replaced all epics put with direct gui access
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CI for csaxs_bec / test (push) Successful in 1m22s
All checks were successful
CI for csaxs_bec / test (push) Successful in 1m22s
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@@ -24,7 +24,7 @@ if TYPE_CHECKING:
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class XrayEyeAlign:
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# pixel calibration, multiply to get mm
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labview=False
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test_wo_movments=True
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PIXEL_CALIBRATION = 0.1 / 113 # .2 with binning
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def __init__(self, client, flomni: Flomni) -> None:
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@@ -48,33 +48,16 @@ class XrayEyeAlign:
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epics_put("XOMNYI-XEYE-SAVFRAME:0", 1)
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def update_frame(self,keep_shutter_open=False):
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if self.labview:
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epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
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if not self.labview:
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self.flomni.flomnigui_show_xeyealign()
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if not dev.cam_xeye.live_mode:
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dev.cam_xeye.live_mode = True
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self.flomni.flomnigui_show_xeyealign()
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if not dev.cam_xeye.live_mode:
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dev.cam_xeye.live_mode = True
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# epics_put("XOMNYI-XEYE-ACQ:0", 1)
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self.gui.on_live_view_enabled(True)
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self.gui.sample_name = 'straigth after init'
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if self.labview:
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# wait for start live
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while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
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time.sleep(0.5)
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print("waiting for live view to start...")
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dev.omnyfsh.fshopen()
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if self.labview:
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epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
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while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
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print("waiting for new frame...")
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time.sleep(0.5)
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time.sleep(0.5)
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# stop live view
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if not keep_shutter_open:
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@@ -82,34 +65,36 @@ class XrayEyeAlign:
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self.gui.on_live_view_enabled(False)
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time.sleep(0.1)
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dev.omnyfsh.fshclose()
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print("got new frame")
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print("Received new frame.")
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else:
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print("Staying in live view, shutter is and remains open!")
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def tomo_rotate(self, val: float):
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# pylint: disable=undefined-variable
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umv(self.device_manager.devices.fsamroy, val)
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if not self.test_wo_movments:
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umv(self.device_manager.devices.fsamroy, val)
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def get_tomo_angle(self):
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return self.device_manager.devices.fsamroy.readback.get()
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def update_fov(self, k: int):
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self._xray_fov_xy[0] = max(epics_get(f"XOMNYI-XEYE-XWIDTH_X:{k}"), self._xray_fov_xy[0])
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self._xray_fov_xy[1] = max(0, self._xray_fov_xy[0])
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self._xray_fov_xy[1] = max(epics_get(f"XOMNYI-XEYE-YWIDTH_Y:{k}"), self._xray_fov_xy[1])
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# @property
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# def movement_buttons_enabled(self):
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# return [epics_get("XOMNYI-XEYE-ENAMVX:0"), epics_get("XOMNYI-XEYE-ENAMVY:0")]
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# @movement_buttons_enabled.setter
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def movement_buttons_enabled(self, enabled: bool):
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def movement_buttons_enabled(self, enablex: bool, enabley: bool):
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# enabled = int(enabled)
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# epics_put("XOMNYI-XEYE-ENAMVX:0", enabled)
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# epics_put("XOMNYI-XEYE-ENAMVY:0", enabled)
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self.gui.on_motors_enable(enabled,enabled)
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self.gui.on_motors_enable(enablex,enabley)
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def send_message(self, msg: str):
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# epics_put("XOMNYI-XEYE-MESSAGE:0.DESC", msg)
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print(f"In alginment GUI: {msg}")
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self.gui.user_message = msg
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def align(self,keep_shutter_open=False):
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@@ -119,10 +104,16 @@ class XrayEyeAlign:
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print("This routine can be called with paramter keep_shutter_open=True to keep the shutter always open")
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self.send_message("Getting things ready. Please wait...")
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#potential unresolved movement requests to zero
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# epics_put("XOMNYI-XEYE-MVX:0", 0)
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# epics_put("XOMNYI-XEYE-MVY:0", 0)
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self.movement_buttons_enabled(False)
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self.gui.enable_submit_button(False)
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#Initialize xray align device
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#clear potential pending movement requests
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epics_put("XOMNYI-XEYE-MVX:0", 0)
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epics_put("XOMNYI-XEYE-MVY:0", 0)
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#reset submit channel
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epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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self.movement_buttons_enabled(False, False)
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# reset shift xy and fov params
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self._reset_init_values()
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@@ -131,18 +122,19 @@ class XrayEyeAlign:
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self.flomni.flomnigui_show_xeyealign()
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self.flomni.flomnigui_raise()
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if not self.test_wo_movments:
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self.tomo_rotate(0)
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#epics_put("XOMNYI-XEYE-ANGLE:0", 0)
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self.tomo_rotate(0)
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epics_put("XOMNYI-XEYE-ANGLE:0", 0)
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self.flomni.feye_in()
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self.flomni.feye_in()
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self.flomni.laser_tracker_on()
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self.flomni.feedback_enable_with_reset()
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# disable movement buttons
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self.movement_buttons_enabled(False)
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self.movement_buttons_enabled(False,False)
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sample_name = self.flomni.sample_get_name(0)
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# epics_put("XOMNYI-XEYE-SAMPLENAME:0.DESC", sample_name)
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@@ -151,19 +143,17 @@ class XrayEyeAlign:
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# this makes sure we are in a defined state
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self.flomni.feedback_disable()
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epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
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#epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
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if not self.test_wo_movments:
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self.flomni.fosa_out()
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self.flomni.fosa_out()
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fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
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umv(dev.fsamx, fsamx_in - 0.25)
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fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
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#umv(dev.fsamx, fsamx_in - 0.25)
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self.flomni.ffzp_in()
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self.flomni.ffzp_in()
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self.update_frame(keep_shutter_open)
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# enable submit buttons
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# self.movement_buttons_enabled(False)
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epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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self.gui.enable_submit_button(True)
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epics_put("XOMNYI-XEYE-STEP:0", 0) #TODO convert later
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self.send_message("Submit center value of FZP.")
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@@ -171,6 +161,8 @@ class XrayEyeAlign:
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k = 0
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while True:
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if epics_get("XOMNYI-XEYE-SUBMIT:0") == 1:
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#reset submit channel
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epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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val_x = epics_get(f"XOMNYI-XEYE-XVAL_X:{k}") / 2 * self.PIXEL_CALIBRATION # in mm
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self.alignment_values[k] = val_x
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print(f"Clicked position {k}: x {self.alignment_values[k]}")
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@@ -181,52 +173,49 @@ class XrayEyeAlign:
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if k == 0: # received center value of FZP
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self.send_message("please wait ...")
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self.movement_buttons_enabled = False
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epics_put("XOMNYI-XEYE-SUBMIT:0", -1) # disable submit button
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self.movement_buttons_enabled(False, False)
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#epics_put("XOMNYI-XEYE-SUBMIT:0", -1) # disable submit button
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self.gui.enable_submit_button(False)
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self.flomni.feedback_disable()
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fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
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#(dev.fsamx, fsamx_in)
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if not self.test_wo_movments:
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fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
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umv(dev.fsamx, fsamx_in)
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self.flomni.foptics_out()
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self.flomni.foptics_out()
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self.flomni.feedback_disable()
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#umv(dev.fsamx, fsamx_in - 0.25)
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if self.labview:
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self.update_frame(keep_shutter_open)
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epics_put("XOMNYI-XEYE-RECBG:0", 1)
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while epics_get("XOMNYI-XEYE-RECBG:0") == 1:
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time.sleep(0.5)
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print("waiting for background frame...")
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#umv(dev.fsamx, fsamx_in)
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time.sleep(0.5)
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time.sleep(0.5)
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self.flomni.feedback_enable_with_reset()
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self.update_frame(keep_shutter_open)
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self.send_message("Adjust sample height and submit center")
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epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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self.movement_buttons_enabled = True
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self.send_message("Step 1/5: Adjust sample height and submit center")
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self.gui.enable_submit_button(True)
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#epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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self.movement_buttons_enabled(True, True)
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elif 1 <= k < 5: # received sample center value at samroy 0 ... 315
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self.send_message("please wait ...")
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epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
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self.movement_buttons_enabled = False
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self.gui.enable_submit_button(False)
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#epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
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self.movement_buttons_enabled(False, False)
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umv(dev.rtx, 0)
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self.tomo_rotate(k * 45)
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epics_put("XOMNYI-XEYE-ANGLE:0", self.get_tomo_angle())
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self.update_frame(keep_shutter_open)
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self.send_message("Submit sample center")
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epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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epics_put("XOMNYI-XEYE-ENAMVX:0", 1)
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self.send_message(f"Step {k+1}/5: Submit sample center")
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self.gui.enable_submit_button(True)
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#epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
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#epics_put("XOMNYI-XEYE-ENAMVX:0", 1)
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self.movement_buttons_enabled(True, False)
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self.update_fov(k)
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elif k == 5: # received sample center value at samroy 270 and done
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self.send_message("done...")
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epics_put("XOMNYI-XEYE-SUBMIT:0", -1) # disable submit button
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self.movement_buttons_enabled = False
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self.gui.enable_submit_button(False)
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#epics_put("XOMNYI-XEYE-SUBMIT:0", -1) # disable submit button
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self.movement_buttons_enabled(False,False)
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self.update_fov(k)
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break
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@@ -248,38 +237,37 @@ class XrayEyeAlign:
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_xrayeyalignmvy = epics_get("XOMNYI-XEYE-MVY:0")
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if _xrayeyalignmvy != 0:
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self.flomni.feedback_disable()
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umvr(dev.fsamy, _xrayeyalignmvy / 1000)
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if not self.test_wo_movments:
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umvr(dev.fsamy, _xrayeyalignmvy / 1000)
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time.sleep(2)
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epics_put("XOMNYI-XEYE-MVY:0", 0)
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self.flomni.feedback_enable_with_reset()
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self.update_frame(keep_shutter_open)
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time.sleep(0.2)
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time.sleep(0.1)
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self.write_output()
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fovx = self._xray_fov_xy[0] * self.PIXEL_CALIBRATION * 1000 / 2
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fovy = self._xray_fov_xy[1] * self.PIXEL_CALIBRATION * 1000 / 2
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self.tomo_rotate(0)
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umv(dev.rtx, 0)
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# free camera
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if self.labview:
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epics_put("XOMNYI-XEYE-ACQ:0", 2)
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if keep_shutter_open and not self.labview:
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if keep_shutter_open:
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if self.flomni.OMNYTools.yesno("Close the shutter now?","y"):
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dev.omnyfsh.fshclose()
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epics_put("XOMNYI-XEYE-ACQ:0", 0)
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print("setting 'XOMNYI-XEYE-ACQ:0'")
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if not self.labview:
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pass #self.flomni.flomnigui_idle()
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#self.flomni.flomnigui_idle()
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print(
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f"The largest field of view from the xrayeyealign was \nfovx = {fovx:.0f} microns, fovy"
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f" = {fovy:.0f} microns"
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)
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print("Use the matlab routine to FIT the current alignment...")
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print("Check the fit in the GUI...")
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print("Then LOAD ALIGNMENT PARAMETERS by running flomni.read_alignment_offset()\n")
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