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MS-read-parameters-file

OptScan_VersionRevision

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• 5b0b407acf MS doc: added a line to clarify how to worked with stitched scans. master Hector Dejea 2020-02-17 13:53:04 +01:00
• bec1f44322 MS plugin: fixed a bug in calculation of the motor positions in txt files. Hector Dejea 2020-02-17 13:38:26 +01:00
• e865a60866 Docs Multiscale: built sphinx Hector Dejea 2019-12-02 11:11:50 +01:00
• 12df390145 Docs Multiscale: changed variable name. Hector Dejea 2019-12-02 11:11:14 +01:00
• 51110e3d0e Docs Multiscale: changed variable name. Hector Dejea 2019-12-02 11:09:22 +01:00
• c7d8dfec61 Docs Multiscale: updated old images and related text. Hector Dejea 2019-12-02 11:08:42 +01:00
• 89bf11d1df Docs Multiscale: tried to clarify Slices in Y. Hector Dejea 2019-12-02 11:00:30 +01:00
• 88f9b744eb Docs multiscale: changred image sizes. Hector Dejea 2019-12-02 10:51:51 +01:00
• 010191e1d4 Docs Multiscale: fixed bug. Hector Dejea 2019-12-02 10:39:20 +01:00
• 5d0708dc70 Mulitscale Docs: changed sizes of two images. Hector Dejea 2019-12-02 10:36:57 +01:00
• 6d565559fd Docs Multiscale: adapted text for latest updates and changed some images. Hector Dejea 2019-12-02 10:33:12 +01:00
• ae93773e0a Docs Multiscale: Added and changed some images Hector Dejea 2019-12-02 10:32:19 +01:00
• bcc8fce3f5 Added Help button Hector Dejea 2019-11-29 19:06:37 +01:00
• 3b061a8c50 The given Fiji slices are corrected by the "height" in which they are contained. Hector Dejea 2019-11-29 16:42:59 +01:00
• c4e9bf1dbe Dialogs for clarification of which txt file is being saved. Hector Dejea 2019-11-29 15:05:13 +01:00
• f942aca114 Added dialogs before browsing saving directory to avoid confusions when both txts are generated Hector Dejea 2019-11-29 14:26:46 +01:00
• 3f1e6fe747 Added Fiji coordinates txt file generation and modified last dialog Hector Dejea 2019-11-29 14:10:42 +01:00
• fc0689d177 Added a function computeYscans Hector Dejea 2019-11-29 10:57:04 +01:00
• f21122b429 Added missing Array definitions Hector Dejea 2019-11-29 10:11:34 +01:00
• 2ad99f87d5 Added counter to save all Fiji positions and reorganized end of script Hector Dejea 2019-11-29 10:07:49 +01:00
• e361545507 Changed variable names to differentiate between Motor and Fiji coordinates and added functions for Fiji Hector Dejea 2019-11-29 09:56:28 +01:00
• afa64d6351 Changed function name to generateTXTMotorsArray Hector Dejea 2019-11-28 16:53:59 +01:00
• ecd741be9d Added checkbox for Fiji Coordinates with variable txtFijiFlag Hector Dejea 2019-11-28 16:48:01 +01:00
• b7fd2202c8 Multiscale: Added "by" in final message and changed variable name from txtFlag to txtMotorsFlag Hector Dejea 2019-11-28 16:32:00 +01:00
• c17428eacb OptScan: changed header. Hector Dejea 2019-10-18 11:16:20 +02:00
• 8be00a72f6 OptScan Docs: fixed typos and rebuilt sphinx. Hector Dejea 2019-10-18 10:50:38 +02:00
• 91e9cdc143 SphinxDocs: added few text changes and built to have OptScan included. Hector Dejea 2019-10-18 10:45:17 +02:00
• 1f6acc4227 SphinxDocs: Added sphinx documentation for OptScan plugin and adapted index.rst correspondingly. Hector Dejea 2019-10-18 10:33:43 +02:00
• db492fd5e3 Multiscale Sphinx Docs: fixed text and added new image paths. Hector Dejea 2019-10-18 10:32:41 +02:00
• f6d5bad5cb SphinxDocs: restructured the images folder. Hector Dejea 2019-10-18 10:32:00 +02:00
• 72f8aad237 Markdown docs: added emphasis to paths and variables. Fixed a list. Hector Dejea 2019-10-18 10:15:10 +02:00
• 748c4da4b9 Markdown docs: added title and changed a few lines of text. Hector Dejea 2019-10-18 10:05:48 +02:00
• 75b5323994 ReadMe: changed description of OptScan plugin. Hector Dejea 2019-10-17 19:28:26 +02:00
• 7ee0bd3514 Added OptScan documentation link to ReadMe file. Hector Dejea 2019-10-17 19:27:06 +02:00
• 00d6f32768 OptScanDocs: Changed Introduction & Purpose paragraph. Hector Dejea 2019-10-17 19:25:52 +02:00
• 0d420d2912 Trying to fix error in listing. Hector Dejea 2019-10-17 19:24:17 +02:00
• 903307d26c Fixed text. Hector Dejea 2019-10-17 19:23:39 +02:00
• faaea012f8 Fixed text Hector Dejea 2019-10-17 19:20:39 +02:00
• dfde213798 Corrected markdown bug. Hector Dejea 2019-10-17 19:18:25 +02:00
• 8615388009 Docs: Corrected note about plugin restart in OptScan and MultiscaleCoords. Hector Dejea 2019-10-17 19:17:22 +02:00
• 62cc7921b3 OptScanDocs: resized image and fixed parts of the text that were still in rst format. Hector Dejea 2019-10-17 19:13:55 +02:00
• 923e0d0eec Added images to OptScanDocumentation and changed the tree folder for the documentation images in markdown. Hector Dejea 2019-10-17 19:10:02 +02:00
• 47fb50d869 OptScanDocs: converted rst file into md file and corrected part of the text. Hector Dejea 2019-10-17 19:02:15 +02:00
• abacac1104 MultiscaleDocs: added note. Hector Dejea 2019-10-17 19:00:40 +02:00
• bcb4eb52af OptScan: Created first version of documentation file. Hector Dejea 2019-10-17 18:48:00 +02:00
• 2f184749ff ReadMe: added sentence to describe MultiscaleCoords plugin. Hector Dejea 2019-10-17 18:23:35 +02:00
• 690d34abd5 MultiscaleDocs: fixed image sizes and text Hector Dejea 2019-10-17 18:12:06 +02:00
• c240b3900a MultiscaleDocs: fixed image sizes Hector Dejea 2019-10-17 18:09:15 +02:00
• 8a472ab316 MultiscaleDocs: fixed images Hector Dejea 2019-10-17 18:05:12 +02:00
• a059a68d37 MultiscaleDocs: added images for markdown file. Hector Dejea 2019-10-17 18:02:28 +02:00
• 2746cebf81 Multiscale Docs: added citation line. Hector Dejea 2019-10-17 17:49:46 +02:00
• 3365f13ecb Add link to MultiscaleCoords plugin documentation to main Readme.md Christian Schlepütz 2019-10-17 17:35:49 +02:00
• 1f62cddc7b Update .gitlab-ci.yml to reflect change in folder structure of documentation Christian Schlepuetz 2019-10-17 17:32:41 +02:00
• 31f98dc647 Added markdown folder in docs with the markdown instructions for the Multiscale plugin. Hector Dejea 2019-10-17 17:29:05 +02:00
• b318cf34ec Change folder structure of the docs directory Christian Schlepütz 2019-10-17 17:24:10 +02:00
• 3427967e4d MultiscaleDoc: Updated the text to newest version. Hector Dejea 2019-10-17 11:34:57 +02:00
• 25cfe50f44 Merge branch 'OptScan_VersionRevision' Hector Dejea 2019-10-14 10:47:40 +02:00
• ec1259303b OptScan: Change a comment. OptScan_VersionRevision Hector Dejea 2019-10-14 10:47:09 +02:00
• a929a097ab Removed to avoid conflicts with Chris. Hector Dejea 2019-10-14 10:46:47 +02:00
• 9e99b1136f OptScan: fixed prints and comments to be more clear. Hector Dejea 2019-10-14 08:17:15 +02:00
• 8108ff2187 OptScan: Removed Constant Grid option (was not working yet), since the point of optimised scan is then lost. Some comments have been fixed. Hector Dejea 2019-10-14 07:58:30 +02:00
• a4083a8cf4 OptScan: fixed missing semicolon. Hector Dejea 2019-10-14 07:49:04 +02:00
• 0a88bba53a OptScan: plugin can read and write hidden parameters file in home folder. Hector Dejea 2019-10-14 07:45:11 +02:00
• 265be9de63 Replaced the python version of the centering overlay plugin with an ImageJ macro version for much better performance (no overhead due to loading of libraries) Christian Schlepütz 2019-10-11 12:25:44 +02:00
• 96ea80aefc Added TODO comment about reading settings file Hector Dejea 2019-10-10 18:26:48 +02:00
• 22860e351d MultiScale: changed creation date Hector Dejea 2019-10-10 15:46:52 +02:00
• f519685d39 OptScan: Changed header Hector Dejea 2019-10-10 15:44:41 +02:00
• b8d26956d9 Merge branch 'MS-read-parameters-file' Hector Dejea 2019-10-10 15:27:58 +02:00
• 13dc11a66c Implemented "if" to check if settings file exists and put corresponding default values. At end of plugin, the settings file is (re)written with the new parameters. MS-read-parameters-file Hector Dejea 2019-10-10 15:02:25 +02:00
• 1c6a324991 Removed temporary file for tests Hector Dejea 2019-10-10 15:00:47 +02:00
• cd9fd03d32 Added last modification line. Hector Dejea 2019-10-10 11:20:37 +02:00
• fac54043eb Changed if for test Hector Dejea 2019-10-10 11:18:44 +02:00
• 3d958949ab Added if Hector Dejea 2019-10-10 11:13:09 +02:00
• c6f7dec489 Added hidden file for testing Hector Dejea 2019-10-10 11:09:49 +02:00
• 598e8efdd1 Removed stitchedScan line, since this is deprecated. Hector Dejea 2019-10-10 11:07:46 +02:00
• 9bc9063258 Changed some comments. Test after reverting commits. Hector Dejea 2019-10-10 09:55:48 +02:00
• 7502884460 Reverted commit to older version Hector Dejea 2019-10-10 09:54:09 +02:00
• d88982944f Resolved conflict after testing branch merging Hector Dejea 2019-10-10 09:49:27 +02:00
• 743483ad60 Merge branch 'develMultiScale' Hector Dejea 2019-10-10 09:48:08 +02:00
• d0440a87b3 Few comments rewritten Hector Dejea 2019-10-10 09:42:26 +02:00
• badc36a15e Removed temporary code on rotation correction. This will be only developed in a specific branch. Hector Dejea 2019-10-10 07:47:56 +02:00
• 4188da9d2d First version the Optimal Scan plugin. Hector Dejea 2019-10-09 16:39:41 +02:00
• 2461e024f5 Newest version of the plugin (txt generation). From now on always called Multiscale_Coords.ijm. Hector Dejea 2019-10-09 16:33:00 +02:00
• d985008971 Very old version not needed Hector Dejea 2019-05-21 14:22:29 +02:00
• ff655ffb85 stageRotation is defined only by default and can't be modified Hector Dejea 2019-05-21 14:22:17 +02:00
• 943699e721 Bug fixed for 1x1 scans Hector Dejea 2019-05-21 14:14:48 +02:00
• c3edabba4a Newest plugin with known bugs removed and cleaned. New capabilities are shown commented with "To Do". Hector Dejea 2019-05-21 13:14:39 +02:00
• 221fcbfa61 Latest plugin version, with correct reference paper Hector Dejea 2019-05-14 14:29:17 +02:00
• 5c7c9b4381 New version without "Check" option for stitched scan. Now mandatory to go to the panel and introduce the number of volumes per dimension desired. Hector Dejea 2019-04-11 14:39:36 +02:00
• 9db96d3ce8 Update .gitlab-ci.yml to include the relevant tags to be able to use shared runners Christian Schlepuetz 2018-01-19 16:51:09 +01:00
• b701ee7261 Rebuilt html against master to test GitLab runners Christian Schlepuetz 2018-01-19 15:40:24 +01:00
• 0a430a4255 Update installation instructions Christian Schlepuetz 2018-01-19 15:39:37 +01:00
• eb8636af70 Rebuilt html against master Christian Schlepuetz 2018-01-18 17:06:15 +01:00
• ba6332ec51 Updated Fiji installation instructions Christian Schlepuetz 2018-01-18 17:05:57 +01:00
• c1d478d29b Rebuilt html against master Christian Schlepuetz 2018-01-10 14:27:36 +01:00
• 9c9ff61363 Updated Table of Contents on index.rst Christian Schlepuetz 2018-01-10 14:26:54 +01:00
• 332a30e03f Rebuilt html against master Christian Schlepuetz 2018-01-10 11:54:29 +01:00
• a0ab5eab1f Added installation instructions for Fiji at the beamline Christian Schlepuetz 2018-01-10 11:52:20 +01:00
• 0e2bb1f11c Add Fiji Installation Instructions for Beamline marone 2018-01-10 11:47:14 +01:00
• 06f127c32f Add docs/build directory tree Christian Schlepuetz 2017-10-05 14:17:01 +02:00