3 Commits

Include renames

Author	SHA1	Message	Date
x01dcandClaude Sonnet 5	d119bd2ce8	fix(flomni): widen tomo_type-4 angle range to stage overtravel; fix GUI clipping ... Angle files now accept -2 to 362 degrees (the fsamroy rotation stage's physical overtravel range) instead of the nominal 0-360 sweep. This required widening both the parser's bounds (angle_file.py) and _tomo_scan_at_angle()'s own gate (a new _min_scan_angle(), alongside the existing _max_scan_angle()) -- without the latter, an angle just outside [0, 360] would have parsed fine but then been silently skipped during acquisition with no error, which is worse than rejecting it upfront. Also fixes the type-4 GUI section's "Content:" label clipping its second wrapped line: QFormLayout sizes that row from the label's sizeHint() at construction (holding the short "---" placeholder) and doesn't reliably recompute it when setText() later swaps in longer, word-wrapped content. _set_angle_file_summary() now recomputes the label's minimum height from heightForWidth() after every update. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01NPZ9gzN2rt3wgiMnTKyrug	2026-10-01 11:49:49 +02:00
x01dcandClaude Sonnet 5	67884c0c3f	feat(flomni): tomo_type 4 -- live-appendable angle files, per-line overrides ... Angle files can now be grown while a scan is running: tomo_scan() polls and re-reads the file whenever it catches up to the current end, picking up newly appended lines automatically instead of requiring tomo_scan_resume(). A file is "complete" only once it ends with an explicit END sentinel line -- without one the scan waits indefinitely at EOF rather than stopping, so a static/legacy angle file needs END appended or a scan against it will hang at the end. Each line may also carry optional step=/exptime=/frames= key=value tokens overriding the Fermat step size, exposure time, and burst frame count for that projection and (sticky) every one after it, falling back to the live tomo_parameters() configuration whenever not set. Threaded through as kwargs that default to None and are omitted when empty, so every existing tomo_type 1/2/3 call site and test stub is unaffected. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01NPZ9gzN2rt3wgiMnTKyrug	2026-10-01 11:01:16 +02:00
x01dcandClaude Opus 5.5	35ac94cfd5	feat(flomni): tomo_type 4 -- angles read from a file ... New angular sampling mode: tomo_angle_file points to a plain-text file with one angle (0-360 deg) per line, optional 2nd column = sub-tomogram number, '#' comments. Only the path is stored; the file is re-read at every tomo_scan() start, resume and queued-job run, so an edited file always takes effect on the next (re)start. The parsed angle list is logged to scilog at scan start. - OMNY_shared/angle_file.py: shared pure parser + summary, incl. warning for 180-deg-opposite/duplicate angles - flomni: tomo_type 4 branch in tomo_scan()/tomo_scan_resume(), bad file fails before any acquisition, angles >180 not gated by tomo_angle_range, CLI prompt/display, PDF report - tomo queue: path snapshotted per job; setter does not validate so stale paths never break non-type-4 jobs; reacquire bounds by file - TomoParams widget: type 4 (flomni only) with Browse... file dialog, live content preview, validation blocking Submit/Add to queue - webpage: show angle file in param tables Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>	2026-09-30 14:46:56 +02:00