wip changes from the beamline

csaxs_bec/bec_ipython_client/plugins/flomni/gui_tools.py

@@ -156,7 +156,7 @@ class flomniGuiTools:
             )
             self.progressbar.set_value([progress, subtomo_progress, 0])
             if self.text_box is not None:
-            text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
+                text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
             self.text_box.set_plain_text(text)
 
 

csaxs_bec/bec_ipython_client/plugins/flomni/x_ray_eye_align.py

@@ -17,7 +17,7 @@ umv = builtins.__dict__.get("umv")
 umvr = builtins.__dict__.get("umvr")
 
 if TYPE_CHECKING:
-    from bec_ipython_client.plugins.flomni import Flomni
+    from bec_ipython_client.plugins.flomni.flomni import Flomni
 
 
 class XrayEyeAlign:

csaxs_bec/device_configs/flomni_config.yaml

@@ -365,6 +365,18 @@ rtz:
   readOnly: false
   readoutPriority: on_request
 
+rt_flyer:
+  description: flomni rt flyer
+  deviceClass: csaxs_bec.devices.omny.rt.rt_flomni_ophyd.RtFlomniFlyer
+  deviceConfig:
+    host: mpc2844.psi.ch
+    port: 2222
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: async
+
+
 ############################################################
 ####################### Cameras ############################
 ############################################################

csaxs_bec/devices/npoint/npoint.py

@@ -412,10 +412,11 @@ class NPointAxis(Device, PositionerBase):
         sign=1,
         socket_cls=SocketIO,
         tolerance: float = 0.05,
+        device_manager=None,
         **kwargs,
     ):
         self.controller = NPointController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.axis_Id = axis_Id
         self.sign = sign

csaxs_bec/devices/omny/galil/fgalil_ophyd.py

@@ -175,7 +175,7 @@ class FlomniGalilMotor(Device, PositionerBase):
         **kwargs,
     ):
         self.controller = FlomniGalilController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.axis_Id = axis_Id
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
@@ -212,6 +212,10 @@ class FlomniGalilMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())
@@ -342,10 +346,10 @@ class FlomniGalilMotor(Device, PositionerBase):
         Drive an axis to the limit in a specified direction.
 
         Args:
-            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.        
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.
         """
         self.controller.drive_axis_to_limit(self.axis_Id_numeric, direction)
-        #now force position read to cache
+        # now force position read to cache
         val = self.readback.read()
         self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
 

csaxs_bec/devices/omny/galil/fupr_ophyd.py

@@ -149,7 +149,7 @@ class FuprGalilMotor(Device, PositionerBase):
         **kwargs,
     ):
         self.controller = FuprGalilController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.axis_Id = axis_Id
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
@@ -185,6 +185,10 @@ class FuprGalilMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())

csaxs_bec/devices/omny/galil/lgalil_ophyd.py

@@ -73,6 +73,7 @@ class LamniGalilController(GalilController):
         air_off = bool(self.socket_put_and_receive("MG@OUT[13]"))
         return rt_not_blocked_by_galil and air_off
 
+
 class LamniGalilReadbackSignal(GalilSignalRO):
     @retry_once
     @threadlocked
@@ -99,6 +100,7 @@ class LamniGalilReadbackSignal(GalilSignalRO):
                 logger.warning("Failed to set RT value during readback.")
         return val
 
+
 class LamniGalilMotor(Device, PositionerBase):
     USER_ACCESS = ["controller", "drive_axis_to_limit", "find_reference"]
     readback = Cpt(LamniGalilReadbackSignal, signal_name="readback", kind="hinted")
@@ -132,7 +134,7 @@ class LamniGalilMotor(Device, PositionerBase):
         **kwargs,
     ):
         self.controller = LamniGalilController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.axis_Id = axis_Id
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
@@ -168,6 +170,10 @@ class LamniGalilMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())
@@ -292,7 +298,7 @@ class LamniGalilMotor(Device, PositionerBase):
         Find the reference of the axis.
         """
         self.controller.find_reference(self.axis_Id_numeric)
-        #now force position read to cache
+        # now force position read to cache
         val = self.readback.read()
         self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
 
@@ -301,10 +307,10 @@ class LamniGalilMotor(Device, PositionerBase):
         Drive an axis to the limit in a specified direction.
 
         Args:
-            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.        
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.
         """
         self.controller.drive_axis_to_limit(self.axis_Id_numeric, direction)
-        #now force position read to cache
+        # now force position read to cache
         val = self.readback.read()
         self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
 

csaxs_bec/devices/omny/galil/ogalil_ophyd.py

@@ -46,7 +46,7 @@ class GalilMotorResolution(GalilSignalRO):
     @threadlocked
     def _socket_get(self):
         if self.controller.sock.port == 8083 and self.parent.axis_Id_numeric == 2:
-        # rotation stage
+            # rotation stage
             return 89565.8666667
         else:
             return 51200
@@ -69,37 +69,43 @@ class OMNYGalilReadbackSignal(GalilSignalRO):
         current_pos = float(self.controller.socket_put_and_receive(f"TP{self.parent.axis_Id}"))
         current_pos *= self.parent.sign
         step_mm = self.parent.motor_resolution.get()
-        #here we introduce an offset of 25 to the rotation axis
-        #when setting a position this is taken into account in the controller
-        #that way we just do tomography from 0 to 180 degrees
+        # here we introduce an offset of 25 to the rotation axis
+        # when setting a position this is taken into account in the controller
+        # that way we just do tomography from 0 to 180 degrees
         if self.parent.axis_Id_numeric == 2 and self.controller.sock.port == 8083:
-            return (current_pos / step_mm)+25
+            return (current_pos / step_mm) + 25
         else:
             return current_pos / step_mm
 
     def read(self):
         self._metadata["timestamp"] = time.time()
         val = super().read()
-       
-        #if reading rotation stage angle
+
+        # if reading rotation stage angle
         if self.parent.axis_Id_numeric == 2 and self.controller.sock.port == 8083:
             current_readback_value = val[self.parent.name]["value"]
-            #print (f"previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}.")
+            # print (f"previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}.")
 
-            if np.fabs((self.previous_rotation_angle-current_readback_value)>10):
+            if np.fabs((self.previous_rotation_angle - current_readback_value) > 10):
                 message = f"Glitch detected in rotation stage. Previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}."
                 print(message)
-                self.parent.device_manager.connector.send_client_info(message, scope="glitch detector", show_asap=True)
-            
+                self.parent.device_manager.connector.send_client_info(
+                    message, scope="glitch detector", show_asap=True
+                )
+
             val = super().read()
             current_readback_value = val[self.parent.name]["value"]
 
-            if np.fabs((self.previous_rotation_angle-current_readback_value)>10):
+            if np.fabs((self.previous_rotation_angle - current_readback_value) > 10):
                 message = f"Glitch detected in rotation stage second read. Previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}. Disabling the controller."
                 print(message)
-                self.parent.device_manager.connector.send_client_info(message, scope="glitch detector", show_asap=True)
-            
-                self.parent.device_manager.devices["osamroy"].obj.controller.socket_put_confirmed("allaxref=0")
+                self.parent.device_manager.connector.send_client_info(
+                    message, scope="glitch detector", show_asap=True
+                )
+
+                self.parent.device_manager.devices["osamroy"].obj.controller.socket_put_confirmed(
+                    "allaxref=0"
+                )
                 self.parent.device_manager.devices["osamroy"].obj.enabled = False
 
                 return val
@@ -108,13 +114,12 @@ class OMNYGalilReadbackSignal(GalilSignalRO):
             try:
                 rt = self.parent.device_manager.devices["rtx"]
                 if rt.enabled:
-                    rt.obj.controller.set_rotation_angle(val[self.parent.name]["value"]-25+54)
+                    rt.obj.controller.set_rotation_angle(val[self.parent.name]["value"] - 25 + 54)
             except KeyError:
-                logger.warning("Failed to set RT value during ogalil readback.")        
+                logger.warning("Failed to set RT value during ogalil readback.")
         return val
 
 
-
 class OMNYGalilController(GalilController):
     USER_ACCESS = [
         "describe",
@@ -132,18 +137,18 @@ class OMNYGalilController(GalilController):
         "_ogalil_folerr_not_ignore",
     ]
 
-    OKBLUE = '\033[94m'
-    OKCYAN = '\033[96m'
-    OKGREEN = '\033[92m'
-    WARNING = '\033[93m'
-    FAIL = '\033[91m'
-    ENDC = '\033[0m'
-    
-    def on(self) -> None:
+    OKBLUE = "\033[94m"
+    OKCYAN = "\033[96m"
+    OKGREEN = "\033[92m"
+    WARNING = "\033[93m"
+    FAIL = "\033[91m"
+    ENDC = "\033[0m"
+
+    def on(self, timeout: int = 10) -> None:
         """Open a new socket connection to the controller"""
         self._ogalil_switchsocket_switch_all_on()
         time.sleep(0.3)
-        super().on()
+        super().on(timeout=timeout)
 
     def _ogalil_switchsocket(self, number: int, switch: bool):
         # number is socket number ranging from 1 to 4
@@ -185,15 +190,16 @@ class OMNYGalilController(GalilController):
         self.socket_put_confirmed("IgNoFol=1")
         self.socket_put_confirmed("XQ#STOP,1")
 
-
-    def _ogalil_set_axis_to_pos_wo_reference_search(self, axis_id_numeric, axis_id, pos_mm, motor_resolution, motor_sign):
+    def _ogalil_set_axis_to_pos_wo_reference_search(
+        self, axis_id_numeric, axis_id, pos_mm, motor_resolution, motor_sign
+    ):
 
         self.socket_put_confirmed("IgNoFol=1")
 
         # pos_mm = pos_encoder / motor_resolution
         pos_encoder = pos_mm * motor_resolution * motor_sign
-        #print(motor_resolution)
-    
+        # print(motor_resolution)
+
         self.socket_put_confirmed(f"DE{axis_id}={pos_encoder:.0f}")
         self.socket_put_confirmed(f"DP{axis_id}=_TP{axis_id}*ratio[{axis_id_numeric:.0f}]")
 
@@ -203,7 +209,6 @@ class OMNYGalilController(GalilController):
 
         self._ogalil_folerr_not_ignore()
 
-
     def _ogalil_folerr_not_ignore(self):
         self.socket_put_confirmed("IgNoFol=0")
 
@@ -240,7 +245,18 @@ class OMNYGalilController(GalilController):
 
 
 class OMNYGalilMotor(Device, PositionerBase):
-    USER_ACCESS = ["controller", "find_reference", "omny_osamx_to_scan_center", "drive_axis_to_limit", "_ogalil_folerr_reset_and_ignore", "_ogalil_set_axis_to_pos_wo_reference_search", "get_motor_limit_switch", "axis_is_referenced", "get_motor_temperature", "folerr_status"]
+    USER_ACCESS = [
+        "controller",
+        "find_reference",
+        "omny_osamx_to_scan_center",
+        "drive_axis_to_limit",
+        "_ogalil_folerr_reset_and_ignore",
+        "_ogalil_set_axis_to_pos_wo_reference_search",
+        "get_motor_limit_switch",
+        "axis_is_referenced",
+        "get_motor_temperature",
+        "folerr_status",
+    ]
     readback = Cpt(OMNYGalilReadbackSignal, signal_name="readback", kind="hinted")
     user_setpoint = Cpt(GalilSetpointSignal, signal_name="setpoint")
     motor_resolution = Cpt(GalilMotorResolution, signal_name="resolution", kind="config")
@@ -272,7 +288,7 @@ class OMNYGalilMotor(Device, PositionerBase):
         **kwargs,
     ):
         self.controller = OMNYGalilController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.axis_Id = axis_Id
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
@@ -308,6 +324,10 @@ class OMNYGalilMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())
@@ -433,8 +453,10 @@ class OMNYGalilMotor(Device, PositionerBase):
 
     def _ogalil_set_axis_to_pos_wo_reference_search(self, pos_mm):
         motor_resolution = self.motor_resolution.get()
-        self.controller._ogalil_set_axis_to_pos_wo_reference_search(self.axis_Id_numeric, self.axis_Id, pos_mm, motor_resolution, self.sign)
-        #now force position read to cache
+        self.controller._ogalil_set_axis_to_pos_wo_reference_search(
+            self.axis_Id_numeric, self.axis_Id, pos_mm, motor_resolution, self.sign
+        )
+        # now force position read to cache
         val = self.readback.read()
         self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
 
@@ -442,9 +464,9 @@ class OMNYGalilMotor(Device, PositionerBase):
         """
         Find the reference of the axis.
         """
-        verbose=1
+        verbose = 1
         self.controller.find_reference(self.axis_Id_numeric, verbose, raise_error)
-        #now force position read to cache
+        # now force position read to cache
         val = self.readback.read()
         self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
 
@@ -453,10 +475,10 @@ class OMNYGalilMotor(Device, PositionerBase):
         Drive an axis to the limit in a specified direction.
 
         Args:
-            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.        
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.
         """
         self.controller.drive_axis_to_limit(self.axis_Id_numeric, direction, verbose=1)
-        #now force position read to cache
+        # now force position read to cache
         val = self.readback.read()
         self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
 
@@ -487,29 +509,31 @@ class OMNYGalilMotor(Device, PositionerBase):
     def omny_osamx_to_scan_center(self, cenx):
         if self.controller.sock.port == 8082 and self.axis_Id_numeric == 0:
             # get last setpoint
-                osamx = self.device_manager.devices["osamx"]
-                osamx_current_setpoint = osamx.obj.readback.get()
-                omny_samx_in = self._get_user_param_safe("osamx","in")
-                if np.fabs(osamx_current_setpoint-(omny_samx_in+cenx/1000)) > 0.025:
-                    message=f"Moving osamx to scan center. new osamx target {omny_samx_in+cenx/1000:.3f}."
-                    logger.info(message)
+            osamx = self.device_manager.devices["osamx"]
+            osamx_current_setpoint = osamx.obj.readback.get()
+            omny_samx_in = self._get_user_param_safe("osamx", "in")
+            if np.fabs(osamx_current_setpoint - (omny_samx_in + cenx / 1000)) > 0.025:
+                message = (
+                    f"Moving osamx to scan center. new osamx target {omny_samx_in+cenx/1000:.3f}."
+                )
+                logger.info(message)
 
-                    osamx.read_only = False
-                    #osamx.controller.("osamx", "controller.socket_put_confirmed('axspeed[0]=1000')")
-                    osamx.set(omny_samx_in+cenx/1000)
-                    time.sleep(0.1)
-                    while(osamx.motor_is_moving.get()):
-                        time.sleep(0.05)
-                    osamx.read_only = True
-                    time.sleep(2)
-                    rt = self.device_manager.devices["rtx"]
-                    if rt.enabled:
-                        rt.obj.controller.laser_tracker_on()
-                        rt.obj.controller.laser_tracker_check_and_wait_for_signalstrength()
+                osamx.read_only = False
+                # osamx.controller.("osamx", "controller.socket_put_confirmed('axspeed[0]=1000')")
+                osamx.set(omny_samx_in + cenx / 1000)
+                time.sleep(0.1)
+                while osamx.motor_is_moving.get():
+                    time.sleep(0.05)
+                osamx.read_only = True
+                time.sleep(2)
+                rt = self.device_manager.devices["rtx"]
+                if rt.enabled:
+                    rt.obj.controller.laser_tracker_on()
+                    rt.obj.controller.laser_tracker_check_and_wait_for_signalstrength()
 
     def folerr_status(self) -> bool:
         return self.controller.folerr_status(self.axis_Id_numeric)
-    
+
     def stop(self, *, success=False):
         self.controller.stop_all_axes()
         return super().stop(success=success)

csaxs_bec/devices/omny/galil/sgalil_ophyd.py

@@ -52,33 +52,12 @@ class GalilController(Controller):
         "fly_grid_scan",
         "read_encoder_position",
     ]
+    _axes_per_controller = 8
 
-    def __init__(
-        self,
-        *,
-        name="GalilController",
-        kind=None,
-        parent=None,
-        socket=None,
-        attr_name="",
-        labels=None,
-    ):
-        if not hasattr(self, "_initialized") or not self._initialized:
-            self._galil_axis_per_controller = 8
-            self._axis = [None for axis_num in range(self._galil_axis_per_controller)]
-            super().__init__(
-                name=name,
-                socket=socket,
-                attr_name=attr_name,
-                parent=parent,
-                labels=labels,
-                kind=kind,
-            )
-
-    def on(self, controller_num=0) -> None:
+    def on(self, timeout: int = 10) -> None:
         """Open a new socket connection to the controller"""
         if not self.connected:
-            self.sock.open()
+            self.sock.open(timeout=timeout)
             self.connected = True
         else:
             logger.info("The connection has already been established.")
@@ -165,11 +144,11 @@ class GalilController(Controller):
     def show_running_threads(self) -> None:
         t = PrettyTable()
         t.title = f"Threads on {self.sock.host}:{self.sock.port}"
-        t.field_names = [str(ax) for ax in range(self._galil_axis_per_controller)]
+        t.field_names = [str(ax) for ax in range(self._axes_per_controller)]
         t.add_row(
             [
                 "active" if self.is_thread_active(t) else "inactive"
-                for t in range(self._galil_axis_per_controller)
+                for t in range(self._axes_per_controller)
             ]
         )
         print(t)
@@ -199,7 +178,7 @@ class GalilController(Controller):
             "Limits",
             "Position",
         ]
-        for ax in range(self._galil_axis_per_controller):
+        for ax in range(self._axes_per_controller):
             axis = self._axis[ax]
             if axis is not None:
                 t.add_row(
@@ -516,7 +495,9 @@ class SGalilMotor(Device, PositionerBase):
     ):
         self.axis_Id = axis_Id
         self.sign = sign
-        self.controller = GalilController(socket=socket_cls(host=host, port=port))
+        self.controller = GalilController(
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
+        )
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
         self.tolerance = kwargs.pop("tolerance", 0.5)
         self.device_mapping = kwargs.pop("device_mapping", {})
@@ -549,6 +530,10 @@ class SGalilMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())

csaxs_bec/devices/omny/rt/rt_flomni_ophyd.py

@@ -1,14 +1,16 @@
+from __future__ import annotations
+
 import threading
 import time
-from typing import List
+from typing import TYPE_CHECKING, Literal
 
 import numpy as np
-from bec_lib import bec_logger, messages
-from bec_lib.endpoints import MessageEndpoints
+from bec_lib.logger import bec_logger
 from ophyd import Component as Cpt
-from ophyd import Device, PositionerBase, Signal
+from ophyd import Device, DeviceStatus, PositionerBase, Signal
 from ophyd.status import wait as status_wait
 from ophyd.utils import LimitError
+from ophyd_devices.utils.bec_signals import AsyncMultiSignal, ProgressSignal
 from ophyd_devices.utils.controller import Controller, threadlocked
 from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
 from prettytable import PrettyTable
@@ -23,6 +25,9 @@ from csaxs_bec.devices.omny.rt.rt_ophyd import (
     retry_once,
 )
 
+if TYPE_CHECKING:
+    from bec_server.device_server.devices.devicemanager import DeviceManagerDS
+
 logger = bec_logger.logger
 
 
@@ -57,6 +62,7 @@ class RtFlomniController(Controller):
         socket_cls=None,
         socket_host=None,
         socket_port=None,
+        device_manager=None,
         attr_name="",
         parent=None,
         labels=None,
@@ -67,6 +73,7 @@ class RtFlomniController(Controller):
             socket_cls=socket_cls,
             socket_host=socket_host,
             socket_port=socket_port,
+            device_manager=device_manager,
             attr_name=attr_name,
             parent=parent,
             labels=labels,
@@ -167,10 +174,10 @@ class RtFlomniController(Controller):
         rtx = self.get_device_manager().devices.rtx
         rtx.update_user_parameter({"rt_pid_voltage": self.rt_pid_voltage})
 
-        self.set_device_enabled("fsamx", False)
-        self.set_device_enabled("fsamy", False)
-        self.set_device_enabled("foptx", False)
-        self.set_device_enabled("fopty", False)
+        self.set_device_read_write("fsamx", False)
+        self.set_device_read_write("fsamy", False)
+        self.set_device_read_write("foptx", False)
+        self.set_device_read_write("fopty", False)
 
     def move_samx_to_scan_region(self, fovx: float, cenx: float):
         time.sleep(0.05)
@@ -223,20 +230,20 @@ class RtFlomniController(Controller):
             print("Feedback is not running; likely an error in the interferometer.")
             raise RtError("Feedback is not running; likely an error in the interferometer.")
 
-        self.set_device_enabled("fsamx", False)
-        self.set_device_enabled("fsamy", False)
-        self.set_device_enabled("foptx", False)
-        self.set_device_enabled("fopty", False)
+        self.set_device_read_write("fsamx", False)
+        self.set_device_read_write("fsamy", False)
+        self.set_device_read_write("foptx", False)
+        self.set_device_read_write("fopty", False)
 
     def feedback_disable(self):
         self.clear_trajectory_generator()
         self.move_to_zero()
         self.socket_put("l0")
 
-        self.set_device_enabled("fsamx", True)
-        self.set_device_enabled("fsamy", True)
-        self.set_device_enabled("foptx", True)
-        self.set_device_enabled("fopty", True)
+        self.set_device_read_write("fsamx", True)
+        self.set_device_read_write("fsamy", True)
+        self.set_device_read_write("foptx", True)
+        self.set_device_read_write("fopty", True)
 
         fsamx = self.get_device_manager().devices.fsamx
         fsamx.obj.controller.socket_put_confirmed("axspeed[4]=025*stppermm[4]")
@@ -268,8 +275,7 @@ class RtFlomniController(Controller):
         self.laser_update_tracker_info()
         if self.tracker_info["enabled_z"] and self.tracker_info["enabled_y"]:
             return True
-        else:
-            return False
+        return False
 
     def laser_tracker_on(self):
         if not self.laser_tracker_check_enabled():
@@ -381,66 +387,61 @@ class RtFlomniController(Controller):
         val = float(self.socket_put_and_receive(f"j{axis_number}").strip())
         return val
 
-    def laser_tracker_check_signalstrength(self):
+    def laser_tracker_check_signalstrength(self) -> Literal["ok", "low", "toolow", "disabled"]:
+        """
+        Check the signal strength of the laser tracker interferometer.
+        Returns:
+            str: "ok" if signal is above low limit, "low" if signal is below low limit but above min limit,
+                 "toolow" if signal is below min limit, "disabled" if tracker is not enabled.
+        """
         if not self.laser_tracker_check_enabled():
-            returnval = "disabled"
-        else:
-            returnval = "ok"
-            self.laser_tracker_wait_on_target()
+            return "disabled"
 
-            signal = self.read_ssi_interferometer(1)
-            rtx = self.get_device_manager().devices.rtx
-            min_signal = rtx.user_parameter.get("min_signal")
-            low_signal = rtx.user_parameter.get("low_signal")
-            print(f"low signal: {low_signal}")
-            print(f"min signal: {min_signal}")
-            print(f"signal: {signal}")
+        returnval = "ok"
+        self.laser_tracker_wait_on_target()
+
+        signal = self.read_ssi_interferometer(1)
+        rtx = self.get_device_manager().devices.rtx
+        min_signal = rtx.user_parameter.get("min_signal")
+        low_signal = rtx.user_parameter.get("low_signal")
+        print(f"low signal: {low_signal}")
+        print(f"min signal: {min_signal}")
+        print(f"signal: {signal}")
+        if signal < min_signal:
+            time.sleep(1)
             if signal < min_signal:
-                time.sleep(1)
-                if signal < min_signal:
-                    print(
-                        f"\x1b[91mThe signal of the tracker {signal} is below the minimum required signal of {min_signal}. Readjustment requred!\x1b[0m"
-                    )
-                    returnval = "toolow"
-                    # raise RtError("The interferometer signal of tracker is too low.")
-            elif signal < low_signal:
                 print(
-                    f"\x1b[91mThe signal of the tracker {signal} is below the warning limit of {low_signal}. Readjustment recommended!\x1b[0m"
+                    f"\x1b[91mThe signal of the tracker {signal} is below the minimum required signal of {min_signal}. Readjustment requred!\x1b[0m"
                 )
-                returnval = "low"
+                returnval = "toolow"
+                # raise RtError("The interferometer signal of tracker is too low.")
+        elif signal < low_signal:
+            print(
+                f"\x1b[91mThe signal of the tracker {signal} is below the warning limit of {low_signal}. Readjustment recommended!\x1b[0m"
+            )
+            returnval = "low"
         return returnval
 
     def show_signal_strength_interferometer(self):
+        """
+        Show the signal strength of all four axes of the interferometer.
+        """
         t = PrettyTable()
-        t.title = f"Interferometer signal strength"
+        t.title = "Interferometer signal strength"
         t.field_names = ["Axis", "Value"]
         for i in range(4):
             t.add_row([i, self.read_ssi_interferometer(i)])
         print(t)
 
-    def _get_signals_from_table(self, return_table) -> dict:
-        self.average_stdeviations_x_st_fzp += float(return_table[4])
-        self.average_stdeviations_y_st_fzp += float(return_table[7])
-        signals = {
-            "target_x": {"value": float(return_table[2])},
-            "average_x_st_fzp": {"value": float(return_table[3])},
-            "stdev_x_st_fzp": {"value": float(return_table[4])},
-            "target_y": {"value": float(return_table[5])},
-            "average_y_st_fzp": {"value": float(return_table[6])},
-            "stdev_y_st_fzp": {"value": float(return_table[7])},
-            "average_rotz": {"value": float(return_table[8])},
-            "stdev_rotz": {"value": float(return_table[9])},
-            "average_stdeviations_x_st_fzp": {
-                "value": self.average_stdeviations_x_st_fzp / (int(return_table[0]) + 1)
-            },
-            "average_stdeviations_y_st_fzp": {
-                "value": self.average_stdeviations_y_st_fzp / (int(return_table[0]) + 1)
-            },
-        }
-        return signals
-
     @threadlocked
     def start_scan(self):
+        """
+        Start the scan. Before starting the scan, it is checked that the feedback loop is running.
+        Furthermore, it is checked that at least one target position is planned.
+
+        Raises:
+            RtError: Raised if feedback loop is not running or if no target positions are planned.
+        """
         if not self.feedback_is_running():
             logger.error(
                 "Cannot start scan because feedback loop is not running or there is an"
@@ -451,18 +452,23 @@ class RtFlomniController(Controller):
                 " interferometer error."
             )
             # here exception
-        (mode, number_of_positions_planned, current_position_in_scan) = self.get_scan_status()
+        (_mode, number_of_positions_planned, _current_position_in_scan) = self.get_scan_status()
 
         if number_of_positions_planned == 0:
             logger.error("Cannot start scan because no target positions are planned.")
             raise RtError("Cannot start scan because no target positions are planned.")
-            # hier exception
         # start a point-by-point scan (for cont scan in flomni it would be "sa")
         self.socket_put_and_receive("sd")
 
     @retry_once
     @threadlocked
-    def get_scan_status(self):
+    def get_scan_status(self) -> tuple[int, int, int]:
+        """
+        Get the current scan status of the controller.
+
+        Returns:
+            tuple: A tuple containing the mode, number of positions planned, and current position in scan.
+        """
         return_table = (self.socket_put_and_receive("sr")).split(",")
         if len(return_table) != 3:
             raise RtCommunicationError(
@@ -478,94 +484,15 @@ class RtFlomniController(Controller):
         current_position_in_scan = int(float(return_table[2]))
         return (mode, number_of_positions_planned, current_position_in_scan)
 
-    def get_device_manager(self):
+    def get_device_manager(self) -> DeviceManagerDS:
+        """
+        Helper function to get the device manager from one of the axes.
+        """
         for axis in self._axis:
-            if hasattr(axis, "device_manager") and axis.device_manager:
-                return axis.device_manager
+            if hasattr(axis, "device_manager") and axis.device_manager:  # type: ignore
+                return axis.device_manager  # type: ignore
         raise BECConfigError("Could not access the device_manager")
 
-    def read_positions_from_sampler(self):
-        # this was for reading after the scan completed
-        number_of_samples_to_read = 1  # self.get_scan_status()[1]  #number of valid samples, will be updated upon first data read
-
-        read_counter = 0
-
-        self.average_stdeviations_x_st_fzp = 0
-        self.average_stdeviations_y_st_fzp = 0
-        self.average_lamni_angle = 0
-
-        mode, number_of_positions_planned, current_position_in_scan = self.get_scan_status()
-
-        # if not (mode==2 or mode==3):
-        #    error
-        self.get_device_manager().connector.set(
-            MessageEndpoints.device_status("rt_scan"),
-            messages.DeviceStatusMessage(
-                device="rt_scan", status=1, metadata=self.readout_metadata
-            ),
-        )
-        # while scan is running
-        while mode > 0:
-            # logger.info(f"Current scan position {current_position_in_scan} out of {number_of_positions_planned}")
-            mode, number_of_positions_planned, current_position_in_scan = self.get_scan_status()
-            time.sleep(0.01)
-            if current_position_in_scan > 5:
-                while current_position_in_scan > read_counter + 1:
-                    return_table = (self.socket_put_and_receive(f"r{read_counter}")).split(",")
-                    # logger.info(f"{return_table}")
-                    logger.info(f"Read {read_counter} out of {number_of_positions_planned}")
-
-                    read_counter = read_counter + 1
-
-                    signals = self._get_signals_from_table(return_table)
-
-                    self.publish_device_data(signals=signals, point_id=int(return_table[0]))
-
-        time.sleep(0.05)
-
-        # read the last samples even though scan is finished already
-        while number_of_positions_planned > read_counter:
-            return_table = (self.socket_put_and_receive(f"r{read_counter}")).split(",")
-            logger.info(f"Read {read_counter} out of {number_of_positions_planned}")
-            # logger.info(f"{return_table}")
-            read_counter = read_counter + 1
-
-            signals = self._get_signals_from_table(return_table)
-            self.publish_device_data(signals=signals, point_id=int(return_table[0]))
-
-        self.get_device_manager().connector.set(
-            MessageEndpoints.device_status("rt_scan"),
-            messages.DeviceStatusMessage(
-                device="rt_scan", status=0, metadata=self.readout_metadata
-            ),
-        )
-
-        logger.info(
-            "Flomni statistics: Average of all standard deviations: x"
-            f" {self.average_stdeviations_x_st_fzp/read_counter*1000:.1f}, y"
-            f" {self.average_stdeviations_y_st_fzp/read_counter*1000:.1f}"
-        )
-
-    def publish_device_data(self, signals, point_id):
-        self.get_device_manager().connector.set_and_publish(
-            MessageEndpoints.device_read("rt_flomni"),
-            messages.DeviceMessage(
-                signals=signals, metadata={"point_id": point_id, **self.readout_metadata}
-            ),
-        )
-
-    def start_readout(self):
-        readout = threading.Thread(target=self.read_positions_from_sampler)
-        readout.start()
-
-    def kickoff(self, metadata):
-        self.readout_metadata = metadata
-        while not self._min_scan_buffer_reached:
-            time.sleep(0.001)
-        self.start_scan()
-        time.sleep(0.1)
-        self.start_readout()
-
 
 class RtFlomniReadbackSignal(RtReadbackSignal):
     @retry_once
@@ -658,7 +585,7 @@ class RtFlomniMotor(Device, PositionerBase):
         self.axis_Id = axis_Id
         self.sign = sign
         self.controller = RtFlomniController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
         self.device_manager = device_manager
@@ -686,6 +613,10 @@ class RtFlomniMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())
@@ -797,9 +728,6 @@ class RtFlomniMotor(Device, PositionerBase):
         else:
             raise TypeError(f"Expected value of type int but received {type(val)}")
 
-    def kickoff(self, metadata, **kwargs) -> None:
-        self.controller.kickoff(metadata)
-
     @property
     def egu(self):
         """The engineering units (EGU) for positions"""
@@ -811,9 +739,181 @@ class RtFlomniMotor(Device, PositionerBase):
         return super().stop(success=success)
 
 
+class RtFlomniFlyer(Device):
+    USER_ACCESS = ["controller"]
+    data = Cpt(
+        AsyncMultiSignal,
+        name="data",
+        signals=[
+            "target_x",
+            "average_x_st_fzp",
+            "stdev_x_st_fzp",
+            "target_y",
+            "average_y_st_fzp",
+            "stdev_y_st_fzp",
+            "average_rotz",
+            "stdev_rotz",
+            "average_stdeviations_x_st_fzp",
+            "average_stdeviations_y_st_fzp",
+        ],
+        ndim=0,
+        max_size=10000,
+        async_update={"type": "add", "max_shape": [None]},
+    )
+    progress = Cpt(ProgressSignal, name="progress")
+
+    def __init__(
+        self,
+        prefix="",
+        *,
+        name,
+        kind=None,
+        read_attrs=None,
+        configuration_attrs=None,
+        parent=None,
+        host="mpc2844.psi.ch",
+        port=2222,
+        socket_cls=SocketIO,
+        device_manager=None,
+        **kwargs,
+    ):
+        super().__init__(
+            prefix=prefix,
+            name=name,
+            kind=kind,
+            read_attrs=read_attrs,
+            configuration_attrs=configuration_attrs,
+            parent=parent,
+            **kwargs,
+        )
+        self.shutdown_event = threading.Event()
+        self.controller = RtFlomniController(
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
+        )
+        self.average_stdeviations_x_st_fzp = 0
+        self.average_stdeviations_y_st_fzp = 0
+        self.average_lamni_angle = 0
+
+    def read_positions_from_sampler(self, status: DeviceStatus):
+        """
+        Read the positions from the sampler and update the data signal.
+        This function runs in a separate thread and continuously checks the
+        scan status.
+
+        Args:
+            status (DeviceStatus): The status object to update when the readout is complete.
+        """
+        read_counter = 0
+        self.average_stdeviations_x_st_fzp = 0
+        self.average_stdeviations_y_st_fzp = 0
+        self.average_lamni_angle = 0
+
+        mode, number_of_positions_planned, current_position_in_scan = (
+            self.controller.get_scan_status()
+        )
+
+        # while scan is running
+        while mode > 0 and not self.shutdown_event.wait(0.01):
+            # logger.info(f"Current scan position {current_position_in_scan} out of {number_of_positions_planned}")
+            mode, number_of_positions_planned, current_position_in_scan = (
+                self.controller.get_scan_status()
+            )
+            if current_position_in_scan > 5:
+                while current_position_in_scan > read_counter + 1:
+                    return_table = (
+                        self.controller.socket_put_and_receive(f"r{read_counter}")
+                    ).split(",")
+                    logger.info(f"Read {read_counter} out of {number_of_positions_planned}")
+                    read_counter = read_counter + 1
+                    signals = self._get_signals_from_table(return_table)
+                    self.data.set(signals)
+                    self.progress.put(
+                        value=read_counter,
+                        max_value=number_of_positions_planned,
+                        done=(number_of_positions_planned == read_counter),
+                    )
+                    logger.info(f"Updating progress: {read_counter} / {number_of_positions_planned}")
+
+
+        if self.shutdown_event.wait(0.05):
+            logger.info("Shutdown event set, stopping readout.")
+            # if we are here, the shutdown_event is set. We can exit the readout loop.
+            status.set_finished()
+            return
+
+        # read the last samples even though scan is finished already
+        while number_of_positions_planned > read_counter and not self.shutdown_event.is_set():
+            return_table = (self.controller.socket_put_and_receive(f"r{read_counter}")).split(",")
+            logger.info(f"Read {read_counter} out of {number_of_positions_planned}")
+            read_counter = read_counter + 1
+
+            signals = self._get_signals_from_table(return_table)
+            logger.info(f"Setting data: {signals}")
+            self.data.set(signals)
+            self.progress.put(
+                value=read_counter,
+                max_value=number_of_positions_planned,
+                done=(number_of_positions_planned == read_counter),
+            )
+        logger.info(f"Updating progress: {read_counter} / {number_of_positions_planned}")
+
+
+        # NOTE: No need to set the status to failed if the shutdown_event is set.
+        # The stop() method will take care of that.
+        status.set_finished()
+
+        if read_counter != 0:
+            logger.info(
+                "Flomni statistics: Average of all standard deviations: x"
+                f" {self.average_stdeviations_x_st_fzp/read_counter*1000:.1f}, y"
+                f" {self.average_stdeviations_y_st_fzp/read_counter*1000:.1f}"
+            )
+
+
+    def _get_signals_from_table(self, return_table) -> dict:
+        self.average_stdeviations_x_st_fzp += float(return_table[4])
+        self.average_stdeviations_y_st_fzp += float(return_table[7])
+        signals = {
+            f"{self.name}_data_target_x": {"value": float(return_table[2])},
+            f"{self.name}_data_average_x_st_fzp": {"value": float(return_table[3])},
+            f"{self.name}_data_stdev_x_st_fzp": {"value": float(return_table[4])},
+            f"{self.name}_data_target_y": {"value": float(return_table[5])},
+            f"{self.name}_data_average_y_st_fzp": {"value": float(return_table[6])},
+            f"{self.name}_data_stdev_y_st_fzp": {"value": float(return_table[7])},
+            f"{self.name}_data_average_rotz": {"value": float(return_table[8])},
+            f"{self.name}_data_stdev_rotz": {"value": float(return_table[9])},
+            f"{self.name}_data_average_stdeviations_x_st_fzp": {
+                "value": self.average_stdeviations_x_st_fzp / (int(return_table[0]) + 1)
+            },
+            f"{self.name}_data_average_stdeviations_y_st_fzp": {
+                "value": self.average_stdeviations_y_st_fzp / (int(return_table[0]) + 1)
+            },
+        }
+        return signals
+
+    def start_readout(self, status: DeviceStatus):
+        logger.info("Starting readout thread.")
+        readout = threading.Thread(target=self.read_positions_from_sampler, args=(status,))
+        readout.start()
+
+    def kickoff(self) -> DeviceStatus:
+        self.shutdown_event.clear()
+        while not self.controller._min_scan_buffer_reached and not self.shutdown_event.wait(0.001):
+            ...
+        self.controller.start_scan()
+        self.shutdown_event.wait(0.1)
+        status = DeviceStatus(self)
+        self.start_readout(status)
+        return status
+
+    def stop(self, *, success=False):
+        self.shutdown_event.set()
+        return super().stop(success=success)
+
+
 if __name__ == "__main__":
     rtcontroller = RtFlomniController(
-        socket_cls=SocketIO, socket_host="mpc2844.psi.ch", socket_port=2222
+        socket_cls=SocketIO, socket_host="mpc2844.psi.ch", socket_port=2222, device_manager=None
     )
     rtcontroller.on()
     rtcontroller.laser_tracker_on()

csaxs_bec/devices/omny/rt/rt_lamni_ophyd.py

@@ -71,6 +71,7 @@ class RtLamniController(Controller):
         socket_cls=None,
         socket_host=None,
         socket_port=None,
+        device_manager=None,
         attr_name="",
         parent=None,
         labels=None,
@@ -81,6 +82,7 @@ class RtLamniController(Controller):
             socket_cls=socket_cls,
             socket_host=socket_host,
             socket_port=socket_port,
+            device_manager=device_manager,
             attr_name=attr_name,
             parent=parent,
             labels=labels,
@@ -92,11 +94,11 @@ class RtLamniController(Controller):
     def feedback_disable(self):
         self.socket_put("J0")
         logger.info("LamNI Feedback disabled.")
-        self.set_device_enabled("lsamx", True)
-        self.set_device_enabled("lsamy", True)
-        self.set_device_enabled("loptx", True)
-        self.set_device_enabled("lopty", True)
-        self.set_device_enabled("loptz", True)
+        self.set_device_read_write("lsamx", True)
+        self.set_device_read_write("lsamy", True)
+        self.set_device_read_write("loptx", True)
+        self.set_device_read_write("lopty", True)
+        self.set_device_read_write("loptz", True)
 
     def is_axis_moving(self, axis_Id) -> bool:
         # this checks that axis is on target
@@ -150,25 +152,25 @@ class RtLamniController(Controller):
         # set these as closed loop target position
         self.socket_put(f"pa0,{x_curr:.4f}")
         self.socket_put(f"pa1,{y_curr:.4f}")
-        self.get_device_manager().devices.rtx.obj.user_setpoint.set_with_feedback_disabled(x_curr)
-        self.get_device_manager().devices.rty.obj.user_setpoint.set_with_feedback_disabled(y_curr)
+        self.dm.devices.rtx.obj.user_setpoint.set_with_feedback_disabled(x_curr)
+        self.dm.devices.rty.obj.user_setpoint.set_with_feedback_disabled(y_curr)
         self.socket_put("J5")
         logger.info("LamNI Feedback enabled (without reset).")
-        self.set_device_enabled("lsamx", False)
-        self.set_device_enabled("lsamy", False)
-        self.set_device_enabled("loptx", False)
-        self.set_device_enabled("lopty", False)
-        self.set_device_enabled("loptz", False)
+        self.set_device_read_write("lsamx", False)
+        self.set_device_read_write("lsamy", False)
+        self.set_device_read_write("loptx", False)
+        self.set_device_read_write("lopty", False)
+        self.set_device_read_write("loptz", False)
 
     @threadlocked
     def feedback_disable_and_even_reset_lamni_angle_interferometer(self):
         self.socket_put("J6")
         logger.info("LamNI Feedback disabled including the angular interferometer.")
-        self.set_device_enabled("lsamx", True)
-        self.set_device_enabled("lsamy", True)
-        self.set_device_enabled("loptx", True)
-        self.set_device_enabled("lopty", True)
-        self.set_device_enabled("loptz", True)
+        self.set_device_read_write("lsamx", True)
+        self.set_device_read_write("lsamy", True)
+        self.set_device_read_write("loptx", True)
+        self.set_device_read_write("lopty", True)
+        self.set_device_read_write("loptz", True)
 
     @threadlocked
     def clear_trajectory_generator(self):
@@ -405,11 +407,11 @@ class RtLamniController(Controller):
                 (self.socket_put_and_receive("J2")).split(",")[0]
             )
 
-        self.set_device_enabled("lsamx", False)
-        self.set_device_enabled("lsamy", False)
-        self.set_device_enabled("loptx", False)
-        self.set_device_enabled("lopty", False)
-        self.set_device_enabled("loptz", False)
+        self.set_device_read_write("lsamx", False)
+        self.set_device_read_write("lsamy", False)
+        self.set_device_read_write("loptx", False)
+        self.set_device_read_write("lopty", False)
+        self.set_device_read_write("loptz", False)
 
         if interferometer_feedback_not_running == 1:
             logger.error(
@@ -559,7 +561,7 @@ class RtLamniMotor(Device, PositionerBase):
         self.axis_Id = axis_Id
         self.sign = sign
         self.controller = RtLamniController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
         self.device_manager = device_manager
@@ -586,6 +588,10 @@ class RtLamniMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())

csaxs_bec/devices/omny/rt/rt_omny_ophyd.py

@@ -1,8 +1,8 @@
+import builtins
+import socket
 import threading
 import time
 from typing import List
-import builtins
-import socket
 
 import numpy as np
 from bec_lib import bec_logger, messages
@@ -34,12 +34,15 @@ from csaxs_bec.devices.omny.rt.rt_ophyd import (
 
 logger = bec_logger.logger
 
+
 class RtOMNY_mirror_switchbox_Error(Exception):
     pass
 
+
 class RtOMNY_Error(Exception):
     pass
 
+
 class RtOMNYController(Controller):
     _axes_per_controller = 3
     red = "\x1b[91m"
@@ -87,6 +90,7 @@ class RtOMNYController(Controller):
         socket_cls=None,
         socket_host=None,
         socket_port=None,
+        device_manager=None,
         attr_name="",
         parent=None,
         labels=None,
@@ -97,6 +101,7 @@ class RtOMNYController(Controller):
             socket_cls=socket_cls,
             socket_host=socket_host,
             socket_port=socket_port,
+            device_manager=device_manager,
             attr_name=attr_name,
             parent=parent,
             labels=labels,
@@ -234,7 +239,7 @@ class RtOMNYController(Controller):
                 "opt_amplitude1_neg": 3000,
                 "opt_amplitude2_pos": 3000,
                 "opt_amplitude2_neg": 3000,
-            }
+            },
         }
 
     # def is_axis_moving(self, axis_Id) -> bool:
@@ -261,42 +266,60 @@ class RtOMNYController(Controller):
 
         threading.Thread(target=send_positions, args=(self, positions), daemon=True).start()
 
-    def get_mirror_parameters(self,channel):
+    def get_mirror_parameters(self, channel):
         return self.mirror_parameters[channel]
-    
 
     def laser_tracker_check_and_wait_for_signalstrength(self):
-        self.get_device_manager().connector.send_client_info("Checking laser tracker...", scope="", show_asap=True)
+        self.get_device_manager().connector.send_client_info(
+            "Checking laser tracker...", scope="", show_asap=True
+        )
         if not self.laser_tracker_check_enabled():
-            print("laser_tracker_check_and_wait_for_signalstrength: The laser tracker is not even enabled.")
+            print(
+                "laser_tracker_check_and_wait_for_signalstrength: The laser tracker is not even enabled."
+            )
             return
-        #first check on target
+        # first check on target
         self.laser_tracker_wait_on_target()
-        #when on target, check interferometer signal
-        signal = self._omny_interferometer_get_signalsample("ssi_4",0.1)
+        # when on target, check interferometer signal
+        signal = self._omny_interferometer_get_signalsample("ssi_4", 0.1)
         rtx = self.get_device_manager().devices.rtx
         min_signal = rtx.user_parameter.get("min_signal")
         low_signal = rtx.user_parameter.get("low_signal")
         wait_counter = 0
-        while signal < min_signal and wait_counter<10:
-            self.get_device_manager().connector.send_client_info(f"The signal of the tracker {signal} is below the minimum required signal of {min_signal}. Waiting...", scope="laser_tracker_check_and_wait_for_signalstrength", show_asap=True)
+        while signal < min_signal and wait_counter < 10:
+            self.get_device_manager().connector.send_client_info(
+                f"The signal of the tracker {signal} is below the minimum required signal of {min_signal}. Waiting...",
+                scope="laser_tracker_check_and_wait_for_signalstrength",
+                show_asap=True,
+            )
 
-            wait_counter+=1
+            wait_counter += 1
             time.sleep(0.2)
-            signal = self._omny_interferometer_get_signalsample("ssi_4",0.1)
+            signal = self._omny_interferometer_get_signalsample("ssi_4", 0.1)
 
         if signal < low_signal:
-            self.get_device_manager().connector.send_client_info(f"\x1b[91mThe signal of the tracker {signal} is below the low limit of {low_signal}. Auto readjustment...\x1b[0m", scope="laser_tracker_check_and_wait_for_signalstrength", show_asap=True)
+            self.get_device_manager().connector.send_client_info(
+                f"\x1b[91mThe signal of the tracker {signal} is below the low limit of {low_signal}. Auto readjustment...\x1b[0m",
+                scope="laser_tracker_check_and_wait_for_signalstrength",
+                show_asap=True,
+            )
 
-            self.omny_interferometer_align_tracking() 
-        self.get_device_manager().connector.send_client_info("Checking laser tracker completed.", scope="", show_asap=True)
+            self.omny_interferometer_align_tracking()
+        self.get_device_manager().connector.send_client_info(
+            "Checking laser tracker completed.", scope="", show_asap=True
+        )
 
     def omny_interferometer_align_tracking(self):
-        mirror_channel=6
-        signal = self._omny_interferometer_get_signalsample(self.mirror_parameters[mirror_channel]["opt_signalchannel"], self.mirror_parameters[mirror_channel]["opt_averaging_time"])
+        mirror_channel = 6
+        signal = self._omny_interferometer_get_signalsample(
+            self.mirror_parameters[mirror_channel]["opt_signalchannel"],
+            self.mirror_parameters[mirror_channel]["opt_averaging_time"],
+        )
 
         if signal > self.mirror_parameters[mirror_channel]["opt_signal_stop"]:
-            print(f"Interferometer signal of axis {self.mirror_parameters[mirror_channel]['opt_mirrorname']} is good, no alignment needed.")
+            print(
+                f"Interferometer signal of axis {self.mirror_parameters[mirror_channel]['opt_mirrorname']} is good, no alignment needed."
+            )
         else:
             self._omny_interferometer_switch_channel(mirror_channel)
             time.sleep(0.1)
@@ -307,16 +330,19 @@ class RtOMNYController(Controller):
             self._omny_interferometer_switch_alloff()
             self.show_signal_strength_interferometer()
 
-        mirror_channel=-1
-
-
+        mirror_channel = -1
 
     def omny_interferometer_align_incoupling_angle(self):
-        mirror_channel=1
-        signal = self._omny_interferometer_get_signalsample(self.mirror_parameters[mirror_channel]["opt_signalchannel"], self.mirror_parameters[mirror_channel]["opt_averaging_time"])
+        mirror_channel = 1
+        signal = self._omny_interferometer_get_signalsample(
+            self.mirror_parameters[mirror_channel]["opt_signalchannel"],
+            self.mirror_parameters[mirror_channel]["opt_averaging_time"],
+        )
 
         if signal > self.mirror_parameters[mirror_channel]["opt_signal_stop"]:
-            print(f"Interferometer signal of axis {self.mirror_parameters[mirror_channel]['opt_mirrorname']} is good, no alignment needed.")
+            print(
+                f"Interferometer signal of axis {self.mirror_parameters[mirror_channel]['opt_mirrorname']} is good, no alignment needed."
+            )
         else:
             self._omny_interferometer_switch_channel(mirror_channel)
             time.sleep(0.1)
@@ -327,18 +353,17 @@ class RtOMNYController(Controller):
             self._omny_interferometer_switch_alloff()
             self.show_signal_strength_interferometer()
 
-        mirror_channel=-1
-
+        mirror_channel = -1
 
     def _omny_interferometer_openloop_steps(self, channel, steps, amplitude):
-        if channel not in range(3,5):
+        if channel not in range(3, 5):
             raise RtOMNY_Error(f"invalid channel number {channel}.")
 
         if amplitude > 4090:
             amplitude = 4090
         elif amplitude < 10:
             amplitude = 10
-            
+
         oshield = self.get_device_manager().devices.oshield
 
         oshield.obj.controller.move_open_loop_steps(
@@ -351,7 +376,7 @@ class RtOMNYController(Controller):
     def _omny_interferometer_optimize(self, mirror_channel, channel):
         if mirror_channel == -1:
             raise RtOMNY_Error("no mirror channel selected")
-        #mirror channel is mirror number and channel is smaract channel, i.e. axis of the mirror
+        # mirror channel is mirror number and channel is smaract channel, i.e. axis of the mirror
         if channel == 3:
             steps_pos = self.mirror_parameters[mirror_channel]["opt_steps1_pos"]
             steps_neg = self.mirror_parameters[mirror_channel]["opt_steps1_neg"]
@@ -365,67 +390,80 @@ class RtOMNYController(Controller):
         else:
             raise RtOMNY_Error(f"invalid channel number {channel}.")
 
-        previous_signal = self._omny_interferometer_get_signalsample(self.mirror_parameters[mirror_channel]["opt_signalchannel"], self.mirror_parameters[mirror_channel]["opt_averaging_time"])
+        previous_signal = self._omny_interferometer_get_signalsample(
+            self.mirror_parameters[mirror_channel]["opt_signalchannel"],
+            self.mirror_parameters[mirror_channel]["opt_averaging_time"],
+        )
 
-        min_begin =  self.mirror_parameters[mirror_channel]["opt_signal_min_begin"]
+        min_begin = self.mirror_parameters[mirror_channel]["opt_signal_min_begin"]
         if previous_signal < min_begin:
-            #raise OMNY_rt_clientError("error1") #(f"Minimum signal of axis {self.mirror_parameters[mirror_channel]["opt_mirrorname"]} to start alignment not present.")
+            # raise OMNY_rt_clientError("error1") #(f"Minimum signal of axis {self.mirror_parameters[mirror_channel]["opt_mirrorname"]} to start alignment not present.")
             print(f"\rMinimum signal for auto alignment {min_begin} not reached.")
             return
         elif previous_signal > self.mirror_parameters[mirror_channel]["opt_signal_stop"]:
-             print(f"\rInterferometer signal of axis is good")  # {self.mirror_parameters[mirror_channel]["opt_mirrorname"]} is good.")
-             return
+            print(
+                f"\rInterferometer signal of axis is good"
+            )  # {self.mirror_parameters[mirror_channel]["opt_mirrorname"]} is good.")
+            return
         else:
             direction = 1
-            cycle_counter=0
-            cycle_max=20
-            reversal_counter=0
-            reversal_max=4
-            self.mirror_amplitutde_increase=0
+            cycle_counter = 0
+            cycle_max = 20
+            reversal_counter = 0
+            reversal_max = 4
+            self.mirror_amplitutde_increase = 0
 
-        current_sample = self._omny_interferometer_get_signalsample(self.mirror_parameters[mirror_channel]["opt_signalchannel"], self.mirror_parameters[mirror_channel]["opt_averaging_time"])
-        max=current_sample
+        current_sample = self._omny_interferometer_get_signalsample(
+            self.mirror_parameters[mirror_channel]["opt_signalchannel"],
+            self.mirror_parameters[mirror_channel]["opt_averaging_time"],
+        )
+        max = current_sample
 
-        while current_sample < self.mirror_parameters[mirror_channel]["opt_signal_stop"] and cycle_counter<cycle_max and reversal_counter < reversal_max:
+        while (
+            current_sample < self.mirror_parameters[mirror_channel]["opt_signal_stop"]
+            and cycle_counter < cycle_max
+            and reversal_counter < reversal_max
+        ):
             # if current_sample < self.mirror_parameters[mirror_channel]["opt_signal_min_begin"]:
             #     raise OMNY_rt_clientError("error2") #(f"Minimum signal of axis {self.mirror_parameters[mirror_channel]["opt_mirrorname"]} to start alignment not present.")
 
-            if direction>0:
+            if direction > 0:
                 self._omny_interferometer_openloop_steps(channel, steps_pos, opt_amplitude_pos)
                 verbose_str = f"channel {channel}, steps {steps_pos}"
             else:
                 self._omny_interferometer_openloop_steps(channel, -steps_neg, opt_amplitude_neg)
                 verbose_str = f"auto action {channel}, steps {-steps_pos}"
-            #print(f"Aligning axis ")   #{self.mirror_parameters[mirror_channel]["opt_mirrorname"]}. Target: {self.mirror_parameters[mirror_channel]["opt_signal_stop"]}, current {current_sample}")
+            # print(f"Aligning axis ")   #{self.mirror_parameters[mirror_channel]["opt_mirrorname"]}. Target: {self.mirror_parameters[mirror_channel]["opt_signal_stop"]}, current {current_sample}")
 
-            current_sample = self._omny_interferometer_get_signalsample(self.mirror_parameters[mirror_channel]["opt_signalchannel"], self.mirror_parameters[mirror_channel]["opt_averaging_time"])
+            current_sample = self._omny_interferometer_get_signalsample(
+                self.mirror_parameters[mirror_channel]["opt_signalchannel"],
+                self.mirror_parameters[mirror_channel]["opt_averaging_time"],
+            )
 
             opt_mirrorname = self.mirror_parameters[mirror_channel]["opt_mirrorname"]
 
             info_str = f"\rAuto aligning Channel {mirror_channel}, {opt_mirrorname}, Current signal: {current_sample:.0f}"
-            message=info_str +"   (q)uit   \r"
-            self.get_device_manager().connector.send_client_info(message, scope="_omny_interferometer_optimize", show_asap=True)
-
-
-
-            if previous_signal>current_sample:
-                if direction<0:
-                    steps_pos=int(steps_pos/2)
-                    steps_neg=int(steps_neg/2)
-                    if steps_pos<1:
-                        steps_pos=1
-                    if steps_neg<1:
-                        steps_neg=1 	
-                direction=direction*(-1)
-                reversal_counter+=1
-            previous_signal=current_sample
-            cycle_counter+=1
-        
-        print(f"\r\nFinished aligning channel {channel} of mirror {mirror_channel}\n\r")  # {self.mirror_parameters[mirror_channel]["opt_mirrorname"]}.  Target: {self.mirror_parameters[mirror_channel]["opt_signal_stop"]}, current {current_sample}")        
-
-
+            message = info_str + "   (q)uit   \r"
+            self.get_device_manager().connector.send_client_info(
+                message, scope="_omny_interferometer_optimize", show_asap=True
+            )
 
+            if previous_signal > current_sample:
+                if direction < 0:
+                    steps_pos = int(steps_pos / 2)
+                    steps_neg = int(steps_neg / 2)
+                    if steps_pos < 1:
+                        steps_pos = 1
+                    if steps_neg < 1:
+                        steps_neg = 1
+                direction = direction * (-1)
+                reversal_counter += 1
+            previous_signal = current_sample
+            cycle_counter += 1
 
+        print(
+            f"\r\nFinished aligning channel {channel} of mirror {mirror_channel}\n\r"
+        )  # {self.mirror_parameters[mirror_channel]["opt_mirrorname"]}.  Target: {self.mirror_parameters[mirror_channel]["opt_signal_stop"]}, current {current_sample}")
 
     def move_to_zero(self):
         self.socket_put("pa0,0")
@@ -457,7 +495,7 @@ class RtOMNYController(Controller):
         if ret == 1:
             return True
         return False
-    
+
     def feedback_is_running(self) -> bool:
         self.feedback_get_status_and_ssi()
         interferometer_feedback_not_running = int(self.ssi["feedback_error"])
@@ -466,7 +504,9 @@ class RtOMNYController(Controller):
         return True
 
     def feedback_enable_with_reset(self):
-        self.get_device_manager().connector.send_client_info(f"Enabling the feedback...", scope="", show_asap=True)
+        self.get_device_manager().connector.send_client_info(
+            f"Enabling the feedback...", scope="", show_asap=True
+        )
 
         self.socket_put("J0")  # disable feedback
         time.sleep(0.01)
@@ -488,8 +528,10 @@ class RtOMNYController(Controller):
         osamroy = self.get_device_manager().devices.osamroy
         # the following read will also upate the angle in rt during readout
         readback = osamroy.obj.readback.get()
-        if (np.fabs(readback) > 0.1):
-            self.get_device_manager().connector.send_client_info(f"Rotating to zero", scope="feedback enable", show_asap=True)
+        if np.fabs(readback) > 0.1:
+            self.get_device_manager().connector.send_client_info(
+                f"Rotating to zero", scope="feedback enable", show_asap=True
+            )
             osamroy.obj.move(0, wait=True)
 
         osamx = self.get_device_manager().devices.osamx
@@ -514,16 +556,15 @@ class RtOMNYController(Controller):
 
         time.sleep(1.5)
 
-        self.set_device_enabled("osamx", False)
-        self.set_device_enabled("osamy", False)
-        self.set_device_enabled("ofzpx", False)
-        self.set_device_enabled("ofzpy", False)
-        self.set_device_enabled("oosax", False)
-        self.set_device_enabled("oosax", False)
+        self.set_device_read_write("osamx", False)
+        self.set_device_read_write("osamy", False)
+        self.set_device_read_write("ofzpx", False)
+        self.set_device_read_write("ofzpy", False)
+        self.set_device_read_write("oosax", False)
+        self.set_device_read_write("oosax", False)
 
         print("Feedback is running.")
 
-
     @threadlocked
     def clear_trajectory_generator(self):
         self.socket_put("sc")
@@ -534,16 +575,15 @@ class RtOMNYController(Controller):
         self.move_to_zero()
         self.socket_put("J0")
 
-        self.set_device_enabled("osamx", True)
-        self.set_device_enabled("osamy", True)
-        self.set_device_enabled("ofzpx", True)
-        self.set_device_enabled("ofzpy", True)
-        self.set_device_enabled("oosax", True)
-        self.set_device_enabled("oosax", True)
+        self.set_device_read_write("osamx", True)
+        self.set_device_read_write("osamy", True)
+        self.set_device_read_write("ofzpx", True)
+        self.set_device_read_write("ofzpy", True)
+        self.set_device_read_write("oosax", True)
+        self.set_device_read_write("oosax", True)
 
         print("rt feedback is now disabled.")
 
-
     def set_rotation_angle(self, val: float) -> None:
         self.socket_put(f"a{val/180*np.pi}")
 
@@ -578,12 +618,13 @@ class RtOMNYController(Controller):
             "enabled_z": bool(tracker_values[10]),
         }
 
-
     def laser_tracker_on(self):
-        #update variables and enable if not yet active
+        # update variables and enable if not yet active
         if not self.laser_tracker_check_enabled():
             logger.info("Enabling the laser tracker. Please wait...")
-            self.get_device_manager().connector.send_client_info(f"Enabling the laser tracker. Please wait...", scope="", show_asap=True)
+            self.get_device_manager().connector.send_client_info(
+                f"Enabling the laser tracker. Please wait...", scope="", show_asap=True
+            )
 
             tracker_intensity = self.tracker_info["tracker_intensity"]
             if (
@@ -609,7 +650,6 @@ class RtOMNYController(Controller):
         logger.info("Laser tracker running!")
         print("Laser tracker running!")
 
-
     def laser_tracker_check_enabled(self) -> bool:
         self.laser_update_tracker_info()
         if self.tracker_info["enabled_z"] and self.tracker_info["enabled_y"]:
@@ -628,11 +668,10 @@ class RtOMNYController(Controller):
             return True
         return False
 
-
     def laser_tracker_wait_on_target(self):
         max_repeat = 15
         count = 0
-        while not self.laser_tracker_check_on_target() and count<max_repeat:
+        while not self.laser_tracker_check_on_target() and count < max_repeat:
             logger.info("Waiting for laser tracker to reach target position.")
             time.sleep(0.5)
             count += 1
@@ -641,75 +680,74 @@ class RtOMNYController(Controller):
                 raise RtError("Failed to reach laser target position.")
 
     def laser_tracker_print_intensity_for_otrack_tweaking(self):
-        #self.laser_update_tracker_info()
-        #_laser_tracker_intensity = self.tracker_info["tracker_intensity"]
-        #print(f"\r PSD beam intensity:      {_laser_tracker_intensity:.2f}\r")
+        # self.laser_update_tracker_info()
+        # _laser_tracker_intensity = self.tracker_info["tracker_intensity"]
+        # print(f"\r PSD beam intensity:      {_laser_tracker_intensity:.2f}\r")
         self.laser_tracker_show_all(extra_endline="\r")
 
-    def laser_tracker_show_all(self,extra_endline=""):
+    def laser_tracker_show_all(self, extra_endline=""):
         self.laser_update_tracker_info()
         enabled_y = self.tracker_info["enabled_y"]
-        print(extra_endline+f"Tracker enabled:          {bool(enabled_y)}"+extra_endline)
+        print(extra_endline + f"Tracker enabled:          {bool(enabled_y)}" + extra_endline)
         if self.tracker_info["tracker_intensity"] < self.tracker_info["threshold_intensity_y"]:
-            print(self.red+" LOW INTENSITY"+self.white+extra_endline)
+            print(self.red + " LOW INTENSITY" + self.white + extra_endline)
         _laser_tracker_intensity = self.tracker_info["tracker_intensity"]
-        print(f" PSD beam intensity:      {_laser_tracker_intensity:.2f}"+extra_endline)
+        print(f" PSD beam intensity:      {_laser_tracker_intensity:.2f}" + extra_endline)
         _laser_tracker_y_beampos = self.tracker_info["beampos_y"]
-        print(f" Y beam position:         {_laser_tracker_y_beampos:.2f}"+extra_endline)
+        print(f" Y beam position:         {_laser_tracker_y_beampos:.2f}" + extra_endline)
         _laser_tracker_y_target = self.tracker_info["target_y"]
-        print(f"   target position:       {_laser_tracker_y_target:.2f}"+extra_endline)
+        print(f"   target position:       {_laser_tracker_y_target:.2f}" + extra_endline)
         _laser_tracker_y_threshold_intensity = self.tracker_info["threshold_intensity_y"]
-        print(f"   threshold intensity:   {_laser_tracker_y_threshold_intensity:.2f}"+extra_endline)
+        print(
+            f"   threshold intensity:   {_laser_tracker_y_threshold_intensity:.2f}" + extra_endline
+        )
         _laser_tracker_y_piezo_voltage = self.tracker_info["piezo_voltage_y"]
-        print(f"   Piezo voltage:         {_laser_tracker_y_piezo_voltage:.2f}"+extra_endline)
+        print(f"   Piezo voltage:         {_laser_tracker_y_piezo_voltage:.2f}" + extra_endline)
         _laser_tracker_z_beampos = self.tracker_info["beampos_z"]
-        print(f" Z beam position:         {_laser_tracker_z_beampos:.2f}"+extra_endline)
+        print(f" Z beam position:         {_laser_tracker_z_beampos:.2f}" + extra_endline)
         _laser_tracker_z_target = self.tracker_info["target_z"]
-        print(f"   target position:       {_laser_tracker_z_target:.2f}"+extra_endline)
+        print(f"   target position:       {_laser_tracker_z_target:.2f}" + extra_endline)
         _laser_tracker_z_threshold_intensity = self.tracker_info["threshold_intensity_z"]
-        print(f"   threshold intensity:   {_laser_tracker_z_threshold_intensity:.2f}"+extra_endline)
+        print(
+            f"   threshold intensity:   {_laser_tracker_z_threshold_intensity:.2f}" + extra_endline
+        )
         _laser_tracker_z_piezo_voltage = self.tracker_info["piezo_voltage_z"]
-        print(f"   Piezo voltage:         {_laser_tracker_z_piezo_voltage:.2f}"+extra_endline)
-        print(" Reminder - there is also an upper threshold active in rt\n"+extra_endline)
+        print(f"   Piezo voltage:         {_laser_tracker_z_piezo_voltage:.2f}" + extra_endline)
+        print(" Reminder - there is also an upper threshold active in rt\n" + extra_endline)
         if extra_endline == "":
             self.laser_tracker_galil_status()
 
-
-
     def laser_tracker_galil_enable(self):
         otracky_con = self.get_device_manager().devices.otracky.obj.controller
         otracky_con.socket_put_confirmed("tracken=1")
         otracky_con.socket_put_confirmed("trackyct=0")
         otracky_con.socket_put_confirmed("trackzct=0")
 
-
-
     def laser_tracker_galil_disable(self):
         otracky_con = self.get_device_manager().devices.otracky.obj.controller
         otracky_con.socket_put_confirmed("tracken=0")
 
-
     def laser_tracker_galil_status(self):
         otracky_con = self.get_device_manager().devices.otracky.obj.controller
         if bool(float(otracky_con.socket_put_and_receive("MGtracken").strip())) == 0:
-            print(self.red+"Tracking in the Galil Controller is disabled."+self.white)
+            print(self.red + "Tracking in the Galil Controller is disabled." + self.white)
             print("Use dev.rtx.controller.laser_tracker_galil_enable to enable.\n")
-            return(0)
+            return 0
         else:
             print("Tracking in the Galil Controller is enabled.")
-            trackyct=int(float(otracky_con.socket_put_and_receive("MGtrackyct").strip()))
-            trackzct=int(float(otracky_con.socket_put_and_receive("MGtrackzct").strip()))
+            trackyct = int(float(otracky_con.socket_put_and_receive("MGtrackyct").strip()))
+            trackzct = int(float(otracky_con.socket_put_and_receive("MGtrackzct").strip()))
             print(f"Galil Trackcounters y={trackyct}, z={trackzct}")
 
     def show_signal_strength_interferometer(self):
-        channelnames={1:"OSA FZP Y",2:"ST OSA Y",3:"OSA FZP X",4:"ST OSA X",5:"Angle"}
+        channelnames = {1: "OSA FZP Y", 2: "ST OSA Y", 3: "OSA FZP X", 4: "ST OSA X", 5: "Angle"}
         self.feedback_get_status_and_ssi()
         t = PrettyTable()
         t.title = f"Interferometer signal strength"
         t.field_names = ["Channel", "Name", "Value"]
-        for i in range(1,6):
+        for i in range(1, 6):
             ssi = self.ssi[f"ssi_{i}"]
-            t.add_row([i,channelnames[i], ssi])
+            t.add_row([i, channelnames[i], ssi])
         print(t)
 
     def _omny_interferometer_switch_open_socket(self):
@@ -722,44 +760,42 @@ class RtOMNYController(Controller):
         self._omny_interferometer_switch_put_and_receive("?000\r")
         time.sleep(1)
 
-
-
     def _omny_interferometer_switch_channel(self, channel):
         self._omny_interferometer_switch_alloff()
         time.sleep(0.1)
-        if channel == 1: #Relais 1 and 2
+        if channel == 1:  # Relais 1 and 2
             rback = self._omny_interferometer_switch_put_and_receive("!0020003\r")
-            #if "|0003\r" != self._omny_interferometer_switch_put_and_receive("!0020003\r"):
+            # if "|0003\r" != self._omny_interferometer_switch_put_and_receive("!0020003\r"):
             #    raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 2: #Relais 3 and 4
+        elif channel == 2:  # Relais 3 and 4
             rback = self._omny_interferometer_switch_put_and_receive("!002000C\r")
             # if "|000C\r" != self._omny_interferometer_switch_put_and_receive("!002000C\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 3: #Relais 5 and 6
+        elif channel == 3:  # Relais 5 and 6
             rback = self._omny_interferometer_switch_put_and_receive("!0020030\r")
             # if "|0030\r" != self._omny_interferometer_switch_put_and_receive("!0020030\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 4: #Relais 7 and 8
+        elif channel == 4:  # Relais 7 and 8
             rback = self._omny_interferometer_switch_put_and_receive("!00200C0\r")
             # if "|00C0\r" != self._omny_interferometer_switch_put_and_receive("!00200C0\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 5: #Relais 9 and 10
+        elif channel == 5:  # Relais 9 and 10
             rback = self._omny_interferometer_switch_put_and_receive("!0020300\r")
             # if "|0300\r" != self._omny_interferometer_switch_put_and_receive("!0020300\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 6: #Relais 11 and 12
+        elif channel == 6:  # Relais 11 and 12
             rback = self._omny_interferometer_switch_put_and_receive("!0020C00\r")
             # if "|0C00\r" != self._omny_interferometer_switch_put_and_receive("!0020C00\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 7: #Relais 13 and 14
+        elif channel == 7:  # Relais 13 and 14
             rback = self._omny_interferometer_switch_put_and_receive("!0023000\r")
             # if "|3000\r" != self._omny_interferometer_switch_put_and_receive("!0023000\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 8: #Relais 7 and 8 SPECIAL CASE use osafzp y signal to align osa y
+        elif channel == 8:  # Relais 7 and 8 SPECIAL CASE use osafzp y signal to align osa y
             rback = self._omny_interferometer_switch_put_and_receive("!00200C0\r")
             # if "|00C0\r" != self._omny_interferometer_switch_put_and_receive("!00200C0\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
-        elif channel == 9: #Relais 15 and 16
+        elif channel == 9:  # Relais 15 and 16
             rback = self._omny_interferometer_switch_put_and_receive("!002C000\r")
             # if "|C000\r" != self._omny_interferometer_switch_put_and_receive("!002C000\r"):
             #     raise RtOMNY_mirror_switchbox_Error("Channel switching failed.")
@@ -785,14 +821,14 @@ class RtOMNYController(Controller):
         self._omny_interferometer_switch_put_and_receive("!00S01\r")
 
     def _omny_interferometer_switch_alloff(self):
-        #switch all off
+        # switch all off
         self._omny_interferometer_switch_put_and_receive("!0020000\r")
-        #LED OFF
+        # LED OFF
         time.sleep(0.1)
-        self._omny_interferometer_switch_put_and_receive("!00S00\r")   
+        self._omny_interferometer_switch_put_and_receive("!00S00\r")
         time.sleep(0.1)
-        alloff = self._omny_interferometer_switch_put_and_receive("?002\r")   
-        #check all off
+        alloff = self._omny_interferometer_switch_put_and_receive("?002\r")
+        # check all off
         if "00" not in alloff:
             raise RtOMNY_mirror_switchbox_Error("Not all channels switched off.")
 
@@ -800,17 +836,16 @@ class RtOMNYController(Controller):
         self.socket_put("J3")
 
     def _omny_interferometer_get_signalsample(self, channel, averaging_duration):
-        #channel is string, eg ssi_1
-        #ensure no averaging running currently
+        # channel is string, eg ssi_1
+        # ensure no averaging running currently
         self.feedback_is_running()
 
-        #measure first sample
+        # measure first sample
         self._rt_start_averaging_SSI()
         time.sleep(averaging_duration)
         self.feedback_is_running()
         return self.ssi[channel]
 
-
     def _get_signals_from_table(self, return_table) -> dict:
         self.average_stdeviations_x_st_fzp += float(return_table[16])
         self.average_stdeviations_y_st_fzp += float(return_table[18])
@@ -831,7 +866,6 @@ class RtOMNYController(Controller):
             "stdev_x_st_fzp": {"value": float(return_table[16])},
             "average_y_st_fzp": {"value": float(return_table[17])},
             "stdev_y_st_fzp": {"value": float(return_table[18])},
-
             "average_stdeviations_x_st_fzp": {
                 "value": self.average_stdeviations_x_st_fzp / (int(return_table[0]) + 1)
             },
@@ -840,7 +874,7 @@ class RtOMNYController(Controller):
             },
         }
         return signals
-    
+
     @threadlocked
     def start_scan(self):
         if not self.feedback_is_running():
@@ -862,7 +896,6 @@ class RtOMNYController(Controller):
         # start a point-by-point scan (for cont scan in flomni it would be "sa")
         self.socket_put_and_receive("sd")
 
-
     @retry_once
     @threadlocked
     def get_scan_status(self):
@@ -881,7 +914,6 @@ class RtOMNYController(Controller):
         current_position_in_scan = int(float(return_table[2]))
         return (mode, number_of_positions_planned, current_position_in_scan)
 
-
     def get_device_manager(self):
         for axis in self._axis:
             if hasattr(axis, "device_manager") and axis.device_manager:
@@ -953,8 +985,9 @@ class RtOMNYController(Controller):
             "OMNY statistics: Average of all standard deviations [nm]: x"
             f" {self.average_stdeviations_x_st_fzp/read_counter*1000:.1f}, y"
             f" {self.average_stdeviations_y_st_fzp/read_counter*1000:.1f}.",
-            scope="", show_asap=True)
-
+            scope="",
+            show_asap=True,
+        )
 
     def publish_device_data(self, signals, point_id):
         self.get_device_manager().connector.set_and_publish(
@@ -1068,7 +1101,7 @@ class RtOMNYMotor(Device, PositionerBase):
         self.axis_Id = axis_Id
         self.sign = sign
         self.controller = RtOMNYController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
         self.device_manager = device_manager
@@ -1096,6 +1129,10 @@ class RtOMNYMotor(Device, PositionerBase):
             self.low_limit_travel.put(limits[0])
             self.high_limit_travel.put(limits[1])
 
+    def wait_for_connection(self, timeout: int = 10, **kwargs) -> None:
+        """Wait for the device to be connected."""
+        self.controller.on(timeout=timeout)
+
     @property
     def limits(self):
         return (self.low_limit_travel.get(), self.high_limit_travel.get())
@@ -1182,7 +1219,6 @@ class RtOMNYMotor(Device, PositionerBase):
 
         return status
 
-
     @property
     def axis_Id(self):
         return self._axis_Id_alpha
@@ -1227,7 +1263,7 @@ class RtOMNYMotor(Device, PositionerBase):
 
 if __name__ == "__main__":
     rtcontroller = RtOMNYController(
-        socket_cls=SocketIO, socket_host="mpc2844.psi.ch", socket_port=2222
+        socket_cls=SocketIO, socket_host="mpc2844.psi.ch", socket_port=2222, device_manager=None
     )
     rtcontroller.on()
     rtcontroller.laser_tracker_on()

csaxs_bec/devices/smaract/smaract_controller.py

@@ -93,6 +93,7 @@ class SmaractController(Controller):
         socket_cls=None,
         socket_host=None,
         socket_port=None,
+        device_manager=None,
         attr_name="",
         labels=None,
     ):
@@ -102,6 +103,7 @@ class SmaractController(Controller):
                 socket_cls=socket_cls,
                 socket_host=socket_host,
                 socket_port=socket_port,
+                device_manager=device_manager,
                 attr_name=attr_name,
                 parent=parent,
                 labels=labels,

csaxs_bec/devices/smaract/smaract_ophyd.py

@@ -123,10 +123,11 @@ class SmaractMotor(Device, PositionerBase):
         limits=None,
         sign=1,
         socket_cls=SocketIO,
+        device_manager=None,
         **kwargs,
     ):
         self.controller = SmaractController(
-            socket_cls=socket_cls, socket_host=host, socket_port=port
+            socket_cls=socket_cls, socket_host=host, socket_port=port, device_manager=device_manager
         )
         self.axis_Id = axis_Id
         self.sign = sign

csaxs_bec/scans/flomni_fermat_scan.py

@@ -26,12 +26,12 @@ import numpy as np
 from bec_lib import bec_logger, messages
 from bec_lib.endpoints import MessageEndpoints
 from bec_server.scan_server.errors import ScanAbortion
-from bec_server.scan_server.scans import SyncFlyScanBase
+from bec_server.scan_server.scans import AsyncFlyScanBase
 
 logger = bec_logger.logger
 
 
-class FlomniFermatScan(SyncFlyScanBase):
+class FlomniFermatScan(AsyncFlyScanBase):
     scan_name = "flomni_fermat_scan"
     scan_type = "fly"
     required_kwargs = ["fovx", "fovy", "exp_time", "step", "angle"]
@@ -97,6 +97,7 @@ class FlomniFermatScan(SyncFlyScanBase):
             logger.warning("The zshift is smaller than -100 um. It will be limited to -100 um.")
             self.zshift = -100
         self.flomni_rotation_status = None
+        self.flyer_num_pos = 0
 
     def initialize(self):
         self.scan_motors = []
@@ -107,10 +108,6 @@ class FlomniFermatScan(SyncFlyScanBase):
             self.positions, corridor_size=self.optim_trajectory_corridor
         )
 
-    @property
-    def monitor_sync(self):
-        return "rt_flomni"
-
     def reverse_trajectory(self):
         """
         Reverse the trajectory. Every other scan should be reversed to
@@ -135,13 +132,13 @@ class FlomniFermatScan(SyncFlyScanBase):
         if flip_axes:
             self.positions = np.flipud(self.positions)
 
-        self.num_pos = len(self.positions)
+        self.flyer_num_pos = len(self.positions)
         self._check_min_positions()
 
     def _check_min_positions(self):
-        if self.num_pos < 20:
+        if self.flyer_num_pos < 20:
             raise ScanAbortion(
-                f"The number of positions must exceed 20. Currently: {self.num_pos}."
+                f"The number of positions must exceed 20. Currently: {self.flyer_num_pos}."
             )
 
     def _prepare_setup(self):
@@ -150,6 +147,8 @@ class FlomniFermatScan(SyncFlyScanBase):
 
         yield from self.stubs.send_rpc_and_wait("rty", "set", self.positions[0][1])
 
+        yield from self.stubs.scan_report_instruction({"device_progress": ["rt_flyer"]})
+
     def _prepare_setup_part2(self):
         if self.flomni_rotation_status:
             self.flomni_rotation_status.wait()
@@ -169,12 +168,16 @@ class FlomniFermatScan(SyncFlyScanBase):
         tracker_signal_status = yield from self.stubs.send_rpc_and_wait(
             "rtx", "controller.laser_tracker_check_signalstrength"
         )
-        #self.device_manager.connector.send_client_info(tracker_signal_status)
+        # self.device_manager.connector.send_client_info(tracker_signal_status)
         if tracker_signal_status == "low":
             self.device_manager.connector.raise_alarm(
                 severity=0,
                 alarm_type="LaserTrackerSignalStrength",
-                source={"device": "rtx", "reason": "low signal strength", "method": "_prepare_setup_part2"},
+                source={
+                    "device": "rtx",
+                    "reason": "low signal strength",
+                    "method": "_prepare_setup_part2",
+                },
                 metadata={},
                 msg="Signal strength of the laser tracker is low, sufficient to continue. Realignment recommended!",
             )
@@ -276,26 +279,13 @@ class FlomniFermatScan(SyncFlyScanBase):
         return np.array(positions)
 
     def scan_core(self):
-        # use a device message to receive the scan number and
-        # scan ID before sending the message to the device server
-        yield from self.stubs.kickoff(device="rtx")
-        while True:
-            yield from self.stubs.read(group="monitored")
-            status = self.connector.get(MessageEndpoints.device_status("rt_scan"))
-            if status:
-                status_id = status.content.get("status", 1)
-                request_id = status.metadata.get("RID")
-                if status_id == 0 and self.metadata.get("RID") == request_id:
-                    break
-                if status_id == 2 and self.metadata.get("RID") == request_id:
-                    raise ScanAbortion(
-                        "An error occured during the flomni readout:"
-                        f" {status.metadata.get('error')}"
-                    )
-
+        status = yield from self.stubs.kickoff(device="rt_flyer", wait=False)
+        while not status.done:
+            yield from self.stubs.read(group="monitored", point_id=self.point_id)
             time.sleep(1)
+            self.point_id += 1
             logger.debug("reading monitors")
-        # yield from self.device_rpc("rtx", "controller.kickoff")
+        self.num_pos = self.point_id
 
     def move_to_start(self):
         """return to the start position"""

tests/tests_devices/test_fupr_ophyd.py

@@ -7,10 +7,15 @@ from csaxs_bec.devices.omny.galil.fupr_ophyd import FuprGalilController, FuprGal
 
 
 @pytest.fixture
-def fsamroy():
+def fsamroy(dm_with_devices):
     FuprGalilController._reset_controller()
     fsamroy_motor = FuprGalilMotor(
-        "A", name="fsamroy", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
+        "A",
+        name="fsamroy",
+        host="mpc2680.psi.ch",
+        port=8081,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     fsamroy_motor.controller.on()
     assert isinstance(fsamroy_motor.controller, FuprGalilController)

tests/tests_devices/test_galil.py

@@ -8,10 +8,15 @@ from csaxs_bec.devices.omny.galil.lgalil_ophyd import LamniGalilController, Lamn
 
 
 @pytest.fixture(scope="function")
-def leyey():
+def leyey(dm_with_devices):
     LamniGalilController._reset_controller()
     leyey_motor = LamniGalilMotor(
-        "H", name="leyey", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
+        "H",
+        name="leyey",
+        host="mpc2680.psi.ch",
+        port=8081,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     leyey_motor.controller.on()
     yield leyey_motor
@@ -20,10 +25,15 @@ def leyey():
 
 
 @pytest.fixture(scope="function")
-def leyex():
+def leyex(dm_with_devices):
     LamniGalilController._reset_controller()
     leyex_motor = LamniGalilMotor(
-        "A", name="leyey", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
+        "A",
+        name="leyey",
+        host="mpc2680.psi.ch",
+        port=8081,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     leyex_motor.controller.on()
     yield leyex_motor

tests/tests_devices/test_galil_flomni.py

@@ -7,10 +7,15 @@ from csaxs_bec.devices.omny.galil.fgalil_ophyd import FlomniGalilController, Flo
 
 
 @pytest.fixture(scope="function")
-def leyey():
+def leyey(dm_with_devices):
     FlomniGalilController._reset_controller()
     leyey_motor = FlomniGalilMotor(
-        "H", name="leyey", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
+        "H",
+        name="leyey",
+        host="mpc2680.psi.ch",
+        port=8081,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     leyey_motor.controller.on()
     yield leyey_motor
@@ -19,10 +24,15 @@ def leyey():
 
 
 @pytest.fixture(scope="function")
-def leyex():
+def leyex(dm_with_devices):
     FlomniGalilController._reset_controller()
     leyex_motor = FlomniGalilMotor(
-        "H", name="leyey", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
+        "H",
+        name="leyey",
+        host="mpc2680.psi.ch",
+        port=8081,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     leyex_motor.controller.on()
     yield leyex_motor
@@ -157,11 +167,16 @@ def test_find_reference(leyex, axis_nr, socket_put_messages, socket_get_messages
     ],
 )
 def test_fosaz_light_curtain_is_triggered(
-    axis_Id, socket_put_messages, socket_get_messages, triggered
+    axis_Id, socket_put_messages, socket_get_messages, triggered, dm_with_devices
 ):
     """test that the light curtain is triggered"""
     fosaz = FlomniGalilMotor(
-        axis_Id, name="fosaz", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
+        axis_Id,
+        name="fosaz",
+        host="mpc2680.psi.ch",
+        port=8081,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     fosaz.controller.on()
     fosaz.controller.sock.flush_buffer()

tests/tests_devices/test_npoint_piezo.py

@@ -16,7 +16,10 @@ def controller():
     """
     with mock.patch("ophyd_devices.utils.socket.SocketIO") as socket_cls:
         controller = NPointController(
-            socket_cls=socket_cls, socket_host="localhost", socket_port=1234
+            socket_cls=socket_cls,
+            socket_host="localhost",
+            socket_port=1234,
+            device_manager=mock.MagicMock(),
         )
         controller.on()
         controller.sock.reset_mock()
@@ -25,13 +28,18 @@ def controller():
 
 
 @pytest.fixture
-def npointx():
+def npointx(dm_with_devices):
     """
     Fixture to create a NPointAxis object.
     """
     controller = mock.MagicMock()
     npointx = NPointAxis(
-        axis_Id="A", name="npointx", host="localhost", port=1234, socket_cls=controller
+        axis_Id="A",
+        name="npointx",
+        host="localhost",
+        port=1234,
+        socket_cls=controller,
+        device_manager=dm_with_devices,
     )
     npointx.controller.on()
     npointx.controller.sock.reset_mock()
@@ -107,13 +115,18 @@ def test_axis_get_in(npointx, axis, msg_in, msg_out):
     npointx.controller.sock.put.assert_called_once_with(msg_in)
 
 
-def test_axis_out_of_range(controller):
+def test_axis_out_of_range(dm_with_devices):
     """
     Test that an error is raised when trying to create an NPointAxis object with an invalid axis ID.
     """
     with pytest.raises(ValueError):
         npointx = NPointAxis(
-            axis_Id="G", name="npointx", host="localhost", port=1234, socket_cls=mock.MagicMock()
+            axis_Id="G",
+            name="npointx",
+            host="localhost",
+            port=1234,
+            socket_cls=mock.MagicMock(),
+            device_manager=dm_with_devices,
         )
 
 

tests/tests_devices/test_rt_flomni.py

@@ -11,7 +11,11 @@ from csaxs_bec.devices.omny.rt.rt_ophyd import RtError
 def rt_flomni():
     RtFlomniController._reset_controller()
     rt_flomni = RtFlomniController(
-        name="rt_flomni", socket_cls=SocketMock, socket_host="localhost", socket_port=8081
+        name="rt_flomni",
+        socket_cls=SocketMock,
+        socket_host="localhost",
+        socket_port=8081,
+        device_manager=mock.MagicMock(),
     )
     with mock.patch.object(rt_flomni, "get_device_manager"):
         with mock.patch.object(rt_flomni, "sock"):
@@ -76,16 +80,16 @@ def test_move_samx_to_scan_region(rt_flomni):
 
 
 def test_feedback_enable_without_reset(rt_flomni):
-    with mock.patch.object(rt_flomni, "set_device_enabled") as set_device_enabled:
+    with mock.patch.object(rt_flomni, "set_device_read_write") as set_device_read_write:
         with mock.patch.object(rt_flomni, "feedback_is_running", return_value=True):
             with mock.patch.object(rt_flomni, "laser_tracker_on") as laser_tracker_on:
                 rt_flomni.feedback_enable_without_reset()
                 laser_tracker_on.assert_called_once()
                 assert mock.call(b"l3\n") in rt_flomni.sock.put.mock_calls
-                assert mock.call("fsamx", False) in set_device_enabled.mock_calls
-                assert mock.call("fsamy", False) in set_device_enabled.mock_calls
-                assert mock.call("foptx", False) in set_device_enabled.mock_calls
-                assert mock.call("fopty", False) in set_device_enabled.mock_calls
+                assert mock.call("fsamx", False) in set_device_read_write.mock_calls
+                assert mock.call("fsamy", False) in set_device_read_write.mock_calls
+                assert mock.call("foptx", False) in set_device_read_write.mock_calls
+                assert mock.call("fopty", False) in set_device_read_write.mock_calls
 
 
 def test_feedback_enable_without_reset_raises(rt_flomni):

tests/tests_devices/test_smaract.py

@@ -10,19 +10,27 @@ from csaxs_bec.devices.smaract.smaract_ophyd import SmaractMotor
 
 
 @pytest.fixture
-def controller():
+def controller(dm_with_devices):
     SmaractController._reset_controller()
-    controller = SmaractController(socket_cls=SocketMock, socket_host="dummy", socket_port=123)
+    controller = SmaractController(
+        socket_cls=SocketMock, socket_host="dummy", socket_port=123, device_manager=dm_with_devices
+    )
     controller.on()
     controller.sock.flush_buffer()
     yield controller
 
 
 @pytest.fixture
-def lsmarA():
+def lsmarA(dm_with_devices):
     SmaractController._reset_controller()
     motor_a = SmaractMotor(
-        "A", name="lsmarA", host="mpc2680.psi.ch", port=8085, sign=1, socket_cls=SocketMock
+        "A",
+        name="lsmarA",
+        host="mpc2680.psi.ch",
+        port=8085,
+        sign=1,
+        socket_cls=SocketMock,
+        device_manager=dm_with_devices,
     )
     motor_a.controller.on()
     motor_a.controller.sock.flush_buffer()