docs(omny): document manual tomo_alignment_fit offset nudge
CI for csaxs_bec / test (push) Failing after 2m5s
CI for csaxs_bec / test (push) Failing after 2m5s
Port the flomni doc addition to omny -- both setups share the identical tomo_alignment_fit mechanism (OMNYAlignmentMixin.get_alignment_offset mirrors Flomni's), so the same command-line offset nudge applies verbatim. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01FFeiCHv3qUxxssmP9Qzhom
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@@ -378,6 +378,21 @@ The loading routine uses default values for the vertical alignment for setup. Th
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At each projection, the angular dependent is computed by
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`omny.get_alignment_offset(angle)`, with _angle_ in degrees.
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To manually nudge the alignment by a few microns without recording a new fit,
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edit the constant offset term of the currently loaded fit directly:
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```python
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fit = omny.client.get_global_var("tomo_alignment_fit")
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fit[0][2] += 5.0 # x offset, microns
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fit[1][2] += 3.0 # y offset, microns
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omny.client.set_global_var("tomo_alignment_fit", fit)
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```
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`tomo_alignment_fit` is a 2x5 list (row 0 = x, row 1 = y); column 2 in each
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row is the constant offset of the sinusoidal fit
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(`correction = A*sin(angle + phase) + offset [+ 3rd-order term for y]`), so
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changing it shifts the correction by that amount at every angle without
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touching the fitted amplitude/phase. Check the result with
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`omny.get_alignment_offset(angle)`.
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The alignment can be cleared by
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`omny.reset_tomo_alignment_fit()`
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