added heartbeat, start and remaining time to progress
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CI for csaxs_bec / test (push) Successful in 1m57s
All checks were successful
CI for csaxs_bec / test (push) Successful in 1m57s
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@@ -1229,6 +1229,9 @@ class _ProgressProxy:
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"total_projections": 1,
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"angle": 0,
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"tomo_type": 0,
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"tomo_start_time": None,
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"estimated_remaining_time": None,
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"heartbeat": None,
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}
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def __init__(self, client):
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@@ -1770,6 +1773,7 @@ class Flomni(
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successful = False
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error_caught = False
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if 0 <= angle < 180.05:
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self.progress["heartbeat"] = datetime.datetime.now().isoformat()
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print(f"Starting flOMNI scan for angle {angle} in subtomo {subtomo_number}")
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self._print_progress()
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while not successful:
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@@ -1844,6 +1848,7 @@ class Flomni(
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# else:
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self.tomo_id = 0
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self.write_pdf_report()
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self.progress["tomo_start_time"] = datetime.datetime.now().isoformat()
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with scans.dataset_id_on_hold:
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if self.tomo_type == 1:
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@@ -1953,14 +1958,42 @@ class Flomni(
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self._print_progress()
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self.OMNYTools.printgreenbold("Tomoscan finished")
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@staticmethod
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def _format_duration(seconds: float) -> str:
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"""Format a duration in seconds as a human-readable string, e.g. '2h 03m 15s'."""
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seconds = int(seconds)
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h, remainder = divmod(seconds, 3600)
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m, s = divmod(remainder, 60)
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if h > 0:
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return f"{h}h {m:02d}m {s:02d}s"
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if m > 0:
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return f"{m}m {s:02d}s"
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return f"{s}s"
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def _print_progress(self):
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# --- compute and store estimated remaining time -----------------------
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start_str = self.progress.get("tomo_start_time")
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projection = self.progress["projection"]
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total = self.progress["total_projections"]
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if start_str is not None and total > 0 and projection > 0:
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elapsed = (
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datetime.datetime.now() - datetime.datetime.fromisoformat(start_str)
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).total_seconds()
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rate = projection / elapsed # projections per second
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remaining_s = (total - projection) / rate
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self.progress["estimated_remaining_time"] = remaining_s
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eta_str = self._format_duration(remaining_s)
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else:
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eta_str = "N/A"
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# ----------------------------------------------------------------------
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print("\x1b[95mProgress report:")
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print(f"Tomo type: ....................... {self.progress['tomo_type']}")
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print(f"Projection: ...................... {self.progress['projection']:.0f}")
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print(f"Total projections expected ....... {self.progress['total_projections']}")
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print(f"Angle: ........................... {self.progress['angle']}")
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print(f"Current subtomo: ................. {self.progress['subtomo']}")
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print(f"Current projection within subtomo: {self.progress['subtomo_projection']}\x1b[0m")
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print(f"Current projection within subtomo: {self.progress['subtomo_projection']}")
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print(f"Estimated remaining time: ........ {eta_str}\x1b[0m")
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self._flomnigui_update_progress()
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def add_sample_database(
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@@ -243,6 +243,31 @@ class flomniGuiTools:
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main_progress_ring.set_value(progress)
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subtomo_progress_ring.set_value(subtomo_progress)
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# --- format start time for display --------------------------------
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start_str = self.progress.get("tomo_start_time")
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if start_str is not None:
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import datetime as _dt
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start_display = _dt.datetime.fromisoformat(start_str).strftime("%Y-%m-%d %H:%M:%S")
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else:
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start_display = "N/A"
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# --- format estimated remaining time ------------------------------
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remaining_s = self.progress.get("estimated_remaining_time")
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if remaining_s is not None and remaining_s >= 0:
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import datetime as _dt
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remaining_s = int(remaining_s)
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h, rem = divmod(remaining_s, 3600)
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m, s = divmod(rem, 60)
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if h > 0:
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eta_display = f"{h}h {m:02d}m {s:02d}s"
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elif m > 0:
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eta_display = f"{m}m {s:02d}s"
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else:
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eta_display = f"{s}s"
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else:
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eta_display = "N/A"
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# ------------------------------------------------------------------
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text = (
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f"Progress report:\n"
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f" Tomo type: {self.progress['tomo_type']}\n"
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@@ -251,7 +276,9 @@ class flomniGuiTools:
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f" Angle: {self.progress['angle']:.1f}\n"
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f" Current subtomo: {self.progress['subtomo']}\n"
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f" Current projection within subtomo: {self.progress['subtomo_projection']}\n"
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f" Total projections per subtomo: {int(self.progress['subtomo_total_projections'])}"
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f" Total projections per subtomo: {int(self.progress['subtomo_total_projections'])}\n"
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f" Scan started: {start_display}\n"
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f" Est. remaining: {eta_display}"
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)
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self.progressbar.set_center_label(text)
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