moved tomo_reconstruct to tomo_scan_projection
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CI for csaxs_bec / test (push) Successful in 1m59s
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@@ -1621,7 +1621,6 @@ class Flomni(
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try:
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start_scan_number = bec.queue.next_scan_number
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self.tomo_scan_projection(angle)
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self.tomo_reconstruct()
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error_caught = False
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except AlarmBase as exc:
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if exc.alarm_type == "TimeoutError":
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@@ -2017,7 +2016,6 @@ class Flomni(
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return
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self.tomo_scan_projection(angle)
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self.tomo_reconstruct()
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def _golden(self, ii, howmany_sorted, maxangle, reverse=False):
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"""returns the iis golden ratio angle of sorted bunches of howmany_sorted and its subtomo number"""
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@@ -2135,6 +2133,9 @@ class Flomni(
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corridor_size=corridor_size,
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)
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self.tomo_reconstruct()
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def tomo_parameters(self):
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"""print and update the tomo parameters"""
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print("Current settings:")
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@@ -2291,7 +2292,7 @@ class Flomni(
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f"{'Exposure time:':<{padding}}{self.tomo_countingtime:>{padding}.2f}\n",
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f"{'Fermat spiral step size:':<{padding}}{self.tomo_shellstep:>{padding}.2f}\n",
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f"{'FOV:':<{padding}}{fovxy:>{padding}}\n",
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f"{'Stitching:':<{padding}}{stitching:>{padding}}\n",
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f"{'Stitching:':<{padding}}{stitching:>{padding}.0f}\n",
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f"{'Number of individual sub-tomograms:':<{padding}}{8:>{padding}}\n",
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f"{'Angular step within sub-tomogram:':<{padding}}{self.tomo_angle_stepsize:>{padding}.2f}\n",
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]
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