpt(
-    EpicsSignal, name="sample_name", read_pv="XOMNYI-XEYE-SAMPLENAME:0.DESC",auto_monitor=True
-    )
-    angle = Cpt(
-    EpicsSignal, name="angle", read_pv="XOMNYI-XEYE-ANGLE:0",auto_monitor=True
-    )
-    pixel_size = Cpt(
-    EpicsSignal, name="pixel_size", read_pv="XOMNYI-XEYE-PIXELSIZE:0",auto_monitor=True
-    )
+    update_frame_acqdone = Cpt(Signal, value=0)
+    update_frame_acq = Cpt(Signal, value=0)
+    enable_mv_x = Cpt(Signal, value=0)
+    enable_mv_y = Cpt(Signal, value=0)
+    send_message = Cpt(Signal, value=0)
+    sample_name  = Cpt(Signal, value=0)
+    angle = Cpt(Signal, value=0)
+    pixel_size = Cpt(Signal, value=0)
     submit = Cpt(
     EpicsSignal, name="submit", read_pv="XOMNYI-XEYE-SUBMIT:0",auto_monitor=True
-    )
-    step = Cpt(
-    EpicsSignal, name="step", read_pv="XOMNYI-XEYE-STEP:0",auto_monitor=True
-    )
-    xval_x_dynamic = {
-        f"xval_x_{i}": (EpicsSignal, f"XOMNYI-XEYE-XVAL_X:{i}", {"auto_monitor": True}) for i in range(0, 11)
-    }
-    xval_x = Dcpt(xval_x_dynamic)
-    yval_y_dynamic = {
-        f"yval_y_{i}": (EpicsSignal, f"XOMNYI-XEYE-YVAL_Y:{i}", {"auto_monitor": True}) for i in range(0, 11)
-    }
-    yval_y = Dcpt(yval_y_dynamic)
-    recbg = Cpt(
-    EpicsSignal, name="recbg", read_pv="XOMNYI-XEYE-RECBG:0",auto_monitor=True
-    )
-    stage_pos_x_dynamic = {
-        f"stage_pos_x_{i}": (EpicsSignal, f"XOMNYI-XEYE-STAGEPOSX:{i}", {"auto_monitor": True}) for i in range(1, 6)
-    }
-    stage_pos_x = Dcpt(stage_pos_x_dynamic)
-    mvx = Cpt(
-    EpicsSignal, name="mvx", read_pv="XOMNYI-XEYE-MVX:0",auto_monitor=True
-    )
-    mvy = Cpt(
-    EpicsSignal, name="mvy", read_pv="XOMNYI-XEYE-MVY:0",auto_monitor=True
-    )
+    )    
+    step = Cpt(Signal, value=0)
+    recbg = Cpt(Signal, value=0)
+    mvx = Cpt(Signal, value=0)
+    mvy = Cpt(Signal, value=0)
 
+    fit_array = Cpt(Signal, value=np.zeros((3, 10)))
+    fit_params_x = Cpt(Signal, value=np.zeros((2, 3)))
+    fit_params_y = Cpt(Signal, value=np.zeros((2, 3)))
 
+    # Generate width_y_0 to width_y_10
+    for i in range(11):
+        locals()[f'width_y_{i}'] = Cpt(Signal, value=0)
+    
+    # Generate width_x_0 to width_x_10
+    for i in range(11):
+        locals()[f'width_x_{i}'] = Cpt(Signal, value=0)
+    
+    # Generate xval_x_0 to xval_x_10
+    for i in range(11):
+        locals()[f'xval_x_{i}'] = Cpt(Signal, value=0)
+    
+    # Generate yval_y_0 to yval_y_10
+    for i in range(11):
+        locals()[f'yval_y_{i}'] = Cpt(Signal, value=0)
+    
+    # Generate stage_pos_x_1 to stage_pos_x_5
+    for i in range(1, 6):
+        locals()[f'stage_pos_x_{i}'] = Cpt(Signal, value=0)

csaxs_bec/devices/panda_box/panda_box.py

@@ -0,0 +1,103 @@
+"""Module to integrate the PandaBox for cSAXS measurements."""
+
+import time
+
+from bec_lib.logger import bec_logger
+from ophyd_devices import StatusBase
+from ophyd_devices.devices.panda_box.panda_box import PandaBox, PandaState
+
+logger = bec_logger.logger
+
+
+class PandaBoxCSAXS(PandaBox):
+    """
+    PandaBox integration for cSAXS. This class implements cSAXS specific logic for the PandaBox integration.
+
+    TODO: This logic is not yet mapped to any existing hardware. Adapt Docstring once the hardware is defined and integrated.
+    """
+
+    def on_init(self):
+        super().on_init()
+        self._acquisition_group = "burst"
+        self._timeout_on_completed = 10
+
+    def on_stage(self):
+        start_time = time.time()
+        super().on_stage()
+        # TODO, adjust as seen fit.
+        # Adjust the acquisition group based on scan parameters if needed
+        if self.scan_info.msg.scan_type == "fly":
+            self._acquisition_group = "fly"
+        elif self.scan_info.msg.scan_type == "step":
+            if self.scan_info.msg.scan_parameters["frames_per_trigger"] == 1:
+                self._acquisition_group = "monitored"
+            else:
+                self._acquisition_group = "burst"
+
+        logger.info(f"PandaBox {self.name} on_stage completed in {time.time() - start_time:.3f}s.")
+
+    def on_complete(self):
+        """On complete is called after the scan is complete. We need to wait for the capture to complete before we can disarm the PandaBox."""
+
+        def _check_capture_complete():
+            captured = 0
+            start_time = time.monotonic()
+            try:
+                expected_points = int(
+                    self.scan_info.msg.num_points
+                    * self.scan_info.msg.scan_parameters.get("frames_per_trigger", 1)
+                )
+                while captured < expected_points:
+                    ret = self.send_raw("*PCAP.CAPTURED?")
+                    captured = int(ret[0].split("=")[-1])
+                    time.sleep(0.01)
+                    if (time.monotonic() - start_time) > self._timeout_on_completed / 2:
+                        logger.info(
+                            f"Waiting for capture on device {self.name} to complete: captured {captured}/{expected_points} points."
+                        )
+                    if (time.monotonic() - start_time) > self._timeout_on_completed:
+                        raise TimeoutError(
+                            f"Pandabox {self.name} did not complete after {self._timeout_on_completed} with points captured {captured}/{expected_points}"
+                        )
+            finally:
+                self._disarm()
+
+        status_captured = self.task_handler.submit_task(_check_capture_complete, run=True)
+        self.cancel_on_stop(status_captured)
+        return status_captured
+
+
+if __name__ == "__main__":
+    import time
+
+    panda = PandaBoxCSAXS(
+        name="omny_panda",
+        host="omny-panda.psi.ch",
+        signal_alias={
+            "FMC_IN.VAL2.Value": "alias",
+            "FMC_IN.VAL1.Min": "alias2",
+            "FMC_IN.VAL1.Max": "alias3",
+            "FMC_IN.VAL1.Mean": "alias4",
+        },
+    )
+    panda.on_connected()
+    status = StatusBase(obj=panda)
+    panda.add_status_callback(
+        status=status, success=[PandaState.DISARMED], failure=[PandaState.READY]
+    )
+    panda.stop()
+    status.wait(timeout=2)
+    panda.unstage()
+    logger.info(f"Panda connected")
+    ret = panda.stage()
+    logger.info(f"Panda staged")
+    ret = panda.pre_scan()
+    ret.wait(timeout=5)
+    logger.info(f"Panda pre scan done")
+    time.sleep(5)
+    panda.stop()
+    st = panda.complete()
+    st.wait(timeout=5)
+    logger.info(f"Measurement completed")
+    panda.unstage()
+    logger.info(f"Panda Unstaged")

csaxs_bec/devices/panda_box/panda_box_omny.py

@@ -0,0 +1,99 @@
+"""Module to integrate the PandaBox for cSAXS measurements."""
+
+import time
+
+from bec_lib.logger import bec_logger
+from ophyd_devices import StatusBase
+from ophyd_devices.devices.panda_box.panda_box import PandaBox, PandaState
+
+logger = bec_logger.logger
+
+
+class PandaBoxOMNY(PandaBox):
+    """PandaBox integration for OMNY. This class implements OMNY specific logic for the PandaBox integration."""
+
+    def on_init(self):
+        super().on_init()
+        self._acquisition_group = "burst"
+        self._timeout_on_completed = 10
+
+    def on_stage(self):
+        start_time = time.time()
+        super().on_stage()
+        # TODO, adjust as seen fit.
+        # Adjust the acquisition group based on scan parameters if needed
+        if self.scan_info.msg.scan_type == "fly":
+            self._acquisition_group = "fly"
+        elif self.scan_info.msg.scan_type == "step":
+            if self.scan_info.msg.scan_parameters["frames_per_trigger"] == 1:
+                self._acquisition_group = "monitored"
+            else:
+                self._acquisition_group = "burst"
+
+        logger.info(f"PandaBox {self.name} on_stage completed in {time.time() - start_time:.3f}s.")
+
+    def on_complete(self):
+        """On complete is called after the scan is complete. We need to wait for the capture to complete before we can disarm the PandaBox."""
+
+        def _check_capture_complete():
+            captured = 0
+            start_time = time.monotonic()
+            try:
+                expected_points = int(
+                    self.scan_info.msg.num_points
+                    * self.scan_info.msg.scan_parameters.get("frames_per_trigger", 1)
+                )
+                while captured < expected_points:
+                    ret = self.send_raw("*PCAP.CAPTURED?")
+                    captured = int(ret[0].split("=")[-1])
+                    time.sleep(0.01)
+                    if (time.monotonic() - start_time) > self._timeout_on_completed / 2:
+                        logger.info(
+                            f"Waiting for capture on device {self.name} to complete: captured {captured}/{expected_points} points."
+                        )
+                    if (time.monotonic() - start_time) > self._timeout_on_completed:
+                        raise TimeoutError(
+                            f"Pandabox {self.name} did not complete after {self._timeout_on_completed} with points captured {captured}/{expected_points}"
+                        )
+            finally:
+                self._disarm()
+
+        status_captured = self.task_handler.submit_task(_check_capture_complete, run=True)
+        self.cancel_on_stop(status_captured)
+        return status_captured
+
+
+if __name__ == "__main__":
+    import time
+
+    panda = PandaBoxOMNY(
+        name="omny_panda",
+        host="omny-panda.psi.ch",
+        signal_alias={
+            "FMC_IN.VAL2.Value": "alias",
+            "FMC_IN.VAL1.Min": "alias2",
+            "FMC_IN.VAL1.Max": "alias3",
+            "FMC_IN.VAL1.Mean": "alias4",
+        },
+    )
+    panda.on_connected()
+    status = StatusBase(obj=panda)
+    panda.add_status_callback(
+        status=status, success=[PandaState.DISARMED], failure=[PandaState.READY]
+    )
+    panda.stop()
+    status.wait(timeout=2)
+    panda.unstage()
+    logger.info(f"Panda connected")
+    ret = panda.stage()
+    logger.info(f"Panda staged")
+    ret = panda.pre_scan()
+    ret.wait(timeout=5)
+    logger.info(f"Panda pre scan done")
+    time.sleep(5)
+    panda.stop()
+    st = panda.complete()
+    st.wait(timeout=5)
+    logger.info(f"Measurement completed")
+    panda.unstage()
+    logger.info(f"Panda Unstaged")

csaxs_bec/devices/sim/__init__.py

@@ -0,0 +1,2 @@
+"""Simulation devices for local csaxs_bec development."""
+

csaxs_bec/devices/sim/flomni_sim.py

@@ -0,0 +1,474 @@
+from __future__ import annotations
+
+import json
+import threading
+
+import numpy as np
+from ophyd import Component as Cpt
+from ophyd import Device, Kind, Signal
+from ophyd import DynamicDeviceComponent as Dcpt
+from ophyd_devices import SimPositioner
+from ophyd_devices.utils.bec_signals import PreviewSignal
+from prettytable import PrettyTable
+
+
+class FlomniSimController:
+    """Controller shim that exposes FLOMNI-specific controller APIs for local simulation."""
+
+    USER_ACCESS = [
+        "socket_put_and_receive",
+        "socket_put_confirmed",
+        "drive_axis_to_limit",
+        "get_motor_limit_switch",
+        "all_axes_referenced",
+        "axis_is_referenced",
+        "is_motor_on",
+        "feedback_disable",
+        "feedback_enable_with_reset",
+        "feedback_enable_without_reset",
+        "feedback_is_running",
+        "laser_tracker_on",
+        "laser_tracker_off",
+        "laser_tracker_show_all",
+        "laser_tracker_check_signalstrength",
+        "laser_tracker_check_enabled",
+        "show_signal_strength_interferometer",
+        "read_ssi_interferometer",
+        "show_cyclic_error_compensation",
+        "get_pid_x",
+        "set_rotation_angle",
+        "fosaz_light_curtain_is_triggered",
+        "lights_off",
+        "lights_on",
+        "galil_show_all",
+        "move_open_loop_steps",
+        "find_reference_mark",
+    ]
+
+    def __init__(self, device: FlomniSimPositioner):
+        self.device = device
+        self.connected = True
+        self._feedback_running = False
+        self._laser_tracker_enabled = False
+        self._lights_on = True
+        self._mount_mode = False
+        self._confirm = 0
+        self._pid_x = -0.06
+        self._rt_angle = 0.0
+        self._sensor_voltage = -2.4
+        self.tracker_info = {
+            "enabled_y": True,
+            "enabled_z": True,
+            "tracker_intensity": 15000,
+            "threshold_intensity_y": 9000,
+            "threshold_intensity_z": 9000,
+        }
+
+    def socket_put_and_receive(self, cmd: str) -> str:
+        cmd_norm = cmd.strip().lower()
+        if "mg mntmod" in cmd_norm:
+            return "1" if self._mount_mode else "0"
+        if "mg mntprgs" in cmd_norm:
+            return "0"
+        if "mg confirm" in cmd_norm:
+            return str(self._confirm)
+        if "mg @out[9]" in cmd_norm:
+            return "0"
+        if "mg@an[1]" in cmd_norm:
+            return str(self._sensor_voltage)
+        if "mg @in[14]" in cmd_norm:
+            return "0"
+        if "axisref" in cmd_norm:
+            return "1"
+        if cmd_norm == "g":
+            return str(self._pid_x)
+        if cmd_norm == "o":
+            return "1"
+        if cmd_norm.startswith("tp") or cmd_norm.startswith("td"):
+            return str(float(self.device.readback.get()))
+        if cmd_norm.startswith("mg_bg"):
+            return "0"
+        return "0"
+
+    def socket_put_confirmed(self, cmd: str) -> None:
+        cmd_norm = cmd.strip().lower()
+        if "xq#mntmode" in cmd_norm:
+            self._mount_mode = True
+        elif "xq#posmode" in cmd_norm:
+            self._mount_mode = False
+        elif cmd_norm.startswith("confirm="):
+            try:
+                self._confirm = int(float(cmd_norm.split("=")[1]))
+            except ValueError:
+                self._confirm = 0
+        elif cmd_norm == "l0":
+            self._feedback_running = False
+        elif cmd_norm in ("l1", "l3"):
+            self._feedback_running = True
+        elif cmd_norm == "t0":
+            self._laser_tracker_enabled = False
+        elif cmd_norm == "t1":
+            self._laser_tracker_enabled = True
+        elif cmd_norm == "cb15":
+            self._lights_on = False
+        elif cmd_norm == "sb15":
+            self._lights_on = True
+
+    def drive_axis_to_limit(self, axis_Id_numeric=None, direction: str = "forward") -> None:
+        low, high = self.device.limits
+        if low >= high:
+            return
+        target = high if direction == "forward" else low
+        status = self.device.move(target)
+        status.wait(timeout=2)
+
+    def get_motor_limit_switch(self, axis_id=None) -> tuple[bool, bool]:
+        low, high = self.device.limits
+        if low >= high:
+            return (False, False)
+        pos = float(self.device.readback.get())
+        eps = max(self.device.tolerance.get(), 0.05)
+        return (abs(pos - low) <= eps, abs(pos - high) <= eps)
+
+    def all_axes_referenced(self) -> bool:
+        return True
+
+    def axis_is_referenced(self, axis_id_numeric=None) -> bool:
+        return True
+
+    def is_motor_on(self, axis_id=None) -> bool:
+        return True
+
+    def feedback_disable(self) -> None:
+        self._feedback_running = False
+
+    def feedback_enable_with_reset(self) -> None:
+        self._feedback_running = True
+
+    def feedback_enable_without_reset(self) -> None:
+        self._feedback_running = True
+
+    def feedback_is_running(self) -> bool:
+        return self._feedback_running
+
+    def laser_tracker_on(self) -> None:
+        self._laser_tracker_enabled = True
+
+    def laser_tracker_off(self) -> None:
+        self._laser_tracker_enabled = False
+
+    def laser_tracker_show_all(self) -> None:
+        t = PrettyTable()
+        t.title = "Simulated Laser Tracker"
+        t.field_names = ["name", "value"]
+        for key, val in self.tracker_info.items():
+            t.add_row([key, val])
+        print(t)
+
+    def laser_tracker_check_signalstrength(self) -> bool:
+        return True
+
+    def laser_tracker_check_enabled(self) -> bool:
+        return self._laser_tracker_enabled
+
+    def show_signal_strength_interferometer(self) -> None:
+        print("Simulated interferometer signal strength: OK")
+
+    def read_ssi_interferometer(self) -> float:
+        return 12000.0
+
+    def show_cyclic_error_compensation(self) -> None:
+        print("Simulated cyclic error compensation: initialized")
+
+    def get_pid_x(self) -> float:
+        return self._pid_x
+
+    def set_rotation_angle(self, val: float) -> None:
+        self._rt_angle = float(val)
+
+    def fosaz_light_curtain_is_triggered(self) -> bool:
+        return False
+
+    def lights_off(self) -> None:
+        self._lights_on = False
+
+    def lights_on(self) -> None:
+        self._lights_on = True
+
+    def galil_show_all(self) -> None:
+        print(f"Simulated controller for {self.device.name} connected: {self.connected}")
+
+    def move_open_loop_steps(self, axis_id_numeric: int, steps: int, **_kwargs) -> None:
+        # no-op in simulation
+        _ = axis_id_numeric, steps
+
+    def find_reference_mark(self, axis_id_numeric: int, *_args) -> None:
+        # no-op in simulation
+        _ = axis_id_numeric
+
+
+class JSONSafeSignal(Signal):
+    """Signal that coerces complex Python objects to JSON strings for ophyd describe()."""
+
+    def _coerce(self, value):
+        if isinstance(value, np.ndarray):
+            value = value.tolist()
+        if isinstance(value, (dict, list, tuple)):
+            return json.dumps(value)
+        return value
+
+    def put(self, value, *args, **kwargs):
+        return super().put(self._coerce(value), *args, **kwargs)
+
+    def set(self, value, *args, **kwargs):
+        return super().set(self._coerce(value), *args, **kwargs)
+
+
+class FlomniSimPositioner(SimPositioner):
+    """Simulated positioner that preserves FLOMNI controller-style API."""
+
+    USER_ACCESS = ["sim", "readback", "registered_proxies", "controller"]
+
+    def __init__(
+        self,
+        name: str,
+        *,
+        axis_Id: str | None = None,
+        host: str | None = None,
+        port: int | None = None,
+        sign: int = 1,
+        limits: list[float] | tuple[float, float] | None = None,
+        **kwargs,
+    ):
+        super().__init__(name=name, limits=limits, **kwargs)
+        self.axis_Id = axis_Id
+        self.host = host
+        self.port = port
+        self.sign = sign
+        self.controller = FlomniSimController(self)
+
+    @property
+    def axis_Id_numeric(self) -> int | None:
+        if not self.axis_Id:
+            return None
+        return ord(self.axis_Id.lower()) - 97
+
+
+class FlomniSimCamera(Device):
+    """Lightweight camera simulation with live mode controls for FLOMNI/OMNY GUI usage."""
+
+    USER_ACCESS = ["start_live_mode", "stop_live_mode", "live_mode_enabled", "image", "preview"]
+
+    image = Cpt(PreviewSignal, name="image", ndim=2, num_rotation_90=0, transpose=False)
+    preview = Cpt(PreviewSignal, name="preview", ndim=2, num_rotation_90=0, transpose=False)
+    live_mode_enabled = Cpt(
+        Signal,
+        name="live_mode_enabled",
+        value=False,
+        kind=Kind.config,
+    )
+
+    def __init__(
+        self,
+        name: str,
+        *,
+        camera_id: int | None = None,
+        camera_ID: int | None = None,
+        url: str | None = None,
+        bits_per_pixel: int = 8,
+        channels: int = 1,
+        m_n_colormode: int = 0,
+        num_rotation_90: int = 0,
+        transpose: bool = False,
+        force_monochrome: bool = False,
+        **kwargs,
+    ):
+        super().__init__(name=name, **kwargs)
+        self.camera_id = camera_id if camera_id is not None else camera_ID
+        self.url = url
+        self.bits_per_pixel = bits_per_pixel
+        self.channels = channels
+        self.m_n_colormode = m_n_colormode
+        self.force_monochrome = force_monochrome
+        self.image.num_rotation_90 = num_rotation_90
+        self.image.transpose = transpose
+        self.preview.num_rotation_90 = num_rotation_90
+        self.preview.transpose = transpose
+        self._frame_number = 0
+        self._shutdown_event = threading.Event()
+        self._live_mode_thread: threading.Thread | None = None
+        self.live_mode_enabled.subscribe(self._on_live_mode_enabled_changed, run=False)
+
+    def start_live_mode(self) -> None:
+        self.live_mode_enabled.put(True)
+
+    def stop_live_mode(self) -> None:
+        self.live_mode_enabled.put(False)
+
+    def _on_live_mode_enabled_changed(self, *args, value, **kwargs):
+        _ = args, kwargs
+        if bool(value):
+            self._start_live_mode()
+        else:
+            self._stop_live_mode()
+
+    def _start_live_mode(self) -> None:
+        if self._live_mode_thread and self._live_mode_thread.is_alive():
+            return
+        self._shutdown_event.clear()
+        self._live_mode_thread = threading.Thread(target=self._live_mode_loop, daemon=True)
+        self._live_mode_thread.start()
+
+    def _stop_live_mode(self) -> None:
+        if self._live_mode_thread is None:
+            return
+        self._shutdown_event.set()
+        self._live_mode_thread.join(timeout=1)
+        self._live_mode_thread = None
+        self._shutdown_event.clear()
+
+    def _live_mode_loop(self) -> None:
+        while not self._shutdown_event.is_set():
+            frame = self._generate_frame()
+            self.image.put(frame)
+            self.preview.put(frame)
+            self._shutdown_event.wait(0.2)
+
+    def _generate_frame(self) -> np.ndarray:
+        self._frame_number += 1
+        x = np.linspace(0, 255, 320, dtype=np.uint8)
+        y = np.linspace(0, 255, 240, dtype=np.uint8)[:, None]
+        frame = ((x + y + self._frame_number) % 255).astype(np.uint8)
+        return frame
+
+    def destroy(self):
+        self._stop_live_mode()
+        return super().destroy()
+
+
+class FlomniSimFastShutter(Device):
+    USER_ACCESS = ["fshopen", "fshclose", "fshstatus", "fshinfo", "fshstatus_readback"]
+    shutter = Cpt(Signal, name="shutter", value=0)
+
+    def fshopen(self):
+        self.shutter.put(1)
+
+    def fshclose(self):
+        self.shutter.put(0)
+
+    def fshstatus(self):
+        return int(self.shutter.get())
+
+    def fshstatus_readback(self):
+        return int(self.shutter.get())
+
+    def fshinfo(self):
+        print("Using simulated fast shutter.")
+
+
+class FlomniSimXRayAlignGUI(Device):
+    """Signal-only X-ray alignment GUI backend for simulation."""
+
+    update_frame_acqdone = Cpt(Signal, value=0)
+    update_frame_acq = Cpt(Signal, value=0)
+    enable_mv_x = Cpt(Signal, value=0)
+    enable_mv_y = Cpt(Signal, value=0)
+    send_message = Cpt(Signal, value="")
+    sample_name = Cpt(Signal, value="")
+    angle = Cpt(Signal, value=0)
+    pixel_size = Cpt(Signal, value=0)
+    submit = Cpt(Signal, name="submit", value=0)
+    step = Cpt(Signal, value=0)
+    recbg = Cpt(Signal, value=0)
+    mvx = Cpt(Signal, value=0)
+    mvy = Cpt(Signal, value=0)
+    fit_array = Cpt(Signal, value=np.zeros((3, 10)))
+    fit_params_x = Cpt(JSONSafeSignal, value="{}")
+    fit_params_y = Cpt(JSONSafeSignal, value="{}")
+
+    for i in range(11):
+        locals()[f"width_y_{i}"] = Cpt(Signal, value=0)
+    for i in range(11):
+        locals()[f"width_x_{i}"] = Cpt(Signal, value=0)
+    for i in range(11):
+        locals()[f"xval_x_{i}"] = Cpt(Signal, value=0)
+    for i in range(11):
+        locals()[f"yval_y_{i}"] = Cpt(Signal, value=0)
+    for i in range(1, 6):
+        locals()[f"stage_pos_x_{i}"] = Cpt(Signal, value=0)
+
+
+class FlomniSimSampleStorage(Device):
+    USER_ACCESS = [
+        "is_sample_slot_used",
+        "is_sample_in_gripper",
+        "set_sample_slot",
+        "unset_sample_slot",
+        "set_sample_in_gripper",
+        "unset_sample_in_gripper",
+        "get_sample_name",
+        "show_all",
+    ]
+
+    sample_placed = Dcpt({f"sample{i}": (Signal, None, {"value": 0}) for i in range(21)})
+    sample_names = Dcpt({f"sample{i}": (Signal, None, {"value": "-"}) for i in range(21)})
+    sample_in_gripper = Cpt(Signal, name="sample_in_gripper", value=0)
+    sample_in_gripper_name = Cpt(Signal, name="sample_in_gripper_name", value="-")
+
+    def set_sample_slot(self, slot_nr: int, name: str) -> None:
+        getattr(self.sample_placed, f"sample{slot_nr}").set(1)
+        getattr(self.sample_names, f"sample{slot_nr}").set(name)
+
+    def unset_sample_slot(self, slot_nr: int) -> None:
+        getattr(self.sample_placed, f"sample{slot_nr}").set(0)
+        getattr(self.sample_names, f"sample{slot_nr}").set("-")
+
+    def set_sample_in_gripper(self, name: str) -> None:
+        self.sample_in_gripper.set(1)
+        self.sample_in_gripper_name.set(name)
+
+    def unset_sample_in_gripper(self) -> None:
+        self.sample_in_gripper.set(0)
+        self.sample_in_gripper_name.set("-")
+
+    def is_sample_slot_used(self, slot_nr: int) -> bool:
+        return bool(getattr(self.sample_placed, f"sample{slot_nr}").get())
+
+    def is_sample_in_gripper(self) -> bool:
+        return bool(self.sample_in_gripper.get())
+
+    def get_sample_name(self, slot_nr: int) -> str:
+        return str(getattr(self.sample_names, f"sample{slot_nr}").get())
+
+    def show_all(self) -> None:
+        t = PrettyTable()
+        t.title = "flOMNI sample storage (sim)"
+        t.field_names = ["slot", "used", "name"]
+        for slot in range(21):
+            t.add_row([slot, int(self.is_sample_slot_used(slot)), self.get_sample_name(slot)])
+        print(t)
+
+
+class FlomniSimTempHum(Device):
+    USER_ACCESS = ["show_all", "help"]
+
+    temperature_mirror = Cpt(Signal, value=22.0)
+    temperature_osa = Cpt(Signal, value=22.0)
+    temperature_heater = Cpt(Signal, value=23.0)
+    humidity_sensor1 = Cpt(Signal, value=35.0)
+    humidity_sensor2 = Cpt(Signal, value=34.0)
+    flow = Cpt(Signal, value=2.0)
+    suction = Cpt(Signal, value=1.0)
+
+    def show_all(self):
+        print("=== flOMNI Temperature & Humidity (sim) ===")
+        print(f"Mirror temperature: {self.temperature_mirror.get():.1f} C")
+        print(f"OSA temperature: {self.temperature_osa.get():.1f} C")
+        print(f"Heater temperature: {self.temperature_heater.get():.1f} C")
+        print(f"Humidity sensor 1: {self.humidity_sensor1.get():.1f} %RH")
+        print(f"Humidity sensor 2: {self.humidity_sensor2.get():.1f} %RH")
+        print(f"Flow: {self.flow.get():.1f} sccm")
+        print(f"Suction: {self.suction.get():.1f}")
+
+    def help(self):
+        print("show_all() - display current simulated values")

csaxs_bec/scans/LamNIFermatScan.py

@@ -210,7 +210,7 @@ class LamNIFermatScan(ScanBase, LamNIMixin):
     arg_input = {}
     arg_bundle_size = {"bundle": len(arg_input), "min": None, "max": None}
 
-    def __init__(self, *args, parameter: dict = None, **kwargs):
+    def __init__(self, *args, parameter: dict = None, frames_per_trigger:int=1, exp_time:float=0,**kwargs):
         """
         A LamNI scan following Fermat's spiral.
 
@@ -230,10 +230,10 @@ class LamNIFermatScan(ScanBase, LamNIMixin):
 
         Examples:
             >>> scans.lamni_fermat_scan(fov_size=[20], step=0.5, exp_time=0.1)
-            >>> scans.lamni_fermat_scan(fov_size=[20, 25], center_x=0.02, center_y=0, shift_x=0, shift_y=0, angle=0, step=0.5, fov_circular=0, exp_time=0.1)
+            >>> scans.lamni_fermat_scan(fov_size=[20, 25], center_x=0.02, center_y=0, shift_x=0, shift_y=0, angle=0, step=0.5, fov_circular=0, exp_time=0.1, frames_per_trigger=1)
         """
 
-        super().__init__(parameter=parameter, **kwargs)
+        super().__init__(parameter=parameter, frames_per_trigger=frames_per_trigger, exp_time=exp_time,**kwargs)
         self.axis = []
         scan_kwargs = parameter.get("kwargs", {})
         self.fov_size = scan_kwargs.get("fov_size")
@@ -482,6 +482,7 @@ class LamNIFermatScan(ScanBase, LamNIMixin):
         yield from self.open_scan()
         yield from self.stage()
         yield from self.run_baseline_reading()
+        yield from self.pre_scan()
         yield from self.scan_core()
         yield from self.finalize()
         yield from self.unstage()

csaxs_bec/scans/flomni_fermat_scan.py

@@ -52,6 +52,7 @@ class FlomniFermatScan(SyncFlyScanBase):
         angle: float = None,
         corridor_size: float = 3,
         parameter: dict = None,
+        frames_per_trigger:int=1,
         **kwargs,
     ):
         """
@@ -62,7 +63,8 @@ class FlomniFermatScan(SyncFlyScanBase):
             fovy(float) [um]: Fov in the piezo plane (i.e. piezo range). Max 100 um
             cenx(float) [um]: center position in x.
             ceny(float) [um]: center position in y.
-            exp_time(float) [s]: exposure time
+            exp_time(float) [s]: exposure time per burst frame
+            frames_per_trigger(int) : Number of burst frames per point
             step(float) [um]: stepsize
             zshift(float) [um]: shift in z
             angle(float) [deg]: rotation angle (will rotate first)
@@ -71,10 +73,10 @@ class FlomniFermatScan(SyncFlyScanBase):
         Returns:
 
         Examples:
-            >>> scans.flomni_fermat_scan(fovx=20, fovy=25, cenx=0.02, ceny=0, zshift=0, angle=0, step=0.5, exp_time=0.01)
+            >>> scans.flomni_fermat_scan(fovx=20, fovy=25, cenx=0.02, ceny=0, zshift=0, angle=0, step=0.5, exp_time=0.01, frames_per_trigger=1)
         """
 
-        super().__init__(parameter=parameter, exp_time=exp_time, **kwargs)
+        super().__init__(parameter=parameter, exp_time=exp_time, frames_per_trigger=frames_per_trigger, **kwargs)
         self.show_live_table = False
         self.axis = []
         self.fovx = fovx
@@ -323,6 +325,7 @@ class FlomniFermatScan(SyncFlyScanBase):
         yield from self.stage()
         yield from self.run_baseline_reading()
         yield from self._prepare_setup_part2()
+        yield from self.pre_scan()
         yield from self.scan_core()
         yield from self.finalize()
         yield from self.unstage()

csaxs_bec/scans/jungfrau_joch_scan.py

@@ -1,4 +1,4 @@
-""" Module with JungfrauJochTestScan class. """
+"""Module with JungfrauJochTestScan class."""
 
 from bec_lib import bec_logger
 from bec_server.scan_server.scans import AsyncFlyScanBase, ScanAbortion

csaxs_bec/scans/omny_fermat_scan.py

@@ -51,6 +51,7 @@ class OMNYFermatScan(SyncFlyScanBase):
         angle: float = None,
         corridor_size: float = 3,
         parameter: dict = None,
+        frames_per_trigger:int=1,
         **kwargs,
     ):
         """
@@ -62,6 +63,7 @@ class OMNYFermatScan(SyncFlyScanBase):
             cenx(float) [um]: center position in x.
             ceny(float) [um]: center position in y.
             exp_time(float) [s]: exposure time
+            frames_per_trigger:int: Number of burst frames per trigger, defaults to 1.
             step(float) [um]: stepsize
             zshift(float) [um]: shift in z
             angle(float) [deg]: rotation angle (will rotate first)
@@ -73,7 +75,7 @@ class OMNYFermatScan(SyncFlyScanBase):
             >>> scans.omny_fermat_scan(fovx=20, fovy=25, cenx=10, ceny=0, zshift=0, angle=0, step=2, exp_time=0.01)
         """
 
-        super().__init__(parameter=parameter, **kwargs)
+        super().__init__(parameter=parameter, exp_time=exp_time, frames_per_trigger=frames_per_trigger, **kwargs)
         self.axis = []
         self.fovx = fovx
         self.fovy = fovy
@@ -299,6 +301,7 @@ class OMNYFermatScan(SyncFlyScanBase):
         yield from self.stage()
         yield from self.run_baseline_reading()
         yield from self._prepare_setup_part2()
+        yield from self.pre_scan()
         yield from self.scan_core()
         yield from self.finalize()
         yield from self.unstage()

docs/user/ptychography/flomni.md

@@ -193,14 +193,15 @@ The basic scan function can be called by `scans.flomni_fermat_scan()` and offers
 | fovy (float) | Fov in the piezo plane (i.e. piezo range). Max 100 um |
 | cenx (float) | center position in x |
 | ceny (float) | center position in y |
-| exp_time (float) | exposure time |
+| exp_time (float) | exposure time per frame |
+| frames_per_trigger(int) | Number of burst frames per position |
 | step (float) | stepsize |
 | zshift (float) | shift in z |
 | angle (float) | rotation angle (will rotate first) |
 | corridor_size (float) | corridor size for the corridor optimization. Default 3 um |
 
 Example:  
-`scans.flomni_fermat_scan(fovx=20, fovy=25, cenx=0.02, ceny=0, zshift=0, angle=0, step=0.5, exp_time=0.01)`
+`scans.flomni_fermat_scan(fovx=20, fovy=25, cenx=0.02, ceny=0, zshift=0, angle=0, step=0.5, exp_time=0.01, frames_per_trigger=1)`
 
 #### Overview of the alignment steps
 

docs/user/ptychography/omny.md

@@ -327,14 +327,15 @@ The basic scan function can be called by `scans.omny_fermat_scan()` and offers a
 | fovy (float) | Fov in the piezo plane (i.e. piezo range). Max 100 um |
 | cenx (float) | center position in x |
 | ceny (float) | center position in y |
-| exp_time (float) | exposure time |
+| exp_time (float) | exposure time per frame |
+| frames_per_trigger(int) | Number of burst frames per position |
 | step (float) | stepsize |
 | zshift (float) | shift in z |
 | angle (float) | rotation angle (will rotate first) |
 | corridor_size (float) | corridor size for the corridor optimization. Default 3 um |
 
 Example:  
-`scans.omny_fermat_scan(fovx=20, fovy=25, cenx=0.02, ceny=0, zshift=0, angle=0, step=0.5, exp_time=0.01)`
+`scans.omny_fermat_scan(fovx=20, fovy=25, cenx=0.02, ceny=0, zshift=0, angle=0, step=0.5, exp_time=0.01, frames_per_trigger=1)`
 
 #### Overview of the alignment steps
 

pyproject.toml

@@ -6,7 +6,7 @@ build-backend = "hatchling.build"
 name = "csaxs_bec"
 version = "0.0.0"
 description = "The cSAXS plugin repository for BEC"
-requires-python = ">=3.10"
+requires-python = ">=3.11"
 classifiers = [
     "Development Status :: 3 - Alpha",
     "Programming Language :: Python :: 3",

tests/tests_bec_ipython_client/test_x_ray_eye_align.py

@@ -35,16 +35,16 @@ def test_save_frame(bec_client_mock):
     lamni = LamNI(client)
     align = XrayEyeAlign(client, lamni)
     with mock.patch(
-        "csaxs_bec.bec_ipython_client.plugins.LamNI.x_ray_eye_align.epics_put"
+        "csaxs_bec.bec_ipython_client.plugins.LamNI.alignment.epics_put"
     ) as epics_put_mock:
         align.save_frame()
         epics_put_mock.assert_called_once_with("XOMNYI-XEYE-SAVFRAME:0", 1)
 
 
 def test_update_frame(bec_client_mock):
-    epics_put = "csaxs_bec.bec_ipython_client.plugins.LamNI.x_ray_eye_align.epics_put"
-    epics_get = "csaxs_bec.bec_ipython_client.plugins.LamNI.x_ray_eye_align.epics_get"
-    fshopen = "csaxs_bec.bec_ipython_client.plugins.LamNI.x_ray_eye_align.fshopen"
+    epics_put = "csaxs_bec.bec_ipython_client.plugins.LamNI.alignment.epics_put"
+    epics_get = "csaxs_bec.bec_ipython_client.plugins.LamNI.alignment.epics_get"
+    fshopen = "csaxs_bec.bec_ipython_client.plugins.LamNI.alignment.fshopen"
     client = bec_client_mock
     client.device_manager.devices.xeye = DeviceBase(
         name="xeye",

tests/tests_devices/test_panda.py

@@ -0,0 +1,190 @@
+"""Module for testing the PandaBoxCSAXS and PandaBoxOMNY devices."""
+
+# pylint: skip-file
+from __future__ import annotations
+
+from unittest import mock
+
+import pytest
+from ophyd import Staged
+
+from csaxs_bec.devices.panda_box.panda_box import PandaBoxCSAXS
+from csaxs_bec.devices.panda_box.panda_box_omny import PandaBoxOMNY
+
+
+@pytest.fixture
+def panda_omny():
+    dev_name = "panda_omny"
+    dev = PandaBoxOMNY(
+        name=dev_name,
+        host="omny-panda-box.psi.ch",
+        signal_alias={
+            "FMC_IN.VAL1.Min": "cap_voltage_fzp_y_min",
+            "FMC_IN.VAL1.Max": "cap_voltage_fzp_y_max",
+            "FMC_IN.VAL1.Mean": "cap_voltage_fzp_y_mean",
+            "FMC_IN.VAL2.Min": "cap_voltage_fzp_x_min",
+            "FMC_IN.VAL2.Max": "cap_voltage_fzp_x_max",
+            "FMC_IN.VAL2.Mean": "cap_voltage_fzp_x_mean",
+        },
+    )
+    yield dev
+
+
+@pytest.fixture
+def panda_csaxs():
+    dev_name = "panda_csaxs"
+    dev = PandaBoxCSAXS(name=dev_name, host="csaxs-panda-box.psi.ch")
+    yield dev
+
+
+def test_panda_omny(panda_omny):
+    assert panda_omny.name == "panda_omny"
+    assert panda_omny.host == "omny-panda-box.psi.ch"
+
+    all_signal_names = [name for name, _ in panda_omny.data.signals]
+    # Check that the signal aliases are correctly set up
+    assert "cap_voltage_fzp_y_min" in all_signal_names
+    assert "cap_voltage_fzp_y_max" in all_signal_names
+    assert "cap_voltage_fzp_y_mean" in all_signal_names
+    assert "cap_voltage_fzp_x_min" in all_signal_names
+    assert "cap_voltage_fzp_x_max" in all_signal_names
+    assert "cap_voltage_fzp_x_mean" in all_signal_names
+
+    # Check that the original signal names are not present
+    assert "FMC_IN.VAL1.Min" not in all_signal_names
+    assert "FMC_IN.VAL1.Max" not in all_signal_names
+    assert "FMC_IN.VAL1.Mean" not in all_signal_names
+    assert "FMC_IN.VAL2.Min" not in all_signal_names
+    assert "FMC_IN.VAL2.Max" not in all_signal_names
+    assert "FMC_IN.VAL2.Mean" not in all_signal_names
+
+    assert panda_omny._acquisition_group == "burst"
+    assert panda_omny._timeout_on_completed == 10
+
+
+@pytest.mark.parametrize(
+    "scan_type, frames_per_trigger, expected_acquisition_group",
+    [
+        ("fly", 1, "fly"),
+        ("fly", 5, "fly"),
+        ("step", 10, "burst"),
+        ("step", 1, "monitored"),  # Default case
+    ],
+)
+def test_panda_omny_stage(panda_omny, scan_type, frames_per_trigger, expected_acquisition_group):
+    # Check that the stage signal is present and has the correct PV
+    assert len(panda_omny._status_callbacks) == 0
+
+    panda_omny.scan_info.msg.scan_type = scan_type
+    panda_omny.scan_info.msg.scan_parameters["frames_per_trigger"] = frames_per_trigger
+    panda_omny.stage()
+
+    assert panda_omny._acquisition_group == expected_acquisition_group
+    assert panda_omny.staged == Staged.yes
+
+
+def test_panda_omny_complete(panda_omny):
+    """Test the on_complete method of the PandaBoxCSAXS device."""
+    panda_omny.scan_info.msg.num_points = 1
+    panda_omny.scan_info.msg.scan_parameters["frames_per_trigger"] = 1
+
+    panda_omny._timeout_on_completed = 0.5  # Set a short timeout for testing
+
+    def _mock_return_captured(*args, **kwargs):
+        return ["=0"]
+
+    # Timeout Error on complete
+    with (
+        mock.patch.object(panda_omny, "send_raw", side_effect=_mock_return_captured),
+        mock.patch.object(panda_omny, "_disarm", return_value=None) as mock_disarm,
+    ):
+        status = panda_omny.on_complete()
+        assert status.done is False
+        assert status.success is False
+
+        with pytest.raises(TimeoutError):
+            status.wait(timeout=4)
+        mock_disarm.assert_called_once()
+
+    # Successful complete
+    panda_omny._timeout_on_completed = 5
+    with (
+        mock.patch.object(panda_omny, "send_raw", side_effect=[["=0"], ["=0"], ["=1"]]),
+        mock.patch.object(panda_omny, "_disarm", return_value=None) as mock_disarm,
+    ):
+        status = panda_omny.on_complete()
+        assert status.done is False
+        assert status.success is False
+
+        status.wait(timeout=4)
+        mock_disarm.assert_called_once()
+        assert status.done is True
+        assert status.success is True
+
+
+def test_panda_csaxs(panda_csaxs):
+    assert panda_csaxs.name == "panda_csaxs"
+    assert panda_csaxs.host == "csaxs-panda-box.psi.ch"
+
+    assert panda_csaxs._acquisition_group == "burst"
+    assert panda_csaxs._timeout_on_completed == 10
+
+
+@pytest.mark.parametrize(
+    "scan_type, frames_per_trigger, expected_acquisition_group",
+    [
+        ("fly", 1, "fly"),
+        ("fly", 5, "fly"),
+        ("step", 10, "burst"),
+        ("step", 1, "monitored"),  # Default case
+    ],
+)
+def test_panda_csaxs_stage(panda_csaxs, scan_type, frames_per_trigger, expected_acquisition_group):
+    """Test the on_stage method of the PandaBoxCSAXS device for different scan types and frames per trigger."""
+    assert len(panda_csaxs._status_callbacks) == 0
+
+    panda_csaxs.scan_info.msg.scan_type = scan_type
+    panda_csaxs.scan_info.msg.scan_parameters["frames_per_trigger"] = frames_per_trigger
+    panda_csaxs.stage()
+
+    assert panda_csaxs._acquisition_group == expected_acquisition_group
+    assert panda_csaxs.staged == Staged.yes
+
+
+def test_panda_csaxs_complete(panda_csaxs):
+    """Test the on_complete method of the PandaBoxCSAXS device."""
+    panda_csaxs.scan_info.msg.num_points = 1
+    panda_csaxs.scan_info.msg.scan_parameters["frames_per_trigger"] = 1
+
+    panda_csaxs._timeout_on_completed = 0.5  # Set a short timeout for testing
+
+    def _mock_return_captured(*args, **kwargs):
+        return ["=0"]
+
+    # Timeout Error on complete
+    with (
+        mock.patch.object(panda_csaxs, "send_raw", side_effect=_mock_return_captured),
+        mock.patch.object(panda_csaxs, "_disarm", return_value=None) as mock_disarm,
+    ):
+        status = panda_csaxs.on_complete()
+        assert status.done is False
+        assert status.success is False
+
+        with pytest.raises(TimeoutError):
+            status.wait(timeout=4)
+        mock_disarm.assert_called_once()
+
+    # Successful complete
+    panda_csaxs._timeout_on_completed = 5
+    with (
+        mock.patch.object(panda_csaxs, "send_raw", side_effect=[["=0"], ["=0"], ["=1"]]),
+        mock.patch.object(panda_csaxs, "_disarm", return_value=None) as mock_disarm,
+    ):
+        status = panda_csaxs.on_complete()
+        assert status.done is False
+        assert status.success is False
+
+        status.wait(timeout=4)
+        mock_disarm.assert_called_once()
+        assert status.done is True
+        assert status.success is True

tests/tests_scans/test_lamni_fermat_scan.py

@@ -302,6 +302,36 @@ def device_manager_mock():
                     action="set",
                     parameter={"value": 2.1508313829565293},
                 ),
+                messages.DeviceInstructionMessage(
+                    metadata={
+                        "readout_priority": "monitored",
+                        "RID": "1234",
+                        "device_instr_id": "diid",
+                    },
+                    device=["bpm4i", "lsamx", "lsamy", "samx", "samy"],
+                    action="pre_scan",
+                    parameter={},
+                ),
+                messages.DeviceInstructionMessage(
+                    metadata={
+                        "readout_priority": "monitored",
+                        "RID": "1234",
+                        "device_instr_id": "diid",
+                    },
+                    device="rtx",
+                    action="set",
+                    parameter={"value": 1.3681828686580249},
+                ),
+                messages.DeviceInstructionMessage(
+                    metadata={
+                        "readout_priority": "monitored",
+                        "RID": "1234",
+                        "device_instr_id": "diid",
+                    },
+                    device="rty",
+                    action="set",
+                    parameter={"value": 2.1508313829565293},
+                ),
                 None,
                 messages.DeviceInstructionMessage(
                     metadata={