docs(omny): document manual tomo_alignment_fit offset nudge
CI for csaxs_bec / test (push) Failing after 2m5s

Port the flomni doc addition to omny -- both setups share the identical
tomo_alignment_fit mechanism (OMNYAlignmentMixin.get_alignment_offset
mirrors Flomni's), so the same command-line offset nudge applies verbatim.

Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01FFeiCHv3qUxxssmP9Qzhom
This commit is contained in:
x12sa
2026-09-13 21:56:15 +02:00
co-authored by Claude Sonnet 5
parent d100af5429
commit df7c90c5d7
+15
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@@ -378,6 +378,21 @@ The loading routine uses default values for the vertical alignment for setup. Th
At each projection, the angular dependent is computed by
`omny.get_alignment_offset(angle)`, with _angle_ in degrees.
To manually nudge the alignment by a few microns without recording a new fit,
edit the constant offset term of the currently loaded fit directly:
```python
fit = omny.client.get_global_var("tomo_alignment_fit")
fit[0][2] += 5.0 # x offset, microns
fit[1][2] += 3.0 # y offset, microns
omny.client.set_global_var("tomo_alignment_fit", fit)
```
`tomo_alignment_fit` is a 2x5 list (row 0 = x, row 1 = y); column 2 in each
row is the constant offset of the sinusoidal fit
(`correction = A*sin(angle + phase) + offset [+ 3rd-order term for y]`), so
changing it shifts the correction by that amount at every angle without
touching the fitted amplitude/phase. Check the result with
`omny.get_alignment_offset(angle)`.
The alignment can be cleared by
`omny.reset_tomo_alignment_fit()`