Compare commits
6 Commits
perl_d-mai
...
main
| Author | SHA1 | Date | |
|---|---|---|---|
| d1e035e01e | |||
| d49d9cef33 | |||
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a62fe77b56
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| e642cbaae8 | |||
| 37bfc1c2a2 | |||
| 63ded2bf7d |
@@ -2,8 +2,8 @@
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# It is needed to track the repo template version, and editing may break things.
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# This file will be overwritten by copier on template updates.
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_commit: v1.0.3
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_src_path: https://gitea.psi.ch/bec/bec_plugin_copier_template.git
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make_commit: true
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_commit: v1.2.8
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_src_path: https://github.com/bec-project/plugin_copier_template.git
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make_commit: false
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project_name: addams_bec
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widget_plugins_input: []
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102
.gitea/workflows/ci.yml
Normal file
102
.gitea/workflows/ci.yml
Normal file
@@ -0,0 +1,102 @@
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name: CI for addams_bec
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on:
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push:
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pull_request:
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workflow_dispatch:
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inputs:
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BEC_WIDGETS_BRANCH:
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description: "Branch of BEC Widgets to install"
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required: false
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type: string
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default: "main"
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BEC_CORE_BRANCH:
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description: "Branch of BEC Core to install"
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required: false
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type: string
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default: "main"
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OPHYD_DEVICES_BRANCH:
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description: "Branch of Ophyd Devices to install"
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required: false
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type: string
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default: "main"
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BEC_PLUGIN_REPO_BRANCH:
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description: "Branch of the BEC Plugin Repository to install"
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required: false
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type: string
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default: "main"
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PYTHON_VERSION:
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description: "Python version to use"
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required: false
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type: string
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default: "3.12"
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permissions:
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pull-requests: write
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jobs:
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test:
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runs-on: ubuntu-latest
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env:
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QTWEBENGINE_DISABLE_SANDBOX: 1
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QT_QPA_PLATFORM: "offscreen"
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steps:
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- name: Setup Python
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uses: actions/setup-python@v5
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with:
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python-version: "${{ inputs.PYTHON_VERSION || '3.12' }}"
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- name: Checkout BEC Plugin Repository
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uses: actions/checkout@v4
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with:
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repository: bec/addams_bec
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ref: "${{ inputs.BEC_PLUGIN_REPO_BRANCH || github.head_ref || github.sha }}"
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path: ./addams_bec
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- name: Lint for merge conflicts from template updates
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shell: bash
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# Find all Copier conflicts except this line
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run: '! grep -r "<<<<<<< before updating" | grep -v "grep -r \"<<<<<<< before updating"'
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- name: Checkout BEC Core
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uses: actions/checkout@v4
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with:
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repository: bec/bec
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ref: "${{ inputs.BEC_CORE_BRANCH || 'main' }}"
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path: ./bec
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- name: Checkout Ophyd Devices
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uses: actions/checkout@v4
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with:
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repository: bec/ophyd_devices
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ref: "${{ inputs.OPHYD_DEVICES_BRANCH || 'main' }}"
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path: ./ophyd_devices
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- name: Checkout BEC Widgets
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uses: actions/checkout@v4
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with:
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repository: bec/bec_widgets
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ref: "${{ inputs.BEC_WIDGETS_BRANCH || 'main' }}"
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path: ./bec_widgets
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- name: Install dependencies
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shell: bash
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run: |
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sudo apt-get update
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sudo apt-get install -y libgl1 libegl1 x11-utils libxkbcommon-x11-0 libdbus-1-3 xvfb
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sudo apt-get -y install libnss3 libxdamage1 libasound2t64 libatomic1 libxcursor1
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- name: Install Python dependencies
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shell: bash
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run: |
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pip install uv
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uv pip install --system -e ./ophyd_devices
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uv pip install --system -e ./bec/bec_lib[dev]
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uv pip install --system -e ./bec/bec_ipython_client
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uv pip install --system -e ./bec/bec_server[dev]
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uv pip install --system -e ./bec_widgets[dev,pyside6]
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uv pip install --system -e ./addams_bec
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- name: Run Pytest with Coverage
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id: coverage
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run: pytest --random-order --cov=./addams_bec --cov-config=./addams_bec/pyproject.toml --cov-branch --cov-report=xml --no-cov-on-fail ./addams_bec/tests/ || test $? -eq 5
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62
.gitea/workflows/create_update_pr.yml
Normal file
62
.gitea/workflows/create_update_pr.yml
Normal file
@@ -0,0 +1,62 @@
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name: Create template upgrade PR for addams_bec
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on:
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workflow_dispatch:
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permissions:
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pull-requests: write
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|
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jobs:
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create_update_branch_and_pr:
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runs-on: ubuntu-latest
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permissions:
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contents: write
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pull-requests: write
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steps:
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- name: Setup Python
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uses: actions/setup-python@v5
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with:
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python-version: '3.12'
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- name: Install tools
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run: |
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pip install copier PySide6
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- name: Checkout
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uses: actions/checkout@v4
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- name: Perform update
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run: |
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git config --global user.email "bec_ci_staging@psi.ch"
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git config --global user.name "BEC automated CI"
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branch="chore/update-template-$(python -m uuid)"
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echo "switching to branch $branch"
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git checkout -b $branch
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echo "Running copier update..."
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output="$(copier update --trust --defaults --conflict inline 2>&1)"
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echo "$output"
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msg="$(printf '%s\n' "$output" | head -n 1)"
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if ! grep -q "make_commit: true" .copier-answers.yml ; then
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echo "Autocommit not made, committing..."
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git add -A
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git commit -a -m "$msg"
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fi
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if diff-index --quiet HEAD ; then
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echo "No changes detected"
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exit 0
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fi
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git push -u origin $branch
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curl -X POST "https://gitea.psi.ch/api/v1/repos/${{ gitea.repository }}/pulls" \
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-H "Authorization: token ${{ secrets.CI_REPO_WRITE }}" \
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-H "Content-Type: application/json" \
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-d "{
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\"title\": \"Template: $(echo $msg)\",
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\"body\": \"This PR was created by Gitea Actions\",
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\"head\": \"$(echo $branch)\",
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\"base\": \"main\"
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}"
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@@ -1,7 +0,0 @@
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include:
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- file: /templates/plugin-repo-template.yml
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inputs:
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name: addams_bec
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target: addams_bec
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branch: $CHILD_PIPELINE_BRANCH
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project: bec/awi_utils
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@@ -1,75 +1,57 @@
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import builtins
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import collections
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import functools
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import json
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import math
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import pathlib
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import numpy
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from bec_ipython_client.main import BECClientPrompt
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from bec_ipython_client.prettytable import PrettyTable
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__all__ = [
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'setlat',
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'setlambda',
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'setmode',
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'freeze',
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'unfreeze',
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'br',
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'ubr',
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'mvhkl',
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'umvhkl',
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'ca',
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'wh',
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'pa',
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'orientAdd',
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'orientRemove',
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'orientShow',
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'orientFit',
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'ct'
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"setlat",
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"setlambda",
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"setmode",
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"freeze",
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"unfreeze",
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"br",
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"ubr",
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"mvhkl",
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"umvhkl",
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"ca",
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"wh",
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"pa",
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"orientAdd",
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"orientRemove",
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"orientShow",
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"orientFit",
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"ct",
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]
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bec = builtins.__dict__.get("bec")
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dev = builtins.__dict__.get("dev")
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scans = builtins.__dict__.get("scans")
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class BECClientPromptDiffractometer(BECClientPrompt):
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@property
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def username(self):
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"""current username"""
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if "x04v" in dev:
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return "x04v"
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if "x04h" in dev:
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return "x04h"
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return "demo"
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bec._ip.prompts = BECClientPromptDiffractometer(ip=bec._ip, username="demo", client=bec._client, status=1)
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# check for diffractometer device
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diffract = None
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if dev is not None:
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if 'x04h' in dev:
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if "x04h" in dev:
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diffract = dev.x04h
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elif 'x04v' in dev:
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elif "x04v" in dev:
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diffract = dev.x04v
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if diffract is not None:
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RealPosition = collections.namedtuple('RealPosition', ' '.join(diffract.get_real_positioners()))
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RealPosition = collections.namedtuple("RealPosition", " ".join(diffract.get_real_positioners()))
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def freeze(
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angle: float | None
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):
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def freeze(angle: float | None):
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"""
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Freeze the value of the mode dependent angle, so when calculating motor positions
|
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corresponding to an arbitrary (H, K, L ), the angle will be reset to the frozen value
|
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Freeze the value of the mode dependent angle, so when calculating motor positions
|
||||
corresponding to an arbitrary (H, K, L ), the angle will be reset to the frozen value
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before the calculation no matter what the current position of the diffractometer.
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"""
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diffract.freeze(angle)
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def unfreeze():
|
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"""
|
||||
Subsequent angle calculations will use whatever the current value of the associated
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@@ -77,74 +59,69 @@ def unfreeze():
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"""
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diffract.unfreeze()
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def setlat(
|
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a: float, b: float, c: float, alpha: float, beta: float, gamma: float
|
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):
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|
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def setlat(a: float, b: float, c: float, alpha: float, beta: float, gamma: float):
|
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"""
|
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Set sample lattice parameters
|
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"""
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diffract.set_lattice((a, b, c, alpha, beta, gamma))
|
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|
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def setlambda(
|
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wavelength: float
|
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):
|
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|
||||
def setlambda(wavelength: float):
|
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"""
|
||||
Set the x-ray wavelength (in Angstroms)
|
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"""
|
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if wavelength <= 0:
|
||||
print('Invalid input: wavelength <=0!')
|
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print("Invalid input: wavelength <=0!")
|
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return
|
||||
|
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current_wavelength = diffract.get_wavelength()
|
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if math.isclose(wavelength, current_wavelength):
|
||||
print(f'Still using {current_wavelength} A')
|
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print(f"Still using {current_wavelength} A")
|
||||
else:
|
||||
diffract.set_wavelength(wavelength)
|
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print(f'Lambda reset from {current_wavelength} to {wavelength} A')
|
||||
print(f"Lambda reset from {current_wavelength} to {wavelength} A")
|
||||
|
||||
def setmode(
|
||||
mode: int
|
||||
):
|
||||
|
||||
def setmode(mode: int):
|
||||
"""
|
||||
Set the geometry mode
|
||||
"""
|
||||
if mode < 0 or mode > 2:
|
||||
print('Valid mode is from 0 to 2')
|
||||
print("Valid mode is from 0 to 2")
|
||||
return
|
||||
|
||||
current_mode = diffract.get_mode()
|
||||
if mode == current_mode:
|
||||
print(f'Still using mode {current_mode}')
|
||||
print(f"Still using mode {current_mode}")
|
||||
else:
|
||||
diffract.set_mode(mode)
|
||||
print(f'Mode reset from {current_mode} to {mode}')
|
||||
print(f"Mode reset from {current_mode} to {mode}")
|
||||
|
||||
def mvhkl(
|
||||
h: float, k: float, l: float, auto=False
|
||||
):
|
||||
|
||||
def mvhkl(h: float, k: float, l: float, auto=False):
|
||||
"""
|
||||
Move to the reciprocol space coordinates
|
||||
"""
|
||||
try:
|
||||
angles = diffract.forward(h, k, l)[:-2]
|
||||
except Exception as exc:
|
||||
print(f'{h} {k} {l} is not obtainable: {exc}')
|
||||
print(f"{h} {k} {l} is not obtainable: {exc}")
|
||||
return
|
||||
|
||||
if not auto:
|
||||
for axis, current, target in zip(RealPosition._fields, _currentPosition(), angles):
|
||||
print('%7s = %9.4f --> %9.4f' % (axis, current, target))
|
||||
print("%7s = %9.4f --> %9.4f" % (axis, current, target))
|
||||
|
||||
answer = input('Move to these values? [Y/n]: ')
|
||||
if answer.startswith(('N', 'n')):
|
||||
print('Move abandoned.')
|
||||
answer = input("Move to these values? [Y/n]: ")
|
||||
if answer.startswith(("N", "n")):
|
||||
print("Move abandoned.")
|
||||
return
|
||||
|
||||
|
||||
br(h, k, l)
|
||||
|
||||
def br(
|
||||
h: float, k: float, l: float
|
||||
):
|
||||
|
||||
def br(h: float, k: float, l: float):
|
||||
"""
|
||||
Move to the reciprocol space coordinates
|
||||
"""
|
||||
@@ -156,9 +133,8 @@ def br(
|
||||
|
||||
scans.mv(*args, relative=False)
|
||||
|
||||
def ubr(
|
||||
h: float, k: float, l: float
|
||||
):
|
||||
|
||||
def ubr(h: float, k: float, l: float):
|
||||
"""
|
||||
Move to the reciprocol space coordinates with updates
|
||||
"""
|
||||
@@ -170,44 +146,43 @@ def ubr(
|
||||
|
||||
scans.umv(*args, relative=False)
|
||||
|
||||
def umvhkl(
|
||||
h: float, k: float, l: float, auto=False
|
||||
):
|
||||
|
||||
def umvhkl(h: float, k: float, l: float, auto=False):
|
||||
"""
|
||||
Move to the reciprocol space coordinates with updates
|
||||
"""
|
||||
try:
|
||||
angles = diffract.forward(h, k, l)[:-2]
|
||||
except Exception as exc:
|
||||
print(f'{h} {k} {l} is not obtainable: {exc}')
|
||||
print(f"{h} {k} {l} is not obtainable: {exc}")
|
||||
return
|
||||
|
||||
if not auto:
|
||||
for axis, current, target in zip(RealPosition._fields, _currentPosition(), angles):
|
||||
print('%7s = %9.4f --> %9.4f' % (axis, current, target))
|
||||
print("%7s = %9.4f --> %9.4f" % (axis, current, target))
|
||||
|
||||
answer = input('Move to these values? [Y/n]: ')
|
||||
if answer.startswith(('N', 'n')):
|
||||
print('Move abandoned.')
|
||||
answer = input("Move to these values? [Y/n]: ")
|
||||
if answer.startswith(("N", "n")):
|
||||
print("Move abandoned.")
|
||||
return
|
||||
|
||||
|
||||
ubr(h, k, l)
|
||||
|
||||
def ca(
|
||||
h: float, k: float, l: float
|
||||
):
|
||||
|
||||
def ca(h: float, k: float, l: float):
|
||||
"""
|
||||
Calculate angle positions for a given point in reciprocol space
|
||||
"""
|
||||
angles = diffract.forward(h, k, l)
|
||||
print("\nCalculated positions:\n")
|
||||
print(f'H K L = {h} {k} {l}')
|
||||
print('BetaIn = %.5f BetaOut = %.5f' %(angles[-2], angles[-1]))
|
||||
print('Lambda = %.3f' % diffract.get_wavelength())
|
||||
print(f"H K L = {h} {k} {l}")
|
||||
print("BetaIn = %.5f BetaOut = %.5f" % (angles[-2], angles[-1]))
|
||||
print("Lambda = %.3f" % diffract.get_wavelength())
|
||||
|
||||
print()
|
||||
_showAngles(angles[:-2])
|
||||
|
||||
|
||||
def wh():
|
||||
"""
|
||||
Show where principal axes and reciprocal space
|
||||
@@ -218,41 +193,45 @@ def wh():
|
||||
betaIn = diffract.betaIn.position
|
||||
betaOut = diffract.betaOut.position
|
||||
|
||||
print(f'H K L = {h:.4f} {k:.4f} {l:.4f}')
|
||||
print('BetaIn = %.5f BetaOut = %.5f' %(betaIn, betaOut))
|
||||
print('Lambda = %.3f' % diffract.get_wavelength())
|
||||
print(f"H K L = {h:.4f} {k:.4f} {l:.4f}")
|
||||
print("BetaIn = %.5f BetaOut = %.5f" % (betaIn, betaOut))
|
||||
print("Lambda = %.3f" % diffract.get_wavelength())
|
||||
|
||||
print()
|
||||
_showAngles()
|
||||
|
||||
|
||||
def pa():
|
||||
"""
|
||||
Show geometry parameters
|
||||
"""
|
||||
if diffract.name == 'x04v':
|
||||
print('x04v (Newport Microcontrols 2+3 at SLS) vertical geometry')
|
||||
elif diffract.name == 'x04h':
|
||||
print('x04h (Newport Microcontrols 2+3 at SLS) horizontal geometry')
|
||||
if diffract.name == "x04v":
|
||||
print("x04v (Newport Microcontrols 2+3 at SLS) vertical geometry")
|
||||
elif diffract.name == "x04h":
|
||||
print("x04h (Newport Microcontrols 2+3 at SLS) horizontal geometry")
|
||||
|
||||
match mode := diffract.get_mode():
|
||||
case 0:
|
||||
print(f' BetaIn Fixed (mode {mode})')
|
||||
print(f" BetaIn Fixed (mode {mode})")
|
||||
case 1:
|
||||
print(f' BetaOut Fixed (mode {mode})')
|
||||
print(f" BetaOut Fixed (mode {mode})")
|
||||
case 2:
|
||||
print(f' BetaIn equals BetaOut (mode {mode})')
|
||||
|
||||
print(f" BetaIn equals BetaOut (mode {mode})")
|
||||
|
||||
if beta_frozen := diffract.get_frozen():
|
||||
print(f' Frozen coordinate: {beta_frozen}')
|
||||
print(f" Frozen coordinate: {beta_frozen}")
|
||||
|
||||
|
||||
def orientShow():
|
||||
"""
|
||||
Display list of measured reflections
|
||||
"""
|
||||
print('\n(Using lattice constants:)')
|
||||
print("\n(Using lattice constants:)")
|
||||
lattice = diffract.get_lattice()
|
||||
print('a = %.4g, b = %.4g, b = %.4g, alpha = %.6g, beta = %.6g, gamma = %.6g' %
|
||||
(lattice[0], lattice[1], lattice[2], lattice[3], lattice[4], lattice[5]))
|
||||
print(
|
||||
"a = %.4g, b = %.4g, b = %.4g, alpha = %.6g, beta = %.6g, gamma = %.6g"
|
||||
% (lattice[0], lattice[1], lattice[2], lattice[3], lattice[4], lattice[5])
|
||||
)
|
||||
|
||||
print("\n------------------------------------------------\n")
|
||||
|
||||
@@ -263,17 +242,15 @@ def orientShow():
|
||||
|
||||
_showUB()
|
||||
|
||||
def orientRemove(
|
||||
h: float, k: float, l: float
|
||||
):
|
||||
|
||||
def orientRemove(h: float, k: float, l: float):
|
||||
"""
|
||||
Remove a measured reflection from the list
|
||||
"""
|
||||
diffract.remove_reflection(h, k, l)
|
||||
|
||||
def orientAdd(
|
||||
h: float, k: float, l: float, *args
|
||||
):
|
||||
|
||||
def orientAdd(h: float, k: float, l: float, *args):
|
||||
"""
|
||||
Add a reflection to the list of measured reflections
|
||||
"""
|
||||
@@ -282,63 +259,67 @@ def orientAdd(
|
||||
response = diffract.real_position
|
||||
# The original return value is of namedtuple type,
|
||||
# which gets serialized to a dictionary by the device server.
|
||||
angles = tuple(response['values'][axis] for axis in response['fields'] if axis != 'nu')
|
||||
angles = tuple(response["values"][axis] for axis in response["fields"] if axis != "nu")
|
||||
|
||||
if len(angles) < 4:
|
||||
print('Please specify all angles')
|
||||
print("Please specify all angles")
|
||||
return
|
||||
|
||||
diffract.add_reflection(h, k, l, angles)
|
||||
|
||||
def orientSave(
|
||||
filename: str
|
||||
):
|
||||
|
||||
def orientSave(filename: str):
|
||||
"""
|
||||
Save the current reflections
|
||||
"""
|
||||
configuration = {}
|
||||
configuration['geometry'] = diffract.name
|
||||
configuration['wavelength'] = diffract.get_wavelength()
|
||||
configuration['lattice'] = diffract.get_lattice()
|
||||
configuration['reflections'] = diffract.get_reflections()
|
||||
|
||||
configuration["geometry"] = diffract.name
|
||||
configuration["wavelength"] = diffract.get_wavelength()
|
||||
configuration["lattice"] = diffract.get_lattice()
|
||||
configuration["reflections"] = diffract.get_reflections()
|
||||
|
||||
filepath = pathlib.Path(filename)
|
||||
if filepath.exists():
|
||||
answer = input('File "%s" already exists. Do you want to overwrite it? [y/N]: ' %(filepath.absolute()))
|
||||
if not answer.startswith(('Y', 'y')):
|
||||
answer = input(
|
||||
'File "%s" already exists. Do you want to overwrite it? [y/N]: ' % (filepath.absolute())
|
||||
)
|
||||
if not answer.startswith(("Y", "y")):
|
||||
return
|
||||
|
||||
with open(filepath, 'w') as f:
|
||||
with open(filepath, "w") as f:
|
||||
json.dump(configuration, f)
|
||||
|
||||
def orientLoad(
|
||||
filename: str
|
||||
):
|
||||
|
||||
def orientLoad(filename: str):
|
||||
"""
|
||||
Load relfections from file
|
||||
"""
|
||||
with open(filename, 'r') as f:
|
||||
with open(filename, "r") as f:
|
||||
configuration = json.load(f)
|
||||
if configuration['geometry'] != diffract.name:
|
||||
print('Saved orientation is for a different geometry "%s", current is "%s".' % configuration['geometry'], diffract.name)
|
||||
if configuration["geometry"] != diffract.name:
|
||||
print(
|
||||
'Saved orientation is for a different geometry "%s", current is "%s".'
|
||||
% configuration["geometry"],
|
||||
diffract.name,
|
||||
)
|
||||
return
|
||||
|
||||
# save current wavelength, lattice and reflections
|
||||
saved_wavelength = diffract.get_wavelength()
|
||||
saved_lattice = diffract.get_lattice()
|
||||
saved_reflections = diffract.get_reflections()
|
||||
|
||||
|
||||
try:
|
||||
diffract.set_lattice(configuration['lattice'])
|
||||
|
||||
diffract.set_lattice(configuration["lattice"])
|
||||
|
||||
diffract.clear_reflections()
|
||||
for reflection in configuration['reflections']:
|
||||
for reflection in configuration["reflections"]:
|
||||
diffract.add_reflection(*reflection)
|
||||
|
||||
_showReflections(configuration['reflections'])
|
||||
_showReflections(configuration["reflections"])
|
||||
print("\n------------------------------------------------\n")
|
||||
# set wavelength temporarily for orientFit and restore later
|
||||
diffract.set_wavelength(configuration['wavelength'])
|
||||
diffract.set_wavelength(configuration["wavelength"])
|
||||
orientFit()
|
||||
except Exception as exc:
|
||||
# restore saved lattice and reflections
|
||||
@@ -352,6 +333,7 @@ def orientLoad(
|
||||
# restore wavelength
|
||||
diffract.set_wavelength(saved_wavelength)
|
||||
|
||||
|
||||
def orientFit():
|
||||
"""
|
||||
Fit UB matrix from given reflections
|
||||
@@ -364,19 +346,22 @@ def orientFit():
|
||||
diffract.compute_UB()
|
||||
_showUB()
|
||||
|
||||
|
||||
def ct(exp_time: float):
|
||||
"""
|
||||
Acquire all detectors
|
||||
"""
|
||||
scans.acquire(exp_time=exp_time)
|
||||
|
||||
|
||||
def _showUB():
|
||||
UB = diffract.get_UB()
|
||||
|
||||
print('Orientation matrix by row:')
|
||||
print(' Row 1: %8.5f %8.5f %8.5f' % (UB[0,0], UB[0,1], UB[0,2]))
|
||||
print(' Row 2: %8.5f %8.5f %8.5f' % (UB[1,0], UB[1,1], UB[1,2]))
|
||||
print(' Row 3: %8.5f %8.5f %8.5f' % (UB[2,0], UB[2,1], UB[2,2]))
|
||||
|
||||
print("Orientation matrix by row:")
|
||||
print(" Row 1: %8.5f %8.5f %8.5f" % (UB[0, 0], UB[0, 1], UB[0, 2]))
|
||||
print(" Row 2: %8.5f %8.5f %8.5f" % (UB[1, 0], UB[1, 1], UB[1, 2]))
|
||||
print(" Row 3: %8.5f %8.5f %8.5f" % (UB[2, 0], UB[2, 1], UB[2, 2]))
|
||||
|
||||
|
||||
def _showAngles(angles=None):
|
||||
if angles is None:
|
||||
@@ -384,23 +369,25 @@ def _showAngles(angles=None):
|
||||
|
||||
table = PrettyTable(RealPosition._fields, padding=12)
|
||||
print(table.get_header())
|
||||
text = tuple(f'{x:9.4f}' for x in angles)
|
||||
text = tuple(f"{x:9.4f}" for x in angles)
|
||||
print(table.get_row(*text))
|
||||
|
||||
|
||||
def _currentPosition():
|
||||
response = diffract.real_position
|
||||
# The original return value is of namedtuple type,
|
||||
# which gets serialized to a dictionary by the device server.
|
||||
angles = RealPosition(*(response['values'][axis] for axis in response['fields']))
|
||||
angles = RealPosition(*(response["values"][axis] for axis in response["fields"]))
|
||||
return angles
|
||||
|
||||
|
||||
def _showReflections(reflections):
|
||||
print('The defined reflections are:')
|
||||
header = ['h', 'k', 'l'] + diffract.real_position['fields'][:-1]
|
||||
print("The defined reflections are:")
|
||||
header = ["h", "k", "l"] + diffract.real_position["fields"][:-1]
|
||||
table = PrettyTable(header, padding=12)
|
||||
print(' ', table.get_header())
|
||||
print(" ", table.get_header())
|
||||
|
||||
for reflection in reflections:
|
||||
h, k, l, angles = reflection
|
||||
text = [f'{h:9.4f}', f'{k:9.4f}', f'{l:9.4f}'] + [f'{x:9.4f}' for x in angles]
|
||||
print(' ', table.get_row(*text))
|
||||
text = [f"{h:9.4f}", f"{k:9.4f}", f"{l:9.4f}"] + [f"{x:9.4f}" for x in angles]
|
||||
print(" ", table.get_row(*text))
|
||||
|
||||
@@ -34,7 +34,27 @@ to setup the prompts.
|
||||
"""
|
||||
|
||||
# pylint: disable=invalid-name, unused-import, import-error, undefined-variable, unused-variable, unused-argument, no-name-in-module
|
||||
import builtins
|
||||
from typing import TYPE_CHECKING
|
||||
|
||||
if TYPE_CHECKING:
|
||||
from bec_ipython_client.main import BECIPythonClient
|
||||
|
||||
bec: BECIPythonClient = BECIPythonClient()
|
||||
dev = bec.device_manager.devices
|
||||
scans = bec.scans
|
||||
|
||||
else:
|
||||
bec = builtins.__dict__.get("bec")
|
||||
dev = builtins.__dict__.get("dev")
|
||||
scans = builtins.__dict__.get("scans")
|
||||
|
||||
bec.load_high_level_interface("bec_hli")
|
||||
bec.load_high_level_interface("spec_hli")
|
||||
bec.load_high_level_interface("hkl_hli")
|
||||
|
||||
|
||||
if "x04v" in dev:
|
||||
bec._ip.prompts.session_name = "x04v"
|
||||
elif "x04h" in dev:
|
||||
bec._ip.prompts.session_name = "x04h"
|
||||
|
||||
@@ -3,8 +3,12 @@ Pre-startup script for BEC client. This script is executed before the BEC client
|
||||
is started. It can be used to add additional command line arguments.
|
||||
"""
|
||||
|
||||
import os
|
||||
|
||||
from bec_lib.service_config import ServiceConfig
|
||||
|
||||
import addams_bec
|
||||
|
||||
|
||||
def extend_command_line_args(parser):
|
||||
"""
|
||||
@@ -14,3 +18,14 @@ def extend_command_line_args(parser):
|
||||
# parser.add_argument("--session", help="Session name", type=str, default="cSAXS")
|
||||
|
||||
return parser
|
||||
|
||||
def get_config() -> ServiceConfig:
|
||||
"""
|
||||
Create and return the ServiceConfig for the plugin repository
|
||||
"""
|
||||
deployment_path = os.path.dirname(os.path.dirname(os.path.dirname(addams_bec.__file__)))
|
||||
files = os.listdir(deployment_path)
|
||||
if "bec_config.yaml" in files:
|
||||
return ServiceConfig(config_path=os.path.join(deployment_path, "bec_config.yaml"))
|
||||
else:
|
||||
return ServiceConfig(redis={"host": "localhost", "port": 6379})
|
||||
|
||||
6
addams_bec/macros/README.md
Normal file
6
addams_bec/macros/README.md
Normal file
@@ -0,0 +1,6 @@
|
||||
# Macros
|
||||
|
||||
This directory is intended to store macros which will be loaded automatically when starting BEC.
|
||||
Macros are small functions to make repetitive tasks easier. Functions defined in python files in this directory will be accessible from the BEC console.
|
||||
Please do not put any code outside of function definitions here. If you wish for code to be automatically run when starting BEC, see the startup script at addams_bec/bec_ipython_client/startup/post_startup.py
|
||||
For a guide on writing macros, please see: https://bec.readthedocs.io/en/latest/user/command_line_interface.html#how-to-write-a-macro
|
||||
0
addams_bec/macros/__init__.py
Normal file
0
addams_bec/macros/__init__.py
Normal file
@@ -5,8 +5,8 @@ build-backend = "hatchling.build"
|
||||
[project]
|
||||
name = "addams_bec"
|
||||
version = "0.0.0"
|
||||
description = "A plugin repository for BEC for the ADDAMS beamline"
|
||||
requires-python = ">=3.10"
|
||||
description = "A plugin repository for BEC"
|
||||
requires-python = ">=3.11"
|
||||
classifiers = [
|
||||
"Development Status :: 3 - Alpha",
|
||||
"Programming Language :: Python :: 3",
|
||||
|
||||
Reference in New Issue
Block a user